HOMCOS(prot_sch_conbars.cgi):

		Contact Molecules for Homologous Proteins
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PID

QueryLength

Homolgous Sequence in PDB

UniProt Query

TITLE

2624989

215

P09429(HMGB1_HUMAN)

RecName: Full=High mobility group protein B1;AltName: Full=High mobility group protein 1; Short=HMG-1;

QUERYSEQ

MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK
LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE

[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P09429(HMGB1_HUMAN)]

215
	region	name	description
	1-215	CHAIN	/note="High mobility group protein B1" /id="PRO_0000048526"
	9-79	DNA_BIND	/note="HMG box 1"
	95-163	DNA_BIND	/note="HMG box 2"
	1-97	REGION	/note="Sufficient for interaction with HAVCR2"
	3-15	REGION	/note="LPS binding (delipidated)"
	76-95	REGION	/note="Disordered"
	80-96	REGION	/note="LPS binding (Lipid A)"
	89-108	REGION	/note="Cytokine-stimulating activity"
	150-183	REGION	/note="Binding to AGER/RAGE"
	161-215	REGION	/note="Disordered"
	76-94	COMPBIAS	/note="Basic and acidic residues"
	161-187	COMPBIAS	/note="Basic and acidic residues"
	188-215	COMPBIAS	/note="Acidic residues"
	1-10	BINDING	/ligand="heparin" /ligand_id="ChEBI:CHEBI:28304"
	1-215	DISORDER	predicted by DISOPRED

MONOMER

215

pdb_id a¹ identity[%]² description

2yrq A 100.0 HMGB1_HUMAN High mobility group protein B1

6cij G 100.0 HMGB1_HUMAN High mobility group protein B1

5ze0 E 100.0 HMGB1_MOUSE HMGB1 A-B box

5ze1 E 100.0 HMGB1_MOUSE HMGB1 A-B box

5zdz E 100.0 HMGB1_MOUSE HMGB1 A-B box

5ze2 E 100.0 HMGB1_MOUSE HMGB1 A-B box

2rtu A 100.0 HMGB1_HUMAN High mobility group protein B1

2ly4 A 100.0 HMGB1_HUMAN High mobility group protein B1

2gzk C 67.1 Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1

1aab A 98.8 HMG1_RAT HIGH MOBILITY GROUP PROTEIN

1hsn A 100.0 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

1hsm A 100.0 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

1nhn A 100.0 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

1nhm A 100.0 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

1hmf A 100.0 HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B

1hme A 100.0 HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B

8i9m A 100.0 HMGB1_HUMAN High mobility group protein B1

4qr9 A 100.0 HMGB1_RAT High mobility group protein B1

4qr9 B 100.0 HMGB1_RAT High mobility group protein B1

6cik E 100.0 HMGB1_HUMAN High mobility group protein B1

6cim E 100.0 HMGB1_HUMAN High mobility group protein B1

1ckt C 100.0 HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN

1j3x A 89.6 HMG2_PIG High mobility group protein 2

6cg0 K 100.0 HMGB1_HUMAN High mobility group protein B1

1j3c A 89.5 HMG2_PIG High mobility group protein 2

1j3d A 88.2 HMG2_PIG High mobility group protein 2

2yqi A 77.0 HMGB3_HUMAN High mobility group protein B3

6oem J 100.0 HMGB1_HUMAN High mobility group protein B1

6oen J 100.0 HMGB1_HUMAN High mobility group protein B1

2eqz A 80.3 HMGB3_HUMAN High mobility group protein B3

6oeo I 100.0 HMGB1_HUMAN High mobility group protein B1

6cil E 100.0 HMGB1_HUMAN High mobility group protein B1

6oem I 100.0 HMGB1_HUMAN High mobility group protein B1

6oen I 100.0 HMGB1_HUMAN High mobility group protein B1

6oer I 100.0 HMGB1_HORSE High mobility group protein B1

1cg7 A 45.9 NHP6A_YEAST PROTEIN (NON HISTONE PROTEIN 6 A)

1lwm A 45.9 NHP6A_YEAST NONHISTONE CHROMOSOMAL PROTEIN 6A

1j5n C 45.9 NHP6A_YEAST Nonhistone chromosomal protein 6A

6l34 A 41.8 SSRP1_HUMAN FACT complex subunit SSRP1

1qrv C 44.3 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1hma A 44.3 HMGD_DROME HMG-D

1e7j A 44.3 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

2co9 A 41.9 Q8R4H0_MOUSE thymus high mobility group box protein TOX

3nm9 F 44.3 HMGD_DROME High mobility group protein D

3nm9 E 44.3 HMGD_DROME High mobility group protein D

3nm9 D 44.3 HMGD_DROME High mobility group protein D

3nm9 A 44.3 HMGD_DROME High mobility group protein D

3nm9 C 44.3 HMGD_DROME High mobility group protein D

3nm9 B 44.3 HMGD_DROME High mobility group protein D

1qrv D 46.0 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

2mrc A 42.3 Q8IB14_PLAF7 High mobility group protein

2lhj A 37.0 NHP1_BABBO High mobility group protein homolog NHP1

1wxl A 40.6 SSRP_DROME Single-strand recognition protein

5vwe A 39.7 SSRP1_HUMAN FACT complex subunit SSRP1

5jh0 D 39.1 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh A 30.3 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 A 30.3 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh G 30.3 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh J 30.3 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh D 39.1 ABF2_YEAST ARS-binding factor 2, mitochondrial

1wgf A 38.1 UBF1_MOUSE Upstream Binding Factor 1

2crj A 33.8 HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

4s2q C 30.2 SOX9_MOUSE Transcription factor SOX-9

1wz6 A 33.3 Q8CDV1_MOUSE HMG-BOX transcription factor BBX

4euw A 30.2 SOX9_HUMAN Transcription factor SOX-9

6hb4 A 28.9 TFAM_HUMAN Transcription factor A, mitochondrial

6erq A 29.3 TFAM_HUMAN Transcription factor A, mitochondrial

6erq D 29.3 TFAM_HUMAN Transcription factor A, mitochondrial

6erp D 29.3 TFAM_HUMAN Transcription factor A, mitochondrial

6erp A 29.3 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw A 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 G 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 J 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

3u2b C 30.0 SOX4_MOUSE Transcription factor SOX-4

4nnu B 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu A 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 D 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

3tq6 A 28.6 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw B 29.7 TFAM_HUMAN Transcription factor A, mitochondrial

7lbx A 29.7 TFAM_HUMAN Transcription factor A, mitochondrial

6hc3 J 29.7 TFAM_HUMAN Transcription factor A, mitochondrial

3tq6 B 29.7 TFAM_HUMAN Transcription factor A, mitochondrial

1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO

215 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

2ly4 B P53_HUMAN Cellular tumor antigen p53[47 aa] A 100.0
/100.0 17
/17 HMGB1_HUMAN High mobility group protein B1

6cij A RAG1_MOUSE V(D)J recombination-activating protein 1[614 aa] G 100.0
/100.0 3
/3 HMGB1_HUMAN High mobility group protein B1

6cij B RAG1_MOUSE V(D)J recombination-activating protein 1[616 aa] G 100.0
/100.0 1
/1 HMGB1_HUMAN High mobility group protein B1

8i9m B RAGE_HUMAN Advanced glycosylation end product-specific recept.. A 100.0
/100.0 14
/14 HMGB1_HUMAN High mobility group protein B1

6erp G RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa.. A 10.0
/29.3 10
/11 TFAM_HUMAN Transcription factor A, mitochondrial

6erp H RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1003 aa.. D 11.1
/29.3 9
/10 TFAM_HUMAN Transcription factor A, mitochondrial

6erq G RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa.. A 28.6
/29.3 7
/8 TFAM_HUMAN Transcription factor A, mitochondrial

6erq H RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1002 aa.. D 0.0
/29.3 6
/7 TFAM_HUMAN Transcription factor A, mitochondrial

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

NUCLEOTIDE

215 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1ckt A DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP.. C 100.0
/100.0 9
/9 HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN

1ckt B DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*.. C 100.0
/100.0 10
/10 HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN

4qr9 C DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') A 100.0
/100.0 11
/11 HMGB1_RAT High mobility group protein B1

4qr9 D DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') A 100.0
/100.0 10
/11 HMGB1_RAT High mobility group protein B1

4qr9 F DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') A 100.0
/100.0 2
/4 HMGB1_RAT High mobility group protein B1

4qr9 C DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') B 100.0
/100.0 10
/11 HMGB1_RAT High mobility group protein B1

4qr9 D DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') B 100.0
/100.0 11
/11 HMGB1_RAT High mobility group protein B1

5zdz I DNA (39-MER) E 100.0
/100.0 10
/10 HMGB1_MOUSE HMGB1 A-B box

5ze0 I DNA (54-MER) E 100.0
/100.0 12
/12 HMGB1_MOUSE HMGB1 A-B box

5ze1 I DNA E 100.0
/100.0 10
/10 HMGB1_MOUSE HMGB1 A-B box

5zdz K DNA chain M E 100.0
/100.0 11
/11 HMGB1_MOUSE HMGB1 A-B box

5ze0 K DNA (39-MER) E 100.0
/100.0 11
/11 HMGB1_MOUSE HMGB1 A-B box

5ze1 K DNA E 100.0
/100.0 12
/12 HMGB1_MOUSE HMGB1 A-B box

5ze2 H DNA (40-MER) E 100.0
/100.0 7
/7 HMGB1_MOUSE HMGB1 A-B box

5ze2 J DNA (40-MER) E 100.0
/100.0 10
/10 HMGB1_MOUSE HMGB1 A-B box

6cg0 H DNA (60-MER) K 100.0
/100.0 12
/12 HMGB1_HUMAN High mobility group protein B1

6cg0 J DNA (41-MER) K 100.0
/100.0 11
/11 HMGB1_HUMAN High mobility group protein B1

6cij K DNA (41-MER) G 100.0
/100.0 12
/12 HMGB1_HUMAN High mobility group protein B1

6cij F DNA (60-MER) G 100.0
/100.0 10
/10 HMGB1_HUMAN High mobility group protein B1

6cik H Nicked 23RSS intermediate reverse strand E 100.0
/100.0 10
/10 HMGB1_HUMAN High mobility group protein B1

6cik J Nicked 23RSS intermediate forward strand E 100.0
/100.0 6
/6 HMGB1_HUMAN High mobility group protein B1

6cil H Intact 23RSS substrate reverse strand E 100.0
/100.0 5
/5 HMGB1_HUMAN High mobility group protein B1

6cim I Intact 23RSS substrate reverse strand E 100.0
/100.0 10
/10 HMGB1_HUMAN High mobility group protein B1

6cim J Intact 23RSS substrate forward strand E 100.0
/100.0 5
/5 HMGB1_HUMAN High mobility group protein B1

6oem E DNA (57-MER) I 100.0
/100.0 7
/7 HMGB1_HUMAN High mobility group protein B1

6oen E DNA (57-MER) I 100.0
/100.0 7
/7 HMGB1_HUMAN High mobility group protein B1

6oem H DNA (57-MER) I 100.0
/100.0 7
/7 HMGB1_HUMAN High mobility group protein B1

6oen H DNA (57-MER) I 100.0
/100.0 8
/8 HMGB1_HUMAN High mobility group protein B1

6oer H DNA (57-MER) I 100.0
/100.0 4
/4 HMGB1_HORSE High mobility group protein B1

6oem F DNA (46-MER) J 100.0
/100.0 8
/8 HMGB1_HUMAN High mobility group protein B1

6oen F DNA (46-MER) J 100.0
/100.0 8
/8 HMGB1_HUMAN High mobility group protein B1

6oeo F DNA (46-MER) I 100.0
/100.0 8
/8 HMGB1_HUMAN High mobility group protein B1

6oem G DNA (46-MER) J 100.0
/100.0 5
/5 HMGB1_HUMAN High mobility group protein B1

6oen G DNA (46-MER) J 100.0
/100.0 3
/3 HMGB1_HUMAN High mobility group protein B1

6oeo E DNA (46-MER) I 100.0
/100.0 2
/2 HMGB1_HUMAN High mobility group protein B1

6oer G DNA (57-MER) I 100.0
/100.0 5
/5 HMGB1_HORSE High mobility group protein B1

2gzk A 5'-D(*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*GP.. C 71.4
/67.1 28
/33 Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1

2gzk B 5'-D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP.. C 75.0
/67.1 24
/26 Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1

1qrv A DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') C 46.7
/44.3 15
/16 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1qrv B DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') C 50.0
/44.3 8
/8 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1qrv A DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') D 0.0
/46.0 3
/3 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1qrv B DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') D 0.0
/46.0 1
/1 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1j5n A 5'-D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G).. C 33.3
/45.9 12
/18 NHP6A_YEAST Nonhistone chromosomal protein 6A

1j5n B 5'-D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C).. C 61.5
/45.9 13
/16 NHP6A_YEAST Nonhistone chromosomal protein 6A

1e7j B DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*.. A 33.3
/44.3 6
/6 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

1e7j C DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3').. A 80.0
/44.3 5
/5 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

3nm9 G DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' A 50.0
/44.3 2
/2 HMGD_DROME High mobility group protein D

3nm9 H DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' A 66.7
/44.3 3
/3 HMGD_DROME High mobility group protein D

3nm9 O DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' A 60.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 P DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' A 66.7
/44.3 6
/6 HMGD_DROME High mobility group protein D

3nm9 I DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' B 57.1
/44.3 7
/7 HMGD_DROME High mobility group protein D

3nm9 J DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' B 60.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 P DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' B 0.0
/44.3 1
/1 HMGD_DROME High mobility group protein D

3nm9 I DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' C 100.0
/44.3 4
/4 HMGD_DROME High mobility group protein D

3nm9 J DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' C 60.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 K DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' C 50.0
/44.3 4
/4 HMGD_DROME High mobility group protein D

3nm9 L DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' C 50.0
/44.3 4
/4 HMGD_DROME High mobility group protein D

3nm9 J DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' D 100.0
/44.3 1
/1 HMGD_DROME High mobility group protein D

3nm9 M DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' D 40.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 O DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' E 75.0
/44.3 8
/8 HMGD_DROME High mobility group protein D

3nm9 P DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' E 60.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 M DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' F 71.4
/44.3 7
/7 HMGD_DROME High mobility group protein D

3nm9 N DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' B 100.0
/44.3 4
/4 HMGD_DROME High mobility group protein D

3nm9 N DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' D 40.0
/44.3 5
/5 HMGD_DROME High mobility group protein D

3nm9 N DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' F 50.0
/44.3 6
/6 HMGD_DROME High mobility group protein D

5jh0 B DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. A 41.7
/30.3 12
/16 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 E DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. A 44.4
/30.3 18
/18 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 B DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. D 50.0
/39.1 14
/16 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 C DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. A 28.6
/30.3 7
/10 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 F DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. A 50.0
/30.3 12
/12 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jh0 C DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. D 55.6
/39.1 9
/9 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh B DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. A 50.0
/30.3 12
/17 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh E DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. A 42.9
/30.3 14
/14 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh B DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. D 50.0
/39.1 16
/17 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh H DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. G 46.2
/30.3 13
/16 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh K DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. G 46.2
/30.3 13
/13 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh H DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. J 42.9
/30.3 14
/14 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh K DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. J 46.2
/30.3 13
/14 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh C DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. A 20.0
/30.3 5
/7 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh F DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. A 45.5
/30.3 11
/11 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh C DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. D 62.5
/39.1 8
/8 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh I DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. G 28.6
/30.3 7
/11 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh L DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. G 25.0
/30.3 8
/8 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh I DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. J 37.5
/30.3 8
/8 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh L DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. J 25.0
/30.3 8
/10 ABF2_YEAST ARS-binding factor 2, mitochondrial

4euw B DNA (5'-D(*CP*TP*CP*TP*TP*TP*GP*AP*GP*AP*AP*G)-3').. A 36.4
/30.2 11
/12 SOX9_HUMAN Transcription factor SOX-9

4euw C DNA (5'-D(*CP*TP*TP*CP*TP*CP*AP*AP*AP*GP*AP*G)-3').. A 33.3
/30.2 9
/12 SOX9_HUMAN Transcription factor SOX-9

4s2q A DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP.. C 46.2
/30.2 13
/16 SOX9_MOUSE Transcription factor SOX-9

4s2q B DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP.. C 37.5
/30.2 8
/12 SOX9_MOUSE Transcription factor SOX-9

3u2b A DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*.. C 35.7
/30.0 14
/14 SOX4_MOUSE Transcription factor SOX-4

3u2b B DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*.. C 27.3
/30.0 11
/15 SOX4_MOUSE Transcription factor SOX-4

3tq6 C DNA (5'-D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*.. A 28.0
/28.6 25
/28 TFAM_HUMAN Transcription factor A, mitochondrial

3tq6 E DNA (5'-D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*.. B 33.3
/29.7 24
/30 TFAM_HUMAN Transcription factor A, mitochondrial

3tq6 D DNA (5'-D(*GP*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*.. A 36.0
/28.6 25
/27 TFAM_HUMAN Transcription factor A, mitochondrial

3tq6 F DNA (5'-D(*GP*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*.. B 37.0
/29.7 27
/28 TFAM_HUMAN Transcription factor A, mitochondrial

6hc3 K DNA/RNA (5'-D(*TP*AP*AP*CP*AP*AP*AP*AP*AP*AP*TP*TP.. J 44.4
/29.7 18
/24 TFAM_HUMAN Transcription factor A, mitochondrial

6hc3 L DNA (5'-D(*TP*TP*TP*GP*GP*TP*GP*GP*AP*AP*AP*TP*TP*.. J 33.3
/29.7 27
/28 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw C DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. A 50.0
/28.6 16
/18 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw E DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. A 44.4
/28.6 9
/11 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw C DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. B 44.4
/29.7 9
/12 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw E DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. B 57.1
/29.7 14
/17 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw D DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. A 33.3
/28.6 12
/14 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw F DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. A 33.3
/28.6 12
/12 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw D DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. B 36.4
/29.7 11
/11 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw F DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. B 35.3
/29.7 17
/19 TFAM_HUMAN Transcription factor A, mitochondrial

7lbx C DNA (5'-D(P*TP*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP.. A 41.7
/29.7 24
/27 TFAM_HUMAN Transcription factor A, mitochondrial

7lbx D DNA (5'-D(P*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP.. A 32.0
/29.7 25
/26 TFAM_HUMAN Transcription factor A, mitochondrial

6erp B Non-Template DNA A 37.5
/29.3 24
/24 TFAM_HUMAN Transcription factor A, mitochondrial

6erp E Non-Template DNA D 32.0
/29.3 25
/26 TFAM_HUMAN Transcription factor A, mitochondrial

6erp C Template DNA A 42.9
/29.3 21
/24 TFAM_HUMAN Transcription factor A, mitochondrial

6erp F Template DNA D 39.1
/29.3 23
/27 TFAM_HUMAN Transcription factor A, mitochondrial

6erq B Non-Template DNA A 33.3
/29.3 24
/24 TFAM_HUMAN Transcription factor A, mitochondrial

6erq E Non-Template DNA D 31.8
/29.3 22
/23 TFAM_HUMAN Transcription factor A, mitochondrial

6erq C Template DNA A 55.6
/29.3 18
/21 TFAM_HUMAN Transcription factor A, mitochondrial

6erq F Template DNA D 44.4
/29.3 27
/31 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu C DNA1 A 40.0
/28.6 25
/30 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu D DNA1 B 29.2
/28.6 24
/28 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu E DNA2 A 38.1
/28.6 21
/22 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu F DNA2 A 33.3
/28.6 3
/3 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu E DNA2 B 33.3
/28.6 3
/3 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu F DNA2 B 42.9
/28.6 21
/23 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 B DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. A 36.7
/28.9 30
/33 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 E DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. D 36.7
/28.6 30
/35 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 H DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. G 50.0
/28.6 24
/25 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 K DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. J 44.0
/28.6 25
/27 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 C DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. A 40.0
/28.9 20
/21 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 F DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. D 45.0
/28.6 20
/21 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 I DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. G 40.0
/28.6 20
/21 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 L DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. J 40.0
/28.6 20
/23 TFAM_HUMAN Transcription factor A, mitochondrial

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

METAL

215 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1qrv E NA
SODIUM ION[1 atoms] C 0.0
/44.3 1
/1 HMGD_DROME HIGH MOBILITY GROUP PROTEIN D

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

HOMO

215 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

4qr9 B HMGB1_RAT High mobility group protein B1[75 aa] A 100.0
/100.0 5
/5 HMGB1_RAT High mobility group protein B1

4qr9 A HMGB1_RAT High mobility group protein B1[75 aa] B 100.0
/100.0 5
/5 HMGB1_RAT High mobility group protein B1

3nm9 E HMGD_DROME High mobility group protein D[73 aa] B 75.0
/44.3 4
/4 HMGD_DROME High mobility group protein D

3nm9 F HMGD_DROME High mobility group protein D[73 aa] B 66.7
/44.3 6
/6 HMGD_DROME High mobility group protein D

3nm9 D HMGD_DROME High mobility group protein D[73 aa] C 50.0
/44.3 6
/6 HMGD_DROME High mobility group protein D

3nm9 C HMGD_DROME High mobility group protein D[73 aa] D 57.1
/44.3 7
/7 HMGD_DROME High mobility group protein D

3nm9 B HMGD_DROME High mobility group protein D[73 aa] E 75.0
/44.3 8
/8 HMGD_DROME High mobility group protein D

3nm9 B HMGD_DROME High mobility group protein D[73 aa] F 57.1
/44.3 7
/7 HMGD_DROME High mobility group protein D

4nnu B TFAM_HUMAN Transcription factor A, mitochondrial[192 aa] A 66.7
/28.6 3
/13 TFAM_HUMAN Transcription factor A, mitochondrial

4nnu A TFAM_HUMAN Transcription factor A, mitochondrial[193 aa] B 50.0
/28.6 4
/13 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw B TFAM_HUMAN Transcription factor A, mitochondrial[190 aa] A 50.0
/28.6 4
/10 TFAM_HUMAN Transcription factor A, mitochondrial

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

PRECIPITANT

215 pdb_id contact mol homologue

a³ description a⁴ identity[%]⁵ Ncon⁶ description

1hsm B BME
BETA-MERCAPTOETHANOL[4 atoms] A 100.0
/100.0 4
/4 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

1hsn B BME
BETA-MERCAPTOETHANOL[4 atoms] A 100.0
/100.0 4
/4 HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1

5jgh M ACT
ACETATE ION[4 atoms] G 50.0
/30.3 4
/4 ABF2_YEAST ARS-binding factor 2, mitochondrial

5jgh N ACT
ACETATE ION[4 atoms] G 100.0
/30.3 1
/1 ABF2_YEAST ARS-binding factor 2, mitochondrial

3tq6 G 1PE
PENTAETHYLENE GLYCOL[16 atoms] B 50.0
/29.7 2
/6 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 O 1PE
PENTAETHYLENE GLYCOL[16 atoms] A 100.0
/28.9 1
/3 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 Q 1PE
PENTAETHYLENE GLYCOL[16 atoms] D 0.0
/28.6 1
/5 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 R 1PE
PENTAETHYLENE GLYCOL[16 atoms] G 50.0
/28.6 2
/7 TFAM_HUMAN Transcription factor A, mitochondrial

6hc3 U 1PE
PENTAETHYLENE GLYCOL[15 atoms] J 50.0
/29.7 2
/6 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw H EDO
1,2-ETHANEDIOL[4 atoms] A 0.0
/28.6 3
/4 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw G EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/29.7 1
/3 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw K EDO
1,2-ETHANEDIOL[4 atoms] B 0.0
/29.7 2
/2 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw L EDO
1,2-ETHANEDIOL[4 atoms] B 33.3
/29.7 3
/3 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw O EDO
1,2-ETHANEDIOL[4 atoms] B 100.0
/29.7 2
/2 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw M PEG
DI(HYDROXYETHYL)ETHER[7 atoms] B 0.0
/29.7 2
/2 TFAM_HUMAN Transcription factor A, mitochondrial

7lbw N PEG
DI(HYDROXYETHYL)ETHER[7 atoms] B 50.0
/29.7 2
/5 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 M GOL
GLYCEROL[6 atoms] A 50.0
/28.9 4
/4 TFAM_HUMAN Transcription factor A, mitochondrial

6hb4 N GOL
GLYCEROL[6 atoms] A 50.0
/28.9 2
/2 TFAM_HUMAN Transcription factor A, mitochondrial

3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

MONOMER
215
	pdb_id	a¹	identity[%]²	description
	2yrq	A	100.0	HMGB1_HUMAN High mobility group protein B1
	6cij	G	100.0	HMGB1_HUMAN High mobility group protein B1
	5ze0	E	100.0	HMGB1_MOUSE HMGB1 A-B box
	5ze1	E	100.0	HMGB1_MOUSE HMGB1 A-B box
	5zdz	E	100.0	HMGB1_MOUSE HMGB1 A-B box
	5ze2	E	100.0	HMGB1_MOUSE HMGB1 A-B box
	2rtu	A	100.0	HMGB1_HUMAN High mobility group protein B1
	2ly4	A	100.0	HMGB1_HUMAN High mobility group protein B1
	2gzk	C	67.1	Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1
	1aab	A	98.8	HMG1_RAT HIGH MOBILITY GROUP PROTEIN
	1hsn	A	100.0	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	1hsm	A	100.0	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	1nhn	A	100.0	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	1nhm	A	100.0	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	1hmf	A	100.0	HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
	1hme	A	100.0	HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
	8i9m	A	100.0	HMGB1_HUMAN High mobility group protein B1
	4qr9	A	100.0	HMGB1_RAT High mobility group protein B1
	4qr9	B	100.0	HMGB1_RAT High mobility group protein B1
	6cik	E	100.0	HMGB1_HUMAN High mobility group protein B1
	6cim	E	100.0	HMGB1_HUMAN High mobility group protein B1
	1ckt	C	100.0	HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN
	1j3x	A	89.6	HMG2_PIG High mobility group protein 2
	6cg0	K	100.0	HMGB1_HUMAN High mobility group protein B1
	1j3c	A	89.5	HMG2_PIG High mobility group protein 2
	1j3d	A	88.2	HMG2_PIG High mobility group protein 2
	2yqi	A	77.0	HMGB3_HUMAN High mobility group protein B3
	6oem	J	100.0	HMGB1_HUMAN High mobility group protein B1
	6oen	J	100.0	HMGB1_HUMAN High mobility group protein B1
	2eqz	A	80.3	HMGB3_HUMAN High mobility group protein B3
	6oeo	I	100.0	HMGB1_HUMAN High mobility group protein B1
	6cil	E	100.0	HMGB1_HUMAN High mobility group protein B1
	6oem	I	100.0	HMGB1_HUMAN High mobility group protein B1
	6oen	I	100.0	HMGB1_HUMAN High mobility group protein B1
	6oer	I	100.0	HMGB1_HORSE High mobility group protein B1
	1cg7	A	45.9	NHP6A_YEAST PROTEIN (NON HISTONE PROTEIN 6 A)
	1lwm	A	45.9	NHP6A_YEAST NONHISTONE CHROMOSOMAL PROTEIN 6A
	1j5n	C	45.9	NHP6A_YEAST Nonhistone chromosomal protein 6A
	6l34	A	41.8	SSRP1_HUMAN FACT complex subunit SSRP1
	1qrv	C	44.3	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1hma	A	44.3	HMGD_DROME HMG-D
	1e7j	A	44.3	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	2co9	A	41.9	Q8R4H0_MOUSE thymus high mobility group box protein TOX
	3nm9	F	44.3	HMGD_DROME High mobility group protein D
	3nm9	E	44.3	HMGD_DROME High mobility group protein D
	3nm9	D	44.3	HMGD_DROME High mobility group protein D
	3nm9	A	44.3	HMGD_DROME High mobility group protein D
	3nm9	C	44.3	HMGD_DROME High mobility group protein D
	3nm9	B	44.3	HMGD_DROME High mobility group protein D
	1qrv	D	46.0	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	2mrc	A	42.3	Q8IB14_PLAF7 High mobility group protein
	2lhj	A	37.0	NHP1_BABBO High mobility group protein homolog NHP1
	1wxl	A	40.6	SSRP_DROME Single-strand recognition protein
	5vwe	A	39.7	SSRP1_HUMAN FACT complex subunit SSRP1
	5jh0	D	39.1	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	A	30.3	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	A	30.3	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	G	30.3	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	J	30.3	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	D	39.1	ABF2_YEAST ARS-binding factor 2, mitochondrial
	1wgf	A	38.1	UBF1_MOUSE Upstream Binding Factor 1
	2crj	A	33.8	HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related
	4s2q	C	30.2	SOX9_MOUSE Transcription factor SOX-9
	1wz6	A	33.3	Q8CDV1_MOUSE HMG-BOX transcription factor BBX
	4euw	A	30.2	SOX9_HUMAN Transcription factor SOX-9
	6hb4	A	28.9	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	A	29.3	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	D	29.3	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	D	29.3	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	A	29.3	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	A	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	G	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	J	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	3u2b	C	30.0	SOX4_MOUSE Transcription factor SOX-4
	4nnu	B	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	A	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	D	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	3tq6	A	28.6	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	B	29.7	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbx	A	29.7	TFAM_HUMAN Transcription factor A, mitochondrial
	6hc3	J	29.7	TFAM_HUMAN Transcription factor A, mitochondrial
	3tq6	B	29.7	TFAM_HUMAN Transcription factor A, mitochondrial
	1.a¹:asym_id for the homologue. 2.identity[%]²:sequence identity between the query and the homologue.

HETERO
215	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	2ly4	B	P53_HUMAN Cellular tumor antigen p53[47 aa]	A	100.0 /100.0	17 /17	HMGB1_HUMAN High mobility group protein B1
	6cij	A	RAG1_MOUSE V(D)J recombination-activating protein 1[614 aa]	G	100.0 /100.0	3 /3	HMGB1_HUMAN High mobility group protein B1
	6cij	B	RAG1_MOUSE V(D)J recombination-activating protein 1[616 aa]	G	100.0 /100.0	1 /1	HMGB1_HUMAN High mobility group protein B1
	8i9m	B	RAGE_HUMAN Advanced glycosylation end product-specific recept..	A	100.0 /100.0	14 /14	HMGB1_HUMAN High mobility group protein B1
	6erp	G	RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa..	A	10.0 /29.3	10 /11	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	H	RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1003 aa..	D	11.1 /29.3	9 /10	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	G	RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa..	A	28.6 /29.3	7 /8	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	H	RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1002 aa..	D	0.0 /29.3	6 /7	TFAM_HUMAN Transcription factor A, mitochondrial
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
215	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	1ckt	A	DNA (5'-D(CPCP(5IU)PCPTPCPTPGPGPAPCPCP..	C	100.0 /100.0	9 /9	HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN
	1ckt	B	DNA (5'-D(GPGPAPAPGPGPTPCPCPAPGPAPGP..	C	100.0 /100.0	10 /10	HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN
	4qr9	C	DNA (5'-D(APTPAPTPCPGPAPTPAPT)-3')	A	100.0 /100.0	11 /11	HMGB1_RAT High mobility group protein B1
	4qr9	D	DNA (5'-D(APTPAPTPCPGPAPTPAPT)-3')	A	100.0 /100.0	10 /11	HMGB1_RAT High mobility group protein B1
	4qr9	F	DNA (5'-D(APTPAPTPCPGPAPTPAPT)-3')	A	100.0 /100.0	2 /4	HMGB1_RAT High mobility group protein B1
	4qr9	C	DNA (5'-D(APTPAPTPCPGPAPTPAPT)-3')	B	100.0 /100.0	10 /11	HMGB1_RAT High mobility group protein B1
	4qr9	D	DNA (5'-D(APTPAPTPCPGPAPTPAPT)-3')	B	100.0 /100.0	11 /11	HMGB1_RAT High mobility group protein B1
	5zdz	I	DNA (39-MER)	E	100.0 /100.0	10 /10	HMGB1_MOUSE HMGB1 A-B box
	5ze0	I	DNA (54-MER)	E	100.0 /100.0	12 /12	HMGB1_MOUSE HMGB1 A-B box
	5ze1	I	DNA	E	100.0 /100.0	10 /10	HMGB1_MOUSE HMGB1 A-B box
	5zdz	K	DNA chain M	E	100.0 /100.0	11 /11	HMGB1_MOUSE HMGB1 A-B box
	5ze0	K	DNA (39-MER)	E	100.0 /100.0	11 /11	HMGB1_MOUSE HMGB1 A-B box
	5ze1	K	DNA	E	100.0 /100.0	12 /12	HMGB1_MOUSE HMGB1 A-B box
	5ze2	H	DNA (40-MER)	E	100.0 /100.0	7 /7	HMGB1_MOUSE HMGB1 A-B box
	5ze2	J	DNA (40-MER)	E	100.0 /100.0	10 /10	HMGB1_MOUSE HMGB1 A-B box
	6cg0	H	DNA (60-MER)	K	100.0 /100.0	12 /12	HMGB1_HUMAN High mobility group protein B1
	6cg0	J	DNA (41-MER)	K	100.0 /100.0	11 /11	HMGB1_HUMAN High mobility group protein B1
	6cij	K	DNA (41-MER)	G	100.0 /100.0	12 /12	HMGB1_HUMAN High mobility group protein B1
	6cij	F	DNA (60-MER)	G	100.0 /100.0	10 /10	HMGB1_HUMAN High mobility group protein B1
	6cik	H	Nicked 23RSS intermediate reverse strand	E	100.0 /100.0	10 /10	HMGB1_HUMAN High mobility group protein B1
	6cik	J	Nicked 23RSS intermediate forward strand	E	100.0 /100.0	6 /6	HMGB1_HUMAN High mobility group protein B1
	6cil	H	Intact 23RSS substrate reverse strand	E	100.0 /100.0	5 /5	HMGB1_HUMAN High mobility group protein B1
	6cim	I	Intact 23RSS substrate reverse strand	E	100.0 /100.0	10 /10	HMGB1_HUMAN High mobility group protein B1
	6cim	J	Intact 23RSS substrate forward strand	E	100.0 /100.0	5 /5	HMGB1_HUMAN High mobility group protein B1
	6oem	E	DNA (57-MER)	I	100.0 /100.0	7 /7	HMGB1_HUMAN High mobility group protein B1
	6oen	E	DNA (57-MER)	I	100.0 /100.0	7 /7	HMGB1_HUMAN High mobility group protein B1
	6oem	H	DNA (57-MER)	I	100.0 /100.0	7 /7	HMGB1_HUMAN High mobility group protein B1
	6oen	H	DNA (57-MER)	I	100.0 /100.0	8 /8	HMGB1_HUMAN High mobility group protein B1
	6oer	H	DNA (57-MER)	I	100.0 /100.0	4 /4	HMGB1_HORSE High mobility group protein B1
	6oem	F	DNA (46-MER)	J	100.0 /100.0	8 /8	HMGB1_HUMAN High mobility group protein B1
	6oen	F	DNA (46-MER)	J	100.0 /100.0	8 /8	HMGB1_HUMAN High mobility group protein B1
	6oeo	F	DNA (46-MER)	I	100.0 /100.0	8 /8	HMGB1_HUMAN High mobility group protein B1
	6oem	G	DNA (46-MER)	J	100.0 /100.0	5 /5	HMGB1_HUMAN High mobility group protein B1
	6oen	G	DNA (46-MER)	J	100.0 /100.0	3 /3	HMGB1_HUMAN High mobility group protein B1
	6oeo	E	DNA (46-MER)	I	100.0 /100.0	2 /2	HMGB1_HUMAN High mobility group protein B1
	6oer	G	DNA (57-MER)	I	100.0 /100.0	5 /5	HMGB1_HORSE High mobility group protein B1
	2gzk	A	5'-D(GPGPGPAPTPCPTPAPAPAPCPAPAPTP*GP..	C	71.4 /67.1	28 /33	Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1
	2gzk	B	5'-D(GPCPAPTPTPGPTPTPTPAPGPAPTPCP*CP..	C	75.0 /67.1	24 /26	Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1
	1qrv	A	DNA (5'-D(GPCPGPAPTPAPTPCPGPC)-3')	C	46.7 /44.3	15 /16	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1qrv	B	DNA (5'-D(GPCPGPAPTPAPTPCPGPC)-3')	C	50.0 /44.3	8 /8	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1qrv	A	DNA (5'-D(GPCPGPAPTPAPTPCPGPC)-3')	D	0.0 /46.0	3 /3	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1qrv	B	DNA (5'-D(GPCPGPAPTPAPTPCPGPC)-3')	D	0.0 /46.0	1 /1	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1j5n	A	5'-D(GPGPGPGPTPGPAPTPTPGPTPTPCPAP*G)..	C	33.3 /45.9	12 /18	NHP6A_YEAST Nonhistone chromosomal protein 6A
	1j5n	B	5'-D(CPTPGPAPAPCPAPAPTPCPAPCPCPCP*C)..	C	61.5 /45.9	13 /16	NHP6A_YEAST Nonhistone chromosomal protein 6A
	1e7j	B	DNA (5'-D(CPGPAPTPAPTPTPAPAPGPAPGPCP..	A	33.3 /44.3	6 /6	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	1e7j	C	DNA (5'-D(GPGPCPTPCPAPAPTPAPTPCPG)-3')..	A	80.0 /44.3	5 /5	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	3nm9	G	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	A	50.0 /44.3	2 /2	HMGD_DROME High mobility group protein D
	3nm9	H	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	A	66.7 /44.3	3 /3	HMGD_DROME High mobility group protein D
	3nm9	O	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	A	60.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	P	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	A	66.7 /44.3	6 /6	HMGD_DROME High mobility group protein D
	3nm9	I	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	B	57.1 /44.3	7 /7	HMGD_DROME High mobility group protein D
	3nm9	J	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	B	60.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	P	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	B	0.0 /44.3	1 /1	HMGD_DROME High mobility group protein D
	3nm9	I	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	C	100.0 /44.3	4 /4	HMGD_DROME High mobility group protein D
	3nm9	J	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	C	60.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	K	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	C	50.0 /44.3	4 /4	HMGD_DROME High mobility group protein D
	3nm9	L	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	C	50.0 /44.3	4 /4	HMGD_DROME High mobility group protein D
	3nm9	J	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	D	100.0 /44.3	1 /1	HMGD_DROME High mobility group protein D
	3nm9	M	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	D	40.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	O	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	E	75.0 /44.3	8 /8	HMGD_DROME High mobility group protein D
	3nm9	P	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	E	60.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	M	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	F	71.4 /44.3	7 /7	HMGD_DROME High mobility group protein D
	3nm9	N	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	B	100.0 /44.3	4 /4	HMGD_DROME High mobility group protein D
	3nm9	N	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	D	40.0 /44.3	5 /5	HMGD_DROME High mobility group protein D
	3nm9	N	DNA 5'-D(GGPCPGPAPTPAPTPCPGP*C)-3'	F	50.0 /44.3	6 /6	HMGD_DROME High mobility group protein D
	5jh0	B	DNA (5'-D(APAPTPAPAPTPAPAPAPTPTPAPTP..	A	41.7 /30.3	12 /16	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	E	DNA (5'-D(APAPTPAPAPTPAPAPAPTPTPAPTP..	A	44.4 /30.3	18 /18	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	B	DNA (5'-D(APAPTPAPAPTPAPAPAPTPTPAPTP..	D	50.0 /39.1	14 /16	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	C	DNA (5'-D(TPTPAPTPAPTPTPAPTPAPTPAPAP..	A	28.6 /30.3	7 /10	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	F	DNA (5'-D(TPTPAPTPAPTPTPAPTPAPTPAPAP..	A	50.0 /30.3	12 /12	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jh0	C	DNA (5'-D(TPTPAPTPAPTPTPAPTPAPTPAPAP..	D	55.6 /39.1	9 /9	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	B	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	A	50.0 /30.3	12 /17	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	E	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	A	42.9 /30.3	14 /14	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	B	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	D	50.0 /39.1	16 /17	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	H	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	G	46.2 /30.3	13 /16	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	K	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	G	46.2 /30.3	13 /13	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	H	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	J	42.9 /30.3	14 /14	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	K	DNA (5'-D(TPTPTPAPTPTPAPTPTPTPTPAPTP..	J	46.2 /30.3	13 /14	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	C	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	A	20.0 /30.3	5 /7	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	F	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	A	45.5 /30.3	11 /11	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	C	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	D	62.5 /39.1	8 /8	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	I	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	G	28.6 /30.3	7 /11	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	L	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	G	25.0 /30.3	8 /8	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	I	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	J	37.5 /30.3	8 /8	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	L	DNA (5'-D(TPTPAPTPAPTPAPAPTPAPTPAPAP..	J	25.0 /30.3	8 /10	ABF2_YEAST ARS-binding factor 2, mitochondrial
	4euw	B	DNA (5'-D(CPTPCPTPTPTPGPAPGPAPAPG)-3')..	A	36.4 /30.2	11 /12	SOX9_HUMAN Transcription factor SOX-9
	4euw	C	DNA (5'-D(CPTPTPCPTPCPAPAPAPGPAPG)-3')..	A	33.3 /30.2	9 /12	SOX9_HUMAN Transcription factor SOX-9
	4s2q	A	DNA (5'-D(PAPGPGPCPTPTPTPGPTPTPCPTP*CP..	C	46.2 /30.2	13 /16	SOX9_MOUSE Transcription factor SOX-9
	4s2q	B	DNA (5'-D(PAPGPGPAPGPAPAPCPAPAPAPGP*CP..	C	37.5 /30.2	8 /12	SOX9_MOUSE Transcription factor SOX-9
	3u2b	A	DNA (5'-D(GPTPCPTPCPTPAPTPTPGPTPCPCP..	C	35.7 /30.0	14 /14	SOX4_MOUSE Transcription factor SOX-4
	3u2b	B	DNA (5'-D(CPCPAPGPGPAPCPAPAPTPAPGPAP..	C	27.3 /30.0	11 /15	SOX4_MOUSE Transcription factor SOX-4
	3tq6	C	DNA (5'-D(TPAPAPCPAPGPTPCPAPCPCPCPCP..	A	28.0 /28.6	25 /28	TFAM_HUMAN Transcription factor A, mitochondrial
	3tq6	E	DNA (5'-D(TPAPAPCPAPGPTPCPAPCPCPCPCP..	B	33.3 /29.7	24 /30	TFAM_HUMAN Transcription factor A, mitochondrial
	3tq6	D	DNA (5'-D(GPTPTPAPGPTPTPGPGPGPGPGPGP..	A	36.0 /28.6	25 /27	TFAM_HUMAN Transcription factor A, mitochondrial
	3tq6	F	DNA (5'-D(GPTPTPAPGPTPTPGPGPGPGPGPGP..	B	37.0 /29.7	27 /28	TFAM_HUMAN Transcription factor A, mitochondrial
	6hc3	K	DNA/RNA (5'-D(TPAPAPCPAPAPAPAPAPAPTPTP..	J	44.4 /29.7	18 /24	TFAM_HUMAN Transcription factor A, mitochondrial
	6hc3	L	DNA (5'-D(TPTPTPGPGPTPGPGPAPAPAPTPTP..	J	33.3 /29.7	27 /28	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	C	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	A	50.0 /28.6	16 /18	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	E	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	A	44.4 /28.6	9 /11	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	C	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	B	44.4 /29.7	9 /12	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	E	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	B	57.1 /29.7	14 /17	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	D	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	A	33.3 /28.6	12 /14	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	F	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	A	33.3 /28.6	12 /12	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	D	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	B	36.4 /29.7	11 /11	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	F	DNA (5'-D(PTPAPGPCPCPTPTPTPCPTPAPTP*TP..	B	35.3 /29.7	17 /19	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbx	C	DNA (5'-D(PTPTPAPAPCPAPGPTPCPAPCPCP*CP..	A	41.7 /29.7	24 /27	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbx	D	DNA (5'-D(PTPTPAPGPTPTPGPGPGPGPGPGP*TP..	A	32.0 /29.7	25 /26	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	B	Non-Template DNA	A	37.5 /29.3	24 /24	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	E	Non-Template DNA	D	32.0 /29.3	25 /26	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	C	Template DNA	A	42.9 /29.3	21 /24	TFAM_HUMAN Transcription factor A, mitochondrial
	6erp	F	Template DNA	D	39.1 /29.3	23 /27	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	B	Non-Template DNA	A	33.3 /29.3	24 /24	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	E	Non-Template DNA	D	31.8 /29.3	22 /23	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	C	Template DNA	A	55.6 /29.3	18 /21	TFAM_HUMAN Transcription factor A, mitochondrial
	6erq	F	Template DNA	D	44.4 /29.3	27 /31	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	C	DNA1	A	40.0 /28.6	25 /30	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	D	DNA1	B	29.2 /28.6	24 /28	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	E	DNA2	A	38.1 /28.6	21 /22	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	F	DNA2	A	33.3 /28.6	3 /3	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	E	DNA2	B	33.3 /28.6	3 /3	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	F	DNA2	B	42.9 /28.6	21 /23	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	B	DNA (5'CPTPGPTPGPCPAPGPAPCPAPTPTPCP*..	A	36.7 /28.9	30 /33	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	E	DNA (5'CPTPGPTPGPCPAPGPAPCPAPTPTPCP*..	D	36.7 /28.6	30 /35	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	H	DNA (5'CPTPGPTPGPCPAPGPAPCPAPTPTPCP*..	G	50.0 /28.6	24 /25	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	K	DNA (5'CPTPGPTPGPCPAPGPAPCPAPTPTPCP*..	J	44.0 /28.6	25 /27	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	C	DNA (5'-D(TPAPAPCPAPAPTPTPGPAPAPTPGP..	A	40.0 /28.9	20 /21	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	F	DNA (5'-D(TPAPAPCPAPAPTPTPGPAPAPTPGP..	D	45.0 /28.6	20 /21	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	I	DNA (5'-D(TPAPAPCPAPAPTPTPGPAPAPTPGP..	G	40.0 /28.6	20 /21	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	L	DNA (5'-D(TPAPAPCPAPAPTPTPGPAPAPTPGP..	J	40.0 /28.6	20 /23	TFAM_HUMAN Transcription factor A, mitochondrial
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
215	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	1qrv	E	NA SODIUM ION[1 atoms]	C	0.0 /44.3	1 /1	HMGD_DROME HIGH MOBILITY GROUP PROTEIN D
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
215	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	4qr9	B	HMGB1_RAT High mobility group protein B1[75 aa]	A	100.0 /100.0	5 /5	HMGB1_RAT High mobility group protein B1
	4qr9	A	HMGB1_RAT High mobility group protein B1[75 aa]	B	100.0 /100.0	5 /5	HMGB1_RAT High mobility group protein B1
	3nm9	E	HMGD_DROME High mobility group protein D[73 aa]	B	75.0 /44.3	4 /4	HMGD_DROME High mobility group protein D
	3nm9	F	HMGD_DROME High mobility group protein D[73 aa]	B	66.7 /44.3	6 /6	HMGD_DROME High mobility group protein D
	3nm9	D	HMGD_DROME High mobility group protein D[73 aa]	C	50.0 /44.3	6 /6	HMGD_DROME High mobility group protein D
	3nm9	C	HMGD_DROME High mobility group protein D[73 aa]	D	57.1 /44.3	7 /7	HMGD_DROME High mobility group protein D
	3nm9	B	HMGD_DROME High mobility group protein D[73 aa]	E	75.0 /44.3	8 /8	HMGD_DROME High mobility group protein D
	3nm9	B	HMGD_DROME High mobility group protein D[73 aa]	F	57.1 /44.3	7 /7	HMGD_DROME High mobility group protein D
	4nnu	B	TFAM_HUMAN Transcription factor A, mitochondrial[192 aa]	A	66.7 /28.6	3 /13	TFAM_HUMAN Transcription factor A, mitochondrial
	4nnu	A	TFAM_HUMAN Transcription factor A, mitochondrial[193 aa]	B	50.0 /28.6	4 /13	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	B	TFAM_HUMAN Transcription factor A, mitochondrial[190 aa]	A	50.0 /28.6	4 /10	TFAM_HUMAN Transcription factor A, mitochondrial
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
215	pdb_id	contact mol		homologue
	pdb_id	a³	description	a⁴	identity[%]⁵	Ncon⁶	description
	1hsm	B	BME BETA-MERCAPTOETHANOL[4 atoms]	A	100.0 /100.0	4 /4	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	1hsn	B	BME BETA-MERCAPTOETHANOL[4 atoms]	A	100.0 /100.0	4 /4	HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1
	5jgh	M	ACT ACETATE ION[4 atoms]	G	50.0 /30.3	4 /4	ABF2_YEAST ARS-binding factor 2, mitochondrial
	5jgh	N	ACT ACETATE ION[4 atoms]	G	100.0 /30.3	1 /1	ABF2_YEAST ARS-binding factor 2, mitochondrial
	3tq6	G	1PE PENTAETHYLENE GLYCOL[16 atoms]	B	50.0 /29.7	2 /6	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	O	1PE PENTAETHYLENE GLYCOL[16 atoms]	A	100.0 /28.9	1 /3	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	Q	1PE PENTAETHYLENE GLYCOL[16 atoms]	D	0.0 /28.6	1 /5	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	R	1PE PENTAETHYLENE GLYCOL[16 atoms]	G	50.0 /28.6	2 /7	TFAM_HUMAN Transcription factor A, mitochondrial
	6hc3	U	1PE PENTAETHYLENE GLYCOL[15 atoms]	J	50.0 /29.7	2 /6	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	H	EDO 1,2-ETHANEDIOL[4 atoms]	A	0.0 /28.6	3 /4	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	G	EDO 1,2-ETHANEDIOL[4 atoms]	B	100.0 /29.7	1 /3	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	K	EDO 1,2-ETHANEDIOL[4 atoms]	B	0.0 /29.7	2 /2	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	L	EDO 1,2-ETHANEDIOL[4 atoms]	B	33.3 /29.7	3 /3	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	O	EDO 1,2-ETHANEDIOL[4 atoms]	B	100.0 /29.7	2 /2	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	M	PEG DI(HYDROXYETHYL)ETHER[7 atoms]	B	0.0 /29.7	2 /2	TFAM_HUMAN Transcription factor A, mitochondrial
	7lbw	N	PEG DI(HYDROXYETHYL)ETHER[7 atoms]	B	50.0 /29.7	2 /5	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	M	GOL GLYCEROL[6 atoms]	A	50.0 /28.9	4 /4	TFAM_HUMAN Transcription factor A, mitochondrial
	6hb4	N	GOL GLYCEROL[6 atoms]	A	50.0 /28.9	2 /2	TFAM_HUMAN Transcription factor A, mitochondrial
	3.a³:asym_id for the contact molecule. 4.a⁴:asym_id for the template homologue. 5.identity[%]⁵:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon⁶:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.

Contact Molecules for Homologous Proteins

Full Bars[0.0 %]

UniProt Feature Tables [P09429(HMGB1_HUMAN)]