Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
2900190 1817 149 P52948(NUP98_HUMAN) RecName: Full=Nuclear pore complex protein Nup98-Nup96 ; EC=3.4.21.- ;Contains: RecName: Full=Nuclear pore complex protein Nup98; AltName: Full=98 kDa nucleoporin; AltName: Full=Nucleoporin Nup98; Short=Nup98;Contains: RecName: Full=Nuclear pore complex protein Nup96; AltName: Full=96 kDa nucleoporin; AltName: Full=Nucleoporin Nup96; Short=Nup96;Flags: Precursor;
QUERYSEQ 
MFNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFGFGTSTGTANTLFGTASTGTSLFSSQNNAFAQNKPTGFGNFGTSTSSGGLFGTTNTTSNPFGSTSGSLFGP
SSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLFGSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTQNTGF
SFGNTSTIGQPSTNTMGLFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGFGAVGSTLFGNNKLTTFGSSTTSAPSFGTTSGGLFGNKPTLTLGTNTNTSNFGFGTNTSGNSIFGSKPAPGTLGTGLGAGFGTALGAGQASLFG
NNQPKIGGPLGTGAFGAPGFNTTTATLGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKL
VLKNLNNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIVALNMRAALRNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDL
AKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTS
TKKLKTAPLPPASQTTPLQMALNGKPAPPPQSQSPEVEQLGRVVELDSDMVDITQEPVLDTMLEESMPEDQEPVSASTHIASSLGINPHVLQIMKASLLTDEEDVDMALDQRFSRLPSKADTSQEICSPRLPISASHSSKTRSLVGGLLQ
SKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVPPPLTSVFTMPSPAPEVPLKTVGTRRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWGPNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEK
LSLRQRKPDEDMKLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLA
QQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYS
DRHYDLNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLI
IRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCSGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDE
LRSLTQSYLRELAVGSL
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P52948(NUP98_HUMAN)]

1817
region name description
1-880 CHAIN /note="Nuclear pore complex protein Nup98" /id="PRO_0000019929"
881-1817 CHAIN /note="Nuclear pore complex protein Nup96" /id="PRO_0000019930"
738-880 DOMAIN /note="Peptidase S59"
1-156 REGION /note="FG repeats 1"
157-213 REGION /note="GLEBS; interaction with RAE1"
214-480 REGION /note="FG repeats 2"
512-535 REGION /note="Disordered"
614-633 REGION /note="Disordered"
662-682 REGION /note="Disordered"
886-937 REGION /note="Disordered"
886-901 COMPBIAS /note="Basic and acidic residues"
902-921 COMPBIAS /note="Polar residues"
881-881 ACT_SITE /note="Nucleophile" ECO:0000269|PubMed:18287282"
1-1817 DISORDER predicted by DISOPRED

MONOMER
1817
pdb_id a1 identity[%]2 description
7r5k NB 100.0 NUP98_HUMAN Nuclear pore complex protein Nup96
2q5y A 100.0 NUP98_HUMAN Nuclear pore complex protein Nup98
7byf F 100.0 Q3TPG3_MOUSE Peptidase S59 domain-containing protein
7q64 CA 100.0 NUP98_HUMAN Nuclear pore complex protein Nup98
8ci8 X 100.0 NUP98_HUMAN Nuclear pore complex protein Nup98 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
1817 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1ko6[2] B NU98_HUMAN Nuclear Pore Complex Protein Nup98[6 aa] A 100.0
/100.0		 11
/11		 NUP98_HUMAN Nuclear Pore Complex Protein Nup98
1ko6[1] B NU98_HUMAN Nuclear Pore Complex Protein Nup98[6 aa] C 100.0
/100.0		 1
/1		 NUP98_HUMAN Nuclear Pore Complex Protein Nup98
2q5y[2] B NUP98_HUMAN Nuclear pore complex protein Nup96[3 aa] A 100.0
/100.0		 11
/11		 NUP98_HUMAN Nuclear pore complex protein Nup98
3mmy[15] A RAE1L_HUMAN mRNA export factor[354 aa] B 100.0
/100.0		 29
/29		 NUP98_HUMAN Nuclear pore complex protein Nup98
7f60[4] B RAE1L_HUMAN mRNA export factor[330 aa] C 100.0
/100.0		 25
/25		 NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96
4owr[1] C MATRX_VSIVS Matrix protein[176 aa] B 100.0
/100.0		 3
/3		 NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96
5a9q[32] E NU107_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP107[660 aa] F 100.0
/100.0		 7
/7		 NUP98_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP96
5a9q[32] G SEC13_HUMAN PROTEIN SEC13 HOMOLOG[285 aa] F 100.0
/100.0		 8
/8		 NUP98_HUMAN NUCLEAR PORE COMPLEX PROTEIN NUP96
7peq[32] D SEC13_HUMAN Protein SEC13 homolog[285 aa] C 100.0
/100.0		 13
/13		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[64] OB SEC13_HUMAN Protein SEC13 homolog[301 aa] KB 100.0
/100.0		 59
/59		 NUP98_HUMAN Nuclear pore complex protein Nup96
7byf[2] D O41931_MHV68 10 protein[399 aa] B 100.0
/100.0		 2
/2		 Q3TPG3_MOUSE Peptidase S59 domain-containing protein
7mni[2] A NUP88_HUMAN Nuclear pore complex protein Nup88[409 aa] B 100.0
/100.0		 27
/27		 NUP98-2_HUMAN Nuclear pore complex protein Nup98
7peq[24] B NU107_HUMAN Nuclear pore complex protein Nup107[678 aa] C 100.0
/100.0		 4
/4		 NUP98_HUMAN Nuclear pore complex protein Nup96
7peq[8] F NUP85_HUMAN Nuclear pore complex protein Nup85[632 aa] C 100.0
/100.0		 1
/1		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[32] WB NUP85_HUMAN Nuclear pore complex protein Nup85[655 aa] LB 100.0
/100.0		 2
/2		 NUP98_HUMAN Nuclear pore complex protein Nup96
7peq[32] H NU160_HUMAN Nuclear pore complex protein Nup160[996 aa] C 100.0
/100.0		 32
/32		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[24] A RBP2_HUMAN E3 SUMO-protein ligase RanBP2[756 aa] KB 100.0
/100.0		 1
/1		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[16] C RBP2_HUMAN E3 SUMO-protein ligase RanBP2[756 aa] KB 100.0
/100.0		 3
/3		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[8] D RBP2_HUMAN E3 SUMO-protein ligase RanBP2[756 aa] LB 100.0
/100.0		 5
/5		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5k[8] B RBP2_HUMAN E3 SUMO-protein ligase RanBP2[756 aa] KB 100.0
/100.0		 7
/7		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5k[8] D RBP2_HUMAN E3 SUMO-protein ligase RanBP2[756 aa] LB 100.0
/100.0		 4
/4		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[64] EC NU160_HUMAN Nuclear pore complex protein Nup160[1399 aa] KB 100.0
/100.0		 30
/30		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[64] GB NU107_HUMAN Nuclear pore complex protein Nup107[782 aa] KB 100.0
/100.0		 22
/22		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[32] HB NU107_HUMAN Nuclear pore complex protein Nup107[782 aa] KB 100.0
/100.0		 4
/4		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[24] U NUP93_HUMAN Nuclear pore complex protein Nup93[726 aa] KB 100.0
/100.0		 15
/15		 NUP98_HUMAN Nuclear pore complex protein Nup96
7r5j[8] V NUP93_HUMAN Nuclear pore complex protein Nup93[726 aa] MB 100.0
/100.0		 4
/4		 NUP98_HUMAN Nuclear pore complex protein Nup96
7vpg[2] K NS6_SARS ORF6 protein[10 aa] F 100.0
/100.0		 1
/1		 NUP98_HUMAN Isoform 3 of Nuclear pore complex protein Nup98-Nu..
7vph[1] L NS6_SARS2 ORF6 protein[9 aa] B 100.0
/100.0		 1
/1		 NUP98_HUMAN Isoform 3 of Nuclear pore complex protein Nup98-Nu..
3tkn[3] A NUP82_YEAST Nucleoporin NUP82[451 aa] C 95.2
/98.0		 21
/21		 Q6PFD9_MOUSE Nucleoporin 98
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
1817 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1ko6[1] C NUP98_HUMAN Nuclear Pore Complex Protein Nup98[148 aa] A 100.0
/100.0		 12
/12		 NUP98_HUMAN Nuclear Pore Complex Protein Nup98
1ko6[1] A NUP98_HUMAN Nuclear Pore Complex Protein Nup98[152 aa] C 100.0
/100.0		 16
/16		 NUP98_HUMAN Nuclear Pore Complex Protein Nup98
7peq[8] L NUP98_HUMAN Nuclear pore complex protein Nup96[543 aa] C 100.0
/100.0		 1
/1		 NUP98_HUMAN Nuclear pore complex protein Nup96
7peq[8] C NUP98_HUMAN Nuclear pore complex protein Nup96[543 aa] L 100.0
/100.0		 3
/3		 NUP98_HUMAN Nuclear pore complex protein Nup96
7q64[576] G NUP98_HUMAN Nuclear pore complex protein Nup98[34 aa] A 100.0
/100.0		 2
/2		 NUP98_HUMAN Nuclear pore complex protein Nup98
7q66[21] B NUP98_HUMAN Nuclear pore complex protein Nup98[25 aa] A 100.0
/100.0		 6
/6		 NUP98_HUMAN Nuclear pore complex protein Nup98
7q66[20] D NUP98_HUMAN Nuclear pore complex protein Nup98[25 aa] B 100.0
/100.0		 25
/25		 NUP98_HUMAN Nuclear pore complex protein Nup98
7q66[19] B NUP98_HUMAN Nuclear pore complex protein Nup98[25 aa] C 100.0
/100.0		 1
/1		 NUP98_HUMAN Nuclear pore complex protein Nup98
8ci8[9] A NUP98_HUMAN Nuclear pore complex protein Nup98[10 aa] B 100.0
/100.0		 6
/6		 NUP98_HUMAN Nuclear pore complex protein Nup98
8ci8[84] C NUP98_HUMAN Nuclear pore complex protein Nup98[26 aa] B 100.0
/100.0		 13
/13		 NUP98_HUMAN Nuclear pore complex protein Nup98
8ci8[13] E NUP98_HUMAN Nuclear pore complex protein Nup98[10 aa] D 100.0
/100.0		 9
/9		 NUP98_HUMAN Nuclear pore complex protein Nup98
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.