Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2624989 | 215 | 80 | P09429(HMGB1_HUMAN) | RecName: Full=High mobility group protein B1;AltName: Full=High mobility group protein 1; Short=HMG-1; |
QUERYSEQ |
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE |
215 | region | name | description |
1-215 | CHAIN | /note="High mobility group protein B1" /id="PRO_0000048526" | |
9-79 | DNA_BIND | /note="HMG box 1" | |
95-163 | DNA_BIND | /note="HMG box 2" | |
1-97 | REGION | /note="Sufficient for interaction with HAVCR2" | |
3-15 | REGION | /note="LPS binding (delipidated)" | |
76-95 | REGION | /note="Disordered" | |
80-96 | REGION | /note="LPS binding (Lipid A)" | |
89-108 | REGION | /note="Cytokine-stimulating activity" | |
150-183 | REGION | /note="Binding to AGER/RAGE" | |
161-215 | REGION | /note="Disordered" | |
76-94 | COMPBIAS | /note="Basic and acidic residues" | |
161-187 | COMPBIAS | /note="Basic and acidic residues" | |
188-215 | COMPBIAS | /note="Acidic residues" | |
1-10 | BINDING | /ligand="heparin" /ligand_id="ChEBI:CHEBI:28304" | |
1-215 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
215 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
2yrq | A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6cij | G | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
5ze0 | E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | ||||
5zdz | E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | ||||
5ze2 | E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | ||||
5ze1 | E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | ||||
2rtu | A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
2ly4 | A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
2gzk | C | 67.1 | Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 | ||||
1aab | A | 98.8 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN | ||||
1hsm | A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | ||||
1hsn | A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | ||||
1nhn | A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | ||||
1nhm | A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | ||||
1hme | A | 100.0 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B | ||||
1hmf | A | 100.0 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B | ||||
8i9m | A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
4qr9 | B | 100.0 | HMGB1_RAT High mobility group protein B1 | ||||
4qr9 | A | 100.0 | HMGB1_RAT High mobility group protein B1 | ||||
6cim | E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6cik | E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
1ckt | C | 100.0 | HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN | ||||
1j3x | A | 89.6 | HMG2_PIG High mobility group protein 2 | ||||
6cg0 | K | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
1j3c | A | 89.5 | HMG2_PIG High mobility group protein 2 | ||||
1j3d | A | 88.2 | HMG2_PIG High mobility group protein 2 | ||||
2yqi | A | 77.0 | HMGB3_HUMAN High mobility group protein B3 | ||||
6oem | J | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6oen | J | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
2eqz | A | 80.3 | HMGB3_HUMAN High mobility group protein B3 | ||||
6oeo | I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6cil | E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6oem | I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
6oer | I | 100.0 | HMGB1_HORSE High mobility group protein B1 | ||||
6oen | I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | ||||
1lwm | A | 45.9 | NHP6A_YEAST NONHISTONE CHROMOSOMAL PROTEIN 6A | ||||
1j5n | C | 45.9 | NHP6A_YEAST Nonhistone chromosomal protein 6A | ||||
1cg7 | A | 45.9 | NHP6A_YEAST PROTEIN (NON HISTONE PROTEIN 6 A) | ||||
6l34 | A | 41.8 | SSRP1_HUMAN FACT complex subunit SSRP1 | ||||
1hma | A | 44.3 | HMGD_DROME HMG-D | ||||
1qrv | C | 44.3 | HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | ||||
1e7j | A | 44.3 | HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | ||||
2co9 | A | 41.9 | Q8R4H0_MOUSE thymus high mobility group box protein TOX | ||||
3nm9 | B | 44.3 | HMGD_DROME High mobility group protein D | ||||
3nm9 | C | 44.3 | HMGD_DROME High mobility group protein D | ||||
3nm9 | F | 44.3 | HMGD_DROME High mobility group protein D | ||||
3nm9 | E | 44.3 | HMGD_DROME High mobility group protein D | ||||
3nm9 | D | 44.3 | HMGD_DROME High mobility group protein D | ||||
3nm9 | A | 44.3 | HMGD_DROME High mobility group protein D | ||||
1qrv | D | 46.0 | HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | ||||
2mrc | A | 42.3 | Q8IB14_PLAF7 High mobility group protein | ||||
2lhj | A | 37.0 | NHP1_BABBO High mobility group protein homolog NHP1 | ||||
1wxl | A | 40.6 | SSRP_DROME Single-strand recognition protein | ||||
5vwe | A | 39.7 | SSRP1_HUMAN FACT complex subunit SSRP1 | ||||
5jh0 | D | 39.1 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
5jgh | A | 30.3 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
5jh0 | A | 30.3 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
5jgh | G | 30.3 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
5jgh | J | 30.3 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
5jgh | D | 39.1 | ABF2_YEAST ARS-binding factor 2, mitochondrial | ||||
1wgf | A | 38.1 | UBF1_MOUSE Upstream Binding Factor 1 | ||||
2crj | A | 33.8 | HM20B_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related | ||||
4s2q | C | 30.2 | SOX9_MOUSE Transcription factor SOX-9 | ||||
1wz6 | A | 33.3 | Q8CDV1_MOUSE HMG-BOX transcription factor BBX | ||||
4euw | A | 30.2 | SOX9_HUMAN Transcription factor SOX-9 | ||||
6hb4 | A | 28.9 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6erq | D | 29.3 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6erp | D | 29.3 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6erp | A | 29.3 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6erq | A | 29.3 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
7lbw | A | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6hb4 | G | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6hb4 | J | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
3u2b | C | 30.0 | SOX4_MOUSE Transcription factor SOX-4 | ||||
4nnu | B | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
4nnu | A | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
6hb4 | D | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
3tq6 | A | 28.6 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
7lbx | A | 29.7 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
7lbw | B | 29.7 | TFAM_HUMAN Transcription factor A, mitochondrial | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
215 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2ly4 | B | P53_HUMAN Cellular tumor antigen p53[47 aa] | A | 100.0 /100.0 |
17 /17 |
HMGB1_HUMAN High mobility group protein B1 | |
6cij | A | RAG1_MOUSE V(D)J recombination-activating protein 1[614 aa] | G | 100.0 /100.0 |
3 /3 |
HMGB1_HUMAN High mobility group protein B1 | |
6cij | B | RAG1_MOUSE V(D)J recombination-activating protein 1[616 aa] | G | 100.0 /100.0 |
1 /1 |
HMGB1_HUMAN High mobility group protein B1 | |
8i9m | B | RAGE_HUMAN Advanced glycosylation end product-specific recept.. | A | 100.0 /100.0 |
14 /14 |
HMGB1_HUMAN High mobility group protein B1 | |
6erp | G | RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa.. | A | 10.0 /29.3 |
10 /11 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erp | H | RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1003 aa.. | D | 11.1 /29.3 |
9 /10 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | G | RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1011 aa.. | A | 28.6 /29.3 |
7 /8 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | H | RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial[1002 aa.. | D | 0.0 /29.3 |
6 /7 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
NUCLEOTIDE | |||||||
215 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1ckt | A | DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP.. | C | 100.0 /100.0 |
9 /9 |
HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN | |
1ckt | B | DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*.. | C | 100.0 /100.0 |
10 /10 |
HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN | |
4qr9 | C | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
11 /11 |
HMGB1_RAT High mobility group protein B1 | |
4qr9 | D | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
10 /11 |
HMGB1_RAT High mobility group protein B1 | |
4qr9 | F | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
2 /4 |
HMGB1_RAT High mobility group protein B1 | |
4qr9 | C | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | B | 100.0 /100.0 |
10 /11 |
HMGB1_RAT High mobility group protein B1 | |
4qr9 | D | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | B | 100.0 /100.0 |
11 /11 |
HMGB1_RAT High mobility group protein B1 | |
5zdz | I | DNA (39-MER) | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze0 | I | DNA (54-MER) | E | 100.0 /100.0 |
12 /12 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze1 | I | DNA | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box | |
5zdz | K | DNA chain M | E | 100.0 /100.0 |
11 /11 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze0 | K | DNA (39-MER) | E | 100.0 /100.0 |
11 /11 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze1 | K | DNA | E | 100.0 /100.0 |
12 /12 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze2 | H | DNA (40-MER) | E | 100.0 /100.0 |
7 /7 |
HMGB1_MOUSE HMGB1 A-B box | |
5ze2 | J | DNA (40-MER) | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box | |
6cg0 | H | DNA (60-MER) | K | 100.0 /100.0 |
12 /12 |
HMGB1_HUMAN High mobility group protein B1 | |
6cg0 | J | DNA (41-MER) | K | 100.0 /100.0 |
11 /11 |
HMGB1_HUMAN High mobility group protein B1 | |
6cij | K | DNA (41-MER) | G | 100.0 /100.0 |
12 /12 |
HMGB1_HUMAN High mobility group protein B1 | |
6cij | F | DNA (60-MER) | G | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 | |
6cik | H | Nicked 23RSS intermediate reverse strand | E | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 | |
6cik | J | Nicked 23RSS intermediate forward strand | E | 100.0 /100.0 |
6 /6 |
HMGB1_HUMAN High mobility group protein B1 | |
6cil | H | Intact 23RSS substrate reverse strand | E | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 | |
6cim | I | Intact 23RSS substrate reverse strand | E | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 | |
6cim | J | Intact 23RSS substrate forward strand | E | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 | |
6oem | E | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 | |
6oen | E | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 | |
6oem | H | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 | |
6oen | H | DNA (57-MER) | I | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 | |
6oer | H | DNA (57-MER) | I | 100.0 /100.0 |
4 /4 |
HMGB1_HORSE High mobility group protein B1 | |
6oem | F | DNA (46-MER) | J | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 | |
6oen | F | DNA (46-MER) | J | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 | |
6oeo | F | DNA (46-MER) | I | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 | |
6oem | G | DNA (46-MER) | J | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 | |
6oen | G | DNA (46-MER) | J | 100.0 /100.0 |
3 /3 |
HMGB1_HUMAN High mobility group protein B1 | |
6oeo | E | DNA (46-MER) | I | 100.0 /100.0 |
2 /2 |
HMGB1_HUMAN High mobility group protein B1 | |
6oer | G | DNA (57-MER) | I | 100.0 /100.0 |
5 /5 |
HMGB1_HORSE High mobility group protein B1 | |
2gzk | A | 5'-D(*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*GP.. | C | 71.4 /67.1 |
28 /33 |
Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 | |
2gzk | B | 5'-D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP.. | C | 75.0 /67.1 |
24 /26 |
Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 | |
1qrv | A | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | C | 46.7 /44.3 |
15 /16 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
1qrv | B | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | C | 50.0 /44.3 |
8 /8 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
1qrv | A | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | D | 0.0 /46.0 |
3 /3 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
1qrv | B | DNA (5'-D(*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3') | D | 0.0 /46.0 |
1 /1 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
1j5n | A | 5'-D(*GP*GP*GP*GP*TP*GP*AP*TP*TP*GP*TP*TP*CP*AP*G).. | C | 33.3 /45.9 |
12 /18 |
NHP6A_YEAST Nonhistone chromosomal protein 6A | |
1j5n | B | 5'-D(*CP*TP*GP*AP*AP*CP*AP*AP*TP*CP*AP*CP*CP*CP*C).. | C | 61.5 /45.9 |
13 /16 |
NHP6A_YEAST Nonhistone chromosomal protein 6A | |
1e7j | B | DNA (5'-D(*CP*GP*AP*TP*AP*TP*TP*AP*AP*GP*AP*GP*CP*.. | A | 33.3 /44.3 |
6 /6 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
1e7j | C | DNA (5'-D(*GP*GP*CP*TP*CP*AP*AP*TP*AP*TP*CP*G)-3').. | A | 80.0 /44.3 |
5 /5 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
3nm9 | G | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | A | 50.0 /44.3 |
2 /2 |
HMGD_DROME High mobility group protein D | |
3nm9 | H | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | A | 66.7 /44.3 |
3 /3 |
HMGD_DROME High mobility group protein D | |
3nm9 | O | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | A | 60.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | P | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | A | 66.7 /44.3 |
6 /6 |
HMGD_DROME High mobility group protein D | |
3nm9 | I | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | B | 57.1 /44.3 |
7 /7 |
HMGD_DROME High mobility group protein D | |
3nm9 | J | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | B | 60.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | P | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | B | 0.0 /44.3 |
1 /1 |
HMGD_DROME High mobility group protein D | |
3nm9 | I | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | C | 100.0 /44.3 |
4 /4 |
HMGD_DROME High mobility group protein D | |
3nm9 | J | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | C | 60.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | K | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | C | 50.0 /44.3 |
4 /4 |
HMGD_DROME High mobility group protein D | |
3nm9 | L | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | C | 50.0 /44.3 |
4 /4 |
HMGD_DROME High mobility group protein D | |
3nm9 | J | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | D | 100.0 /44.3 |
1 /1 |
HMGD_DROME High mobility group protein D | |
3nm9 | M | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | D | 40.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | O | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | E | 75.0 /44.3 |
8 /8 |
HMGD_DROME High mobility group protein D | |
3nm9 | P | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | E | 60.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | M | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | F | 71.4 /44.3 |
7 /7 |
HMGD_DROME High mobility group protein D | |
3nm9 | N | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | B | 100.0 /44.3 |
4 /4 |
HMGD_DROME High mobility group protein D | |
3nm9 | N | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | D | 40.0 /44.3 |
5 /5 |
HMGD_DROME High mobility group protein D | |
3nm9 | N | DNA 5'-D(*G*GP*CP*GP*AP*TP*AP*TP*CP*GP*C)-3' | F | 50.0 /44.3 |
6 /6 |
HMGD_DROME High mobility group protein D | |
5jh0 | B | DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. | A | 41.7 /30.3 |
12 /16 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jh0 | E | DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. | A | 44.4 /30.3 |
18 /18 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jh0 | B | DNA (5'-D(*AP*AP*TP*AP*AP*TP*AP*AP*AP*TP*TP*AP*TP*.. | D | 50.0 /39.1 |
14 /16 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jh0 | C | DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. | A | 28.6 /30.3 |
7 /10 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jh0 | F | DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. | A | 50.0 /30.3 |
12 /12 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jh0 | C | DNA (5'-D(*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*AP*.. | D | 55.6 /39.1 |
9 /9 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | B | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | A | 50.0 /30.3 |
12 /17 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | E | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | A | 42.9 /30.3 |
14 /14 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | B | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | D | 50.0 /39.1 |
16 /17 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | H | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | G | 46.2 /30.3 |
13 /16 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | K | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | G | 46.2 /30.3 |
13 /13 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | H | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | J | 42.9 /30.3 |
14 /14 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | K | DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*.. | J | 46.2 /30.3 |
13 /14 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | C | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | A | 20.0 /30.3 |
5 /7 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | F | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | A | 45.5 /30.3 |
11 /11 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | C | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | D | 62.5 /39.1 |
8 /8 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | I | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | G | 28.6 /30.3 |
7 /11 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | L | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | G | 25.0 /30.3 |
8 /8 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | I | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | J | 37.5 /30.3 |
8 /8 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | L | DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*.. | J | 25.0 /30.3 |
8 /10 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
4euw | B | DNA (5'-D(*CP*TP*CP*TP*TP*TP*GP*AP*GP*AP*AP*G)-3').. | A | 36.4 /30.2 |
11 /12 |
SOX9_HUMAN Transcription factor SOX-9 | |
4euw | C | DNA (5'-D(*CP*TP*TP*CP*TP*CP*AP*AP*AP*GP*AP*G)-3').. | A | 33.3 /30.2 |
9 /12 |
SOX9_HUMAN Transcription factor SOX-9 | |
4s2q | A | DNA (5'-D(P*AP*GP*GP*CP*TP*TP*TP*GP*TP*TP*CP*TP*CP.. | C | 46.2 /30.2 |
13 /16 |
SOX9_MOUSE Transcription factor SOX-9 | |
4s2q | B | DNA (5'-D(P*AP*GP*GP*AP*GP*AP*AP*CP*AP*AP*AP*GP*CP.. | C | 37.5 /30.2 |
8 /12 |
SOX9_MOUSE Transcription factor SOX-9 | |
3u2b | A | DNA (5'-D(*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*.. | C | 35.7 /30.0 |
14 /14 |
SOX4_MOUSE Transcription factor SOX-4 | |
3u2b | B | DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*.. | C | 27.3 /30.0 |
11 /15 |
SOX4_MOUSE Transcription factor SOX-4 | |
7lbw | C | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | A | 50.0 /28.6 |
16 /18 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | E | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | A | 44.4 /28.6 |
9 /11 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | C | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | B | 44.4 /29.7 |
9 /12 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | E | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | B | 57.1 /29.7 |
14 /17 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | D | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | A | 33.3 /28.6 |
12 /14 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | F | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | A | 33.3 /28.6 |
12 /12 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | D | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | B | 36.4 /29.7 |
11 /11 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | F | DNA (5'-D(P*TP*AP*GP*CP*CP*TP*TP*TP*CP*TP*AP*TP*TP.. | B | 35.3 /29.7 |
17 /19 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbx | C | DNA (5'-D(P*TP*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP.. | A | 41.7 /29.7 |
24 /27 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbx | D | DNA (5'-D(P*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*TP.. | A | 32.0 /29.7 |
25 /26 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erp | B | Non-Template DNA | A | 37.5 /29.3 |
24 /24 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erp | E | Non-Template DNA | D | 32.0 /29.3 |
25 /26 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erp | C | Template DNA | A | 42.9 /29.3 |
21 /24 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erp | F | Template DNA | D | 39.1 /29.3 |
23 /27 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | B | Non-Template DNA | A | 33.3 /29.3 |
24 /24 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | E | Non-Template DNA | D | 31.8 /29.3 |
22 /23 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | C | Template DNA | A | 55.6 /29.3 |
18 /21 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6erq | F | Template DNA | D | 44.4 /29.3 |
27 /31 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3tq6 | C | DNA (5'-D(*TP*AP*AP*CP*AP*GP*TP*CP*AP*CP*CP*CP*CP*.. | A | 28.0 /28.6 |
25 /28 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3tq6 | D | DNA (5'-D(*GP*TP*TP*AP*GP*TP*TP*GP*GP*GP*GP*GP*GP*.. | A | 36.0 /28.6 |
25 /27 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | C | DNA1 | A | 40.0 /28.6 |
25 /30 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | D | DNA1 | B | 29.2 /28.6 |
24 /28 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | E | DNA2 | A | 38.1 /28.6 |
21 /22 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | F | DNA2 | A | 33.3 /28.6 |
3 /3 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | E | DNA2 | B | 33.3 /28.6 |
3 /3 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | F | DNA2 | B | 42.9 /28.6 |
21 /23 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | B | DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. | A | 36.7 /28.9 |
30 /33 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | E | DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. | D | 36.7 /28.6 |
30 /35 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | H | DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. | G | 50.0 /28.6 |
24 /25 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | K | DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*.. | J | 44.0 /28.6 |
25 /27 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | C | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. | A | 40.0 /28.9 |
20 /21 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | F | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. | D | 45.0 /28.6 |
20 /21 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | I | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. | G | 40.0 /28.6 |
20 /21 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | L | DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*.. | J | 40.0 /28.6 |
20 /23 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
215 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1qrv | E |
NA
SODIUM ION[1 atoms] |
C | 0.0 /44.3 |
1 /1 |
HMGD_DROME HIGH MOBILITY GROUP PROTEIN D | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
215 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
4qr9 | B | HMGB1_RAT High mobility group protein B1[75 aa] | A | 100.0 /100.0 |
5 /5 |
HMGB1_RAT High mobility group protein B1 | |
4qr9 | A | HMGB1_RAT High mobility group protein B1[75 aa] | B | 100.0 /100.0 |
5 /5 |
HMGB1_RAT High mobility group protein B1 | |
3nm9 | E | HMGD_DROME High mobility group protein D[73 aa] | B | 75.0 /44.3 |
4 /4 |
HMGD_DROME High mobility group protein D | |
3nm9 | F | HMGD_DROME High mobility group protein D[73 aa] | B | 66.7 /44.3 |
6 /6 |
HMGD_DROME High mobility group protein D | |
3nm9 | D | HMGD_DROME High mobility group protein D[73 aa] | C | 50.0 /44.3 |
6 /6 |
HMGD_DROME High mobility group protein D | |
3nm9 | C | HMGD_DROME High mobility group protein D[73 aa] | D | 57.1 /44.3 |
7 /7 |
HMGD_DROME High mobility group protein D | |
3nm9 | B | HMGD_DROME High mobility group protein D[73 aa] | E | 75.0 /44.3 |
8 /8 |
HMGD_DROME High mobility group protein D | |
3nm9 | B | HMGD_DROME High mobility group protein D[73 aa] | F | 57.1 /44.3 |
7 /7 |
HMGD_DROME High mobility group protein D | |
4nnu | B | TFAM_HUMAN Transcription factor A, mitochondrial[192 aa] | A | 66.7 /28.6 |
3 /13 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
4nnu | A | TFAM_HUMAN Transcription factor A, mitochondrial[193 aa] | B | 50.0 /28.6 |
4 /13 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | B | TFAM_HUMAN Transcription factor A, mitochondrial[190 aa] | A | 50.0 /28.6 |
4 /10 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
215 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
1hsm | B |
BME
BETA-MERCAPTOETHANOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |
1hsn | B |
BME
BETA-MERCAPTOETHANOL[4 atoms] |
A | 100.0 /100.0 |
4 /4 |
HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |
5jgh | M |
ACT
ACETATE ION[4 atoms] |
G | 50.0 /30.3 |
4 /4 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
5jgh | N |
ACT
ACETATE ION[4 atoms] |
G | 100.0 /30.3 |
1 /1 |
ABF2_YEAST ARS-binding factor 2, mitochondrial | |
7lbw | H |
EDO
1,2-ETHANEDIOL[4 atoms] |
A | 0.0 /28.6 |
3 /4 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /29.7 |
1 /3 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | K |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 0.0 /29.7 |
2 /2 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | L |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 33.3 /29.7 |
3 /3 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | O |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /29.7 |
2 /2 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | M |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
B | 0.0 /29.7 |
2 /2 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
7lbw | N |
PEG
DI(HYDROXYETHYL)ETHER[7 atoms] |
B | 50.0 /29.7 |
2 /5 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | M |
GOL
GLYCEROL[6 atoms] |
A | 50.0 /28.9 |
4 /4 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | N |
GOL
GLYCEROL[6 atoms] |
A | 50.0 /28.9 |
2 /2 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | O |
1PE
PENTAETHYLENE GLYCOL[16 atoms] |
A | 100.0 /28.9 |
1 /3 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | Q |
1PE
PENTAETHYLENE GLYCOL[16 atoms] |
D | 0.0 /28.6 |
1 /5 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
6hb4 | R |
1PE
PENTAETHYLENE GLYCOL[16 atoms] |
G | 50.0 /28.6 |
2 /7 |
TFAM_HUMAN Transcription factor A, mitochondrial | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |