Protein Model on 4cym_A_1_D_1 (TEMPLATE: 4cym )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:4]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(RAB7A_HUMAN) A 1 (A) polymer(polypeptide(L)) [177 aa] RAS-RELATED PROTEIN RAB-32 :RAB32_HUMAN
2 b D 1 (D) polymer(polypeptide(L)) [167 aa] ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 :ANR27_HUMAN 8L 43A(V) 44D 45F 46L(A) 47T(L) 60Q 62W 73L(M) 75V(R) 76A(V) 77F(Y) 79R(K) (identity: 38.5 %/37.3 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4cym_A_1 identity=37.3%
queryA         8:LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR-LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF: 106
                :* **   *  ******    **   **  * **** **  *    * * **  * ** ** ***       *  *     ***     **     *    :
4cym_A_1      30:LFKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGLERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDL: 129
SecStr          :EEEEEEE STTSSHHHHHHHHHH    SS     SEEEEEEEEE SSS EEEEEEEEE GGGGGSS HHHHHTT  EEEEEEETT HHHHHTHHHHHHHH:    
ExpBur          :ebbbbbbbbeebbbeebbebbbeeeeeeeeeeeebeeeeebebeeeeebebebebbbbbbebeeeeebeebbeebbbbbbbbbbeeeebbebbeebbebb:    
Contact         :b                                  bbbbb             b b          b bbb b                           

queryA       107:LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA--WCYSKNNIPYFETSAKEAINVEQAFQTIARNAL: 174
                :            * * * ** *  *        *    *        ******  ** * *        *:
4cym_A_1     130:DSKVHLPNGSPIPAVLLANKCD-QNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKIL: 198
SecStr          :HHH B TTS B  EEEEEE TT-S  SS   HHHHHHHHHHTTEEEEEEEBTTTTBSHHHHHHHHHHHHH:    
ExpBur          :eeebebeeeeebbbbbbbbebe-eeeeeebeeeebeebbeeeebebbbebbbeeeeebeebbeebbeebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123