Protein Model on 3tq6_A_1_D_1
(TEMPLATE: 
3tq6
)Protein Model on 3tq6_A_1_D_1
(TEMPLATE: 3tq6
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(HMGB1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [194 aa] | Transcription factor A, mitochondrial :TFAM_HUMAN | |
| 2 | b | D 1 (D) | polymer(polydeoxyribonucleotide) [22 base] | DNA (5'-D(*GP*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP*GP*AP*CP*TP*GP*TP*TP*A)-3') | 14S 16Y 17A(L) 20V(S) 39S(T) 42S(I) 43K(R) 46S(A) 49W 50K(R) 64A(Y) 84E(M) 85T 86K 88K 96K 97R 99P(R) 103F(N) 106C(V) 107S(A) 110R(F) 118P 123G(Q) 126A(L) (identity: 36.0 %/28.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3tq6_A_1 identity=28.6% |
queryA 6:PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY---IPP-----------------KGET: 85
:**** *** * * *** * ** * * * * * * * *:
3tq6_A_1 10:PKKP---VSSYLRFSKEQLPIFKAQNPDAKT--TELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMT: 104
SecStr : --- HHHHHHHHHHHHHHHH TTS H--HHHHHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH:
ExpBur :eeee---eebeeebbeebeeebeeeeeeeee--eebeeebbeebeeeeeeebeeeeeeeeeeeeebeeebeebeeebeeeeeeebeeeeeeeeeeeeeee:
Contact : b bb b b bb b bb b bb bb
queryA 86:KKK-FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK----GKPDAAKKGV: 175
:*** **** ** * ** * * * * * * * * * * * :
3tq6_A_1 105:KKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTI: 195
SecStr :HHHHHHHTT HHHHHHHHHTTTSS SSH----HHHHHHHHHHHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT GGGS S :
ExpBur :eeeebeeeeebeebeebeebbbeeeeeebeeeee----eebeeebeeebeebeeeeeeebeeebeebeebbeeebeebbeebeeeeeeebeeeee:
Contact :b b bb b b bb b b b b
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[assembly_id:1]
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