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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(HMGB1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [190 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
2 | b | D 1 (D) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(P*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP*GP*AP*CP*TP*GP*TP*TP*AP*A)-3') | 14S 16Y 17A(L) 20V(S) 39S(T) 42S(I) 43K(R) 46S(A) 49W 50K(R) 61E(Q) 64A(Y) 68K(W) 87K 88K 96K 97R 99P(R) 103F(N) 106C(V) 107S(A) 110R(F) 111P(Q) 118P 123G(Q) (identity: 32.0 %/29.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7lbx_A_1 identity=29.7% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85 :**** *** * * *** * ** * * * * * * * *: 7lbx_A_1 8:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 102 SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeb---eebeeebbeeeeeebeeeeeebee--eebeeebbeebeebeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee: Contact : b bb b b bb b bb b b b b queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY: 162 :*** **** ** * ** * * * * * * * * * : 7lbx_A_1 103:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW: 176 SecStr :HHHHHHHTT HHHHHHHHHTTTS SSH----HHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeebeeeeebeebeebeebbbeeeeeebeeeee----eebeeebeeeeeebeeeeeeebeeebeebeebbeeebeeb: Contact : bb bb b b bb bb b b |