#WARNING:no index is registered index "YP_009725305.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725305.1.txt".
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Contact Molecules for Homologous Proteins


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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
4052624 113 64 YP_009725305.1()
QUERYSEQ
NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [YP_009725305.1()]

113
region name description
1-8 DISORDER predicted by DISOPRED

MONOMER
113
pdb_id a1 identity[%]2 description
6w4b B 100.0 R1AB_SARS2 Non-structural protein 9
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7cyq[16] A R1AB_SARS2 RNA-directed RNA polymerase[926 aa] I 100.0
/100.0
12
/12
R1AB_SARS2 Non-structural protein 9
7egq[2] G R1AB_SARS2 Non-structural protein 10[131 aa] F 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
7egq[2] H R1AB_SARS2 Proofreading exoribonuclease[523 aa] F 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
7eiz[1] I R1AB_SARS2 Proofreading exoribonuclease[523 aa] E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8dqu[12] A Nanobody[127 aa] C 100.0
/100.0
15
/15
R1AB_SARS2 Non-structural protein 9
2j98[2] B R1A_CVH22 REPLICASE POLYPROTEIN 1AB[102 aa] A 66.7
/43.4
15
/15
R1A_CVH22 REPLICASE POLYPROTEIN 1AB
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
8gwb[1] H RNA (5'-R(P*AP*U)-3') G 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8gwe[1] H RNA (5'-R(P*AP*UP*UP*A)-3') G 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8sqj[1] H SARS-CoV-2 5' UTR E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8sqk[1] H SARS-CoV-2 5' UTR E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7cyq[1] L GDP
GUANOSINE-5'-DIPHOSPHATE[28 atoms]
I 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
7kri[12] E X0Y
1,3-dimethyl-1H-pyrrolo[3,4-d]pyrimidine-2,4(3H,6H..
A 100.0
/100.0
6
/7
R1AB_SARS2 Non-structural protein 9
7n3k[8] I ODN
(1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14..
A 100.0
/100.0
5
/5
R1AB_SARS2 Non-structural protein 9
7n3k[8] J ODN
(1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14..
A 100.0
/100.0
2
/3
R1AB_SARS2 Non-structural protein 9
8gw1[2] T U5P
URIDINE-5'-MONOPHOSPHATE[20 atoms]
I 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8gwf[2] L GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
I 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8gwi[1] L GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms]
I 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8sq9[1] O WSB
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosph..
E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7cyq[1] M MG
MAGNESIUM ION[1 atoms]
I 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
8sq9[1] N MG
MAGNESIUM ION[1 atoms]
E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1qz8[2] A R1AB_CVHSA polyprotein 1ab[111 aa] A 100.0
/97.3
6
/6
R1AB_CVHSA polyprotein 1ab
1qz8[20] B R1AB_CVHSA polyprotein 1ab[110 aa] A 100.0
/97.3
17
/17
R1AB_CVHSA polyprotein 1ab
1uw7[2] A R1AB_CVHSA NSP9[122 aa] A 100.0
/97.3
21
/24
R1AB_CVHSA NSP9
6w9q[16] A R1AB_SARS2 3C-like proteinase peptide, Non-structural protein.. A 100.0
/100.0
20
/24
R1AB_SARS2 3C-like proteinase peptide, Non-structural protein..
7kri[6] B R1AB_SARS2 Non-structural protein 9[127 aa] A 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
7kri[6] C R1AB_SARS2 Non-structural protein 9[123 aa] A 100.0
/100.0
5
/5
R1AB_SARS2 Non-structural protein 9
7kri[6] C R1AB_SARS2 Non-structural protein 9[123 aa] A 100.0
/100.0
15
/18
R1AB_SARS2 Non-structural protein 9
8dqu[12] D R1AB_SARS2 Non-structural protein 9[74 aa] C 100.0
/100.0
26
/26
R1AB_SARS2 Non-structural protein 9
2j97[2] A R1A_CVH22 REPLICASE POLYPROTEIN 1AB[98 aa] A 86.4
/54.9
22
/22
R1A_CVH22 REPLICASE POLYPROTEIN 1AB
5hiy[6] B R1AB_PEDV7 Non-structural protein 9[96 aa] A 44.4
/49.3
9
/10
R1AB_PEDV7 Non-structural protein 9
5c94[2] A R1AB_IBVM Non-structural protein 9[116 aa] A 64.7
/39.6
17
/21
R1AB_IBVM Non-structural protein 9
5ym6[4] B X2G6C4_9NIDO nsp9[99 aa] A 73.7
/38.5
19
/19
X2G6C4_9NIDO nsp9
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
113 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
1qz8[4] C SO4
SULFATE ION[5 atoms]
A 100.0
/97.3
2
/2
R1AB_CVHSA polyprotein 1ab
1qz8[10] C SO4
SULFATE ION[5 atoms]
A 100.0
/97.3
3
/3
R1AB_CVHSA polyprotein 1ab
1qz8[5] E SO4
SULFATE ION[5 atoms]
A 66.7
/97.3
3
/3
R1AB_CVHSA polyprotein 1ab
1qz8[8] F SO4
SULFATE ION[5 atoms]
B 50.0
/97.3
2
/2
R1AB_CVHSA polyprotein 1ab
2j97[4] C SO4
SULFATE ION[5 atoms]
A 40.0
/54.9
5
/5
R1A_CVH22 REPLICASE POLYPROTEIN 1AB
6wc1[2] C SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
2
/2
SARS-coV-2 Non-structural protein 9
6wxd[1] D SO4
SULFATE ION[5 atoms]
B 100.0
/100.0
3
/3
R1AB_SARS2 Non-structural protein 9
7bwq[1] K SO4
SULFATE ION[5 atoms]
F 100.0
/100.0
2
/2
Nsp9
7kri[2] J SO4
SULFATE ION[5 atoms]
C 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
7n3k[8] K SO4
SULFATE ION[5 atoms]
A 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
3ee7[5] E PO4
PHOSPHATE ION[5 atoms]
A 75.0
/96.2
4
/4
R1A_CVHSA Replicase polyprotein 1a
3ee7[4] F PO4
PHOSPHATE ION[5 atoms]
A 100.0
/96.2
1
/1
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] M PO4
PHOSPHATE ION[5 atoms]
B 66.7
/96.3
3
/3
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] P PO4
PHOSPHATE ION[5 atoms]
D 100.0
/96.3
1
/1
R1A_CVHSA Replicase polyprotein 1a
6w9q[2] B PO4
PHOSPHATE ION[5 atoms]
A 100.0
/100.0
1
/1
R1AB_SARS2 3C-like proteinase peptide, Non-structural protein..
7kri[8] K MLI
MALONATE ION[7 atoms]
A 100.0
/100.0
3
/3
R1AB_SARS2 Non-structural protein 9
7thm[1] I POP
PYROPHOSPHATE 2-[9 atoms]
E 100.0
/100.0
1
/1
R1AB_SARS2 Non-structural protein 9
2j97[2] B MPD
(4S)-2-METHYL-2,4-PENTANEDIOL[8 atoms]
A 100.0
/54.9
4
/5
R1A_CVH22 REPLICASE POLYPROTEIN 1AB
2j98[1] C DTT
2,3-DIHYDROXY-1,4-DITHIOBUTANE[8 atoms]
A 50.0
/43.4
6
/6
R1A_CVH22 REPLICASE POLYPROTEIN 1AB
3ee7[6] H GOL
GLYCEROL[6 atoms]
A 100.0
/96.2
1
/1
R1A_CVHSA Replicase polyprotein 1a
3ee7[3] I GOL
GLYCEROL[6 atoms]
A 75.0
/96.2
4
/4
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] J GOL
GLYCEROL[6 atoms]
A 100.0
/96.2
6
/6
R1A_CVHSA Replicase polyprotein 1a
3ee7[2] N GOL
GLYCEROL[6 atoms]
B 100.0
/96.3
4
/4
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] O GOL
GLYCEROL[6 atoms]
B 100.0
/96.3
3
/3
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] S GOL
GLYCEROL[6 atoms]
C 100.0
/96.3
4
/4
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] T GOL
GLYCEROL[6 atoms]
C 100.0
/96.3
2
/2
R1A_CVHSA Replicase polyprotein 1a
3ee7[5] BA GOL
GLYCEROL[6 atoms]
D 100.0
/96.3
2
/2
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] X GOL
GLYCEROL[6 atoms]
D 100.0
/96.3
4
/4
R1A_CVHSA Replicase polyprotein 1a
3ee7[1] Y GOL
GLYCEROL[6 atoms]
D 100.0
/96.3
3
/3
R1A_CVHSA Replicase polyprotein 1a
5c94[2] B PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 25.0
/39.6
4
/4
R1AB_IBVM Non-structural protein 9
5c94[2] C PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 80.0
/39.6
5
/5
R1AB_IBVM Non-structural protein 9
5c94[2] C PEG
DI(HYDROXYETHYL)ETHER[7 atoms]
A 40.0
/39.6
5
/5
R1AB_IBVM Non-structural protein 9
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.