[pdbjlvh2]Protein Model on 5i85_A_1_D

Protein Model on 5i85_A_1_D_1 (TEMPLATE: 5i85 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1] [assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ASM_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [528 aa]	Sphingomyelin phosphodiesterase :ASM_HUMAN
2	b		D 1 (D)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	520I 522N 524T 525Q 536Q 574F 579G (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5i85_A_1 identity=100.0%

queryA        86:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 185
                :****************************************************************************************************:
5i85_A_1      38:WGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHWDIFSSWNISLPTVPK: 137
SecStr          : GGGHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHTT S HHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH TTT    TT        SS  :    
ExpBur          :eeeeebeebeeebeeebeebeeeeebeeebeeebeebeeeeeeeeebbeeebeebbebebbbebebeebeebbbbeeeeeebbeeebeeebebeeeeeee:    

queryA       186:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 285
                :****************************************************************************************************:
5i85_A_1     138:PPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWTGDIPAHD: 237
SecStr          :          TT  EEEEEEE    B TTB TTS TT SSSS SBTTS    TTS    SS  SSS  B HHHHHHHHHT GGG   SEEEE S  S S :    
ExpBur          :eeeeeeeeeeeebeebebbbbbbbbbbeebeeebbbebebebbbbeebeeeeeeeeebbebbbebebbbbeebbebbbeebeebeebebbbbbbbbbbbb:    

queryA       286:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 385
                :****************************************************************************************************:
5i85_A_1     238:VWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMN: 337
SecStr          :TTS  HHHHHHHHHHHHHHHHHHHTTS EEE   TTSSSSTT    TT  STTSSHHHHHHHHHHSTTTS HHHHHHHHHHS EEEEEETTEEEEE  GG:    
ExpBur          :bbebeeeebeebbeebbebbeeebeebebbbbbbbbbbbbbbbbbbeebeeeebbebbbebbbebbeebbeeebbebbeebbbbbbebbeebbbbbbbbb:    

queryA       386:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 485
                :****************************************************************************************************:
5i85_A_1     338:FCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAP: 437
SecStr          :GT TT GGGGT  SSGGGHHHHHHHHHHHHHHHT EEEEE SS GGGS HHHHHHHHHHHHHTTTTEEEEEE SS S EEEEEE TTTS SEEEEEEE  :    
ExpBur          :bbbeebbbbbbebebbeebbeebbebbbebbeeebebbbbbbbbbbebbebbbebbbebbbbbbebbbbbbbbebbbbbbbbbbbeeebeebbbbbbbbb:    

queryA       486:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 585
                :****************************************************************************************************:
5i85_A_1     438:SATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEP: 537
SecStr          : SS TTT   EEEEEEEE SSTT    EEEEEEEE  HHHHTSTT     EEEEEHHHHHT S  SHHHHHHHHHHHHH HHHHHHHHHHHTTT   SS :    
ExpBur          :bbbbeebbbbbbbbbbbbbeeeebbbbbebbbbbbbebeebeeeeeebebeebbebeeebebeebbbebbeebbeebeeeeebbeebbebbbbeeeeeee:    
Contact         :                                  b b bb          b                                     b    b      

queryA       586:CGTPCRLATLCAQLSARADSPALCRHLM: 613
                :****************************:
5i85_A_1     538:CGTPCRLATLCAQLSARADSPALCRHLM: 565
SecStr          :  HHHHHHHHHHHT  STT GGGGTTT :    
ExpBur          :beeeebbebbbebbebbbebeebbeebe:

Protein Model on 5i85_A_1_D_1 (TEMPLATE: 5i85 )

Input Residue Numbers for Focused Sites