Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
19598 | 4382 | 141 | P0C6U8(R1A_SARS) | RecName: Full=Replicase polyprotein 1a; Short=pp1a;AltName: Full=ORF1a polyprotein;Contains: RecName: Full=Host translation inhibitor nsp1; AltName: Full=Leader protein; AltName: Full=Non-structural protein 1; Short=nsp1;Contains: RecName: Full=Non-structural protein 2; Short=nsp2; AltName: Full=p65 homolog;Contains: RecName: Full=Papain-like protease nsp3; Short=PL-PRO; EC=3.4.19.12 ; EC=3.4.22.- ; AltName: Full=Non-structural protein 3; Short=nsp3; AltName: Full=PL2-PRO;Contains: RecName: Full=Non-structural protein 4; Short=nsp4;Contains: RecName: Full=3C-like proteinase nsp5; Short=3CL-PRO; Short=3CLp; EC=3.4.22.69 ; AltName: Full=Main protease; Short=Mpro; AltName: Full=Non-structural protein 5; Short=nsp5; AltName: Full=SARS coronavirus main proteinase;Contains: RecName: Full=Non-structural protein 6; Short=nsp6;Contains: RecName: Full=Non-structural protein 7; Short=nsp7;Contains: RecName: Full=Non-structural protein 8; Short=nsp8;Contains: RecName: Full=RNA-capping enzyme subunit nsp9; AltName: Full=Non-structural protein 9; Short=nsp9; EC=2.7.7.50;Contains: RecName: Full=Non-structural protein 10; Short=nsp10; AltName: Full=Growth factor-like peptide; Short=GFL;Contains: RecName: Full=Non-structural protein 11; Short=nsp11; |
QUERYSEQ |
MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRNVLLRKNGNKGAGGHSYGIDLKSYDLGDELG TDPIEDYEQNWNTKHGSGALRELTRELNGGAVTRYVDNNFCGPDGYPLDCIKDFLARAGKSMCTLSEQLDYIESKRGVYCCRDHEHEIAWFTERSDKSYEHQTPFEIKSAKKFDTFKGECPKFVFPLNSKVKVIQPRVEKKKTEGFMGRI RSVYPVASPQECNNMHLSTLMKCNHCDEVSWQTCDFLKATCEHCGTENLVIEGPTTCGYLPTNAVVKMPCPACQDPEIGPEHSVADYHNHSNIETRLRKGGRTRCFGGCVFAYVGCYNKRAYWVPRASADIGSGHTGITGDNVETLNEDL LEILSRERVNINIVGDFHLNEEVAIILASFSASTSAFIDTIKSLDYKSFKTIVESCGNYKVTKGKPVKGAWNIGQQRSVLTPLCGFPSQAAGVIRSIFARTLDAANHSIPDLQRAAVTILDGISEQSLRLVDAMVYTSDLLTNSVIIMAY VTGGLVQQTSQWLSNLLGTTVEKLRPIFEWIEAKLSAGVEFLKDAWEILKFLITGVFDIVKGQIQVASDNIKDCVKCFIDVVNKALEMCIDQVTIAGAKLRSLNLGEVFIAQSKGLYRQCIRGKEQLQLLMPLKAPKEVTFLEGDSHDTV LTSEEVVLKNGELEALETPVDSFTNGAIVGTPVCVNGLMLLEIKDKEQYCALSPGLLATNNVFRLKGGAPIKGVTFGEDTVWEVQGYKNVRITFELDERVDKVLNEKCSVYTVESGTEVTEFACVVAEAVVKTLQPVSDLLTNMGIDLDE WSVATFYLFDDAGEENFSSRMYCSFYPPDEEEEDDAECEEEEIDETCEHEYGTEDDYQGLPLEFGASAETVRVEEEEEEDWLDDTTEQSEIEPEPEPTPEEPVNQFTGYLKLTDNVAIKCVDIVKEAQSANPMVIVNAANIHLKHGGGVA GALNKATNGAMQKESDDYIKLNGPLTVGGSCLLSGHNLAKKCLHVVGPNLNAGEDIQLLKAAYENFNSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRTQVYIAVNDKALYEQVVMDYLDNLKPRVEAPKQEEPPNTEDSKTEEKSVVQK PVDVKPKIKACIDEVTTTLEETKFLTNKLLLFADINGKLYHDSQNMLRGEDMSFLEKDAPYMVGDVITSGDITCVVIPSKKAGGTTEMLSRALKKVPVDEYITTYPGQGCAGYTLEEAKTALKKCKSAFYVLPSEAPNAKEEILGTVSWN LREMLAHAEETRKLMPICMDVRAIMATIQRKYKGIKIQEGIVDYGVRFFFYTSKEPVASIITKLNSLNEPLVTMPIGYVTHGFNLEEAARCMRSLKAPAVVSVSSPDAVTTYNGYLTSSSKTSEEHFVETVSLAGSYRDWSYSGQRTELG VEFLKRGDKIVYHTLESPVEFHLDGEVLSLDKLKSLLSLREVKTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLTSIKWADNN CYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGVEAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLC ANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTDVFYKETSYTTTIKPVSYKLDGVTYTEIEPKLDGYYKKDNAYYTEQPIDLVPTQPLPNASFDNFKLTCSNTKFADDLNQMTGFTKPASRELSVTFFPDLNGDVVAIDYR HYSASFKKGAKLLHKPIVWHINQATTKTTFKPNTWCLRCLWSTKPVDTSNSFEVLAVEDTQGMDNLACESQQPTSEEVVENPTIQKEVIECDVKTTEVVGNVILKPSDEGVKVTQELGHEDLMAAYVENTSITIKKPNELSLALGLKTIA THGIAAINSVPWSKILAYVKPFLGQAAITTSNCAKRLAQRVFNNYMPYVFTLLFQLCTFTKSTNSRIRASLPTTIAKNSVKSVAKLCLDAGINYVKSPKFSKLFTIAMWLLLLSICLGSLICVTAAFGVLLSNFGAPSYCNGVRELYLNS SNVTTMDFCEGSFPCSICLSGLDSLDSYPALETIQVTISSYKLDLTILGLAAEWVLAYMLFTKFFYLLGLSAIMQVFFGYFASHFISNSWLMWFIISIVQMAPVSAMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVEC TTIVNGMKRSFYVYANGGRGFCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLYFDKAGQKTYERHPLSHFVNLDNLRANNTKGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLD QALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKALVATAHSELAKGVALDGVLSTFVSAARQGVVDTDVDTKDVIECLKLSHHSDLEVTGDSCNNFMLTYNKVENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSE QLRKQIRSAAKKNNIPFRLTCATTRQVVNVITTKISLKGGKIVSTCFKLMLKATLLCVLAALVCYIVMPVHTLSIHDGYTNEIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQRGGSYKNDKSCPVVAAIITREIGFIVPGLPGTV LRAINGDFLHFLPRVFSAVGNICYTPSKLIEYSDFATSACVLAAECTIFKDAMGKPVPYCYDTNLLEGSISYSELRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVLNNEHYRALSGVFCGVDA MNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWITAIYVFCISLKHCHWFFNNYLRKRVMFNGVTFS TFEEAALCTFLLNKEMYLKLRSETLLPLTQYNRYLALYNKYKYFSGALDTTSYREAACCHLAKALNDFSNSGADVLYQPPQTSITSAVLQSGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIR KSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYA AVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQGKFKKIVKGTHHWMLLTFLTSLLILVQSTQWSLFFFVYENAFLPFTLGIMAIAA CAMLLVKHKHAFLCLFLLPSLATVAYFNMVYMPASWVMRIMTWLELADTSLSGYRLKDCVMYASALVLLILMTARTVYDDAARRVWTLMNVITLVYKVYYGNALDQAISMWALVISVTSNYSGVVTTIMFLARAIVFVCVEYYPLLFITG NTLQCIMLVYCFLGYCCCCYFGLFCLLNRYFRLTLGVYDYLVSTQEFRYMNSQGLLPPKSSIDAFKLNIKLLGIGGKPCIKVATVQSKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQG AVDINRLCEEMLDNRATLQAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVV VPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQNNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGP KVKYLYFIKGLNNLNRGMVLGSLAATVRLQAGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC GMWKGYGCSCDQLREPLMQSADASTFLNGFAV |
4382 | region | name | description |
1-4382 | CHAIN | /note="Replicase polyprotein 1a" /id="PRO_0000338254" | |
1-180 | CHAIN | /note="Host translation inhibitor nsp1" /id="PRO_0000338255" | |
181-818 | CHAIN | /note="Non-structural protein 2" /id="PRO_0000338256" | |
819-2740 | CHAIN | /note="Papain-like protease nsp3" /id="PRO_0000338257" | |
2741-3240 | CHAIN | /note="Non-structural protein 4" /id="PRO_0000338258" | |
3241-3546 | CHAIN | /note="3C-like proteinase nsp5" /id="PRO_0000338259" | |
3547-3836 | CHAIN | /note="Non-structural protein 6" /id="PRO_0000338260" | |
3837-3919 | CHAIN | /note="Non-structural protein 7" /id="PRO_0000338261" | |
3920-4117 | CHAIN | /note="Non-structural protein 8" /id="PRO_0000338262" | |
4118-4230 | CHAIN | /note="RNA-capping enzyme subunit nsp9" /id="PRO_0000338263" | |
4231-4369 | CHAIN | /note="Non-structural protein 10" /id="PRO_0000338264" | |
4370-4382 | CHAIN | /note="Non-structural protein 11" /id="PRO_0000338265" | |
1-2202 | TOPO_DOM | /note="Cytoplasmic" | |
2203-2223 | TRANSMEM | /note="Helical" | |
2224-2303 | TOPO_DOM | /note="Lumenal" | |
2304-2324 | TRANSMEM | /note="Helical" | |
2325-2754 | TOPO_DOM | /note="Cytoplasmic" | |
2755-2775 | TRANSMEM | /note="Helical" | |
2776-3021 | TOPO_DOM | /note="Lumenal" | |
3022-3042 | TRANSMEM | /note="Helical" | |
3043-3076 | TOPO_DOM | /note="Cytoplasmic" | |
3077-3097 | TRANSMEM | /note="Helical" | |
3098-3104 | TOPO_DOM | /note="Lumenal" | |
3105-3125 | TRANSMEM | /note="Helical" | |
3126-3563 | TOPO_DOM | /note="Cytoplasmic" | |
3564-3584 | TRANSMEM | /note="Helical" | |
3585-3585 | TOPO_DOM | /note="Lumenal" | |
3586-3606 | TRANSMEM | /note="Helical" | |
3607-3611 | TOPO_DOM | /note="Cytoplasmic" | |
3612-3632 | TRANSMEM | /note="Helical" | |
3633-3657 | TOPO_DOM | /note="Lumenal" | |
3658-3678 | TRANSMEM | /note="Helical" | |
3679-3727 | TOPO_DOM | /note="Cytoplasmic" | |
3728-3748 | TRANSMEM | /note="Helical" | |
3749-3755 | TOPO_DOM | /note="Lumenal" | |
3756-3776 | TRANSMEM | /note="Helical" | |
3777-4382 | TOPO_DOM | /note="Cytoplasmic" | |
12-127 | DOMAIN | /note="CoV Nsp1 globular" | |
148-179 | DOMAIN | /note="BetaCoV Nsp1 C-terminal" | |
183-456 | DOMAIN | /note="CoV Nsp2 N-terminal" | |
458-688 | DOMAIN | /note="CoV Nsp2 middle" | |
690-818 | DOMAIN | /note="CoV Nsp2 C-terminal" | |
822-930 | DOMAIN | /note="Ubiquitin-like 1" | |
1003-1169 | DOMAIN | /note="Macro 1" | |
1207-1335 | DOMAIN | /note="Macro 2" | |
1343-1470 | DOMAIN | /note="Macro 3" | |
1472-1538 | DOMAIN | /note="DPUP" | |
1542-1597 | DOMAIN | /note="Ubiquitin-like 2" | |
1611-1875 | DOMAIN | /note="Peptidase C16" | |
1888-1998 | DOMAIN | /note="Nucleic acid-binding" | |
2023-2132 | DOMAIN | /note="G2M" | |
2224-2294 | DOMAIN | /note="3Ecto" | |
2372-2740 | DOMAIN | /note="CoV Nsp3 Y" | |
3142-3240 | DOMAIN | /note="Nsp4C" | |
3241-3546 | DOMAIN | /note="Peptidase C30" | |
3837-3919 | DOMAIN | /note="RdRp Nsp7 cofactor" | |
3920-4117 | DOMAIN | /note="RdRp Nsp8 cofactor" | |
4118-4230 | DOMAIN | /note="Nsp9 ssRNA-binding" | |
4231-4369 | DOMAIN | /note="ExoN/MTase coactivator" | |
1729-1766 | ZN_FING | /note="C4-type" ECO:0000269|PubMed:16306590" | |
4304-4320 | ZN_FING | ||
4347-4360 | ZN_FING | ||
200-236 | REGION | /note="C2H2" | |
323-344 | REGION | /note="C4" | |
370-416 | REGION | /note="C2HC" | |
972-1003 | REGION | /note="Disordered" | |
1175-1198 | REGION | /note="Disordered" | |
2203-2324 | REGION | /note="HD1" | |
2372-2462 | REGION | /note="Y1" | |
2376-2389 | REGION | /note="ZF1" | |
2422-2432 | REGION | /note="ZF2" | |
2463-2740 | REGION | /note="CoV-Y" | |
2463-2557 | REGION | /note="Y2" | |
2558-2639 | REGION | /note="Y3" | |
2640-2740 | REGION | /note="Y4" | |
2755-3125 | REGION | /note="HD2" | |
3564-3776 | REGION | /note="HD3" | |
972-997 | COMPBIAS | /note="Acidic residues" | |
1651-1651 | ACT_SITE | /note="For PL-PRO activity" | |
1812-1812 | ACT_SITE | /note="For PL-PRO activity" ECO:0000269|PubMed:16306590" | |
1826-1826 | ACT_SITE | /note="For PL-PRO activity" ECO:0000269|PubMed:16306590" | |
3281-3281 | ACT_SITE | /note="For 3CL-PRO activity" ECO:0000269|PubMed:16306590" | |
3385-3385 | ACT_SITE | /note="For 3CL-PRO activity" | |
200-200 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" | |
231-231 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" | |
234-234 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" | |
236-236 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" | |
323-323 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" | |
326-326 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" | |
341-341 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" | |
344-344 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" | |
370-370 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3" | |
373-373 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3" | |
382-382 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3" | |
416-416 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="3" | |
1729-1729 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4" | |
1732-1732 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4" | |
1764-1764 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4" | |
1766-1766 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="4" | |
2376-2376 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5" | |
2381-2381 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5" | |
2386-2386 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5" | |
2389-2389 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="5" | |
2422-2422 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6" | |
2425-2425 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6" | |
2429-2429 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6" | |
2432-2432 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="6" | |
4304-4304 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" | |
4307-4307 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" | |
4313-4313 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" | |
4320-4320 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="7" | |
4347-4347 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" | |
4350-4350 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" | |
4358-4358 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" | |
4360-4360 | BINDING | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="8" | |
1-4382 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
4382 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
7fac | A | 100.0 | R1A_SARS Non-structural protein 2 | ||||
4mm3 | B | 100.0 | R1A_CVHSA Papain-like proteinase | ||||
2z3d | A | 100.0 | R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
4382 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1uk4[2] | C | 5-mer peptide of inhibitor[6 aa] | A | 100.0 /100.0 |
18 /18 |
R1AB_SARS 3C-like proteinase nsp5 | |
1uk4[1] | E | 5-mer peptide of inhibitor[5 aa] | B | 100.0 /100.0 |
2 /2 |
R1AB_SARS 3C-like proteinase nsp5 | |
2amq[2] | C | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. | A | 100.0 /100.0 |
24 /24 |
R1AB_CVHSA 3C-like proteinase | |
2hob[10] | B | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. | A | 100.0 /100.0 |
23 /23 |
R1AB_CVHSA Replicase polyprotein 1ab | |
3iwm[4] | H | N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-.. | C | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
2z3c[4] | B | inhibitor[5 aa] | A | 100.0 /100.0 |
19 /19 |
R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) | |
2z3d[2] | B | Inhibitor[5 aa] | A | 100.0 /100.0 |
18 /18 |
R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) | |
3sna[2] | B | Peptide aldehyde inhibitor Ac-NSFSQ-H[6 aa] | A | 100.0 /100.0 |
17 /17 |
R1A_CVHSA 3C-like proteinase | |
3snb[2] | B | Peptide aldehyde inhibitor Ac-DSFDQ-H[6 aa] | A | 100.0 /100.0 |
19 /19 |
R1A_CVHSA 3C-like proteinase | |
3snc[2] | B | Peptide aldehyde inhibitor Ac-NSTSQ-H[6 aa] | A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA 3C-like proteinase | |
3snd[2] | C | Peptide aldehyde inhibitor Ac-ESTLQ-H[2 aa] | A | 100.0 /100.0 |
12 /12 |
R1A_CVHSA 3C-like proteinase | |
3sne[2] | B | Peptide aldehyde inhibitor Ac-ESTLQ-H[6 aa] | A | 100.0 /100.0 |
21 /21 |
R1A_CVHSA 3C-like proteinase | |
3vb4[4] | C | B4Z inhibitor[5 aa] | A | 100.0 /100.0 |
21 /21 |
R1A_CVHSA 3C-like proteinase | |
3vb4[1] | C | B4Z inhibitor[5 aa] | B | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
3vb6[2] | C | C6Z inhibitor[4 aa] | A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA 3C-like proteinase | |
3vb6[1] | D | C6Z inhibitor[4 aa] | A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
3vb7[2] | C | M4Z inhibitor[4 aa] | A | 100.0 /100.0 |
20 /20 |
R1A_CVHSA 3C-like proteinase | |
3vb7[1] | C | M4Z inhibitor[4 aa] | B | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
4mm3[2] | A | UBC_HUMAN Ubiquitin[76 aa] | B | 100.0 /100.0 |
25 /25 |
R1A_CVHSA Papain-like proteinase | |
5e6j[1] | F | UBB_HUMAN Polyubiquitin-B[75 aa] | D | 100.0 /100.0 |
10 /10 |
R1AB_CVHSA Replicase polyprotein 1ab | |
5tl6[2] | D | ISG15_HUMAN Ubiquitin-like protein ISG15[78 aa] | A | 100.0 /100.0 |
21 /21 |
R1AB_CVHSA Replicase polyprotein 1ab | |
5tl7[2] | A | ISG15_MOUSE Ubiquitin-like protein ISG15[77 aa] | B | 100.0 /100.0 |
27 /27 |
R1AB_CVHSA Replicase polyprotein 1ab | |
7lfu[3] | B | Papain-like protease peptide inhibitor VIR250[5 aa.. | A | 100.0 /100.0 |
16 /16 |
R1A_SARS papain-like protease | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
4382 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1wof[2] | C |
I12
N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VAL.. |
A | 100.0 /100.0 |
23 /23 |
R1AB_CVHSA 3C-like proteinase | |
2a5i[6] | B |
AZP
(5S,8S,14R)-ETHYL 11-(3-AMINO-3-OXOPROPYL)-8-BENZY.. |
A | 100.0 /100.0 |
23 /23 |
R1AB_CVHSA 3C-like peptidase | |
2alv[2] | B |
CY6
N-((3S,6R)-6-((S,E)-4-ETHOXYCARBONYL-1-((S)-2-OXOP.. |
A | 100.0 /100.0 |
24 /24 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2amd[2] | C |
9IN
N-(3-FUROYL)-D-VALYL-L-VALYL-N~1~-((1R,2Z)-4-ETHOX.. |
A | 100.0 /100.0 |
23 /23 |
R1AB_CVHSA 3C-like proteinase | |
2d2d[2] | C |
ENB
ETHYL (2E,4S)-4-[((2R)-2-{[N-(TERT-BUTOXYCARBONYL).. |
A | 100.0 /100.0 |
21 /21 |
R1AB_CVHSA 3C-like proteinase | |
2gx4[2] | B |
NOL
N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-.. |
A | 100.0 /100.0 |
22 /22 |
R1AB_CVHSA 3C-like proteinase | |
2gx4[2] | B |
NOL
N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-.. |
A | 100.0 /100.0 |
1 /1 |
R1AB_CVHSA 3C-like proteinase | |
2gz7[2] | B |
D3F
2-[(2,4-DICHLORO-5-METHYLPHENYL)SULFONYL]-1,3-DINI.. |
A | 100.0 /100.0 |
13 /13 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2gz8[2] | B |
F3F
S-[5-(TRIFLUOROMETHYL)-4H-1,2,4-TRIAZOL-3-YL] 5-(P.. |
A | 100.0 /100.0 |
14 /14 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2op9[2] | C |
WR1
NALPHA-[(BENZYLOXY)CARBONYL]-N-[(1R)-4-HYDROXY-1-M.. |
A | 100.0 /100.0 |
13 /13 |
R1AB_CVHSA Replicase polyprotein 1ab (pp1ab, ORF1AB) 3C-like .. | |
2v6n[2] | B |
XP1
4-(DIMETHYLAMINO)BENZOIC ACID[11 atoms] |
A | 100.0 /100.0 |
10 /10 |
R1AB_CVHSA REPLICASE POLYPROTEIN 1AB | |
2vj1[1] | G |
XP1
4-(DIMETHYLAMINO)BENZOIC ACID[8 atoms] |
B | 100.0 /100.0 |
6 /6 |
A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE | |
2vj1[1] | D |
BEZ
BENZOIC ACID[9 atoms] |
A | 100.0 /100.0 |
8 /8 |
A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE | |
2z94[2] | C |
TLD
4-methylbenzene-1,2-dithiol[9 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2zu4[2] | B |
ZU3
N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl).. |
A | 100.0 /100.0 |
22 /22 |
R1A_CVHSA 3C-like proteinase | |
2zu4[2] | B |
ZU3
N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl).. |
A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
2zu5[2] | B |
ZU5
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-.. |
A | 100.0 /100.0 |
22 /22 |
R1A_CVHSA 3C-like proteinase | |
2zu5[2] | B |
ZU5
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-.. |
A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
3d62[2] | B |
959
benzyl (2-oxopropyl)carbamate[15 atoms] |
A | 100.0 /100.0 |
10 /10 |
R1AB_CVHSA 3C-like proteinase | |
3e9s[1] | B |
TTT
5-amino-2-methyl-N-[(1R)-1-naphthalen-1-ylethyl]be.. |
A | 100.0 /100.0 |
10 /10 |
R1A_CVHSA Non-structural protein 3 | |
3mj5[1] | C |
GRM
N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthale.. |
A | 100.0 /100.0 |
9 /9 |
R1A_CVHSA Replicase polyprotein 1a | |
3mj5[1] | E |
GRM
N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthale.. |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA Replicase polyprotein 1a | |
3sn8[2] | B |
S89
N-[(2S)-1-hydroxy-3-phenylpropan-2-yl]-Nalpha-[(2E.. |
A | 100.0 /100.0 |
15 /15 |
R1A_CVHSA 3C-like proteinase | |
3szn[2] | B |
G75
ETHYL (4R)-4-({N-[(BENZYLOXY)CARBONYL]-L-PHENYLALA.. |
A | 100.0 /100.0 |
17 /17 |
R1A_CVHSA 3C-like proteinase | |
3tit[2] | B |
G81
ETHYL (4R)-4-{[N-(TERT-BUTOXYCARBONYL)-L-PHENYLALA.. |
A | 100.0 /100.0 |
15 /15 |
R1A_CVHSA SARS coronavirus main protease | |
3tiu[2] | C |
G82
ETHYL (5S,8S,11R)-8-BENZYL-5-(3-TERT-BUTOXY-3-OXOP.. |
A | 100.0 /100.0 |
23 /23 |
R1A_CVHSA SARS coronavirus main protease | |
3tns[2] | B |
G83
ETHYL (5S,8S,11R)-8-BENZYL-5-(2-TERT-BUTOXY-2-OXOE.. |
A | 100.0 /100.0 |
24 /24 |
R1A_CVHSA SARS coronavirus main protease | |
3tns[2] | B |
G83
ETHYL (5S,8S,11R)-8-BENZYL-5-(2-TERT-BUTOXY-2-OXOE.. |
A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA SARS coronavirus main protease | |
3tnt[2] | B |
G85
N-[(benzyloxy)carbonyl]-O-tert-butyl-L-seryl-N-{(2.. |
A | 100.0 /100.0 |
22 /22 |
R1A_CVHSA SARS coronavirus main protease | |
3v3m[2] | B |
0EN
N-[(1R)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl).. |
A | 100.0 /100.0 |
15 /15 |
R1A_CVHSA 3C-like proteinase | |
4mds[2] | B |
23H
N-[4-(acetylamino)phenyl]-2-(1H-benzotriazol-1-yl).. |
A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA 3C-like proteinase | |
4ovz[1] | D |
P85
N-[(4-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-.. |
A | 100.0 /100.0 |
11 /11 |
R1A_CVHSA Papain-like proteinase | |
4ow0[1] | D |
S88
N-[(3-fluorophenyl)methyl]-1-[(1R)-1-naphthalen-1-.. |
A | 100.0 /100.0 |
10 /10 |
R1A_CVHSA papain-like protease | |
5n19[2] | B |
D03
(S)-N-benzyl-3-((S)-2-cinnamamido-3-phenylpropanam.. |
A | 100.0 /100.0 |
21 /21 |
R1AB_CVHSA SARS coronavirus main protease | |
5n5o[2] | B |
8O5
(2~{R},3~{S})-3-[[(2~{S})-3-cyclopropyl-2-[[(~{E}).. |
A | 100.0 /100.0 |
17 /17 |
R1AB_CVHSA Replicase polyprotein 1ab | |
6lnq[1] | B |
EJF
N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene.. |
A | 100.0 /100.0 |
19 /19 |
Severe Acute Respiratory Syndrome Coronavirus 3c L.. | |
6lny[1] | B |
EOC
(2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[.. |
A | 100.0 /100.0 |
16 /16 |
R1A_CVHSA Replicase polyprotein 1a | |
6lo0[1] | B |
EOF
(2~{S})-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[.. |
A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA Replicase polyprotein 1a | |
6w79[2] | C |
X77
N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino).. |
A | 100.0 /100.0 |
17 /17 |
Main protease | |
6wco[2] | D |
X47
N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclopentylamino.. |
A | 100.0 /100.0 |
17 /17 |
A0A3G5BIY8_CVHSA Main protease | |
6xhl[2] | C |
V2M
N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyr.. |
A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA 3C-like proteinase | |
6xhn[2] | C |
V3D
(3S)-3-{[N-(4-methoxy-1H-indole-2-carbonyl)-L-leuc.. |
A | 100.0 /100.0 |
17 /17 |
R1A_CVHSA 3C-like proteinase | |
6xho[1] | D |
V34
ethyl (2E,4S)-4-{[N-(4-methoxy-1H-indole-2-carbony.. |
A | 100.0 /100.0 |
19 /19 |
R1A_CVHSA 3C-like proteinase | |
6y7m[2] | B |
OEW
~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclohexyl-1-[[(2.. |
A | 100.0 /100.0 |
20 /20 |
R1A_SARS 3C-like proteinase | |
7end[2] | B |
J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. |
A | 100.0 /100.0 |
17 /17 |
R1A_CVHSA Replicase polyprotein 1a | |
7end[2] | B |
J7R
~{N}-[(1~{S},2~{R})-2-[[4-bromanyl-2-(methylcarbam.. |
A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA Replicase polyprotein 1a | |
7eo8[1] | C |
FNO
2-[(1R)-4-methyl-1-oxidanyl-pent-3-enyl]-5,8-bis(o.. |
A | 100.0 /100.0 |
8 /8 |
R1A_CVHSA 3C-like proteinase | |
7k0h[2] | E |
VR4
N-{(2S,3R)-4-(benzylamino)-3-hydroxy-4-oxo-1-[(3S).. |
A | 100.0 /100.0 |
18 /18 |
R1A_CVHSA Replicase polyprotein 1a | |
7lcp[4] | B |
UED
N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3.. |
A | 100.0 /100.0 |
14 /14 |
R1AB_SARS 3C-like proteinase | |
7lmg[2] | C |
Y6G
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-imidazol-4-yl.. |
A | 100.0 /100.0 |
17 /17 |
R1A_SARS 3C-like proteinase | |
7lmh[2] | B |
Y6D
2-(benzotriazol-1-yl)-~{N}-(4-pyridin-3-ylphenyl)-.. |
A | 100.0 /100.0 |
19 /19 |
R1A_SARS 3C-like proteinase | |
7lmi[2] | C |
Y6A
2-(benzotriazol-1-yl)-~{N}-[4-(1~{H}-pyrazol-4-yl).. |
A | 100.0 /100.0 |
16 /16 |
R1A_SARS 3C-like proteinase | |
7lmj[2] | E |
Y67
2-(benzotriazol-1-yl)-~{N}-[(3-chlorophenyl)methyl.. |
A | 100.0 /100.0 |
18 /18 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | B |
4IO
5-chloropyridin-3-yl 1-(3-nitrobenzene-1-sulfonyl).. |
A | 100.0 /100.0 |
14 /14 |
R1A_SARS 3C-like proteinase | |
7vlo[2] | C |
4WI
(1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrroli.. |
A | 100.0 /100.0 |
22 /22 |
R1A_SARS 3C-like proteinase | |
7wqi[2] | C |
80I
[(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-y.. |
A | 100.0 /100.0 |
14 /14 |
R1A_SARS 3C-like proteinase | |
7xax[1] | C |
3WL
5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one[20 atom.. |
A | 100.0 /100.0 |
14 /14 |
R1A_SARS 3C-like proteinase nsp5 | |
7ygq[2] | C |
HUR
N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxida.. |
A | 100.0 /100.0 |
20 /20 |
R1A_SARS 3C-like proteinase nsp5 | |
7zqw[2] | B |
XNV
ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-.. |
A | 100.0 /100.0 |
19 /19 |
R1A_SARS 3C-like proteinase nsp5 | |
8hus[2] | C |
7YY
6-[(6-chloranyl-2-methyl-indazol-5-yl)amino]-3-[(1.. |
A | 100.0 /100.0 |
18 /18 |
R1A_SARS 3C-like proteinase nsp5 | |
8uld[2] | B |
WYR
N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-.. |
A | 100.0 /100.0 |
19 /19 |
R1A_SARS Replicase polyprotein 1a | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
4382 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2a5a[2] | B |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1AB_CVHSA 3C-like peptidase | |
3e9s[1] | D |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_CVHSA Non-structural protein 3 | |
3e9s[1] | E |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA Non-structural protein 3 | |
7k0h[1] | C |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_CVHSA Replicase polyprotein 1a | |
7k0h[1] | D |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA Replicase polyprotein 1a | |
7lfv[1] | FA |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1A_SARS papain-like protease | |
2fe8[14] | D |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2z94[2] | B |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1AB_CVHSA Replicase polyprotein 1ab | |
3e9s[1] | C |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA Non-structural protein 3 | |
5tl6[4] | E |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab | |
7fac[1] | B |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS Non-structural protein 2 | |
7fac[1] | C |
ZN
ZINC ION[1 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1A_SARS Non-structural protein 2 | |
2fe8[6] | E |
BR
BROMIDE ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2fe8[6] | F |
BR
BROMIDE ION[1 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2fe8[6] | G |
BR
BROMIDE ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2z9g[2] | B |
HG
MERCURY (II) ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA 3C-like proteinase | |
5y3e[2] | C |
NA
SODIUM ION[1 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[2] | D |
NA
SODIUM ION[1 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[2] | E |
NA
SODIUM ION[1 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[2] | F |
NA
SODIUM ION[1 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[2] | G |
NA
SODIUM ION[1 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1A_CVHSA Replicase polyprotein 1a | |
7lcp[2] | D |
CA
CALCIUM ION[1 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS 3C-like proteinase | |
7lcp[2] | E |
CA
CALCIUM ION[1 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS 3C-like proteinase | |
7lfv[1] | DA |
NH4
AMMONIUM ION[1 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1A_SARS papain-like protease | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
4382 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1uj1[164] | B | R1AB_CVHSA 3C-like proteinase[302 aa] | A | 100.0 /100.0 |
29 /29 |
R1AB_CVHSA 3C-like proteinase | |
2gtb[2] | A | R1AB_CVHSA 3C-like proteinase[299 aa] | A | 100.0 /100.0 |
2 /2 |
R1AB_CVHSA 3C-like proteinase | |
2z3e[2] | A | R1AB_CVHSA Replicase polyprotein 1ab (pp1ab)[306 aa] | A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) | |
3iwm[4] | A | R1A_CVHSA 3C-like proteinase[301 aa] | A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA 3C-like proteinase | |
3iwm[8] | B | R1A_CVHSA 3C-like proteinase[301 aa] | A | 100.0 /100.0 |
1 /1 |
R1A_CVHSA 3C-like proteinase | |
3iwm[8] | C | R1A_CVHSA 3C-like proteinase[300 aa] | A | 100.0 /100.0 |
72 /72 |
R1A_CVHSA 3C-like proteinase | |
3iwm[8] | D | R1A_CVHSA 3C-like proteinase[300 aa] | A | 100.0 /100.0 |
3 /3 |
R1A_CVHSA 3C-like proteinase | |
3iwm[8] | D | R1A_CVHSA 3C-like proteinase[300 aa] | A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA 3C-like proteinase | |
8uld[2] | A | R1A_SARS Replicase polyprotein 1a[305 aa] | A | 100.0 /100.0 |
31 /31 |
R1A_SARS Replicase polyprotein 1a | |
2fe8[6] | B | R1AB_CVHSA Replicase polyprotein 1ab[314 aa] | A | 100.0 /100.0 |
23 /23 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2fe8[6] | B | R1AB_CVHSA Replicase polyprotein 1ab[314 aa] | A | 100.0 /100.0 |
8 /9 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2fe8[7] | C | R1AB_CVHSA Replicase polyprotein 1ab[313 aa] | A | 100.0 /100.0 |
18 /18 |
R1AB_CVHSA Replicase polyprotein 1ab | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
4382 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2a5a[15] | D |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA 3C-like peptidase | |
3vb3[1] | D |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA 3C-like proteinase | |
3vb3[5] | E |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA 3C-like proteinase | |
3vb3[1] | F |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA 3C-like proteinase | |
3vb3[3] | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA 3C-like proteinase | |
3vb3[3] | H |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA 3C-like proteinase | |
3vb3[1] | I |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1A_CVHSA 3C-like proteinase | |
3vb4[1] | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_CVHSA 3C-like proteinase | |
3vb4[2] | J |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_CVHSA 3C-like proteinase | |
3vb4[3] | I |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1A_CVHSA 3C-like proteinase | |
3vb4[1] | L |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
5 /5 |
R1A_CVHSA 3C-like proteinase | |
3vb7[1] | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
5 /5 |
R1A_CVHSA 3C-like proteinase | |
7lcp[4] | C |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1AB_SARS 3C-like proteinase | |
7lcq[2] | B |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS 3C-like proteinase | |
7lcq[2] | C |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1AB_SARS 3C-like proteinase | |
7lfv[1] | F |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[1] | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS papain-like protease | |
7lfv[1] | H |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[5] | I |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS papain-like protease | |
7lfv[1] | J |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[1] | K |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[1] | L |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS papain-like protease | |
7lfv[1] | M |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_SARS papain-like protease | |
7lfv[1] | N |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[2] | O |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[2] | Q |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_SARS papain-like protease | |
7lfv[1] | BA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
7lfv[1] | T |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1A_SARS papain-like protease | |
7lfv[1] | V |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1A_SARS papain-like protease | |
7lfv[1] | X |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1A_SARS papain-like protease | |
7lfv[2] | Y |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1A_SARS papain-like protease | |
8uld[2] | C |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS Replicase polyprotein 1a | |
2a5i[14] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA 3C-like peptidase | |
2z3e[2] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab (pp1ab) | |
3vb4[1] | K |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1A_CVHSA 3C-like proteinase | |
3vb7[1] | H |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1A_CVHSA 3C-like proteinase | |
4ow0[1] | F |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_CVHSA papain-like protease | |
5y3e[2] | H |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[2] | I |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA Replicase polyprotein 1a | |
5y3e[1] | J |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA Replicase polyprotein 1a | |
7lmg[8] | B |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
8 /8 |
R1A_SARS 3C-like proteinase | |
7lmg[4] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1A_SARS 3C-like proteinase | |
7lmh[6] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_SARS 3C-like proteinase | |
2fe8[7] | H |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA Replicase polyprotein 1ab | |
2v6n[2] | D |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1AB_CVHSA REPLICASE POLYPROTEIN 1AB | |
5tl6[1] | F |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_CVHSA Replicase polyprotein 1ab | |
7lfv[1] | R |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_SARS papain-like protease | |
7lfv[1] | S |
SO4
SULFATE ION[5 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_SARS papain-like protease | |
2gt7[1] | C |
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_CVHSA 3C-like proteinase | |
2v6n[8] | C |
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA REPLICASE POLYPROTEIN 1AB | |
6w79[4] | E |
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] |
A | 100.0 /100.0 |
3 /3 |
Main protease | |
2gtb[2] | C |
ACY
ACETIC ACID[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA 3C-like proteinase | |
2vj1[1] | C |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
1 /1 |
A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE | |
2vj1[2] | E |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
3 /3 |
A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE | |
2vj1[1] | F |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
B | 100.0 /100.0 |
3 /3 |
A7J8L3_CVHSA SARS CORONAVIRUS MAIN PROTEINASE | |
2z9j[6] | C |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA 3C-like proteinase | |
2z9j[6] | D |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
9 /9 |
R1AB_CVHSA 3C-like proteinase | |
2z9j[6] | G |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1AB_CVHSA 3C-like proteinase | |
3snc[14] | C |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_CVHSA 3C-like proteinase | |
3tiu[2] | B |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA SARS coronavirus main protease | |
3v3m[4] | C |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
8 /8 |
R1A_CVHSA 3C-like proteinase | |
4ovz[2] | E |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA Papain-like proteinase | |
4ow0[1] | G |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_CVHSA papain-like protease | |
6y7m[2] | C |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | D |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
8 /8 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | E |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | F |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | G |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS 3C-like proteinase | |
7rc1[2] | G |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1A_SARS 3C-like proteinase | |
2z9g[2] | C |
BNZ
BENZENE[6 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_CVHSA 3C-like proteinase | |
2z9j[2] | E |
DTZ
zinc(II)hydrogensulfide[3 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_CVHSA 3C-like proteinase | |
2z9k[2] | E |
DOZ
(dimethylamino)(hydroxy)zinc'[5 atoms] |
A | 100.0 /100.0 |
5 /5 |
R1AB_CVHSA 3C-like proteinase | |
2z9l[2] | E |
DAZ
diaminozinc[3 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1AB_CVHSA 3C-like proteinase | |
3snd[1] | E |
MRD
(4R)-2-METHYLPENTANE-2,4-DIOL[8 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA 3C-like proteinase | |
3vb3[2] | C |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1A_CVHSA 3C-like proteinase | |
7lmg[4] | E |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /100.0 |
2 /2 |
R1A_SARS 3C-like proteinase | |
7lmg[4] | E |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1A_SARS 3C-like proteinase | |
7lmj[2] | G |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS 3C-like proteinase | |
5y3q[1] | C |
BME
BETA-MERCAPTOETHANOL[4 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1A_CVHSA Replicase polyprotein 1a | |
7k0h[1] | G |
PG4
TETRAETHYLENE GLYCOL[13 atoms] |
B | 100.0 /100.0 |
10 /10 |
R1A_CVHSA Replicase polyprotein 1a | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |