[pdbjlvh2]Protein Model on 3mj5_A_1_C

Protein Model on 3mj5_A_1_C_1 (TEMPLATE: 3mj5 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:3]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1A_SARS)	A 1 (A)	polymer(polypeptide(L)) [312 aa]	Replicase polyprotein 1a :R1A_CVHSA
2	b		C 1 (A)	non-polymer(GRM)	N-(1,3-benzodioxol-5-ylmethyl)-1-[(1R)-1-naphthalen-1-ylethyl]piperidine-4-carboxamide	1702L 1703G 1704D 1787P 1788P 1808Y 1809Q 1813Y 1841T (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3mj5_A_1 identity=100.0%

queryA      1543:KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLT:1642
                :****************************************************************************************************:
3mj5_A_1       4:KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLT: 103
SecStr          :  EEEEEESSSSS EEEEE TTS HHHHTSSEEETTEE SS    TT TT EEEE   SHHHHHHHHHHH    TTHHHHHHHHHHHHTTS   EETTEE:    
ExpBur          :eebebebbbbeeeeeeeebeeeebbeeebeebbbebeebeeeebeeebeeeebbbebeeeebeebbeebbebeeeebbbebbebbeebeebebeebeebb:    

queryA      1643:SIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGV:1742
                :****************************************************************************************************:
3mj5_A_1     104:SIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGV: 203
SecStr          :     TTTHHHHHHHHHHTTS   BSSHHHHHHHHHHTTT  HHHHHHHHHHTT  TTS   HHHHHHHHHTTB  TT EEEEEEEETTTEEEEEEEETH:    
ExpBur          :bbeeeeebbbbbbbbbbbbebebebebebbeebbeebeeeebbbbbbbbbbbbeeeeeeebebeebbeebbebbebeebebbbbeebeeeeeeeeebeeb:    
Contact         :                                                           bbb                                      

queryA      1743:EAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTD:1842
                :****************************************************************************************************:
3mj5_A_1     204:EAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTD: 303
SecStr          :HHHEEES S HHHHHH EEEEETTTEEEEEEEEEEESSEEEEEEEEEEEEEETTS SEEEEEEE SSSEEEEEEEESSSEEEEETTEEEEESEEEEEEEE:    
ExpBur          :ebbbbeebbbbeebeeebeeebeeeeebebbbbebebebbbbbbeeeeeebeeeebebbbbbeeeeeeeebbbbbeeebbbebebeeeeeeeebebbbbb:    
Contact         :                                            bb                   bb   b                           b 

queryA      1843:VFYKETSYTTTI:1854
                :************:
3mj5_A_1     304:VFYKETSYTTTI: 315
SecStr          :EEEE SEEE   :    
ExpBur          :bbbebeeeeeee:

Protein Model on 3mj5_A_1_C_1 (TEMPLATE: 3mj5 )

Input Residue Numbers for Focused Sites