Protein Model on 1z08_C_2_D_1 (TEMPLATE: 1z08 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:5]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) C 2 (C) polymer(polypeptide(L)) [167 aa] Ras-related protein Rab-21 :RAB21_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [166 aa] Ras-related protein Rab-21 :RAB21_HUMAN 79R 80G(D) 112P(K) 113R(M) 114D(L) 115P(G) 116E(N) 117N(E) 173A(M) 174L(I) 175K(E) (identity: 9.1 %/36.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:1z08_C_2 identity=36.4%
queryA         9:LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI: 108
                : **  **   ******   *   **      * ** ****        *   **********  **   **      ** * *    *     *  *   :
1z08_C_2       7:FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--: 104
SecStr          :EEEEEEE TTS HHHHHHHHHHS   SS     S EEEEEEEEETTEEEEEEEEE   GGGGGGT GGGTTT SEEEEEEETT HHHHHHHHHHHHHH--:    
ExpBur          :bbbbbbbbeebbbeebbbbbeeeeeeeeeeeeeeeeeeeeebebeeeebebebebbbbeeebeeebeebbeebebbbbbbbbbeeebbeebeebbeeb--:    
Contact         :                                                                      bb                            

queryA       109:QASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK: 175
                :               *******  * *    *     *        ****     *  *         :
1z08_C_2     105:--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESV-GAKHYHTSAKQNKGIEELFLDLCKRMIE: 169
SecStr          :--HHHHGGGSEEEEEEE GGGGGG  S HHHHHHHHHHT-T EEEE BTTTTBSHHHHHHHHHHHHH :    
ExpBur          :--beeeeeebbbbbbbbeeeeeeebebeeeebeebbeee-ebbbbebbbeeeeebeebbeebbeebbe:    
Contact         :   bbbbbb                                                        bbb                                


Input Residue Numbers for Focused Sites

ex) 2,15,123