[pdbjlvh2]Protein Model on 7peq_C_1_D

Protein Model on 7peq_C_1_D_1 (TEMPLATE: 7peq )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(NUP98_HUMAN)	C 1 (AE)	polymer(polypeptide(L)) [543 aa]	Nuclear pore complex protein Nup96 :NUP98_HUMAN
2	b		D 1 (AF)	polymer(polypeptide(L)) [285 aa]	Protein SEC13 homolog :SEC13_HUMAN	1514S 1577I 1587T 1588R 1622V 1626M 1627E 1656S 1733I 1734Q 1735C 1736Y 1739K (identity: 100.0 %/92.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7peq_C_1 identity=92.0%

queryA      1213:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC:1312
                :****************************************************************************************************:
7peq_C_1     333:KLYQTPLELKLKHSTVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHLKELDSQLNEPREYIQILERRRAFSRWLSC: 432
SecStr          :   HHHHHHHHTTEEEEESSS EEEEEE    STT STTSSTT SSSSSTTTTSHHHHHHHHHHHHHSS    SS  S  SS  HHHHHHHHHHHHHHHH:    
ExpBur          :eeeeeeeeebeeeeeeeeeeebbeeeeeeeeeeeebbeebeeeeeeeeeeeeebeeeeeebeeebeeeeeeeeeeeeeeeeeeeebeeebeeeeeeebbe:    

queryA      1313:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE:1412
                :****************************************************************************************************:
7peq_C_1     433:TATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIFALLAGKPVWQLSE: 532
SecStr          :HHHHHHTTHHHHHTTT TTHHHHHHGGGS HHHHHHHHHHTT SHHHHHHTT S  STHHHHHHHHHHHHHSTTTTTT  HHHHHHHHHTTT SSSS GG:    
ExpBur          :eeeeeeeeeeeebeeeeeebebeebeeeebeeebeebbeeeeeeeeeeeeeeeeeeeeebeebeeeeeebeeeeeeeeeeebeeeeebeeeebeeeeeee:    

queryA      1413:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEP:1512
                :*******************************************                               **************************:
7peq_C_1     533:KKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLRDVCFHLLKLYSDRHYDLNQLLEP: 632
SecStr          :G  GGGTTTS HHHHHHHHHSSS TTTS HHHHHHHHHHSS  ------------------------------- SS HHHHHHHHTSTTSS HHHHHHH:    
ExpBur          :beeeeeeeeeeeebeebebeebbeeeeeeeeeeebebeeeeee-------------------------------eeeeeebeeeeeebebeeebeeeeee:    

queryA      1513:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP:1612
                :****************************************************************************************************:
7peq_C_1     633:RSITADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHIDNSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVP: 732
SecStr          :HHTT   S HHHHHHHHHHHHTTT S   HHHHHHHHHHHHHHHHHHT SHHHHHHHHS S HHHHHHHHHHHHHH  STT  SSS  SSSSSSGGGT  :    
ExpBur          :eeeeeeeeeebbebbebeebeeeeeeeeeeeeeeebbeebbeebeeeebbebbeebbbeeeeeeebeeeeeeebeeebeebbeeeeeebeeeeeeeebee:    
Contact         : b                                                              b         bb                        

queryA      1613:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS:1712
                :****************************************************************************************************:
7peq_C_1     733:AKWIHEAKAVRAHMESDKHLEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIRVIEMLRHIQQVDCS: 832
SecStr          :HHHHHHHHHHHHHHHS HHHHSHHHHTTT  SS HHHHHHHHGGG   TT HHHHHHHHHHHHHHHHHTT  S  SHHHHHHHHHHHHHHHHH SS  S :    
ExpBur          :eeeebebbbebeeeeeebeebbeeebeeebbeeeeeeeeebebeeeeeeeeeeeeeeebeeeeeebeeeeeeeeeeeeebeeebbeeeeebeeeeeeeee:    
Contact         :         b   bb                            b                                                        

queryA      1713:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR:1802
                :******************************************                ********************************:
7peq_C_1     833:GNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDMAKRVANLXXXXXXXXXXXXXXXXSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELR: 922
SecStr          : SHHHHHHHHHHHHHTHHHHT    SHHHHHHHHHHHTTTTT----------------S        TTSSSTTTTS S    HHHHH  :    
ExpBur          :eeeeeebeebbeeeeebeeeeeeeeeeebebbeebeeebeee----------------eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee:    
Contact         :                    bbbb  b

Protein Model on 7peq_C_1_D_1 (TEMPLATE: 7peq )

Input Residue Numbers for Focused Sites