query                             1:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD:  60
sp|P0DTC1|R1A_SARS2[1]         4141:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD:4200
sp|P0DTD1|R1AB_SARS2[1]        4141:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD:4200
sp|P0C6U8|R1A_SARS[1]          4118:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4177
sp|P0C6X7|R1AB_SARS[1]         4118:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4177
sp|P0C6F8|R1A_BCHK3[1]         4112:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD:4171
sp|P0C6F5|R1A_BC279[1]         4124:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4183
sp|P0C6W2|R1AB_BCHK3[1]        4112:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD:4171
sp|P0C6V9|R1AB_BC279[1]        4124:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4183
sp|P0C6T7|R1A_BCRP3[1]         4116:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4175
sp|P0C6W6|R1AB_BCRP3[1]        4116:NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD:4175
sp|P0C6T6|R1A_BCHK9[1]         3983:NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST:4041
sp|P0C6W5|R1AB_BCHK9[1]        3983:NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST:4041
sp|K9N638|R1A_MERS1[1]         4128:NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD:4186
sp|K9N7C7|R1AB_MERS1[1]        4128:NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD:4186
sp|P0C6T4|R1A_BCHK4[1]         4172:NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD:4230
sp|P0C6F7|R1A_BC133[1]         4179:NNEIHPKGLKTMVVTAGIDQVNCSS-SAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD:4237
sp|P0C6W1|R1AB_BC133[1]        4179:NNEIHPKGLKTMVVTAGIDQVNCSS-SAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD:4237
sp|P0C6W3|R1AB_BCHK4[1]        4172:NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD:4230
sp|P0C6T5|R1A_BCHK5[1]         4219:NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD:4277
sp|P0C6W4|R1AB_BCHK5[1]        4219:NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD:4277
sp|P0C6U6|R1A_CVHNL[1]         3800:NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG:3857
sp|P0C6T9|R1A_CVBLU[1]         4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6T8|R1A_CVBEN[1]         4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6U7|R1A_CVHOC[1]         4123:NNELMPAKLKIQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6W7|R1AB_CVBEN[1]        4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6W8|R1AB_CVBLU[1]        4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6X5|R1AB_CVHNL[1]        3800:NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG:3857
sp|P0C6X6|R1AB_CVHOC[1]        4123:NNELMPAKLKIQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6U0|R1A_CVBM[1]          4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6U1|R1A_CVBQ[1]          4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6X0|R1AB_CVBQ[1]         4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6W9|R1AB_CVBM[1]         4123:NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD:4180
sp|P0C6X9|R1AB_CVMA5[1]        4208:NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGTGKIVYAILSDCDGLKYTKIVKED:4265
sp|P0C6V0|R1A_CVMA5[1]         4208:NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGTGKIVYAILSDCDGLKYTKIVKED:4265
sp|P0C6U9|R1A_CVM2[1]          4156:NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGMGKIVYAILSDCDGLKYTKIVKED:4213
sp|P0C6X8|R1AB_CVM2[1]         4156:NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGMGKIVYAILSDCDGLKYTKIVKED:4213
sp|P0C6U2|R1A_CVH22[1]         3825:NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS:3882
sp|P0C6V1|R1A_CVMJH[1]         4214:NNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKED:4271
sp|P0C6Y0|R1AB_CVMJH[1]        4214:NNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKED:4271
sp|P0C6X1|R1AB_CVH22[1]        3825:NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS:3882
sp|P0C6U5|R1A_CVHN5[1]         4161:NNELMPHKLKIQVVNSGSIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDD:4218
sp|P0C6F6|R1A_BC512[1]         3869:NNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG:3925
sp|P0C6W0|R1AB_BC512[1]        3869:NNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG:3925
sp|P0C6U3|R1A_CVHN1[1]         4211:NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIMKDD:4268
sp|P0C6X4|R1AB_CVHN5[1]        4161:NNELMPHKLKIQVVNSGSIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTKIMKDD:4218
sp|P0C6U4|R1A_CVHN2[1]         4181:NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIIKDD:4238
sp|P0C6X2|R1AB_CVHN1[1]        4211:NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIMKDD:4268
sp|P0C6X3|R1AB_CVHN2[1]        4181:NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIIKDD:4238
sp|P0C6V6|R1A_PEDV7[1]         3858:NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG:3914
sp|P0C6Y4|R1AB_PEDV7[1]        3858:NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG:3914
sp|P0C6V2|R1A_CVPPU[1]         3753:NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN:3812
sp|P0C6V5|R1A_IBVM[1]          3675:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEA:3733
sp|P0C6Y5|R1AB_CVPPU[1]        3753:NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN:3812
sp|P0C6Y3|R1AB_IBVM[1]         3675:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEA:3733
sp|Q98VG9|R1AB_FIPV[1]         3778:NNEILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNN:3837
sp|P0C6V4|R1A_IBVBC[1]         3673:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA:3731
sp|P0C6V3|R1A_IBVB[1]          3673:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA:3731
sp|P0C6Y2|R1AB_IBVBC[1]        3673:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA:3731
sp|P0C6Y1|R1AB_IBVB[1]         3673:NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA:3731

query                            61:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       : 120
sp|P0DTC1|R1A_SARS2[1]         4201:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4253
sp|P0DTD1|R1AB_SARS2[1]        4201:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4253
sp|P0C6U8|R1A_SARS[1]          4178:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4230
sp|P0C6X7|R1AB_SARS[1]         4178:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4230
sp|P0C6F8|R1A_BCHK3[1]         4172:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4224
sp|P0C6F5|R1A_BC279[1]         4184:GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4236
sp|P0C6W2|R1AB_BCHK3[1]        4172:GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4224
sp|P0C6V9|R1AB_BC279[1]        4184:GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ       :4236
sp|P0C6T7|R1A_BCRP3[1]         4176:GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ       :4228
sp|P0C6W6|R1AB_BCRP3[1]        4176:GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ       :4228
sp|P0C6T6|R1A_BCHK9[1]         4042:GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH       :4094
sp|P0C6W5|R1AB_BCHK9[1]        4042:GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH       :4094
sp|K9N638|R1A_MERS1[1]         4187:GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ       :4237
sp|K9N7C7|R1AB_MERS1[1]        4187:GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ       :4237
sp|P0C6T4|R1A_BCHK4[1]         4231:GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4281
sp|P0C6F7|R1A_BC133[1]         4238:GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4288
sp|P0C6W1|R1AB_BC133[1]        4238:GFINI--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4288
sp|P0C6W3|R1AB_BCHK4[1]        4231:GFINI--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4281
sp|P0C6T5|R1A_BCHK5[1]         4278:GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4328
sp|P0C6W4|R1AB_BCHK5[1]        4278:GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ       :4328
sp|P0C6U6|R1A_CVHNL[1]         3858:GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ       :3908
sp|P0C6T9|R1A_CVBLU[1]         4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6T8|R1A_CVBEN[1]         4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6U7|R1A_CVHOC[1]         4181:GNFVVL-ELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6W7|R1AB_CVBEN[1]        4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6W8|R1AB_CVBLU[1]        4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6X5|R1AB_CVHNL[1]        3858:GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ       :3908
sp|P0C6X6|R1AB_CVHOC[1]        4181:GNFVVL-ELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6U0|R1A_CVBM[1]          4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6U1|R1A_CVBQ[1]          4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6X0|R1AB_CVBQ[1]         4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6W9|R1AB_CVBM[1]         4181:GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ       :4232
sp|P0C6X9|R1AB_CVMA5[1]        4266:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4317
sp|P0C6V0|R1A_CVMA5[1]         4266:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4317
sp|P0C6U9|R1A_CVM2[1]          4214:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4265
sp|P0C6X8|R1AB_CVM2[1]         4214:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4265
sp|P0C6U2|R1A_CVH22[1]         3883:GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ       :3933
sp|P0C6V1|R1A_CVMJH[1]         4272:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4323
sp|P0C6Y0|R1AB_CVMJH[1]        4272:GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ       :4323
sp|P0C6X1|R1AB_CVH22[1]        3883:GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ       :3933
sp|P0C6U5|R1A_CVHN5[1]         4219:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4270
sp|P0C6F6|R1A_BC512[1]         3926:GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ       :3976
sp|P0C6W0|R1AB_BC512[1]        3926:GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ       :3976
sp|P0C6U3|R1A_CVHN1[1]         4269:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4320
sp|P0C6X4|R1AB_CVHN5[1]        4219:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4270
sp|P0C6U4|R1A_CVHN2[1]         4239:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4290
sp|P0C6X2|R1AB_CVHN1[1]        4269:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4320
sp|P0C6X3|R1AB_CVHN2[1]        4239:GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ       :4290
sp|P0C6V6|R1A_PEDV7[1]         3915:GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ       :3965
sp|P0C6Y4|R1AB_PEDV7[1]        3915:GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ       :3965
sp|P0C6V2|R1A_CVPPU[1]         3813:DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ       :3863
sp|P0C6V5|R1A_IBVM[1]          3734:GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3785
sp|P0C6Y5|R1AB_CVPPU[1]        3813:DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ       :3863
sp|P0C6Y3|R1AB_IBVM[1]         3734:GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3785
sp|Q98VG9|R1AB_FIPV[1]         3838:DV--IPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQ       :3888
sp|P0C6V4|R1A_IBVBC[1]         3732:GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3783
sp|P0C6V3|R1A_IBVB[1]          3732:GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3783
sp|P0C6Y2|R1AB_IBVBC[1]        3732:GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3783
sp|P0C6Y1|R1AB_IBVB[1]         3732:GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ       :3783