[pdbjlvh2]Protein Model on 1vg9_B_1_J

Protein Model on 1vg9_B_1_J_1 (TEMPLATE: 1vg9 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(RAB7A_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [169 aa]	Ras-related protein Rab-7 :RAB7_RAT
2	b		J 1 (B)	non-polymer(K)	POTASSIUM ION	71Q (identity: 100.0 %/97.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1vg9_B_1 identity=97.1%

queryA         6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
                :******************************     *****************************************************************:
1vg9_B_1       6:KVLLKVIILGDSGVGKTSLMNQYVNKKFSNXXXXXIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE: 105
SecStr          :  EEEEEEE  TTSSHHHHHHHHHH     -----    EEEEEEEETTEEEEEEEE  TTTTTTT   HHHHTT SEEEEEEETT HHHHHTHHHHHHH:    
ExpBur          :ebebbbbbbbbeebbbeebbebbbeeeeee-----eeeeeeeeebebeeeebbbebebbeeebeeeebeeebbeebbbbbbbbbbeeeebbebbeebbee:    
Contact         :                                                                 b                                  

queryA       106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
                :**************************************************************************:
1vg9_B_1     106:FLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE: 179
SecStr          :HHHHH  SSGGG  EEEEEE TTSS   S HHHHHHHHHHTTS  EEE BTTTTBSHHHHHHHHHHHHHHHHH :    
ExpBur          :beeebebeeeeebbbbbbbbeeeeeeeebeeeebeebbeeeeebebbbbbbeeeeebeebbebbbebbbebeee:

Protein Model on 1vg9_B_1_J_1 (TEMPLATE: 1vg9 )

Input Residue Numbers for Focused Sites