Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2624989 | 215 | 35 | P09429(HMGB1_HUMAN) | RecName: Full=High mobility group protein B1;AltName: Full=High mobility group protein 1; Short=HMG-1; |
QUERYSEQ |
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE |
215 |
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region | name | description |
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1-215 | CHAIN | /note="High mobility group protein B1" /id="PRO_0000048526" |
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9-79 | DNA_BIND | /note="HMG box 1" |
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95-163 | DNA_BIND | /note="HMG box 2" |
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1-97 | REGION | /note="Sufficient for interaction with HAVCR2" |
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3-15 | REGION | /note="LPS binding (delipidated)" |
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76-95 | REGION | /note="Disordered" |
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80-96 | REGION | /note="LPS binding (Lipid A)" |
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89-108 | REGION | /note="Cytokine-stimulating activity" |
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150-183 | REGION | /note="Binding to AGER/RAGE" |
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161-215 | REGION | /note="Disordered" |
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76-94 | COMPBIAS | /note="Basic and acidic residues" |
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161-187 | COMPBIAS | /note="Basic and acidic residues" |
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188-215 | COMPBIAS | /note="Acidic residues" |
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1-10 | BINDING | /ligand="heparin" /ligand_id="ChEBI:CHEBI:28304" |
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1-215 | DISORDER | predicted by DISOPRED |
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215 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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G | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | |||
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E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | |||
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E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | |||
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E | 100.0 | HMGB1_MOUSE HMGB1 A-B box | |||
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A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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C | 67.1 | Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 | |||
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A | 98.8 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN | |||
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A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |||
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A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |||
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A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |||
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A | 100.0 | HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 | |||
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A | 100.0 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B | |||
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A | 100.0 | HMG1_RAT HIGH MOBILITY GROUP PROTEIN FRAGMENT-B | |||
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A | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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A | 100.0 | HMGB1_RAT High mobility group protein B1 | |||
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B | 100.0 | HMGB1_RAT High mobility group protein B1 | |||
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E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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C | 100.0 | HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN | |||
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A | 89.6 | HMG2_PIG High mobility group protein 2 | |||
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K | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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A | 89.5 | HMG2_PIG High mobility group protein 2 | |||
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A | 88.2 | HMG2_PIG High mobility group protein 2 | |||
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A | 77.0 | HMGB3_HUMAN High mobility group protein B3 | |||
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J | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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J | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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A | 80.3 | HMGB3_HUMAN High mobility group protein B3 | |||
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I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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E | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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I | 100.0 | HMGB1_HUMAN High mobility group protein B1 | |||
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I | 100.0 | HMGB1_HORSE High mobility group protein B1 | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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215 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B | P53_HUMAN Cellular tumor antigen p53[47 aa] | A | 100.0 /100.0 |
17 /17 |
HMGB1_HUMAN High mobility group protein B1 |
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A | RAG1_MOUSE V(D)J recombination-activating protein 1[614 aa] | G | 100.0 /100.0 |
3 /3 |
HMGB1_HUMAN High mobility group protein B1 |
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B | RAG1_MOUSE V(D)J recombination-activating protein 1[616 aa] | G | 100.0 /100.0 |
1 /1 |
HMGB1_HUMAN High mobility group protein B1 |
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B | RAGE_HUMAN Advanced glycosylation end product-specific recept.. | A | 100.0 /100.0 |
14 /14 |
HMGB1_HUMAN High mobility group protein B1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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215 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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A | DNA (5'-D(*CP*CP*(5IU)P*CP*TP*CP*TP*GP*GP*AP*CP*CP.. | C | 100.0 /100.0 |
9 /9 |
HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN |
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B | DNA (5'-D(*GP*GP*AP*AP*GP*GP*TP*CP*CP*AP*GP*AP*GP*.. | C | 100.0 /100.0 |
10 /10 |
HMG1_RAT HIGH MOBILITY GROUP 1 PROTEIN |
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C | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
11 /11 |
HMGB1_RAT High mobility group protein B1 |
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D | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
10 /11 |
HMGB1_RAT High mobility group protein B1 |
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F | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | A | 100.0 /100.0 |
2 /4 |
HMGB1_RAT High mobility group protein B1 |
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C | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | B | 100.0 /100.0 |
10 /11 |
HMGB1_RAT High mobility group protein B1 |
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D | DNA (5'-D(*AP*TP*AP*TP*CP*GP*AP*TP*AP*T)-3') | B | 100.0 /100.0 |
11 /11 |
HMGB1_RAT High mobility group protein B1 |
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I | DNA (39-MER) | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box |
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I | DNA (54-MER) | E | 100.0 /100.0 |
12 /12 |
HMGB1_MOUSE HMGB1 A-B box |
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I | DNA | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box |
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K | DNA chain M | E | 100.0 /100.0 |
11 /11 |
HMGB1_MOUSE HMGB1 A-B box |
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K | DNA (39-MER) | E | 100.0 /100.0 |
11 /11 |
HMGB1_MOUSE HMGB1 A-B box |
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K | DNA | E | 100.0 /100.0 |
12 /12 |
HMGB1_MOUSE HMGB1 A-B box |
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H | DNA (40-MER) | E | 100.0 /100.0 |
7 /7 |
HMGB1_MOUSE HMGB1 A-B box |
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J | DNA (40-MER) | E | 100.0 /100.0 |
10 /10 |
HMGB1_MOUSE HMGB1 A-B box |
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H | DNA (60-MER) | K | 100.0 /100.0 |
12 /12 |
HMGB1_HUMAN High mobility group protein B1 |
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J | DNA (41-MER) | K | 100.0 /100.0 |
11 /11 |
HMGB1_HUMAN High mobility group protein B1 |
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K | DNA (41-MER) | G | 100.0 /100.0 |
12 /12 |
HMGB1_HUMAN High mobility group protein B1 |
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F | DNA (60-MER) | G | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 |
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H | Nicked 23RSS intermediate reverse strand | E | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 |
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J | Nicked 23RSS intermediate forward strand | E | 100.0 /100.0 |
6 /6 |
HMGB1_HUMAN High mobility group protein B1 |
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H | Intact 23RSS substrate reverse strand | E | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 |
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I | Intact 23RSS substrate reverse strand | E | 100.0 /100.0 |
10 /10 |
HMGB1_HUMAN High mobility group protein B1 |
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J | Intact 23RSS substrate forward strand | E | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 |
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E | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 |
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E | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 |
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H | DNA (57-MER) | I | 100.0 /100.0 |
7 /7 |
HMGB1_HUMAN High mobility group protein B1 |
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H | DNA (57-MER) | I | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 |
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H | DNA (57-MER) | I | 100.0 /100.0 |
4 /4 |
HMGB1_HORSE High mobility group protein B1 |
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F | DNA (46-MER) | J | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 |
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F | DNA (46-MER) | J | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 |
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F | DNA (46-MER) | I | 100.0 /100.0 |
8 /8 |
HMGB1_HUMAN High mobility group protein B1 |
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G | DNA (46-MER) | J | 100.0 /100.0 |
5 /5 |
HMGB1_HUMAN High mobility group protein B1 |
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G | DNA (46-MER) | J | 100.0 /100.0 |
3 /3 |
HMGB1_HUMAN High mobility group protein B1 |
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E | DNA (46-MER) | I | 100.0 /100.0 |
2 /2 |
HMGB1_HUMAN High mobility group protein B1 |
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G | DNA (57-MER) | I | 100.0 /100.0 |
5 /5 |
HMGB1_HORSE High mobility group protein B1 |
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A | 5'-D(*GP*GP*GP*AP*TP*CP*TP*AP*AP*AP*CP*AP*AP*TP*GP.. | C | 71.4 /67.1 |
28 /33 |
Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 |
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B | 5'-D(*GP*CP*AP*TP*TP*GP*TP*TP*TP*AP*GP*AP*TP*CP*CP.. | C | 75.0 /67.1 |
24 /26 |
Q6J415_HUMAN Q548R9_RAT Sex-determining region on Y / HMGB1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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215 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B | HMGB1_RAT High mobility group protein B1[75 aa] | A | 100.0 /100.0 |
5 /5 |
HMGB1_RAT High mobility group protein B1 |
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A | HMGB1_RAT High mobility group protein B1[75 aa] | B | 100.0 /100.0 |
5 /5 |
HMGB1_RAT High mobility group protein B1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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215 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B |
BME
|
A | 100.0 /100.0 |
4 /4 |
HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 |
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B |
BME
|
A | 100.0 /100.0 |
4 /4 |
HMG1_CRIGR HIGH MOBILITY GROUP PROTEIN 1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |