[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240501.fasta
835,512 sequences; 240,313,072 total letters
Query= sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens
OX=9606 GN=HMGB1 PE=1 SV=3
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
2yrq_A A High mobility group protein B1 340 6e-120
6cij_G N High mobility group protein B1 247 3e-83
5ze0_E N HMGB1 A-B box 209 4e-68
5ze2_E N HMGB1 A-B box 207 2e-67
5ze1_E N HMGB1 A-B box 207 2e-67
5zdz_E N HMGB1 A-B box 207 2e-67
2rtu_A A High mobility group protein B1 174 3e-55
2ly4_A A High mobility group protein B1 171 3e-54
2gzk_C A Sex-determining region on Y / HMGB1 172 1e-53
1aab_A A HIGH MOBILITY GROUP PROTEIN 167 6e-53
1hsm_A A HIGH MOBILITY GROUP PROTEIN 1 164 2e-51
1hsn_A A HIGH MOBILITY GROUP PROTEIN 1 164 2e-51
1nhn_A A HIGH MOBILITY GROUP PROTEIN 1 164 2e-51
1nhm_A A HIGH MOBILITY GROUP PROTEIN 1 164 2e-51
1hmf_A A HIGH MOBILITY GROUP PROTEIN FRAGMENT-B 160 3e-50
1hme_A A HIGH MOBILITY GROUP PROTEIN FRAGMENT-B 160 3e-50
8i9m_A A High mobility group protein B1 158 4e-49
4qr9_A A High mobility group protein B1 152 8e-47
4qr9_B B High mobility group protein B1 152 8e-47
6cim_E N High mobility group protein B1 152 6e-46
6cik_E N High mobility group protein B1 152 6e-46
1ckt_C A HIGH MOBILITY GROUP 1 PROTEIN 147 6e-45
1j3x_A A High mobility group protein 2 144 8e-44
6cg0_K N High mobility group protein B1 144 3e-43
1j3c_A A High mobility group protein 2 143 3e-43
1j3d_A A High mobility group protein 2 141 2e-42
2yqi_A A High mobility group protein B3 124 7e-36
6oem_J H High mobility group protein B1 117 1e-32
6oen_J H High mobility group protein B1 117 3e-32
2eqz_A A High mobility group protein B3 113 2e-31
6oeo_I N High mobility group protein B1 115 2e-31
6cil_E N High mobility group protein B1 97.1 4e-24
6oem_I N High mobility group protein B1 82.4 8e-19
6oer_I H High mobility group protein B1 82.4 1e-18
6oen_I N High mobility group protein B1 82.4 1e-18
1j5n_C A Nonhistone chromosomal protein 6A 67.4 1e-13
1cg7_A A PROTEIN (NON HISTONE PROTEIN 6 A) 67.4 1e-13
1lwm_A A NONHISTONE CHROMOSOMAL PROTEIN 6A 67.4 1e-13
6l34_A A FACT complex subunit SSRP1 60.8 3e-11
1hma_A A HMG-D 60.5 4e-11
1qrv_C A HIGH MOBILITY GROUP PROTEIN D 60.5 4e-11
1e7j_A A HIGH MOBILITY GROUP PROTEIN D 60.5 4e-11
2co9_A A thymus high mobility group box protein TOX 61.2 4e-11
3nm9_D J High mobility group protein D 58.9 1e-10
3nm9_F P High mobility group protein D 58.9 1e-10
3nm9_C G High mobility group protein D 58.9 1e-10
3nm9_B D High mobility group protein D 58.9 1e-10
3nm9_E M High mobility group protein D 58.9 1e-10
3nm9_A A High mobility group protein D 58.9 1e-10
1qrv_D B HIGH MOBILITY GROUP PROTEIN D 58.2 3e-10
2mrc_A A High mobility group protein 56.2 2e-09
2lhj_A A High mobility group protein homolog NHP1 55.5 5e-09
1wxl_A A Single-strand recognition protein 54.7 5e-09
5vwe_A A FACT complex subunit SSRP1 54.3 7e-09
5jh0_D D ARS-binding factor 2, mitochondrial 51.6 4e-07
5jh0_A A ARS-binding factor 2, mitochondrial 51.6 5e-07
5jgh_G G ARS-binding factor 2, mitochondrial 51.6 5e-07
5jgh_A A ARS-binding factor 2, mitochondrial 51.6 5e-07
5jgh_J J ARS-binding factor 2, mitochondrial 51.6 5e-07
5jgh_D D ARS-binding factor 2, mitochondrial 51.2 5e-07
1wgf_A A Upstream Binding Factor 1 48.1 2e-06
2crj_A A SWI/SNF-related matrix-associated actin-dependent regula... 47.0 6e-06
4s2q_C D Transcription factor SOX-9 43.5 7e-05
1wz6_A A HMG-BOX transcription factor BBX 42.7 1e-04
4euw_A A Transcription factor SOX-9 43.1 2e-04
6hb4_A A Transcription factor A, mitochondrial 42.7 8e-04
6erq_D G Transcription factor A, mitochondrial 42.4 0.001
6erq_A C Transcription factor A, mitochondrial 42.4 0.001
6erp_D G Transcription factor A, mitochondrial 42.4 0.001
6erp_A C Transcription factor A, mitochondrial 42.4 0.001
7lbw_A A Transcription factor A, mitochondrial 42.4 0.001
6hb4_G G Transcription factor A, mitochondrial 42.4 0.001
6hb4_J J Transcription factor A, mitochondrial 42.4 0.001
3u2b_C C Transcription factor SOX-4 40.0 0.001
4nnu_B B Transcription factor A, mitochondrial 42.4 0.001
4nnu_A A Transcription factor A, mitochondrial 42.4 0.001
6hb4_D D Transcription factor A, mitochondrial 42.4 0.001
3tq6_A A Transcription factor A, mitochondrial 42.4 0.001
7lbx_A A Transcription factor A, mitochondrial 42.0 0.001
7lbw_B B Transcription factor A, mitochondrial 42.0 0.001
6hc3_J J Transcription factor A, mitochondrial 42.4 0.001
3tq6_B B Transcription factor A, mitochondrial 42.0 0.001
7lbx_B B Transcription factor A, mitochondrial 42.0 0.001
6jrp_D D Protein capicua homolog 40.0 0.002
6jrp_J J Protein capicua homolog 40.0 0.002
6jrp_G G Protein capicua homolog 40.0 0.002
6jrp_A A Protein capicua homolog 40.0 0.002
4nod_G G Transcription factor A, mitochondrial 42.0 0.002
4nod_H H Transcription factor A, mitochondrial 42.0 0.002
4nod_B B Transcription factor A, mitochondrial 42.0 0.002
4nod_A A Transcription factor A, mitochondrial 42.0 0.002
6hc3_A A Transcription factor A, mitochondrial 42.0 0.002
6hc3_D D Transcription factor A, mitochondrial 42.0 0.002
6hc3_G G Transcription factor A, mitochondrial 42.0 0.002
3tmm_A A Transcription factor A, mitochondrial 42.4 0.002
3f27_C D Transcription factor SOX-17 38.9 0.004
6l6y_C D Transcription factor SOX-17 38.9 0.004
6l6y_F F Transcription factor SOX-17 38.9 0.004
2yul_A A Transcription factor SOX-17 38.9 0.004
1hrz_C A HUMAN SRY 38.5 0.004
1hry_C A HUMAN SRY 38.5 0.004
4a3n_A A TRANSCRIPTION FACTOR SOX-17 38.5 0.004
7m5w_A A Protein capicua homolog 40.0 0.006
1i11_A A TRANSCRIPTION FACTOR SOX-5 38.1 0.006
1j47_C A SEX-DETERMINING REGION Y PROTEIN 38.5 0.006
1j46_C A SEX-DETERMINING REGION Y PROTEIN 38.5 0.006
1k99_A A Upstream binding factor 1 38.5 0.007
6t7c_L L Transcription factor SOX-11 38.5 0.007
6t78_B B Transcription factor SOX-11 38.5 0.007
6t7c_K K Transcription factor SOX-11 38.5 0.007
6t7d_K K Transcription factor SOX-11 38.5 0.007
6t7a_K K Transcription factor SOX-11 38.5 0.007
6t78_A A Transcription factor SOX-11 38.5 0.007
2le4_A A Transcription factor SOX-2 37.7 0.009
1gt0_D D TRANSCRIPTION FACTOR SOX-2 37.7 0.010
4y60_A C Transcription factor SOX-18 37.7 0.010
6ht5_C D Transcription factor SOX-2 37.4 0.011
8bx1_A E Transcription factor SOX-2 37.4 0.011
1o4x_D B Transcription factor SOX-2 37.4 0.013
8bx2_A E Transcription factor SOX-2 37.4 0.013
6t7b_K K Transcription factor SOX-2 37.4 0.013
3fgh_A A Transcription factor A, mitochondrial 37.0 0.014
6wx8_B B Transcription factor SOX-2 37.4 0.014
2e6o_A A HMG box-containing protein 1 37.4 0.014
6wx8_D D Transcription factor SOX-2 37.4 0.016
6t90_L L Transcription factor SOX-2 37.0 0.025
6yov_L L Transcription factor SOX-2 37.0 0.025
6edb_B B Sex-determining region Y protein,Cyclic GMP-AMP synthase 38.1 0.049
2cs1_A A PMS1 protein homolog 1 35.4 0.071
7jjk_A A Transcription factor SOX-30 35.0 0.088
7cyu_A A SWI/SNF-related matrix-associated actin-dependent regula... 28.9 9.7
>2yrq_A A High mobility group protein B1
Length=173
Score = 340 bits (873), Expect = 6e-120, Method: Compositional matrix adjust.
Identities = 166/166 (100%), Positives = 166/166 (100%), Gaps = 0/166 (0%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 67
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct 68 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 127
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 166
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG
Sbjct 128 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKG 173
>6cij_G N High mobility group protein B1
Length=163
Score = 247 bits (631), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 133/150 (89%), Positives = 133/150 (89%), Gaps = 0/150 (0%)
Query 9 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK KEKGKFEDMAKADK
Sbjct 9 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXXKEKGKFEDMAKADK 68
Query 69 ARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKK 128
ARYERE KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKK
Sbjct 69 ARYEREXXXXXXXXXXXKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKK 128
Query 129 LGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158
LGEMWNNTAA KQPYEKKAAKLKEKYEKD
Sbjct 129 LGEMWNNTAAXXKQPYEKKAAKLKEKYEKD 158
>5ze0_E N HMGB1 A-B box
Length=163
Score = 209 bits (532), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 105/135 (78%), Positives = 105/135 (78%), Gaps = 0/135 (0%)
Query 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA 69
RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK AKEKGKFEDMAKADKA
Sbjct 10 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKA 69
Query 70 RYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKL 129
RYEREMK RPPSAFFLFCSEYRPKIKGE IGDVAKKL
Sbjct 70 RYEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEXXXXXIGDVAKKL 129
Query 130 GEMWNNTAADDKQPY 144
GEMWNNT DDKQPY
Sbjct 130 GEMWNNTXXDDKQPY 144
>5ze2_E N HMGB1 A-B box
Length=163
Score = 207 bits (527), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 104/134 (78%), Positives = 104/134 (78%), Gaps = 0/134 (0%)
Query 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR 70
GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK AKEKGKFEDMAKADKAR
Sbjct 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKAR 70
Query 71 YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 130
YEREMK RPPSAFFLFCSEYRPKIKGE IGDVAKKLG
Sbjct 71 YEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEXXXXXIGDVAKKLG 130
Query 131 EMWNNTAADDKQPY 144
EMWNNT DDKQPY
Sbjct 131 EMWNNTXXDDKQPY 144
>5ze1_E N HMGB1 A-B box
Length=163
Score = 207 bits (527), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 104/134 (78%), Positives = 104/134 (78%), Gaps = 0/134 (0%)
Query 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR 70
GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK AKEKGKFEDMAKADKAR
Sbjct 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKAR 70
Query 71 YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 130
YEREMK RPPSAFFLFCSEYRPKIKGE IGDVAKKLG
Sbjct 71 YEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEXXXXXIGDVAKKLG 130
Query 131 EMWNNTAADDKQPY 144
EMWNNT DDKQPY
Sbjct 131 EMWNNTXXDDKQPY 144
>5zdz_E N HMGB1 A-B box
Length=163
Score = 207 bits (527), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 104/134 (78%), Positives = 104/134 (78%), Gaps = 0/134 (0%)
Query 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR 70
GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK AKEKGKFEDMAKADKAR
Sbjct 11 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKXXXAKEKGKFEDMAKADKAR 70
Query 71 YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 130
YEREMK RPPSAFFLFCSEYRPKIKGE IGDVAKKLG
Sbjct 71 YEREMKXXXXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEXXXXXIGDVAKKLG 130
Query 131 EMWNNTAADDKQPY 144
EMWNNT DDKQPY
Sbjct 131 EMWNNTXXDDKQPY 144
>2rtu_A A High mobility group protein B1
Length=87
Score = 174 bits (440), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct 4 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 63
Query 61 EDMAKADKARYEREMKTYIPPKGE 84
EDMAKADKARYEREMKTYIPPKGE
Sbjct 64 EDMAKADKARYEREMKTYIPPKGE 87
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKA 148
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 8 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 67
Query 149 AKLKEKYEKDIAAY 162
K +YE+++ Y
Sbjct 68 KADKARYEREMKTY 81
>2ly4_A A High mobility group protein B1
Length=83
Score = 171 bits (433), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct 1 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
Query 62 DMAKADKARYEREMKTYIPPKGE 84
DMAKADKARYEREMKTYIPPKGE
Sbjct 61 DMAKADKARYEREMKTYIPPKGE 83
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKA 148
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 4 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query 149 AKLKEKYEKDIAAY 162
K +YE+++ Y
Sbjct 64 KADKARYEREMKTY 77
>2gzk_C A Sex-determining region on Y / HMGB1
Length=159
Score = 172 bits (435), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 112/149 (75%), Gaps = 0/149 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + + SE SK+ +WK ++ EK F A+ +A + +
Sbjct 11 AFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP 70
Query 77 TYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136
Y KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT
Sbjct 71 NYKYRKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 130
Query 137 AADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
AADDKQPYEKKAAKLKEKYEKDIAAYRAK
Sbjct 131 AADDKQPYEKKAAKLKEKYEKDIAAYRAK 159
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 85 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKA 142
Query 65 KADKARYEREMKTY 78
K +YE+++ Y
Sbjct 143 AKLKEKYEKDIAAY 156
>1aab_A A HIGH MOBILITY GROUP PROTEIN
Length=83
Score = 167 bits (424), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 82/83 (99%), Positives = 82/83 (99%), Gaps = 0/83 (0%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKGDPKKPRGKMSSYAFFVQT REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE
Sbjct 1 GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 60
Query 62 DMAKADKARYEREMKTYIPPKGE 84
DMAKADKARYEREMKTYIPPKGE
Sbjct 61 DMAKADKARYEREMKTYIPPKGE 83
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKA 148
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 63
Query 149 AKLKEKYEKDIAAY 162
K +YE+++ Y
Sbjct 64 KADKARYEREMKTY 77
>1hsm_A A HIGH MOBILITY GROUP PROTEIN 1
Length=79
Score = 164 bits (414), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK
Sbjct 1 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 60
Query 153 EKYEKDIAAYRAKGKPDAA 171
EKYEKDIAAYRAKGKPDAA
Sbjct 61 EKYEKDIAAYRAKGKPDAA 79
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 5/73 (7%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 3 PKRPP---SAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAA 57
Query 66 ADKARYEREMKTY 78
K +YE+++ Y
Sbjct 58 KLKEKYEKDIAAY 70
>1hsn_A A HIGH MOBILITY GROUP PROTEIN 1
Length=79
Score = 164 bits (414), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK
Sbjct 1 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 60
Query 153 EKYEKDIAAYRAKGKPDAA 171
EKYEKDIAAYRAKGKPDAA
Sbjct 61 EKYEKDIAAYRAKGKPDAA 79
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 5/73 (7%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 3 PKRPP---SAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAA 57
Query 66 ADKARYEREMKTY 78
K +YE+++ Y
Sbjct 58 KLKEKYEKDIAAY 70
>1nhn_A A HIGH MOBILITY GROUP PROTEIN 1
Length=81
Score = 164 bits (414), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK
Sbjct 3 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 62
Query 153 EKYEKDIAAYRAKGKPDAA 171
EKYEKDIAAYRAKGKPDAA
Sbjct 63 EKYEKDIAAYRAKGKPDAA 81
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 5/73 (7%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 5 PKRPP---SAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAA 59
Query 66 ADKARYEREMKTY 78
K +YE+++ Y
Sbjct 60 KLKEKYEKDIAAY 72
>1nhm_A A HIGH MOBILITY GROUP PROTEIN 1
Length=81
Score = 164 bits (414), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK
Sbjct 3 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 62
Query 153 EKYEKDIAAYRAKGKPDAA 171
EKYEKDIAAYRAKGKPDAA
Sbjct 63 EKYEKDIAAYRAKGKPDAA 81
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (51%), Gaps = 5/73 (7%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 5 PKRPP---SAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAA 59
Query 66 ADKARYEREMKTY 78
K +YE+++ Y
Sbjct 60 KLKEKYEKDIAAY 72
>1hmf_A A HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
Length=77
Score = 160 bits (406), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
Query 89 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA
Sbjct 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 149 AKLKEKYEKDIAAYRAK 165
AKLKEKYEKDIAAYRAK
Sbjct 61 AKLKEKYEKDIAAYRAK 77
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 65 KADKARYEREMKTY 78
K +YE+++ Y
Sbjct 61 AKLKEKYEKDIAAY 74
>1hme_A A HIGH MOBILITY GROUP PROTEIN FRAGMENT-B
Length=77
Score = 160 bits (406), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%), Gaps = 0/77 (0%)
Query 89 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA
Sbjct 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 149 AKLKEKYEKDIAAYRAK 165
AKLKEKYEKDIAAYRAK
Sbjct 61 AKLKEKYEKDIAAYRAK 77
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 65 KADKARYEREMKTY 78
K +YE+++ Y
Sbjct 61 AKLKEKYEKDIAAY 74
>8i9m_A A High mobility group protein B1
Length=75
Score = 158 bits (399), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%), Gaps = 0/75 (0%)
Query 89 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA
Sbjct 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 149 AKLKEKYEKDIAAYR 163
AKLKEKYEKDIAAYR
Sbjct 61 AKLKEKYEKDIAAYR 75
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 37/74 (50%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ S++ F R + K +HP S+ + +KK E W +A +K +E A
Sbjct 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKA 60
Query 65 KADKARYEREMKTY 78
K +YE+++ Y
Sbjct 61 AKLKEKYEKDIAAY 74
>4qr9_A A High mobility group protein B1
Length=76
Score = 152 bits (383), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD
Sbjct 3 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 62
Query 68 KARYEREMKTYIP 80
KARYEREMKTYIP
Sbjct 63 KARYEREMKTYIP 75
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 2/70 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
P+ S++ F R + K +HP S+ + +KK E W +A +K +E A K
Sbjct 4 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 63
Query 153 EKYEKDIAAY 162
+YE+++ Y
Sbjct 64 ARYEREMKTY 73
>4qr9_B B High mobility group protein B1
Length=76
Score = 152 bits (383), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 73/73 (100%), Positives = 73/73 (100%), Gaps = 0/73 (0%)
Query 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD
Sbjct 3 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 62
Query 68 KARYEREMKTYIP 80
KARYEREMKTYIP
Sbjct 63 KARYEREMKTYIP 75
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 2/70 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSI--GDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
P+ S++ F R + K +HP S+ + +KK E W +A +K +E A K
Sbjct 4 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 63
Query 153 EKYEKDIAAY 162
+YE+++ Y
Sbjct 64 ARYEREMKTY 73
>6cim_E N High mobility group protein B1
Length=163
Score = 152 bits (385), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/141 (64%), Positives = 90/141 (64%), Gaps = 0/141 (0%)
Query 19 FVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
FVQTCREEHKKKHPDASVNFSEFSKKCSER
Sbjct 19 FVQTCREEHKKKHPDASVNFSEFSKKCSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 78
Query 79 IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 138
RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT
Sbjct 79 XXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTXX 138
Query 139 DDKQPYEKKAAKLKEKYEKDI 159
DKQPYEKKAAKLKEKYEKDI
Sbjct 139 XDKQPYEKKAAKLKEKYEKDI 159
>6cik_E N High mobility group protein B1
Length=163
Score = 152 bits (385), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 90/141 (64%), Positives = 90/141 (64%), Gaps = 0/141 (0%)
Query 19 FVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
FVQTCREEHKKKHPDASVNFSEFSKKCSER
Sbjct 19 FVQTCREEHKKKHPDASVNFSEFSKKCSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 78
Query 79 IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA 138
RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT
Sbjct 79 XXXXXXXXXXXXXXXXXXRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTXX 138
Query 139 DDKQPYEKKAAKLKEKYEKDI 159
DKQPYEKKAAKLKEKYEKDI
Sbjct 139 XDKQPYEKKAAKLKEKYEKDI 159
>1ckt_C A HIGH MOBILITY GROUP 1 PROTEIN
Length=71
Score = 147 bits (371), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)
Query 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD
Sbjct 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60
Query 68 KARYEREMKTY 78
KARYEREMKTY
Sbjct 61 KARYEREMKTY 71
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 35/70 (50%), Gaps = 2/70 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIG--DVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
P+ S++ F R + K +HP S+ + +KK E W +A +K +E A K
Sbjct 2 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 61
Query 153 EKYEKDIAAY 162
+YE+++ Y
Sbjct 62 ARYEREMKTY 71
>1j3x_A A High mobility group protein 2
Length=77
Score = 144 bits (364), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 69/77 (90%), Positives = 73/77 (95%), Gaps = 0/77 (0%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
MGKGDP KPRGKMSSYAFFVQT REEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct 1 MGKGDPNKPRGKMSSYAFFVQTSREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query 61 EDMAKADKARYEREMKT 77
EDMAK+DKARY+REMK
Sbjct 61 EDMAKSDKARYDREMKN 77
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (3%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP--GLSIGDVAKKLGEMWNNTAADDKQPYEKKA 148
DPN P+ S++ F R + K +HP ++ + +KK E W +A +K +E A
Sbjct 5 DPNKPRGKMSSYAFFVQTSREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query 149 AKLKEKYEKDI 159
K +Y++++
Sbjct 65 KSDKARYDREM 75
>6cg0_K N High mobility group protein B1
Length=126
Score = 144 bits (364), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 75/124 (60%), Gaps = 0/124 (0%)
Query 15 SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 74
SYAFFVQTCREEHKKK SVNFSEFSKKCSERWK
Sbjct 1 SYAFFVQTCREEHKKKXXXXSVNFSEFSKKCSERWKXXXXXXXXXXXXXXXXXXXXXXXX 60
Query 75 MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 134
KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN
Sbjct 61 XXXXXXXXXXXXXXXXXXXXXKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWN 120
Query 135 NTAA 138
NTAA
Sbjct 121 NTAA 124
>1j3c_A A High mobility group protein 2
Length=79
Score = 143 bits (360), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 71/76 (93%), Gaps = 0/76 (0%)
Query 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
KDPNAPKRPPSAFFLFCSEYRPKIK EHPGLSIGD AKKLGEMW+ +A DKQPYE+KAA
Sbjct 4 KDPNAPKRPPSAFFLFCSEYRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 63
Query 150 KLKEKYEKDIAAYRAK 165
KLKEKYEKDIAAYRAK
Sbjct 64 KLKEKYEKDIAAYRAK 79
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (3%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +
Sbjct 1 MKKKDPNAPKRPPSAFFLFCSEYRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPY 58
Query 61 EDMAKADKARYEREMKTY 78
E A K +YE+++ Y
Sbjct 59 EQKAAKLKEKYEKDIAAY 76
>1j3d_A A High mobility group protein 2
Length=78
Score = 141 bits (355), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 71/76 (93%), Gaps = 0/76 (0%)
Query 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+ +A DKQPYE+KAA
Sbjct 3 KDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 62
Query 150 KLKEKYEKDIAAYRAK 165
KLKEKYEKDIAAYRAK
Sbjct 63 KLKEKYEKDIAAYRAK 78
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (33%), Positives = 39/76 (51%), Gaps = 2/76 (3%)
Query 3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62
K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +E
Sbjct 2 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 59
Query 63 MAKADKARYEREMKTY 78
A K +YE+++ Y
Sbjct 60 KAAKLKEKYEKDIAAY 75
>2yqi_A A High mobility group protein B3
Length=81
Score = 124 bits (311), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 64/74 (86%), Gaps = 0/74 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
NAPKRPPS FFLFCSE+RPKIK +PG+SIGDVAKKLGEMWNN +KQPY KAAKLK
Sbjct 8 NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLK 67
Query 153 EKYEKDIAAYRAKG 166
EKYEKD+A Y++KG
Sbjct 68 EKYEKDVADYKSKG 81
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (47%), Gaps = 5/73 (7%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P S + F R + K +P S+ + +KK E W ++ EK + A
Sbjct 10 PKRPP---SGFFLFCSEFRPKIKSTNPGISI--GDVAKKLGEMWNNLNDSEKQPYITKAA 64
Query 66 ADKARYEREMKTY 78
K +YE+++ Y
Sbjct 65 KLKEKYEKDVADY 77
>6oem_J H High mobility group protein B1
Length=141
Score = 117 bits (294), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY
Sbjct 87 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 141
>6oen_J H High mobility group protein B1
Length=163
Score = 117 bits (294), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY
Sbjct 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
>2eqz_A A High mobility group protein B3
Length=86
Score = 113 bits (283), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (91%), Gaps = 0/66 (0%)
Query 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
MS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF++MAKADK RY+
Sbjct 20 MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYD 79
Query 73 REMKTY 78
REMK Y
Sbjct 80 REMKDY 85
>6oeo_I N High mobility group protein B1
Length=163
Score = 115 bits (289), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 54/55 (98%), Positives = 54/55 (98%), Gaps = 0/55 (0%)
Query 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT ADDKQPYEKKAAKLKEKY
Sbjct 101 AFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTXADDKQPYEKKAAKLKEKY 155
>6cil_E N High mobility group protein B1
Length=163
Score = 97.1 bits (240), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/61 (90%), Positives = 55/61 (90%), Gaps = 0/61 (0%)
Query 99 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 158
PSAFFLFCSEYRPKIKGEHPG GDVAKKLGEMWNNT DKQPYEKKAAKLKEKYEKD
Sbjct 99 PSAFFLFCSEYRPKIKGEHPGXXXGDVAKKLGEMWNNTXXXDKQPYEKKAAKLKEKYEKD 158
Query 159 I 159
I
Sbjct 159 I 159
>6oem_I N High mobility group protein B1
Length=141
Score = 82.4 bits (202), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 36/38 (95%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
Query 99 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136
PSAFFLFCSEYRPKIKGEHPG IGDVAKKLGEMWNNT
Sbjct 85 PSAFFLFCSEYRPKIKGEHPGXXIGDVAKKLGEMWNNT 122
>6oer_I H High mobility group protein B1
Length=163
Score = 82.4 bits (202), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 36/38 (95%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
Query 99 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136
PSAFFLFCSEYRPKIKGEHPG IGDVAKKLGEMWNNT
Sbjct 99 PSAFFLFCSEYRPKIKGEHPGXXIGDVAKKLGEMWNNT 136
>6oen_I N High mobility group protein B1
Length=163
Score = 82.4 bits (202), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 36/38 (95%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
Query 99 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136
PSAFFLFCSEYRPKIKGEHPG IGDVAKKLGEMWNNT
Sbjct 99 PSAFFLFCSEYRPKIKGEHPGXXIGDVAKKLGEMWNNT 136
>1j5n_C A Nonhistone chromosomal protein 6A
Length=93
Score = 67.4 bits (163), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 46/74 (62%), Gaps = 0/74 (0%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
DPNAPKR SA+ F +E R ++ E+P ++ G V KKLGE W ++KQPYE KA
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query 151 LKEKYEKDIAAYRA 164
K++YE + Y A
Sbjct 77 DKKRYESEKELYNA 90
Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (38%), Positives = 44/74 (59%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ +S+Y FF R+ + ++PD + F + KK E+WK ++ +EK +E A
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEAKA 74
Query 65 KADKARYEREMKTY 78
+ADK RYE E + Y
Sbjct 75 QADKKRYESEKELY 88
>1cg7_A A PROTEIN (NON HISTONE PROTEIN 6 A)
Length=93
Score = 67.4 bits (163), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 46/74 (62%), Gaps = 0/74 (0%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
DPNAPKR SA+ F +E R ++ E+P ++ G V KKLGE W ++KQPYE KA
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query 151 LKEKYEKDIAAYRA 164
K++YE + Y A
Sbjct 77 DKKRYESEKELYNA 90
Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (38%), Positives = 44/74 (59%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ +S+Y FF R+ + ++PD + F + KK E+WK ++ +EK +E A
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEAKA 74
Query 65 KADKARYEREMKTY 78
+ADK RYE E + Y
Sbjct 75 QADKKRYESEKELY 88
>1lwm_A A NONHISTONE CHROMOSOMAL PROTEIN 6A
Length=93
Score = 67.4 bits (163), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/74 (46%), Positives = 46/74 (62%), Gaps = 0/74 (0%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
DPNAPKR SA+ F +E R ++ E+P ++ G V KKLGE W ++KQPYE KA
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQA 76
Query 151 LKEKYEKDIAAYRA 164
K++YE + Y A
Sbjct 77 DKKRYESEKELYNA 90
Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (38%), Positives = 44/74 (59%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP P+ +S+Y FF R+ + ++PD + F + KK E+WK ++ +EK +E A
Sbjct 17 DPNAPKRALSAYMFFANENRDIVRSENPD--ITFGQVGKKLGEKWKALTPEEKQPYEAKA 74
Query 65 KADKARYEREMKTY 78
+ADK RYE E + Y
Sbjct 75 QADKKRYESEKELY 88
>6l34_A A FACT complex subunit SSRP1
Length=68
Score = 60.8 bits (146), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/67 (42%), Positives = 44/67 (66%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+ +++KA + Y
Sbjct 1 KRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDY 60
Query 156 EKDIAAY 162
EK + Y
Sbjct 61 EKAMKEY 67
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A+ + YE
Sbjct 4 MSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYE 61
Query 73 REMKTY 78
+ MK Y
Sbjct 62 KAMKEY 67
>1hma_A A HMG-D
Length=73
Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+Y ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>1qrv_C A HIGH MOBILITY GROUP PROTEIN D
Length=73
Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+Y ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>1e7j_A A HIGH MOBILITY GROUP PROTEIN D
Length=74
Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 62
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 63 YDRAVKEFEANG 74
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+Y ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 5 PKRP---LSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 55
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 56 AAKAKDDYDRAVKEF 70
>2co9_A A thymus high mobility group box protein TOX
Length=102
Score = 61.2 bits (147), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/74 (42%), Positives = 48/74 (65%), Gaps = 0/74 (0%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
DPN P++P SA+ LF + + IKG++P + G+V+K + MW+ + KQ Y+KK
Sbjct 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEA 73
Query 151 LKEKYEKDIAAYRA 164
K++Y K +AAYRA
Sbjct 74 AKKEYLKQLAAYRA 87
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 2/74 (3%)
Query 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
DP +P+ +S+YA F + + K ++P+A+ F E SK + W + ++K ++
Sbjct 14 DPNEPQKPVSAYALFFRDTQAAIKGQNPNAT--FGEVSKIVASMWDGLGEEQKQVYKKKT 71
Query 65 KADKARYEREMKTY 78
+A K Y +++ Y
Sbjct 72 EAAKKEYLKQLAAY 85
>3nm9_D J High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>3nm9_F P High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>3nm9_C G High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>3nm9_B D High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>3nm9_E M High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>3nm9_A A High mobility group protein D
Length=73
Score = 58.9 bits (141), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (64%), Gaps = 2/72 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDIAAYRAKG 166
Y++ + + A G
Sbjct 62 YDRAVKEFEANG 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 47/75 (63%), Gaps = 11/75 (15%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PK+P +S+YA ++ + RE K+++P + +E +K+ E W+ M K+K ++E AK
Sbjct 4 PKRP---LSAYALWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AK 54
Query 66 ADKAR--YEREMKTY 78
A KA+ Y+R +K +
Sbjct 55 AAKAKDDYDRAVKEF 69
>1qrv_D B HIGH MOBILITY GROUP PROTEIN D
Length=73
Score = 58.2 bits (139), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/65 (45%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ L+ + R IK E+PG+ + +VAK+ GE+W A DK +E KAAK K+
Sbjct 4 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDD 61
Query 155 YEKDI 159
Y++ +
Sbjct 62 YDRAV 66
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (33%), Positives = 45/73 (62%), Gaps = 8/73 (11%)
Query 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
KP+ +S+Y ++ + RE K+++P + +E +K+ E W+ M K+K ++E AKA
Sbjct 3 KPKRPLSAYMLWLNSARESIKRENP--GIKVTEVAKRGGELWRAM--KDKSEWE--AKAA 56
Query 68 KAR--YEREMKTY 78
KA+ Y+R +K +
Sbjct 57 KAKDDYDRAVKEF 69
>2mrc_A A High mobility group protein
Length=92
Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 2/80 (3%)
Query 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQPYEKK 147
KDP APKR SA+ + + R +I E P L+ + V K +GE W + K PYEKK
Sbjct 12 KDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPYEKK 71
Query 148 AAKLKEKYEKDIAAYRAKGK 167
A K +Y K+I YR K +
Sbjct 72 AQLDKVRYSKEIEEYRKKNQ 91
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 0/78 (0%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
M K DP P+ +S+Y F+V+ R E K+ P+ + + ++ K E W +S +K +
Sbjct 9 MKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGQLSPAQKAPY 68
Query 61 EDMAKADKARYEREMKTY 78
E A+ DK RY +E++ Y
Sbjct 69 EKKAQLDKVRYSKEIEEY 86
>2lhj_A A High mobility group protein homolog NHP1
Length=97
Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (63%), Gaps = 2/75 (3%)
Query 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS--IGDVAKKLGEMWNNTAADDKQPYEKK 147
KDPNAPKR S++ F E R +I E+P ++ + + K +G WN + ++K+PYE+
Sbjct 18 KDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERM 77
Query 148 AAKLKEKYEKDIAAY 162
+ + + +YE++ A Y
Sbjct 78 SDEDRVRYEREKAEY 92
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 40/77 (52%), Gaps = 0/77 (0%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
K DP P+ +SSY FF + R E ++P+ + + + K W +S +EK +E
Sbjct 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYE 75
Query 62 DMAKADKARYEREMKTY 78
M+ D+ RYERE Y
Sbjct 76 RMSDEDRVRYEREKAEY 92
>1wxl_A A Single-strand recognition protein
Length=73
Score = 54.7 bits (130), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (62%), Gaps = 2/71 (3%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PKR +AF L+ ++ R IK E+PG+ + ++AKK GEMW DK +E AAK K
Sbjct 2 HMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK 59
Query 153 EKYEKDIAAYR 163
++Y ++ Y+
Sbjct 60 QRYHDEMRNYK 70
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (35%), Positives = 41/72 (57%), Gaps = 4/72 (6%)
Query 9 PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
P+ +++ ++ RE K+++P + +E +KK E WK + K+K K+ED A DK
Sbjct 4 PKRATTAFMLWLNDTRESIKRENP--GIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDK 59
Query 69 ARYEREMKTYIP 80
RY EM+ Y P
Sbjct 60 QRYHDEMRNYKP 71
>5vwe_A A FACT complex subunit SSRP1
Length=69
Score = 54.3 bits (129), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/63 (40%), Positives = 41/63 (65%), Gaps = 0/63 (0%)
Query 100 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 159
SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+ +++KA + YEK +
Sbjct 4 SAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAM 63
Query 160 AAY 162
Y
Sbjct 64 KEY 66
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query 13 MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE 72
MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A+ + YE
Sbjct 3 MSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKAEDARRDYE 60
Query 73 REMKTY 78
+ MK Y
Sbjct 61 KAMKEY 66
>5jh0_D D ARS-binding factor 2, mitochondrial
Length=163
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 0/64 (0%)
Query 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
PKRP SA+FL+ ++R + E+P L +++K GE W N AD K+ Y + KL
Sbjct 22 GPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYS 81
Query 154 KYEK 157
+Y+K
Sbjct 82 EYQK 85
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>5jh0_A A ARS-binding factor 2, mitochondrial
Length=163
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>5jgh_G G ARS-binding factor 2, mitochondrial
Length=163
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>5jgh_A A ARS-binding factor 2, mitochondrial
Length=163
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>5jgh_J J ARS-binding factor 2, mitochondrial
Length=163
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>5jgh_D D ARS-binding factor 2, mitochondrial
Length=163
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 0/64 (0%)
Query 94 APKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKE 153
PKRP SA+FL+ ++R + E+P L +++K GE W N AD K+ Y + KL
Sbjct 22 GPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKEKYISERKKLYS 81
Query 154 KYEK 157
+Y+K
Sbjct 82 EYQK 85
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (47%), Gaps = 23/165 (14%)
Query 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
+ K PK+P S+Y ++Q R + K++P ++ +E SK E+W+ + A K K+
Sbjct 18 LIKQGPKRP---TSAYFLYLQDHRSQFVKENP--TLRPAEISKIAGEKWQNLEADIKEKY 72
Query 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
K + Y++ KK+F + PK+P F + +E R ++ +HP
Sbjct 73 ISERKKLYSEYQK-----------AKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDK 121
Query 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165
S D+ K +G+ W + K Y ++Y+K I Y A+
Sbjct 122 SQLDLMKIIGDKWQSLDQSIKDKY-------IQEYKKAIQEYNAR 159
>1wgf_A A Upstream Binding Factor 1
Length=90
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA F+F E R +++ E P LS ++ + L MWN+ + K Y+ + A LK +
Sbjct 21 PKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQ 80
Query 155 YEK 157
E+
Sbjct 81 SER 83
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/72 (31%), Positives = 40/72 (56%), Gaps = 2/72 (3%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
GKG +KP+ +S+ F + R + +++ P+ S SE ++ + W +S K+K K++
Sbjct 14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSE--SELTRLLARMWNDLSEKKKAKYK 71
Query 62 DMAKADKARYER 73
A KA+ ER
Sbjct 72 AREAALKAQSER 83
>2crj_A A SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily E member 1-related
Length=92
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/71 (34%), Positives = 40/71 (56%), Gaps = 0/71 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK P + + F +E R +I+ HP L ++ K LG W+ +KQ Y +A K K
Sbjct 6 SGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEK 65
Query 153 EKYEKDIAAYR 163
++Y K++ AY+
Sbjct 66 QQYLKELWAYQ 76
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/77 (30%), Positives = 39/77 (51%), Gaps = 5/77 (6%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
G PK P ++ Y F+ RE+ + +HPD + F E +K W + EK ++
Sbjct 4 GSSGPKAP---VTGYVRFLNERREQIRTRHPD--LPFPEITKMLGAEWSKLQPAEKQRYL 58
Query 62 DMAKADKARYEREMKTY 78
D A+ +K +Y +E+ Y
Sbjct 59 DEAEKEKQQYLKELWAY 75
>4s2q_C D Transcription factor SOX-9
Length=76
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ ++P L +++K LG++W +K+P+ ++A +L+ ++
Sbjct 4 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQH 63
Query 156 EKD 158
+KD
Sbjct 64 KKD 66
>1wz6_A A HMG-BOX transcription factor BBX
Length=82
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 0/69 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF LFC +R ++ EHP L K L + W +KQ Y A + K+ +
Sbjct 9 RRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAF 68
Query 156 EKDIAAYRA 164
K YR+
Sbjct 69 MKANPGYRS 77
>4euw_A A Transcription factor SOX-9
Length=106
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ ++P L +++K LG++W +K+P+ ++A +L+ ++
Sbjct 31 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQH 90
Query 156 EKD 158
+KD
Sbjct 91 KKD 93
>6hb4_A A Transcription factor A, mitochondrial
Length=213
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 34/200 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 9 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 63
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 64 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 123
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 124 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 179
Query 165 K----GKPDAAKKGVVKAEK 180
+ G+ D ++ + K K
Sbjct 180 QMIEVGRKDLLRRTIKKQRK 199
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 112 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 162
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 163 AKEDETRYHNEMKSW 177
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 7 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 66
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 67 QVYKEEISRFKEQLTPS 83
>6erq_D G Transcription factor A, mitochondrial
Length=205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 30/180 (17%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D
Sbjct 8 SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDA 62
Query 64 AKADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAF 102
+A+ Y+ E+ + + P K TKKK PKRP SA+
Sbjct 63 YRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY 122
Query 103 FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
++ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 NVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
++PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SSPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>6erq_A C Transcription factor A, mitochondrial
Length=205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 30/180 (17%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D
Sbjct 8 SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDA 62
Query 64 AKADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAF 102
+A+ Y+ E+ + + P K TKKK PKRP SA+
Sbjct 63 YRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY 122
Query 103 FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
++ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 NVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
++PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SSPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>6erp_D G Transcription factor A, mitochondrial
Length=205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 30/180 (17%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D
Sbjct 8 SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDA 62
Query 64 AKADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAF 102
+A+ Y+ E+ + + P K TKKK PKRP SA+
Sbjct 63 YRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY 122
Query 103 FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
++ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 NVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
++PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SSPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>6erp_A C Transcription factor A, mitochondrial
Length=205
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 30/180 (17%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D
Sbjct 8 SSPKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDA 62
Query 64 AKADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAF 102
+A+ Y+ E+ + + P K TKKK PKRP SA+
Sbjct 63 YRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAY 122
Query 103 FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
++ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 NVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 38/77 (49%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
++PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SSPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>7lbw_A A Transcription factor A, mitochondrial
Length=204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 8 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 62
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 63 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 122
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 178
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 179 QMIEVGRKDLLRRTI 193
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 111 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 161
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 162 AKEDETRYHNEMKSW 176
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 6 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 65
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 66 QVYKEEISRFKEQLTPS 82
>6hb4_G G Transcription factor A, mitochondrial
Length=213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 9 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 63
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 64 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 123
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 124 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 179
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 180 QMIEVGRKDLLRRTI 194
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 112 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 162
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 163 AKEDETRYHNEMKSW 177
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 7 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 66
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 67 QVYKEEISRFKEQLTPS 83
>6hb4_J J Transcription factor A, mitochondrial
Length=213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 9 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 63
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 64 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 123
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 124 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 179
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 180 QMIEVGRKDLLRRTI 194
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 112 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 162
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 163 AKEDETRYHNEMKSW 177
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 7 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 66
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 67 QVYKEEISRFKEQLTPS 83
>3u2b_C C Transcription factor SOX-4
Length=79
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W DK P+ ++A +L+ K+
Sbjct 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKH 63
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 64 MADYPDYKYR 73
>4nnu_B B Transcription factor A, mitochondrial
Length=230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 213
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 214 QMIEVGRKDLLRRTI 228
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>4nnu_A A Transcription factor A, mitochondrial
Length=230
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 213
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 214 QMIEVGRKDLLRRTI 228
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>6hb4_D D Transcription factor A, mitochondrial
Length=213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 9 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 63
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 64 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 123
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 124 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 179
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 180 QMIEVGRKDLLRRTI 194
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 112 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 162
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 163 AKEDETRYHNEMKSW 177
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 7 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 66
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 67 QVYKEEISRFKEQLTPS 83
>3tq6_A A Transcription factor A, mitochondrial
Length=214
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 10 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 64
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 65 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 124
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 125 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 180
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 181 QMIEVGRKDLLRRTI 195
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 113 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 163
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 164 AKEDETRYHNEMKSW 178
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>7lbx_A A Transcription factor A, mitochondrial
Length=204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 8 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 62
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 63 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 122
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 176
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 111 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 161
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 162 AKEDETRYHNEMKSW 176
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 6 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 65
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 66 QVYKEEISRFKEQLTPS 82
>7lbw_B B Transcription factor A, mitochondrial
Length=204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 8 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 62
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 63 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 122
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 176
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 111 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 161
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 162 AKEDETRYHNEMKSW 176
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 6 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 65
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 66 QVYKEEISRFKEQLTPS 82
>6hc3_J J Transcription factor A, mitochondrial
Length=224
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 20 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 74
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 75 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 134
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 135 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 188
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 123 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 173
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 174 AKEDETRYHNEMKSW 188
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 18 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 77
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 78 QVYKEEISRFKEQLTPS 94
>3tq6_B B Transcription factor A, mitochondrial
Length=214
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 10 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 64
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 65 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 124
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 125 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 113 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 163
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 164 AKEDETRYHNEMKSW 178
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 8 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 67
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 68 QVYKEEISRFKEQLTPS 84
>7lbx_B B Transcription factor A, mitochondrial
Length=204
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 8 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 62
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 63 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 122
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 123 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 176
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 111 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 161
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 162 AKEDETRYHNEMKSW 176
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 6 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 65
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 66 QVYKEEISRFKEQLTPS 82
>6jrp_D D Protein capicua homolog
Length=88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF +F +R + HP V+K LGE W +KQ Y A ++KE +
Sbjct 5 RRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAH 64
Query 156 EK 157
K
Sbjct 65 FK 66
>6jrp_J J Protein capicua homolog
Length=88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF +F +R + HP V+K LGE W +KQ Y A ++KE +
Sbjct 5 RRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAH 64
Query 156 EK 157
K
Sbjct 65 FK 66
>6jrp_G G Protein capicua homolog
Length=88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF +F +R + HP V+K LGE W +KQ Y A ++KE +
Sbjct 5 RRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAH 64
Query 156 EK 157
K
Sbjct 65 FK 66
>6jrp_A A Protein capicua homolog
Length=88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF +F +R + HP V+K LGE W +KQ Y A ++KE +
Sbjct 5 RRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAH 64
Query 156 EK 157
K
Sbjct 65 FK 66
>4nod_G G Transcription factor A, mitochondrial
Length=230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 211
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>4nod_H H Transcription factor A, mitochondrial
Length=230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 211
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>4nod_B B Transcription factor A, mitochondrial
Length=230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 211
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>4nod_A A Transcription factor A, mitochondrial
Length=230
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 43 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 97
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 98 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 157
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 158 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 211
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 146 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 196
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 197 AKEDETRYHNEMKSW 211
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 41 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 100
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 101 QVYKEEISRFKEQLTPS 117
>6hc3_A A Transcription factor A, mitochondrial
Length=224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 20 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 74
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 75 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 134
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 135 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 188
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 123 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 173
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 174 AKEDETRYHNEMKSW 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 18 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 77
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 78 QVYKEEISRFKEQLTPS 94
>6hc3_D D Transcription factor A, mitochondrial
Length=224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 20 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 74
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 75 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 134
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 135 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 188
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 123 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 173
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 174 AKEDETRYHNEMKSW 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 18 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 77
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 78 QVYKEEISRFKEQLTPS 94
>6hc3_G G Transcription factor A, mitochondrial
Length=224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (25%), Positives = 83/178 (47%), Gaps = 30/178 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 20 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 74
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 75 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 134
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 162
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 135 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 188
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 123 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 173
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 174 AKEDETRYHNEMKSW 188
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 18 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 77
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 78 QVYKEEISRFKEQLTPS 94
>3tmm_A A Transcription factor A, mitochondrial
Length=274
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/195 (24%), Positives = 90/195 (46%), Gaps = 34/195 (17%)
Query 6 PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
PKKP +SSY F + K ++PDA +E ++ ++RW+ + +K ++D +
Sbjct 42 PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYR 96
Query 66 ADKARYEREMKTY---IPP-----------------KGETKKK-FKDPNAPKRPPSAFFL 104
A+ Y+ E+ + + P K TKKK PKRP SA+ +
Sbjct 97 AEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNV 156
Query 105 FCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
+ +E + KG+ P + K + E W N + +K+ Y + A + + +Y ++ ++
Sbjct 157 YVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEE 212
Query 165 K----GKPDAAKKGV 175
+ G+ D ++ +
Sbjct 213 QMIEVGRKDLLRRTI 227
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 145 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 195
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 196 AKEDETRYHNEMKSW 210
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 37/77 (48%), Gaps = 0/77 (0%)
Query 93 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK 152
+ PK+P S++ F E P K ++P ++ +++ + W K+ Y+
Sbjct 40 SCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEW 99
Query 153 EKYEKDIAAYRAKGKPD 169
+ Y+++I+ ++ + P
Sbjct 100 QVYKEEISRFKEQLTPS 116
>3f27_C D Transcription factor SOX-17
Length=83
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF ++ + R ++ ++P L +++K LG+ W +K+P+ ++A +L+ ++
Sbjct 8 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH 67
Query 156 EKDIAAY 162
+D Y
Sbjct 68 MQDHPNY 74
>6l6y_C D Transcription factor SOX-17
Length=83
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF ++ + R ++ ++P L +++K LG+ W +K+P+ ++A +L+ ++
Sbjct 8 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAKRLRVQH 67
Query 156 EKDIAAY 162
+D Y
Sbjct 68 MQDHPNY 74
>6l6y_F F Transcription factor SOX-17
Length=83
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF ++ + R ++ ++P L +++K LG+ W +K+P+ ++A +L+ ++
Sbjct 8 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAKRLRVQH 67
Query 156 EKDIAAY 162
+D Y
Sbjct 68 MQDHPNY 74
>2yul_A A Transcription factor SOX-17
Length=82
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/69 (25%), Positives = 42/69 (61%), Gaps = 0/69 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF ++ + R ++ ++P L +++K LG+ W +K+P+ ++A +L+ ++
Sbjct 9 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH 68
Query 156 EKDIAAYRA 164
+D Y++
Sbjct 69 MQDHPNYKS 77
>1hrz_C A HUMAN SRY
Length=76
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL---- 151
KRP +AF ++ + R K+ E+P + +++K+LG W +K P+ ++A KL
Sbjct 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65
Query 152 KEKY 155
+EKY
Sbjct 66 REKY 69
>1hry_C A HUMAN SRY
Length=76
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL---- 151
KRP +AF ++ + R K+ E+P + +++K+LG W +K P+ ++A KL
Sbjct 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65
Query 152 KEKY 155
+EKY
Sbjct 66 REKY 69
>4a3n_A A TRANSCRIPTION FACTOR SOX-17
Length=71
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/62 (26%), Positives = 38/62 (61%), Gaps = 0/62 (0%)
Query 97 RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE 156
RP +AF ++ + R ++ ++P L +++K LG+ W +K+P+ ++A +L+ ++
Sbjct 5 RPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHM 64
Query 157 KD 158
+D
Sbjct 65 QD 66
>7m5w_A A Protein capicua homolog
Length=186
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 0/62 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF +F +R + HP V+K LGE W +KQ Y A ++KE +
Sbjct 35 RRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAH 94
Query 156 EK 157
K
Sbjct 95 FK 96
>1i11_A A TRANSCRIPTION FACTOR SOX-5
Length=81
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/60 (32%), Positives = 34/60 (57%), Gaps = 0/60 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ + R KI P + +++K LG W +KQPY ++ A+L +++
Sbjct 6 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQH 65
>1j47_C A SEX-DETERMINING REGION Y PROTEIN
Length=85
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL---- 151
KRP +AF ++ + R K+ E+P + +++K+LG W +K P+ ++A KL
Sbjct 6 KRPINAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65
Query 152 KEKY 155
+EKY
Sbjct 66 REKY 69
>1j46_C A SEX-DETERMINING REGION Y PROTEIN
Length=85
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL---- 151
KRP +AF ++ + R K+ E+P + +++K+LG W +K P+ ++A KL
Sbjct 6 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 65
Query 152 KEKY 155
+EKY
Sbjct 66 REKY 69
>1k99_A A Upstream binding factor 1
Length=99
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (30%), Positives = 39/74 (53%), Gaps = 0/74 (0%)
Query 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAA 149
K P+ PK+P + +F F E R K HP +S D+ K L + + K Y +
Sbjct 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQ 65
Query 150 KLKEKYEKDIAAYR 163
+ K+++E+++A +R
Sbjct 66 REKQEFERNLARFR 79
>6t7c_L L Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (56%), Gaps = 0/68 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYR 163
D Y+
Sbjct 81 MADYPDYK 88
>6t78_B B Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 81 MADYPDYKYR 90
>6t7c_K K Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 81 MADYPDYKYR 90
>6t7d_K K Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 81 MADYPDYKYR 90
>6t7a_K K Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 81 MADYPDYKYR 90
>6t78_A A Transcription factor SOX-11
Length=109
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/70 (29%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R KI + P + +++K+LG+ W +K P+ ++A +L+ K+
Sbjct 21 KRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKH 80
Query 156 EKDIAAYRAK 165
D Y+ +
Sbjct 81 MADYPDYKYR 90
>2le4_A A Transcription factor SOX-2
Length=81
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 5 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 64
Query 156 EKD 158
K+
Sbjct 65 MKE 67
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 10 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 69
Query 77 TY 78
Y
Sbjct 70 DY 71
>1gt0_D D TRANSCRIPTION FACTOR SOX-2
Length=80
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 4 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 63
Query 156 EKD 158
K+
Sbjct 64 MKE 66
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 9 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 68
Query 77 TY 78
Y
Sbjct 69 DY 70
>4y60_A C Transcription factor SOX-18
Length=80
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
+RP +AF ++ + R ++ ++P L ++K LG+ W +K+P+ ++A +L+ ++
Sbjct 5 RRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNTAEKRPFVEEAERLRVQH 64
Query 156 EKDIAAY 162
+D Y
Sbjct 65 LRDHPNY 71
>6ht5_C D Transcription factor SOX-2
Length=83
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 7 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 66
Query 156 EKD 158
K+
Sbjct 67 MKE 69
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 12 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 71
Query 77 TY 78
Y
Sbjct 72 DY 73
>8bx1_A E Transcription factor SOX-2
Length=83
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 7 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 66
Query 156 EKD 158
K+
Sbjct 67 MKE 69
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 12 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 71
Query 77 TY 78
Y
Sbjct 72 DY 73
>1o4x_D B Transcription factor SOX-2
Length=88
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 9 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 68
Query 156 EKD 158
K+
Sbjct 69 MKE 71
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 14 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 73
Query 77 TY 78
Y
Sbjct 74 DY 75
>8bx2_A E Transcription factor SOX-2
Length=83
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 7 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 66
Query 156 EKD 158
K+
Sbjct 67 MKE 69
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 12 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 71
Query 77 TY 78
Y
Sbjct 72 DY 73
>6t7b_K K Transcription factor SOX-2
Length=89
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 10 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 69
Query 156 EKD 158
K+
Sbjct 70 MKE 72
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 15 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 74
Query 77 TY 78
Y
Sbjct 75 DY 76
>3fgh_A A Transcription factor A, mitochondrial
Length=67
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/75 (35%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query 4 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 63
G PK+PR S+Y +V +E K P + K E WK +S EK +
Sbjct 1 GKPKRPR---SAYNVYVAERFQEAKGDSPQEKL------KTVKENWKNLSDSEKELYIQH 51
Query 64 AKADKARYEREMKTY 78
AK D+ RY EMK++
Sbjct 52 AKEDETRYHNEMKSW 66
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (6%)
Query 95 PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEK 154
PKRP SA+ ++ +E + KG+ P + K + E W N + +K+ Y + A + + +
Sbjct 3 PKRPRSAYNVYVAERFQEAKGDSPQEKL----KTVKENWKNLSDSEKELYIQHAKEDETR 58
Query 155 YEKDIAAY 162
Y ++ ++
Sbjct 59 YHNEMKSW 66
>6wx8_B B Transcription factor SOX-2
Length=90
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 5 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 64
Query 156 EKD 158
K+
Sbjct 65 MKE 67
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/58 (33%), Positives = 29/58 (50%), Gaps = 0/58 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 74
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 10 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE 67
>2e6o_A A HMG box-containing protein 1
Length=87
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/63 (32%), Positives = 32/63 (51%), Gaps = 0/63 (0%)
Query 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
PN KRP +AF LF +YR + +PG ++ LG+ W ++++ Y +A
Sbjct 14 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKA 73
Query 151 LKE 153
L E
Sbjct 74 LAE 76
>6wx8_D D Transcription factor SOX-2
Length=90
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 5 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 64
Query 156 EKD 158
K+
Sbjct 65 MKE 67
>6t90_L L Transcription factor SOX-2
Length=105
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 29 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 88
Query 156 EKD 158
K+
Sbjct 89 MKE 91
>6yov_L L Transcription factor SOX-2
Length=105
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/63 (29%), Positives = 37/63 (59%), Gaps = 0/63 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ R K+ E+P + +++K+LG W + +K+P+ +A +L+ +
Sbjct 29 KRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALH 88
Query 156 EKD 158
K+
Sbjct 89 MKE 91
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 0/62 (0%)
Query 17 AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 76
AF V + + K + ++ SE SK+ WK +S EK F D AK +A + +E
Sbjct 34 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 93
Query 77 TY 78
Y
Sbjct 94 DY 95
>6edb_B B Sex-determining region Y protein,Cyclic GMP-AMP synthase
Length=455
Score = 38.1 bits (87), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/64 (33%), Positives = 37/64 (58%), Gaps = 4/64 (6%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKL---- 151
KRP +AF ++ + R K+ E+P + +++K+LG W +K P+ ++A KL
Sbjct 7 KRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMH 66
Query 152 KEKY 155
+EKY
Sbjct 67 REKY 70
>2cs1_A A PMS1 protein homolog 1
Length=92
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (8%)
Query 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
G KKP MS+ A FVQ R + ++P S+ + + + E WKT+S +EK K+E
Sbjct 4 GSSGIKKP---MSASALFVQDHRPQFLIENPKTSLE--DATLQIEELWKTLSEEEKLKYE 58
Query 62 DMAKADKARYEREMKTYIPPKGETKKKFKD 91
+ A D RY +MK I + E++ KD
Sbjct 59 EKATKDLERYNSQMKRAI--EQESQMSLKD 86
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (58%), Gaps = 0/64 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
K+P SA LF ++RP+ E+P S+ D ++ E+W + ++K YE+KA K E+Y
Sbjct 9 KKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERY 68
Query 156 EKDI 159
+
Sbjct 69 NSQM 72
>7jjk_A A Transcription factor SOX-30
Length=90
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 40/67 (60%), Gaps = 0/67 (0%)
Query 96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 155
KRP +AF ++ +RP + +P + +++ +LG WN + + K+PY +A K+KEK+
Sbjct 5 KRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQKIKEKH 64
Query 156 EKDIAAY 162
++ +
Sbjct 65 REEFPGW 71
>7cyu_A A SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily E member 1
Length=71
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/48 (23%), Positives = 25/48 (52%), Gaps = 0/48 (0%)
Query 97 RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY 144
+P + + + ++K +P L + ++ K +G MW + ++KQ Y
Sbjct 5 KPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEY 52
Lambda K H a alpha
0.304 0.126 0.357 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 14881822032
Database: unitmol_20240501.fasta
Posted date: May 2, 2024 10:24 AM
Number of letters in database: 240,313,072
Number of sequences in database: 835,512
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40