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		Contact Molecules for Homologous Proteins
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PID

QueryLength

Homolgous Sequence in PDB

UniProt Query

TITLE

1694410

207

500

P51149(RAB7A_HUMAN)

RecName: Full=Ras-related protein Rab-7a ; EC=3.6.5.2 ;

QUERYSEQ

MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP
YFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P51149(RAB7A_HUMAN)]

207
	region	name	description
	2-207	CHAIN	/note="Ras-related protein Rab-7a" /id="PRO_0000121121"
	15-22	BINDING	/ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269\|PubMed:20028791"
	34-40	BINDING	/ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269\|PubMed:20028791"
	63-67	BINDING	/ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269\|PubMed:20028791"
	125-128	BINDING	/ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269\|PubMed:20028791"
	156-157	BINDING	/ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269\|PubMed:20028791"
	205-205	LIPID	/note="S-geranylgeranyl cysteine"
	207-207	LIPID	/note="S-geranylgeranyl cysteine"
	1-207	DISORDER	predicted by DISOPRED

MONOMER

207

pdb_id a¹ identity[%]² description

1vg8 A 100.0 RAB7_RAT Ras-related protein Rab-7

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1vg0[1] A RAE1_RAT Rab proteins geranylgeranyltransferase component A.. B 100.0
/100.0 24
/24 RAB7_RAT Ras-related protein Rab-7

1vg9[4] A RAE1_RAT Rab proteins geranylgeranyltransferase component A.. B 100.0
/100.0 19
/19 RAB7_RAT Ras-related protein Rab-7

1yhn[2] B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5 13
/13 RAB7_HUMAN Ras-related protein Rab-7

1yhn[2] B RILP_HUMAN Rab interacting lysosomal protein[65 aa] A 100.0
/99.5 17
/17 RAB7_HUMAN Ras-related protein Rab-7

6wcw[1] B RUBIC_HUMAN Run domain Beclin-1-interacting and cysteine-rich .. A 100.0
/99.4 18
/18 RAB7A_HUMAN Ras-related protein Rab-7a

7f6j[2] C PDZD8_HUMAN PDZ domain-containing protein 8[106 aa] A 100.0
/99.4 26
/26 RAB7A_HUMAN Ras-related protein Rab-7a

6iyb[2] B OSBL1_HUMAN Oxysterol-binding protein-related protein 1[135 aa.. A 100.0
/99.4 12
/12 RAB7A_HUMAN Ras-related protein Rab-7a

5z2m[1] A OSBL1_MOUSE Oxysterol-binding protein-related protein 1[137 aa.. B 88.9
/99.4 9
/9 RAB7A_MOUSE Ras-related protein Rab-7a

5z2m[1] D OSBL1_MOUSE Oxysterol-binding protein-related protein 1[136 aa.. C 100.0
/99.4 7
/7 RAB7A_MOUSE Ras-related protein Rab-7a

5ldd[2] A G0SGS3_CHATD Mon1[155 aa] C 95.0
/85.1 20
/20 G0SGE1_CHATD Rab small monomeric GTPase-like protein

5ldd[2] B G0SD94_CHATD Ccz1[166 aa] C 100.0
/85.1 6
/6 G0SGE1_CHATD Rab small monomeric GTPase-like protein

7e1t[1] C NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. A 40.0
/56.9 5
/5 RAB9A_HUMAN Ras-related protein Rab-9A

7e1t[1] C NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. B 72.7
/56.5 11
/11 RAB9A_HUMAN Ras-related protein Rab-9A

7e1t[1] D NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. A 72.7
/56.9 11
/11 RAB9A_HUMAN Ras-related protein Rab-9A

7e1t[1] D NDE1_HUMAN Isoform 2 of Nuclear distribution protein nudE hom.. B 50.0
/56.5 6
/6 RAB9A_HUMAN Ras-related protein Rab-9A

4qxa[1] B SGSM1_MOUSE Small G protein signaling modulator 1[147 aa] A 72.7
/54.7 11
/11 RAB9A_MOUSE Ras-related protein Rab-9A

5jcz[3] B MYO5A_HUMAN Unconventional myosin-Va[364 aa] A 52.9
/42.7 17
/17 RB11A_HUMAN Ras-related protein Rab-11A

4q9u[1] A RABX5_HUMAN Rab5 GDP/GTP exchange factor[303 aa] B 66.7
/45.3 21
/22 RAB5A_HUMAN Ras-related protein Rab-5A

4kyi[4] A Q5ZRP9_LEGPH VipD[530 aa] B 69.2
/44.3 13
/14 RAB5C_HUMAN Ras-related protein Rab-5C

2wwx[8] B Q29ST3_LEGPN DRRA[200 aa] A 64.7
/39.6 34
/36 RAB1A_HUMAN RAS-RELATED PROTEIN RAB-1

1tu3[6] F RABE1_HUMAN Rab GTPase binding effector protein 1[46 aa] A 66.7
/43.7 9
/9 RAB5A_HUMAN Ras-related protein Rab-5A

1tu3[6] G RABE1_HUMAN Rab GTPase binding effector protein 1[51 aa] A 66.7
/43.7 6
/6 RAB5A_HUMAN Ras-related protein Rab-5A

3mjh[2] B EEA1_HUMAN Early endosome antigen 1[34 aa] A 69.2
/43.0 13
/13 RAB5A_HUMAN Ras-related protein Rab-5A

7bl1[1] B PK3C3_HUMAN Phosphatidylinositol 3-kinase catalytic subunit ty.. F 60.0
/43.0 5
/5 RAB5A_HUMAN Ras-related protein Rab-5A

7bl1[1] C PI3R4_HUMAN Phosphoinositide 3-kinase regulatory subunit 4[118.. F 100.0
/43.0 2
/3 RAB5A_HUMAN Ras-related protein Rab-5A

2efc[9] A Q9LT31_ARATH Similarity to vacuolar protein sorting-associated .. B 60.0
/42.7 25
/25 Q9SN68_ARATH Small GTP-binding protein-like

2gzh[9] B RFIP2_HUMAN RAB11-FIP2 long isoform[57 aa] A 50.0
/42.0 12
/12 RB11A_HUMAN Ras-related protein Rab-11A

4lwz[3] B MYO5B_HUMAN Unconventional myosin-Vb[367 aa] A 50.0
/41.4 14
/14 RB11A_HUMAN Ras-related protein Rab-11A

2d7c[35] C RFIP3_HUMAN Rab11 family-interacting protein 3[42 aa] A 42.9
/42.0 14
/14 RB11A_HUMAN Ras-related protein Rab-11A

2hv8[1] F RFIP3_HUMAN Rab11 family-interacting protein 3[41 aa] C 66.7
/42.0 3
/3 RB11A_HUMAN Ras-related protein Rab-11A

1z0j[1] B FYVE-finger-containing Rab5 effector protein raben.. A 53.8
/42.4 13
/14 RB22A_MOUSE Ras-related protein Rab-22A

4lwz[1] D MYO5B_HUMAN Unconventional myosin-Vb[346 aa] C 54.5
/42.3 11
/11 RB11A_HUMAN Ras-related protein Rab-11A

6djl[8] C 3BP5_HUMAN SH3 domain-binding protein 5[224 aa] A 55.6
/41.6 18
/22 RB11A_HUMAN Ras-related protein Rab-11A

2gzd[4] C RFIP2_HUMAN Rab11 family-interacting protein 2[35 aa] A 42.9
/42.0 14
/14 RB11A_HUMAN Ras-related protein Rab-11A

2hv8[3] B RFIP3_HUMAN Rab11 family-interacting protein 3[54 aa] A 43.8
/42.0 16
/16 RB11A_HUMAN Ras-related protein Rab-11A

2hv8[3] B RFIP3_HUMAN Rab11 family-interacting protein 3[54 aa] A 66.7
/42.0 3
/3 RB11A_HUMAN Ras-related protein Rab-11A

4d0l[2] C PI4KB_HUMAN PHOSPHATIDYLINOSITOL 4-KINASE BETA[476 aa] D 30.0
/42.0 10
/11 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4d0m[6] F RFIP3_HUMAN RAB11 FAMILY-INTERACTING PROTEIN 3[32 aa] B 50.0
/42.0 4
/4 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4d0m[6] F RFIP3_HUMAN RAB11 FAMILY-INTERACTING PROTEIN 3[32 aa] D 25.0
/42.0 4
/4 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4uj5[1] D RAB3I_HUMAN RAB-3A-INTERACTING PROTEIN[154 aa] B 12.5
/42.0 8
/9 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

3qbt[4] E OCRL_HUMAN Inositol polyphosphate 5-phosphatase OCRL-1[130 aa.. A 30.0
/41.9 20
/20 RAB8A_HUMAN Ras-related protein Rab-8A

3sfv[1] B A5IFX1_LEGPC LidA protein, substrate of the Dot/Icm system[342 .. A 45.7
/40.3 35
/40 RAB1A_HUMAN Ras-related protein Rab-1A

3tnf[1] B Q5ZWZ3_LEGPH LidA[379 aa] A 46.4
/41.9 28
/28 RAB8A_HUMAN Ras-related protein Rab-8A

4lhx[6] E RAB3I_HUMAN Rab-3A-interacting protein[76 aa] A 50.0
/41.9 14
/14 RAB8A_HUMAN Ras-related protein Rab-8A

4lhx[6] F RAB3I_HUMAN Rab-3A-interacting protein[76 aa] A 50.0
/41.9 10
/10 RAB8A_HUMAN Ras-related protein Rab-8A

4li0[2] E R3GEF_HUMAN Guanine nucleotide exchange factor for Rab-3A[64 a.. A 50.0
/41.9 14
/14 RAB8A_HUMAN Ras-related protein Rab-8A

4li0[2] F R3GEF_HUMAN Guanine nucleotide exchange factor for Rab-3A[69 a.. A 57.1
/41.9 7
/7 RAB8A_HUMAN Ras-related protein Rab-8A

6zsi[4] C EHBP1_HUMAN EH domain-binding protein 1[130 aa] A 63.6
/41.9 11
/13 RAB8A_HUMAN Ras-related protein Rab-8A

7bwt[1] A A0A5K1V7S2_SALTM SPI-1 type III secretion system effector SopD[284 .. B 46.7
/41.9 15
/19 RAB8A_HUMAN Ras-related protein Rab-8A

4uj3[15] B RAB3I_HUMAN RAB-3A-INTERACTING PROTEIN[161 aa] A 33.3
/42.0 9
/10 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

6rir[12] C RIPL2_HUMAN RILP-like protein 2[32 aa] A 50.0
/41.5 10
/10 RAB8A_HUMAN Ras-related protein Rab-8A

4d0l[19] A PI4KB_HUMAN PHOSPHATIDYLINOSITOL 4-KINASE BETA[470 aa] B 33.3
/42.0 9
/10 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4d0m[12] S PI4KB_HUMAN PHOSPHATIDYLINOSITOL 4-KINASE BETA[470 aa] B 100.0
/42.0 1
/1 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

5fbq[2] A PI4KB_HUMAN PI4KB_HUMAN Phosphatidylinositol 4-kinase beta,Phosphatidylino.. B 50.0
/41.1 14
/14 RB11A_HUMAN Ras-related protein Rab-11A

6yx5[1] B DRRA_LEGPN Multifunctional virulence effector protein DrrA[33.. A 39.1
/41.2 23
/23 A0A1U7REJ8_MESAU Ras-related protein Rab-8A

4ojk[3] C KGP2_RAT cGMP-dependent protein kinase 2[37 aa] A 61.5
/42.0 13
/16 RB11B_HUMAN Ras-related protein Rab-11B

4ojk[2] D KGP2_RAT cGMP-dependent protein kinase 2[33 aa] A 66.7
/42.0 3
/4 RB11B_HUMAN Ras-related protein Rab-11B

6zay[2] B A16L1_MOUSE Autophagy-related protein 16-1[86 aa] A 62.5
/40.6 16
/19 RB33B_HUMAN Ras-related protein Rab-33B

6zay[2] D A16L1_MOUSE Autophagy-related protein 16-1[86 aa] A 75.0
/40.6 4
/4 RB33B_HUMAN Ras-related protein Rab-33B

5lef[4] C KI20A_MOUSE Kinesin-like protein KIF20A[49 aa] A 71.4
/39.5 7
/8 RAB6A_HUMAN Ras-related protein Rab-6A

3l0i[2] A Q29ST3_LEGPN DrrA[316 aa] B 70.0
/39.2 30
/35 RAB1A_HUMAN Ras-related protein Rab-1A

3tkl[1] B A5IFX1_LEGPC LidA protein, substrate of the Dot/Icm system[192 .. A 38.9
/40.3 18
/18 RAB1A_HUMAN Ras-related protein Rab-1A

4d0g[1] B RFIP1_HUMAN RAB11 FAMILY-INTERACTING PROTEIN 1[46 aa] A 33.3
/40.3 12
/12 RAB14_HUMAN RAS-RELATED PROTEIN RAB-14

4fmb[6] A VIRA_SHIFL Cysteine protease-like virA[351 aa] B 53.6
/40.3 28
/28 RAB1A_HUMAN Ras-related protein Rab-1A

4fmc[7] A O52121_ECOLX ROrf2[351 aa] B 59.3
/40.3 27
/27 RAB1A_HUMAN Ras-related protein Rab-1A

4hlq[5] A TBC20_HUMAN TBC1 domain family member 20[280 aa] B 65.2
/40.3 23
/23 RAB1B_HUMAN Ras-related protein Rab-1B

4i1o[4] D Q5ZSM7_LEGPH LepB[281 aa] A 63.2
/40.3 19
/19 RAB1B_HUMAN Ras-related protein Rab-1B

4iru[3] A Q5ZSM7_LEGPH LepB[296 aa] B 68.0
/40.3 25
/25 RAB1A_HUMAN Ras-related protein Rab-1A

4jvs[1] A G9EPL4_9GAMM Putative uncharacterized protein[279 aa] B 65.2
/40.3 23
/23 RAB1A_HUMAN Ras-related protein Rab-1A

5szh[4] A MICLK_HUMAN MICAL C-terminal-like protein[143 aa] B 40.0
/40.3 15
/22 RAB1B_HUMAN Ras-related protein Rab-1B

2zet[2] B MELPH_MOUSE Melanophilin[141 aa] A 55.6
/40.9 27
/38 RB27B_MOUSE Ras-related protein Rab-27B

6sku[1] A ANKX_LEGPH Phosphocholine transferase AnkX[785 aa] B 33.3
/40.1 27
/29 RAB1B_HUMAN Ras-related protein Rab-1B

3cue[5] A TRS23_YEAST Transport protein particle 23 kDa subunit[159 aa] F 70.0
/39.4 10
/14 YPT1_YEAST GTP-binding protein YPT1

7e8t[3] G TRS23_YEAST Trafficking protein particle complex subunit 23[16.. A 60.0
/36.3 15
/21 YPT32_YEAST GTP-binding protein YPT32/YPT11

3bc1[2] B SYTL2_HUMAN Synaptotagmin-like protein 2[52 aa] A 58.8
/39.6 17
/24 RB27A_MOUSE Ras-related protein Rab-27A

3bbp[8] D GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2[3.. A 71.4
/39.5 7
/7 RAB6A_HUMAN Ras-related protein Rab-6A

3cwz[1] B RA6I1_MOUSE Rab6-interacting protein 1[310 aa] A 69.2
/39.5 13
/14 RAB6A_HUMAN Ras-related protein Rab-6A

3cue[4] C BET5_YEAST Transport protein particle 18 kDa subunit[143 aa] F 100.0
/39.4 2
/2 YPT1_YEAST GTP-binding protein YPT1

8alk[1] A LEM3_LEGPH Phosphocholine hydrolase Lem3[447 aa] B 43.8
/39.3 16
/16 RAB1B_HUMAN Ras-related protein Rab-1B

2eqb[4] B SEC2_YEAST Rab guanine nucleotide exchange factor SEC2[93 aa].. A 60.0
/39.0 15
/15 SEC4_YEAST Ras-related protein SEC4

1ukv[2] A GDI1_YEAST Secretory pathway GDP dissociation inhibitor[442 a.. B 61.9
/38.8 21
/32 YPT1_YEAST GTP-binding protein YPT1

3cph[1] A GDI1_YEAST Rab GDP-dissociation inhibitor[441 aa] B 75.0
/39.0 16
/16 SEC4_YEAST Ras-related protein SEC4

6ekk[2] A DEN1A_HUMAN DENN domain-containing protein 1A[375 aa] C 53.6
/38.7 28
/28 RAB35_HUMAN Ras-related protein Rab-35

1z0k[2] B Q59EY8_HUMAN FYVE-finger-containing Rab5 effector protein raben.. A 38.9
/38.4 18
/19 RAB4A_HUMAN GTP-binding protein

3tw8[2] A DEN1B_HUMAN DENN domain-containing protein 1B[343 aa] B 53.3
/38.1 30
/30 RAB35_HUMAN Ras-related protein Rab-35

8ij9[1] C RB6I2_RAT ELKS/Rab6-interacting/CAST family member 1[71 aa] A 55.6
/38.2 18
/20 RAB6B_MOUSE Ras-related protein Rab-6B

8ij9[1] D RB6I2_RAT ELKS/Rab6-interacting/CAST family member 1[70 aa] B 57.1
/38.2 21
/23 RAB6B_MOUSE Ras-related protein Rab-6B

5lpn[2] B MICA1_HUMAN Protein-methionine sulfoxide oxidase MICAL1[132 aa.. A 57.1
/38.0 21
/26 RAB10_HUMAN Ras-related protein Rab-10

6if2[1] B RUSC2_HUMAN Iporin[195 aa] A 50.0
/38.0 12
/14 RAB35_HUMAN Ras-related protein Rab-35

6if3[1] A ACAP2_HUMAN Arf-GAP with coiled-coil, ANK repeat and PH domain.. B 56.2
/38.0 16
/19 RAB35_HUMAN Ras-related protein Rab-35

5oed[1] A Q6EAT3_SALCE GtgE[195 aa] B 53.8
/37.8 26
/26 RAB32_HUMAN Ras-related protein Rab-32

4cym[10] D ANR27_HUMAN ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27[167 aa.. A 38.5
/37.3 13
/13 RAB32_HUMAN RAS-RELATED PROTEIN RAB-32

4cym[10] D ANR27_HUMAN ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27[167 aa.. A 42.9
/37.3 14
/14 RAB32_HUMAN RAS-RELATED PROTEIN RAB-32

3cue[5] D BET3_YEAST Transport protein particle 22 kDa subunit[186 aa] F 33.3
/39.4 3
/3 YPT1_YEAST GTP-binding protein YPT1

3cue[4] E BET3_YEAST Transport protein particle 22 kDa subunit[188 aa] F 71.4
/39.4 7
/7 YPT1_YEAST GTP-binding protein YPT1

7e8t[3] K BET3_YEAST Trafficking protein particle complex subunit BET3[.. A 50.0
/36.3 2
/2 YPT32_YEAST GTP-binding protein YPT32/YPT11

7e8t[6] L BET3_YEAST Trafficking protein particle complex subunit BET3[.. A 66.7
/36.3 6
/6 YPT32_YEAST GTP-binding protein YPT32/YPT11

7ea3[2] F BET3_YEAST Trafficking protein particle complex subunit BET3[.. L 0.0
/36.3 1
/1 YPT32_YEAST GTP-binding protein YPT32/YPT11

7kmt[1] E BET3_YEAST Trafficking protein particle complex subunit BET3[.. H 0.0
/40.0 2
/2 YPT1_YEAST GTP-binding protein YPT1

7e8t[3] C TR120_YEAST Trafficking protein particle complex II-specific s.. A 31.2
/36.3 16
/20 YPT32_YEAST GTP-binding protein YPT32/YPT11

7e8t[6] J BET5_YEAST Trafficking protein particle complex subunit BET5[.. A 60.0
/36.3 5
/5 YPT32_YEAST GTP-binding protein YPT32/YPT11

7kmt[1] C BET5_YEAST Trafficking protein particle complex subunit BET5[.. H 75.0
/40.0 4
/4 YPT1_YEAST GTP-binding protein YPT1

7u05[3] G TRS23_YEAST Trafficking protein particle complex subunit 23[17.. K 66.7
/36.3 15
/20 YPT32_YEAST GTP-binding protein YPT32/YPT11

7u05[3] N TR120_YEAST Trafficking protein particle complex II-specific s.. K 16.7
/36.3 18
/20 YPT32_YEAST GTP-binding protein YPT32/YPT11

8a4a[1] A REP15_HUMAN Rab15 effector protein[207 aa] B 40.0
/37.3 15
/16 RAB3C_BOVIN Ras-related protein Rab-3C

8a4b[2] A REP15_HUMAN Rab15 effector protein[208 aa] B 40.0
/35.4 15
/15 RAB3B_HUMAN Ras-related protein Rab-3B

8a4c[2] A REP15_HUMAN Rab15 effector protein[205 aa] B 43.8
/36.1 16
/16 RAB3B_HUMAN Ras-related protein Rab-3B

1ibr[2] B IMB1_HUMAN Importin beta-1 subunit[458 aa] A 29.6
/34.2 27
/29 RAN_HUMAN GTP-binding nuclear protein RAN

3ea5[2] B IMB1_YEAST Importin subunit beta-1[859 aa] A 26.8
/34.0 41
/43 RAN_HUMAN GTP-binding nuclear protein Ran

1zbd[2] B RP3A_RAT RABPHILIN-3A[124 aa] A 50.0
/34.0 22
/32 RAB3A_RAT RABPHILIN-3A

1zbd[2] B RP3A_RAT RABPHILIN-3A[124 aa] A 11.1
/34.0 9
/11 RAB3A_RAT RABPHILIN-3A

1k5d[8] B RANG_HUMAN Ran-specific GTPase-activating protein[146 aa] A 21.7
/34.0 23
/47 RAN_HUMAN GTP-binding nuclear protein RAN

1k5d[8] C RNA1_SCHPO Ran GTPase activating protein 1[344 aa] A 50.0
/34.0 20
/20 RAN_HUMAN GTP-binding nuclear protein RAN

1qbk[2] A TNPO1_HUMAN KARYOPHERIN BETA2[880 aa] B 36.8
/34.0 38
/41 RAN_HUMAN RAN

1rrp[4] B RBP2_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP358[134 aa] A 10.5
/34.0 19
/43 RAN_HUMAN RAN

1rrp[4] D RBP2_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP358[134 aa] A 100.0
/34.0 1
/1 RAN_HUMAN RAN

5cll[6] B RBP2_HUMAN E3 SUMO-protein ligase RanBP2[139 aa] A 27.3
/34.0 22
/34 RAN_HUMAN GTP-binding nuclear protein Ran

1wa5[1] B A0A6A5Q590_YEASX SRP1 isoform 1[466 aa] A 20.0
/34.0 5
/5 RAN_CANLF GTP-binding nuclear protein Ran

1wa5[1] C CSE1_YEAST Importin alpha re-exporter[950 aa] A 43.8
/34.0 32
/32 RAN_CANLF GTP-binding nuclear protein Ran

3a6p[4] A XPO5_HUMAN Exportin-5[1072 aa] C 18.5
/34.0 27
/29 RAN_CANFA GTP-binding nuclear protein Ran

3gj3[1] B NU153_RAT Nuclear pore complex protein Nup153[27 aa] A 28.6
/34.0 14
/14 RAN_HUMAN GTP-binding nuclear protein Ran

3w3z[1] A IMB3_YEAST Importin subunit beta-3[1013 aa] B 37.5
/34.0 24
/24 RAN_CANFA GTP-binding nuclear protein Ran

4gmx[37] B YRB1_YEAST Ran-specific GTPase-activating protein 1[123 aa] A 11.1
/34.0 9
/35 RAN_HUMAN GTP-binding nuclear protein Ran

4gmx[31] C XPO1_YEAST Exportin-1[1015 aa] A 33.3
/34.0 27
/31 RAN_HUMAN GTP-binding nuclear protein Ran

6a38[6] C XPO1_YEAST Exportin-1[996 aa] A 29.2
/34.0 24
/28 RAN_HUMAN GTP-binding nuclear protein Ran

4ol0[1] B TNPO3_HUMAN Transportin-3[902 aa] A 34.4
/34.0 32
/32 RAN_HUMAN GTP-binding nuclear protein Ran

7mnx[6] B RBP2_HUMAN E3 SUMO-protein ligase RanBP2[130 aa] A 16.7
/34.0 18
/48 RAN_HUMAN GTP-binding nuclear protein Ran

7mny[1] H RBP2_HUMAN E3 SUMO-protein ligase RanBP2[134 aa] G 11.1
/34.0 18
/41 RAN_HUMAN GTP-binding nuclear protein Ran

7mnz[6] B RBP2_HUMAN E3 SUMO-protein ligase RanBP2[138 aa] A 11.8
/34.0 17
/43 RAN_HUMAN GTP-binding nuclear protein Ran

7mo0[1] B NUP50_HUMAN Nuclear pore complex protein Nup50[126 aa] A 23.1
/34.0 13
/40 RAN_HUMAN GTP-binding nuclear protein Ran

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

NUCLEOTIDE

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

3a6p[2] D pre-microRNA C 100.0
/34.0 1
/1 RAN_CANFA GTP-binding nuclear protein Ran

3a6p[2] E pre-microRNA C 0.0
/34.0 1
/1 RAN_CANFA GTP-binding nuclear protein Ran

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

COMPOUND

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

4phh[4] E 2UK
5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phos.. A 90.0
/69.5 20
/20 YPT7_YEAST GTP-binding protein YPT7

4phg[1] C 2UJ
N-[3-(propanoylamino)propyl]guanosine 5'-(tetrahyd.. A 91.3
/68.4 23
/23 YPT7_YEAST GTP-binding protein YPT7

4phf[1] B 2UH
N-[3-(propanoylamino)propyl]guanosine 5'-(trihydro.. A 87.5
/67.3 16
/16 YPT7_YEAST GTP-binding protein YPT7

1s8f[14] E BEZ
BENZOIC ACID[9 atoms] A 50.0
/58.2 2
/2 RAB9A_CANFA Ras-related protein Rab-9A

1s8f[2] G BEZ
BENZOIC ACID[9 atoms] B 100.0
/57.1 1
/1 RAB9A_CANFA Ras-related protein Rab-9A

2hei[2] D D1D
(4S,5S)-1,2-DITHIANE-4,5-DIOL[8 atoms] A 63.6
/44.5 11
/11 RAB5B_HUMAN Ras-related protein Rab-5B

2efe[2] E GNH
AMINOPHOSPHONIC ACID-GUANYLATE ESTER[28 atoms] B 80.0
/42.7 15
/16 Q9SN68_ARATH Small GTP-binding protein-like

6yx5[1] E GLC
alpha-D-glucopyranose[12 atoms] A 66.7
/41.2 6
/7 A0A1U7REJ8_MESAU Ras-related protein Rab-8A

6yx5[1] F LJN
[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-.. A 0.0
/41.2 1
/1 A0A1U7REJ8_MESAU Ras-related protein Rab-8A

7opq[2] C 06D
1-[(2~{S})-2-(4-methoxyphenyl)pyrrolidin-1-yl]prop.. A 50.0
/40.9 4
/8 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opr[2] L 05Y
~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]pro.. A 42.9
/40.9 7
/10 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

1oiw[1] B GSP
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE[32 atom.. A 69.6
/42.0 23
/23 R11A_HUMAN RAS-RELATED PROTEIN RAB-11A

2ffq[1] C GSP
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE[32 atom.. A 80.0
/38.3 25
/25 RAB6B_HUMAN Ras-related protein Rab-6B

4d0l[20] H GSP
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE[32 atom.. B 69.6
/42.0 23
/23 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

7ezd[2] D GSP
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE[32 atom.. B 73.7
/40.3 19
/19 A0A135VL07_9ARCH Chains: A,B

3nkv[2] F AMP
ADENOSINE MONOPHOSPHATE[22 atoms] A 60.0
/40.3 5
/5 RAB1B_HUMAN Ras-related protein Rab-1B

1ek0[1] E GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms] A 0.0
/40.6 3
/5 YPT51_YEAST PROTEIN (GTP-BINDING PROTEIN YPT51)

1g16[171] G GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms] A 73.7
/38.8 19
/19 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1tu4[4] K GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms] A 60.0
/43.7 5
/5 RAB5A_HUMAN Ras-related protein Rab-5A

2iey[2] C GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms] B 100.0
/41.9 1
/1 RB27B_MOUSE Ras-related protein Rab-27B

8alk[1] H OJU
2-[[[5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3.. B 0.0
/39.3 1
/1 RAB1B_HUMAN Ras-related protein Rab-1B

7eq2[2] E NCO
COBALT HEXAMMINE(III)[7 atoms] A 50.0
/39.3 6
/6 RAB1A_HUMAN Ras-related protein Rab-1A

7eq2[2] F NCO
COBALT HEXAMMINE(III)[7 atoms] A 0.0
/39.3 3
/3 RAB1A_HUMAN Ras-related protein Rab-1A

6y7g[1] G BTB
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PR.. B 50.0
/38.4 4
/5 RAB3C_HUMAN Ras-related protein Rab-3C

1n6l[88] C GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 72.7
/43.7 22
/22 RAB5A_HUMAN Ras-related protein Rab-5A

5xr7[8] C GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] A 76.2
/40.9 21
/21 RAA1A_ARATH Ras-related protein RABA1a

4cym[10] G GCP
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER[32 at.. A 82.6
/37.3 23
/23 RAB32_HUMAN RAS-RELATED PROTEIN RAB-32

1ek0[182] D GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato.. A 68.2
/40.6 22
/22 YPT51_YEAST PROTEIN (GTP-BINDING PROTEIN YPT51)

3rwm[1] D GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato.. A 0.0
/35.0 1
/3 YPT32_YEAST GTP-binding protein YPT32/YPT11

7opp[6] C GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato.. A 75.0
/41.1 24
/24 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

8a4a[1] C GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER[32 ato.. B 70.8
/37.3 24
/24 RAB3C_BOVIN Ras-related protein Rab-3C

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

4phg[1] D YT3
YTTRIUM (III) ION[1 atoms] A 0.0
/68.4 1
/1 YPT7_YEAST GTP-binding protein YPT7

4phg[1] E YT3
YTTRIUM (III) ION[1 atoms] A 100.0
/68.4 2
/2 YPT7_YEAST GTP-binding protein YPT7

4phg[1] F YT3
YTTRIUM (III) ION[1 atoms] A 100.0
/68.4 1
/1 YPT7_YEAST GTP-binding protein YPT7

1s8f[2] C SR
STRONTIUM ION[1 atoms] A 0.0
/58.2 1
/1 RAB9A_CANFA Ras-related protein Rab-9A

1s8f[4] I SR
STRONTIUM ION[1 atoms] B 66.7
/57.1 3
/3 RAB9A_CANFA Ras-related protein Rab-9A

1g16[4] E CO
COBALT (II) ION[1 atoms] A 0.0
/38.8 1
/1 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[3] F CO
COBALT (II) ION[1 atoms] A 0.0
/38.8 2
/2 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] O CO
COBALT (II) ION[1 atoms] D 0.0
/38.8 1
/1 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1tu4[8] E CO
COBALT (II) ION[1 atoms] A 0.0
/43.7 1
/1 RAB5A_HUMAN Ras-related protein Rab-5A

1tu4[8] H CO
COBALT (II) ION[1 atoms] A 0.0
/43.7 2
/2 RAB5A_HUMAN Ras-related protein Rab-5A

1ek0[1] C NI
NICKEL (II) ION[1 atoms] A 0.0
/40.6 2
/2 YPT51_YEAST PROTEIN (GTP-BINDING PROTEIN YPT51)

2f9m[1] C NI
NICKEL (II) ION[1 atoms] A 33.3
/42.0 3
/3 RB11B_HUMAN RAB11B, member RAS oncogene family

1vg9[4] J K
POTASSIUM ION[1 atoms] B 100.0
/100.0 1
/1 RAB7_RAT Ras-related protein Rab-7

4iru[1] Y K
POTASSIUM ION[1 atoms] B 50.0
/40.3 2
/2 RAB1A_HUMAN Ras-related protein Rab-1A

3nkv[1] E BA
BARIUM ION[1 atoms] A 66.7
/40.3 3
/3 RAB1B_HUMAN Ras-related protein Rab-1B

3nkv[1] I BA
BARIUM ION[1 atoms] B 0.0
/39.9 2
/2 RAB1B_HUMAN Ras-related protein Rab-1B

2iez[4] E CA
CALCIUM ION[1 atoms] A 100.0
/40.5 1
/1 RB27B_MOUSE Ras-related protein Rab-27B

2il1[4] C CA
CALCIUM ION[1 atoms] A 0.0
/39.1 2
/2 RAB43_HUMAN Rab12

4g01[1] C CA
CALCIUM ION[1 atoms] B 0.0
/42.7 1
/1 RAF2B_ARATH Ras-related protein RABF2b

8alk[1] G CA
CALCIUM ION[1 atoms] B 66.7
/39.3 3
/3 RAB1B_HUMAN Ras-related protein Rab-1B

6s5h[1] M BR
BROMIDE ION[1 atoms] A 100.0
/38.9 1
/1 RAB38_HUMAN Ras-related protein Rab-38

6s5h[1] N BR
BROMIDE ION[1 atoms] A 0.0
/38.9 1
/1 RAB38_HUMAN Ras-related protein Rab-38

6s5h[1] O BR
BROMIDE ION[1 atoms] A 0.0
/38.9 1
/1 RAB38_HUMAN Ras-related protein Rab-38

1ek0[427] B MG
MAGNESIUM ION[1 atoms] A 50.0
/40.6 2
/2 YPT51_YEAST PROTEIN (GTP-BINDING PROTEIN YPT51)

1z08[1] M MG
MAGNESIUM ION[1 atoms] D 0.0
/36.4 1
/2 RAB21_HUMAN Ras-related protein Rab-21

2rhd[2] C MG
MAGNESIUM ION[1 atoms] A 0.0
/40.9 1
/1 Q7YYW6_CRYPV Small GTP binding protein rab1a

4fmd[1] Q MG
MAGNESIUM ION[1 atoms] F 66.7
/42.3 3
/3 RAB1A_HUMAN Ras-related protein Rab-1A

2gf9[9] D UNX
UNKNOWN ATOM OR ION[1 atoms] A 50.0
/35.4 2
/2 RAB3D_HUMAN Ras-related protein Rab-3D

2il1[2] E UNX
UNKNOWN ATOM OR ION[1 atoms] A 33.3
/39.1 3
/3 RAB43_HUMAN Rab12

2il1[3] F UNX
UNKNOWN ATOM OR ION[1 atoms] A 0.0
/39.1 1
/1 RAB43_HUMAN Rab12

2il1[7] G UNX
UNKNOWN ATOM OR ION[1 atoms] A 50.0
/39.1 2
/2 RAB43_HUMAN Rab12

2il1[2] I UNX
UNKNOWN ATOM OR ION[1 atoms] A 0.0
/39.1 2
/2 RAB43_HUMAN Rab12

2ocb[1] E UNX
UNKNOWN ATOM OR ION[1 atoms] A 25.0
/57.1 4
/4 RAB9B_HUMAN Ras-related protein Rab-9B

2ocb[1] F UNX
UNKNOWN ATOM OR ION[1 atoms] A 33.3
/57.1 3
/3 RAB9B_HUMAN Ras-related protein Rab-9B

2ocb[1] I UNX
UNKNOWN ATOM OR ION[1 atoms] A 100.0
/57.1 2
/2 RAB9B_HUMAN Ras-related protein Rab-9B

2oil[1] D UNX
UNKNOWN ATOM OR ION[1 atoms] A 50.0
/39.6 2
/2 RAB25_HUMAN Ras-related protein Rab-25

3dz8[2] C UNX
UNKNOWN ATOM OR ION[1 atoms] A 100.0
/36.1 4
/4 RAB3B_HUMAN Ras-related protein Rab-3B

3dz8[2] D UNX
UNKNOWN ATOM OR ION[1 atoms] A 0.0
/36.1 3
/3 RAB3B_HUMAN Ras-related protein Rab-3B

3dz8[2] E UNX
UNKNOWN ATOM OR ION[1 atoms] A 0.0
/36.1 1
/1 RAB3B_HUMAN Ras-related protein Rab-3B

4z8y[2] E ZN
ZINC ION[1 atoms] A 0.0
/38.6 2
/2 SEC4_YEAST Ras-related protein SEC4

5ub8[2] C ZN
ZINC ION[1 atoms] A 50.0
/35.5 2
/2 Q59KX4_CANAL Likely rab family GTP-binding protein

5ub8[2] D ZN
ZINC ION[1 atoms] A 50.0
/35.5 2
/2 Q59KX4_CANAL Likely rab family GTP-binding protein

1oix[1] E CL
CHLORIDE ION[1 atoms] A 25.0
/42.0 4
/4 R11A_HUMAN RAS-RELATED PROTEIN RAB-11A

1s8f[2] J CL
CHLORIDE ION[1 atoms] B 0.0
/57.1 4
/4 RAB9A_CANFA Ras-related protein Rab-9A

4hav[3] F CL
CHLORIDE ION[1 atoms] A 0.0
/34.2 2
/2 RAN_HUMAN GTP-binding nuclear protein Ran

4hb2[2] H CL
CHLORIDE ION[1 atoms] A 25.0
/34.2 4
/4 RAN_HUMAN GTP-binding nuclear protein Ran

4phh[2] J CL
CHLORIDE ION[1 atoms] B 80.0
/69.3 5
/5 YPT7_YEAST GTP-binding protein YPT7

5yst[2] H CL
CHLORIDE ION[1 atoms] A 50.0
/34.2 4
/4 RAN_HUMAN GTP-binding nuclear protein Ran

5ytb[1] H CL
CHLORIDE ION[1 atoms] A 0.0
/34.0 1
/1 RAN_HUMAN GTP-binding nuclear protein Ran

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

HOMO

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1s8f[8] A RAB9A_CANFA Ras-related protein Rab-9A[168 aa] A 50.0
/58.2 2
/2 RAB9A_CANFA Ras-related protein Rab-9A

1s8f[4] B RAB9A_CANFA Ras-related protein Rab-9A[173 aa] A 66.7
/58.2 18
/18 RAB9A_CANFA Ras-related protein Rab-9A

1tu4[16] B RAB5A_HUMAN Ras-related protein Rab-5A[162 aa] A 60.0
/43.7 15
/15 RAB5A_HUMAN Ras-related protein Rab-5A

1tu4[16] B RAB5A_HUMAN Ras-related protein Rab-5A[162 aa] A 75.0
/43.7 8
/10 RAB5A_HUMAN Ras-related protein Rab-5A

1tu4[4] A RAB5A_HUMAN Ras-related protein Rab-5A[169 aa] B 40.0
/44.5 10
/10 RAB5A_HUMAN Ras-related protein Rab-5A

2hei[1] B RAB5B_HUMAN Ras-related protein Rab-5B[165 aa] A 60.0
/44.5 15
/15 RAB5B_HUMAN Ras-related protein Rab-5B

2hei[1] A RAB5B_HUMAN Ras-related protein Rab-5B[163 aa] B 50.0
/44.2 14
/17 RAB5B_HUMAN Ras-related protein Rab-5B

1oiv[4] B R11A_HUMAN RAS-RELATED PROTEIN RAB-11A[168 aa] A 44.4
/42.7 18
/20 R11A_HUMAN RAS-RELATED PROTEIN RAB-11A

5ez5[2] B RB11A_HUMAN Ras-related protein Rab-11A[168 aa] A 40.0
/42.0 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

1z0a[4] B RAB2A_HUMAN Ras-related protein Rab-2A[163 aa] A 75.0
/40.8 8
/14 RAB2A_HUMAN Ras-related protein Rab-2A

1z0a[6] C RAB2A_HUMAN Ras-related protein Rab-2A[169 aa] A 33.3
/40.8 6
/6 RAB2A_HUMAN Ras-related protein Rab-2A

2iez[1] D RB27B_MOUSE Ras-related protein Rab-27B[173 aa] C 46.5
/41.3 43
/46 RB27B_MOUSE Ras-related protein Rab-27B

7opp[6] B SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R.. A 47.1
/41.1 17
/31 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

2y8e[2] B O18334_DROME RAB-PROTEIN 6[167 aa] A 38.5
/40.8 13
/13 O18334_DROME RAB-PROTEIN 6

2f7s[9] B RB27B_HUMAN Ras-related protein Rab-27B[176 aa] A 53.1
/42.0 49
/59 RB27B_HUMAN Ras-related protein Rab-27B

2iey[2] A RB27B_MOUSE Ras-related protein Rab-27B[164 aa] B 50.0
/41.9 4
/4 RB27B_MOUSE Ras-related protein Rab-27B

6o62[2] A SEC4_CANAL Ras-related protein SEC4[169 aa] A 44.0
/40.4 25
/30 SEC4_CANAL Ras-related protein SEC4

6huf[16] D RB27A_HUMAN Ras-related protein Rab-27A[171 aa] A 50.0
/40.3 6
/6 RB27A_HUMAN Ras-related protein Rab-27A

6huf[16] I RB27A_HUMAN Ras-related protein Rab-27A[171 aa] A 75.0
/40.3 4
/4 RB27A_HUMAN Ras-related protein Rab-27A

7ezb[1] B A0A135VL07_9ARCH Thorarchaeota Rab[171 aa] A 22.2
/40.1 18
/22 A0A135VL07_9ARCH Thorarchaeota Rab

2il1[2] A RAB43_HUMAN Rab12[163 aa] A 18.2
/39.1 11
/11 RAB43_HUMAN Rab12

1yu9[2] A RAB4A_HUMAN GTP-binding protein[175 aa] A 66.7
/39.0 9
/12 RAB4A_HUMAN GTP-binding protein

1g16[1] B SEC4_YEAST RAS-RELATED PROTEIN SEC4[161 aa] A 0.0
/38.8 1
/1 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] A SEC4_YEAST RAS-RELATED PROTEIN SEC4[159 aa] B 0.0
/38.8 1
/1 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] C SEC4_YEAST RAS-RELATED PROTEIN SEC4[167 aa] B 66.7
/38.8 3
/3 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] D SEC4_YEAST RAS-RELATED PROTEIN SEC4[160 aa] B 0.0
/38.8 2
/2 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] B SEC4_YEAST RAS-RELATED PROTEIN SEC4[161 aa] C 66.7
/39.0 3
/4 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] D SEC4_YEAST RAS-RELATED PROTEIN SEC4[160 aa] C 81.8
/39.0 11
/11 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[2] B SEC4_YEAST RAS-RELATED PROTEIN SEC4[161 aa] D 0.0
/38.8 2
/2 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g16[1] C SEC4_YEAST RAS-RELATED PROTEIN SEC4[167 aa] D 40.0
/38.8 10
/13 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1g17[1] A SEC4_YEAST RAS-RELATED PROTEIN SEC4[168 aa] B 0.0
/39.0 1
/1 SEC4_YEAST RAS-RELATED PROTEIN SEC4

1z08[2] D RAB21_HUMAN Ras-related protein Rab-21[166 aa] C 9.1
/36.4 11
/12 RAB21_HUMAN Ras-related protein Rab-21

3dz8[2] A RAB3B_HUMAN Ras-related protein Rab-3B[178 aa] A 16.7
/36.1 18
/27 RAB3B_HUMAN Ras-related protein Rab-3B

5ub8[2] A Q59KX4_CANAL Likely rab family GTP-binding protein[174 aa] A 42.9
/35.5 7
/17 Q59KX4_CANAL Likely rab family GTP-binding protein

3rwo[2] B YPT32_YEAST GTP-binding protein YPT32/YPT11[170 aa] A 58.3
/35.0 12
/12 YPT32_YEAST GTP-binding protein YPT32/YPT11

1zbd[2] A RAB3A_RAT RABPHILIN-3A[177 aa] A 50.0
/34.0 2
/2 RAB3A_RAT RABPHILIN-3A

1rrp[4] C RAN_HUMAN RAN[180 aa] A 0.0
/34.0 2
/2 RAN_HUMAN RAN

1rrp[4] C RAN_HUMAN RAN[180 aa] A 40.0
/34.0 5
/6 RAN_HUMAN RAN

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

207 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1vg9[4] L P33
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL[22 atoms] B 100.0
/100.0 5
/5 RAB7_RAT Ras-related protein Rab-7

4hlq[13] N BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] B 88.9
/40.3 9
/9 RAB1B_HUMAN Ras-related protein Rab-1B

5jcz[3] I BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] A 85.7
/42.7 7
/7 RB11A_HUMAN Ras-related protein Rab-11A

1vg0[1] G PG4
TETRAETHYLENE GLYCOL[13 atoms] B 100.0
/100.0 4
/4 RAB7_RAT Ras-related protein Rab-7

4uj3[1] PA PG4
TETRAETHYLENE GLYCOL[13 atoms] V 100.0
/42.2 1
/1 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

1z0j[1] E TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] A 16.7
/42.4 6
/6 RB22A_MOUSE Ras-related protein Rab-22A

2bcg[1] G TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] B 0.0
/38.8 1
/1 YPT1_YEAST GTP-binding protein YPT1

2bme[3] F TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] A 40.0
/39.6 5
/5 RAB4A_HUMAN RAS-RELATED PROTEIN RAB4A

2bme[1] G TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] A 50.0
/39.6 4
/4 RAB4A_HUMAN RAS-RELATED PROTEIN RAB4A

6stg[1] G TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL[8 atoms] B 0.0
/42.0 3
/3 RAB8A_HUMAN Ras-related protein Rab-8A

2d7c[1] G MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] A 20.0
/42.0 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

2hv8[1] O MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] C 60.0
/42.0 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

2hv8[1] J 2ME
METHOXYETHANE[4 atoms] C 50.0
/42.0 2
/2 RB11A_HUMAN Ras-related protein Rab-11A

4i1o[3] L PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 50.0
/40.3 4
/4 RAB1B_HUMAN Ras-related protein Rab-1B

4i1o[1] Q PEG
DI(HYDROXYETHYL)ETHER[7 atoms] C 60.0
/40.3 5
/5 RAB1B_HUMAN Ras-related protein Rab-1B

4i1o[2] R PEG
DI(HYDROXYETHYL)ETHER[7 atoms] C 57.1
/40.3 7
/7 RAB1B_HUMAN Ras-related protein Rab-1B

5szj[1] E PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 0.0
/38.0 1
/1 RAB10_HUMAN Ras-related protein Rab-10

6zay[1] G PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 66.7
/40.6 6
/6 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] H PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 0.0
/40.6 3
/3 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] Q PEG
DI(HYDROXYETHYL)ETHER[7 atoms] C 25.0
/40.6 4
/4 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] S PEG
DI(HYDROXYETHYL)ETHER[7 atoms] C 25.0
/40.6 4
/4 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] U PEG
DI(HYDROXYETHYL)ETHER[7 atoms] C 100.0
/40.6 3
/3 RB33B_HUMAN Ras-related protein Rab-33B

6zsi[2] F PEG
DI(HYDROXYETHYL)ETHER[7 atoms] A 33.3
/41.9 6
/6 RAB8A_HUMAN Ras-related protein Rab-8A

7bwt[1] C PEG
DI(HYDROXYETHYL)ETHER[7 atoms] B 100.0
/41.9 2
/2 RAB8A_HUMAN Ras-related protein Rab-8A

1tu4[17] R SO4
SULFATE ION[5 atoms] A 100.0
/43.7 1
/1 RAB5A_HUMAN Ras-related protein Rab-5A

1tu4[4] R SO4
SULFATE ION[5 atoms] B 100.0
/44.5 1
/1 RAB5A_HUMAN Ras-related protein Rab-5A

1yu9[5] C SO4
SULFATE ION[5 atoms] A 100.0
/39.0 3
/3 RAB4A_HUMAN GTP-binding protein

2hv8[2] M SO4
SULFATE ION[5 atoms] C 100.0
/42.0 1
/1 RB11A_HUMAN Ras-related protein Rab-11A

2y8e[1] C SO4
SULFATE ION[5 atoms] A 50.0
/40.8 2
/3 O18334_DROME RAB-PROTEIN 6

2y8e[1] F SO4
SULFATE ION[5 atoms] B 100.0
/40.8 1
/2 O18334_DROME RAB-PROTEIN 6

2y8e[1] G SO4
SULFATE ION[5 atoms] B 33.3
/40.8 3
/3 O18334_DROME RAB-PROTEIN 6

2zet[2] I SO4
SULFATE ION[5 atoms] A 100.0
/40.9 1
/1 RB27B_MOUSE Ras-related protein Rab-27B

3l0i[3] F SO4
SULFATE ION[5 atoms] B 83.3
/39.2 6
/6 RAB1A_HUMAN Ras-related protein Rab-1A

3qbt[4] Q SO4
SULFATE ION[5 atoms] A 75.0
/41.9 4
/4 RAB8A_HUMAN Ras-related protein Rab-8A

4lhx[4] G SO4
SULFATE ION[5 atoms] A 100.0
/41.9 7
/7 RAB8A_HUMAN Ras-related protein Rab-8A

4lhx[3] I SO4
SULFATE ION[5 atoms] B 50.0
/41.9 2
/2 RAB8A_HUMAN Ras-related protein Rab-8A

4uj3[1] IA SO4
SULFATE ION[5 atoms] M 0.0
/42.6 3
/3 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4uj5[1] G SO4
SULFATE ION[5 atoms] A 50.0
/41.6 4
/4 RB11A_HUMAN RAS-RELATED PROTEIN RAB-11A

5ldd[1] H SO4
SULFATE ION[5 atoms] C 80.0
/85.1 5
/5 G0SGE1_CHATD Rab small monomeric GTPase-like protein

5lef[2] G SO4
SULFATE ION[5 atoms] A 0.0
/39.5 2
/2 RAB6A_HUMAN Ras-related protein Rab-6A

5lef[2] L SO4
SULFATE ION[5 atoms] B 50.0
/40.3 6
/6 RAB6A_HUMAN Ras-related protein Rab-6A

5xr4[1] G SO4
SULFATE ION[5 atoms] B 100.0
/42.0 5
/5 RAA1A_ARATH Ras-related protein RABA1a

6ekk[1] R SO4
SULFATE ION[5 atoms] C 33.3
/38.7 3
/3 RAB35_HUMAN Ras-related protein Rab-35

1r2q[2] D GOL
GLYCEROL[6 atoms] A 0.0
/43.7 2
/2 RAB5A_HUMAN Ras-related protein Rab-5A

1r2q[18] E GOL
GLYCEROL[6 atoms] A 100.0
/43.7 1
/2 RAB5A_HUMAN Ras-related protein Rab-5A

1r2q[3] F GOL
GLYCEROL[6 atoms] A 0.0
/43.7 4
/4 RAB5A_HUMAN Ras-related protein Rab-5A

1r2q[4] I GOL
GLYCEROL[6 atoms] A 33.3
/43.7 6
/6 RAB5A_HUMAN Ras-related protein Rab-5A

3bfk[1] I GOL
GLYCEROL[6 atoms] B 50.0
/38.6 10
/10 Q76NM4_PLAF7 Small GTPase Rab11

3tso[2] H GOL
GLYCEROL[6 atoms] A 66.7
/39.6 6
/6 RAB25_HUMAN Ras-related protein Rab-25

4gmx[2] L GOL
GLYCEROL[6 atoms] A 50.0
/34.0 2
/4 RAN_HUMAN GTP-binding nuclear protein Ran

4iru[4] M GOL
GLYCEROL[6 atoms] B 100.0
/40.3 1
/1 RAB1A_HUMAN Ras-related protein Rab-1A

4lx0[1] H GOL
GLYCEROL[6 atoms] A 40.0
/42.7 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

4wvf[1] G GOL
GLYCEROL[6 atoms] A 20.0
/34.0 5
/5 RAN_HUMAN GTP-binding nuclear protein Ran

5jcz[1] N GOL
GLYCEROL[6 atoms] A 50.0
/42.7 2
/3 RB11A_HUMAN Ras-related protein Rab-11A

5jcz[1] Q GOL
GLYCEROL[6 atoms] A 0.0
/42.7 1
/1 RB11A_HUMAN Ras-related protein Rab-11A

5lef[1] H GOL
GLYCEROL[6 atoms] A 0.0
/39.5 4
/4 RAB6A_HUMAN Ras-related protein Rab-6A

6l6o[1] C GOL
GLYCEROL[6 atoms] A 50.0
/40.1 4
/5 A0A109NYM0_LEIDO Rab5a

6rir[1] G GOL
GLYCEROL[6 atoms] A 80.0
/41.5 5
/5 RAB8A_HUMAN Ras-related protein Rab-8A

6whe[1] G GOL
GLYCEROL[6 atoms] B 0.0
/41.2 2
/2 RAB8A_HUMAN Ras-related protein Rab-8A

7bwt[5] M GOL
GLYCEROL[6 atoms] B 75.0
/41.9 4
/4 RAB8A_HUMAN Ras-related protein Rab-8A

7opq[2] F GOL
GLYCEROL[6 atoms] A 40.0
/40.9 5
/5 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opq[2] G GOL
GLYCEROL[6 atoms] A 60.0
/40.9 5
/5 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opq[4] H GOL
GLYCEROL[6 atoms] A 33.3
/40.9 6
/6 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opq[4] J GOL
GLYCEROL[6 atoms] A 100.0
/40.9 1
/3 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opq[1] K GOL
GLYCEROL[6 atoms] A 16.7
/40.9 6
/6 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

7opr[2] K GOL
GLYCEROL[6 atoms] A 80.0
/40.9 5
/7 SYTL2_HUMAN RB27A_HUMAN Synaptotagmin-like protein 2,Ras-related protein R..

1oiv[1] E EDO
1,2-ETHANEDIOL[4 atoms] B 0.0
/42.7 4
/4 R11A_HUMAN RAS-RELATED PROTEIN RAB-11A

4gmx[17] F EDO
1,2-ETHANEDIOL[4 atoms] A 25.0
/34.0 4
/4 RAN_HUMAN GTP-binding nuclear protein Ran

4hay[1] J EDO
1,2-ETHANEDIOL[4 atoms] A 0.0
/34.2 1
/1 RAN_HUMAN GTP-binding nuclear protein Ran

4kyi[1] N EDO
1,2-ETHANEDIOL[4 atoms] B 50.0
/44.3 6
/6 RAB5C_HUMAN Ras-related protein Rab-5C

4kyi[2] O EDO
1,2-ETHANEDIOL[4 atoms] B 50.0
/44.3 4
/4 RAB5C_HUMAN Ras-related protein Rab-5C

5jcz[2] J EDO
1,2-ETHANEDIOL[4 atoms] A 70.0
/42.7 10
/10 RB11A_HUMAN Ras-related protein Rab-11A

5jcz[1] K EDO
1,2-ETHANEDIOL[4 atoms] A 50.0
/42.7 2
/2 RB11A_HUMAN Ras-related protein Rab-11A

5jcz[2] L EDO
1,2-ETHANEDIOL[4 atoms] A 0.0
/42.7 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

5jcz[4] P EDO
1,2-ETHANEDIOL[4 atoms] A 0.0
/42.7 1
/1 RB11A_HUMAN Ras-related protein Rab-11A

6a38[5] G EDO
1,2-ETHANEDIOL[4 atoms] A 25.0
/34.0 4
/4 RAN_HUMAN GTP-binding nuclear protein Ran

6s5h[1] C EDO
1,2-ETHANEDIOL[4 atoms] A 0.0
/38.9 2
/2 RAB38_HUMAN Ras-related protein Rab-38

6s5h[1] F EDO
1,2-ETHANEDIOL[4 atoms] A 33.3
/38.9 3
/3 RAB38_HUMAN Ras-related protein Rab-38

6s5h[1] G EDO
1,2-ETHANEDIOL[4 atoms] A 100.0
/38.9 1
/1 RAB38_HUMAN Ras-related protein Rab-38

6zay[1] P EDO
1,2-ETHANEDIOL[4 atoms] C 33.3
/40.6 3
/4 RB33B_HUMAN Ras-related protein Rab-33B

1oix[1] C PO4
PHOSPHATE ION[5 atoms] A 85.7
/42.0 7
/7 R11A_HUMAN RAS-RELATED PROTEIN RAB-11A

1z0d[1] C PO4
PHOSPHATE ION[5 atoms] A 85.7
/44.3 7
/7 RAB5C_MOUSE Ras-related protein Rab-5C

2eqb[2] D PO4
PHOSPHATE ION[5 atoms] A 85.7
/39.0 7
/7 SEC4_YEAST Ras-related protein SEC4

2gzh[2] C PO4
PHOSPHATE ION[5 atoms] A 100.0
/42.0 2
/3 RB11A_HUMAN Ras-related protein Rab-11A

3tso[1] J PO4
PHOSPHATE ION[5 atoms] A 33.3
/39.6 3
/3 RAB25_HUMAN Ras-related protein Rab-25

3tso[1] K PO4
PHOSPHATE ION[5 atoms] A 0.0
/39.6 5
/5 RAB25_HUMAN Ras-related protein Rab-25

6ixv[3] I PO4
PHOSPHATE ION[5 atoms] E 75.0
/42.7 8
/8 RB11A_HUMAN Ras-related protein Rab-11A

6zay[2] E PO4
PHOSPHATE ION[5 atoms] A 0.0
/40.6 3
/3 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] F PO4
PHOSPHATE ION[5 atoms] A 40.0
/40.6 5
/5 RB33B_HUMAN Ras-related protein Rab-33B

6zay[1] N PO4
PHOSPHATE ION[5 atoms] C 100.0
/40.6 1
/1 RB33B_HUMAN Ras-related protein Rab-33B

5lef[1] M IPA
ISOPROPYL ALCOHOL[4 atoms] B 50.0
/40.3 6
/6 RAB6A_HUMAN Ras-related protein Rab-6A

1k5g[4] O AF3
ALUMINUM FLUORIDE[4 atoms] A 88.9
/34.0 9
/9 RAN_HUMAN GTP-binding nuclear protein RAN

1n6k[13] D AF3
ALUMINUM FLUORIDE[4 atoms] A 85.7
/43.7 7
/7 RAB5A_HUMAN Ras-related protein Rab-5A

4fmd[1] O AF3
ALUMINUM FLUORIDE[4 atoms] F 100.0
/42.3 6
/6 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[3] U AF3
ALUMINUM FLUORIDE[4 atoms] B 90.0
/40.3 10
/10 RAB1A_HUMAN Ras-related protein Rab-1A

4jvs[1] E AF3
ALUMINUM FLUORIDE[4 atoms] B 77.8
/40.3 9
/9 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[1] V ACT
ACETATE ION[4 atoms] B 33.3
/40.3 3
/3 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[2] W ACT
ACETATE ION[4 atoms] B 50.0
/40.3 4
/4 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[1] BA ACT
ACETATE ION[4 atoms] D 100.0
/40.3 1
/1 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[1] LA ACT
ACETATE ION[4 atoms] D 50.0
/40.3 4
/4 RAB1A_HUMAN Ras-related protein Rab-1A

4iru[1] Z ACT
ACETATE ION[4 atoms] D 100.0
/40.3 1
/1 RAB1A_HUMAN Ras-related protein Rab-1A

5jcz[1] M ACT
ACETATE ION[4 atoms] A 40.0
/42.7 5
/5 RB11A_HUMAN Ras-related protein Rab-11A

6l6o[1] D ACT
ACETATE ION[4 atoms] A 0.0
/40.1 1
/1 A0A109NYM0_LEIDO Rab5a

1n6h[7] D BME
BETA-MERCAPTOETHANOL[4 atoms] A 25.0
/43.7 4
/5 RAB5A_HUMAN Ras-related protein Rab-5A

2bme[1] H BME
BETA-MERCAPTOETHANOL[4 atoms] A 0.0
/39.6 5
/5 RAB4A_HUMAN RAS-RELATED PROTEIN RAB4A

2bme[1] N BME
BETA-MERCAPTOETHANOL[4 atoms] C 100.0
/39.6 3
/3 RAB4A_HUMAN RAS-RELATED PROTEIN RAB4A

3tnf[1] E MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 33.3
/41.9 3
/3 RAB8A_HUMAN Ras-related protein Rab-8A

3tnf[2] F MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 66.7
/41.9 3
/3 RAB8A_HUMAN Ras-related protein Rab-8A

7eq2[2] G MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms] A 66.7
/39.3 6
/6 RAB1A_HUMAN Ras-related protein Rab-1A

7eq2[1] M CAC
CACODYLATE ION[5 atoms] B 100.0
/39.3 2
/2 RAB1A_HUMAN Ras-related protein Rab-1A

7eq2[1] N CAC
CACODYLATE ION[5 atoms] B 33.3
/39.3 3
/3 RAB1A_HUMAN Ras-related protein Rab-1A

4rke[1] D 1PE
PENTAETHYLENE GLYCOL[10 atoms] A 0.0
/38.1 5
/6 O18333_DROME GH01619p

4rke[1] E 1PE
PENTAETHYLENE GLYCOL[7 atoms] A 20.0
/38.1 5
/5 O18333_DROME GH01619p

4rkf[1] E 1PE
PENTAETHYLENE GLYCOL[13 atoms] A 14.3
/35.8 7
/7 RAB3_DROME Ras-related protein Rab-3

4rkf[2] F 1PE
PENTAETHYLENE GLYCOL[10 atoms] A 42.9
/35.8 7
/7 RAB3_DROME Ras-related protein Rab-3

4rkf[1] I 1PE
PENTAETHYLENE GLYCOL[10 atoms] B 0.0
/35.8 10
/10 RAB3_DROME Ras-related protein Rab-3

2e9s[2] D NO3
NITRATE ION[4 atoms] A 71.4
/38.3 7
/7 RAB6B_HUMAN Ras-related protein Rab-6B

4phf[1] D NO3
NITRATE ION[4 atoms] A 66.7
/67.3 6
/6 YPT7_YEAST GTP-binding protein YPT7

5ysu[1] G NO3
NITRATE ION[4 atoms] A 33.3
/34.2 3
/3 RAN_HUMAN GTP-binding nuclear protein Ran

5ysu[1] H NO3
NITRATE ION[4 atoms] A 25.0
/34.2 4
/4 RAN_HUMAN GTP-binding nuclear protein Ran

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
207
	pdb_id	a¹	identity[%]²	description
	1vg8	A	100.0	RAB7_RAT Ras-related protein Rab-7
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

Contact Molecules for Homologous Proteins

Summary Bars[0.0 %]

UniProt Feature Tables [P51149(RAB7A_HUMAN)]