Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
2692367 631 7 P17405(ASM_HUMAN) RecName: Full=Sphingomyelin phosphodiesterase ; EC=3.1.4.12 ; EC=3.1.4.3 ;AltName: Full=Acid sphingomyelinase ; Short=aSMase;Contains: RecName: Full=Sphingomyelin phosphodiesterase, processed form ;Flags: Precursor;
QUERYSEQ
MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLVLALALALALALALSDSRVLWAPAEAHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRR
SVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHDVWHQTRQDQLRALTT
VTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYEN
TLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLS
ARADSPALCRHLMPDGSLPEAQSLWPRPLFC
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [P17405(ASM_HUMAN)]

631
region name description
1-46 SIGNAL
47-631 CHAIN /note="Sphingomyelin phosphodiesterase" /id="PRO_0000002323"
254-631 CHAIN /note="Sphingomyelin phosphodiesterase, processed form" /id="PRO_0000456684"
87-171 DOMAIN /note="Saposin B-type"
1-23 REGION /note="Disordered"
208-208 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
210-210 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
280-280 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
280-280 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
320-320 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
427-427 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
459-459 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="2" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
461-461 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="1" ECO:0007744|PDB:5I81, ECO:0007744|PDB:5I85, ECO:0007744|PDB:5I8R, ECO:0007744|PDB:5JG8"
1-196 DISORDER predicted by DISOPRED

MONOMER
631
pdb_id a1 identity[%]2 description
5jg8 B 100.0 ASM_HUMAN Sphingomyelin phosphodiesterase
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
COMPOUND
631 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5i81[11] E NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[2] E NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[9] F NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[9] H NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[3] J NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
6
/6
ASM_HUMAN Sphingomyelin phosphodiesterase
5i8r[1] BA NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
C 100.0
/100.0
1
/1
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[2] N NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] O NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[2] S NAG
2-acetamido-2-deoxy-beta-D-glucopyranose[14 atoms]..
A 100.0
/100.0
1
/1
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] U PC
PHOSPHOCHOLINE[11 atoms]
A 100.0
/100.0
9
/9
ASM_HUMAN Sphingomyelin phosphodiesterase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
631 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5i81[18] L ZN
ZINC ION[1 atoms]
A 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[4] J ZN
ZINC ION[1 atoms]
A 100.0
/100.0
4
/4
ASM_HUMAN Sphingomyelin phosphodiesterase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
OTHERPOLY
631 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5i81[4] B 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[5] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
7
/7
ASM_HUMAN Sphingomyelin phosphodiesterase
5i8r[2] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] C 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[2] D 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] H 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-a.. B 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[2] C beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-bet.. A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] B beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-bet.. A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i8r[1] H beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-bet.. B 100.0
/100.0
4
/4
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[2] D beta-D-mannopyranose-(1-3)-alpha-D-mannopyranose A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] C alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-.. A 100.0
/100.0
7
/7
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] E 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-a.. A 100.0
/100.0
4
/4
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] F alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. B 100.0
/100.0
6
/6
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[1] G alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-be.. B 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
631 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5i81[4] A ASM_HUMAN Sphingomyelin phosphodiesterase[528 aa] A 100.0
/100.0
28
/28
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] A ASM_HUMAN Sphingomyelin phosphodiesterase[528 aa] A 100.0
/100.0
9
/9
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] A ASM_HUMAN Sphingomyelin phosphodiesterase[528 aa] A 100.0
/100.0
11
/11
ASM_HUMAN Sphingomyelin phosphodiesterase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
631 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5i81[6] N SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[8] O SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[6] P SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[6] Q SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[6] R SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
5
/5
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[2] S SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[6] T SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
6
/6
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[6] U SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[2] V SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5i81[12] W SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
4
/4
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] P SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] S SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
1
/1
ASM_HUMAN Sphingomyelin phosphodiesterase
5i85[4] T SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
3
/3
ASM_HUMAN Sphingomyelin phosphodiesterase
5jg8[2] L ACT
ACETATE ION[4 atoms]
A 100.0
/100.0
7
/7
ASM_HUMAN Sphingomyelin phosphodiesterase
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.