PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= YP_009725305.1 nsp9 [Severe acute respiratory syndrome coronavirus
2]
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 238 9e-73
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 237 1e-72
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 232 6e-71
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 232 9e-71
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 231 1e-70
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 231 1e-70
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 231 1e-70
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 231 2e-70
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 230 2e-70
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 230 3e-70
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 136 2e-37
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 136 2e-37
sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 122 1e-32
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 122 2e-32
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 119 2e-31
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 119 3e-31
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 119 3e-31
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 119 3e-31
sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 114 2e-29
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 113 3e-29
sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 102 2e-25
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 102 2e-25
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 102 2e-25
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 102 3e-25
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 102 3e-25
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 102 3e-25
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 101 4e-25
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 101 4e-25
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 101 4e-25
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 101 5e-25
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 101 5e-25
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 101 6e-25
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 99.4 2e-24
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 99.4 3e-24
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 99.0 3e-24
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 99.0 3e-24
sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 98.2 7e-24
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 97.8 8e-24
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 97.8 9e-24
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 97.8 9e-24
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 96.3 3e-23
sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 96.3 3e-23
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 96.3 3e-23
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 95.9 4e-23
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 95.9 5e-23
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 95.9 5e-23
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 95.5 6e-23
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 95.5 6e-23
sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 88.2 2e-20
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 88.2 2e-20
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 80.5 1e-17
sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 80.5 1e-17
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 80.1 2e-17
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 80.1 2e-17
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 79.7 2e-17
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 79.0 4e-17
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 79.0 4e-17
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 78.6 5e-17
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 78.6 5e-17
sp|Q88A51|Y546_PSESM UPF0229 protein PSPTO_0546 OS=Pseudomonas sy... 31.6 1.1
sp|Q4ZMG0|Y4632_PSEU2 UPF0229 protein Psyr_4632 OS=Pseudomonas sy... 31.6 1.1
sp|Q9PEU0|BAMD_XYLFA Outer membrane protein assembly factor BamD ... 31.2 1.4
sp|B1JDX9|Y4806_PSEPW UPF0229 protein PputW619_4806 OS=Pseudomona... 31.2 1.9
sp|Q87AR6|BAMD_XYLFT Outer membrane protein assembly factor BamD ... 30.8 2.5
sp|A5VXJ0|Y430_PSEP1 UPF0229 protein Pput_0430 OS=Pseudomonas put... 30.8 2.6
sp|P59351|Y396_PSEPK UPF0229 protein PP_0396 OS=Pseudomonas putid... 30.8 2.6
sp|B0KJ88|Y427_PSEPG UPF0229 protein PputGB1_0427 OS=Pseudomonas ... 30.8 2.6
sp|Q1AU02|COAX_RUBXD Type III pantothenate kinase OS=Rubrobacter ... 30.4 3.0
sp|Q1IG25|Y423_PSEE4 UPF0229 protein PSEEN0423 OS=Pseudomonas ent... 30.0 3.9
sp|P59352|Y2883_SHEON UPF0229 protein SO_2883 OS=Shewanella oneid... 29.6 5.6
sp|Q48NU2|Y628_PSE14 UPF0229 protein PSPPH_0628 OS=Pseudomonas sa... 29.6 5.6
>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405
Score = 238 bits (606), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD
Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1
SV=1
Length=7096
Score = 237 bits (605), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD
Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253
>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382
Score = 232 bits (592), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4118 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4177
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4178 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073
Score = 232 bits (591), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4118 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4177
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4178 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230
>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376
Score = 231 bits (590), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 110/113 (97%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4112 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD 4171
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4172 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4224
>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388
Score = 231 bits (590), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4124 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4183
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4184 GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4236
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067
Score = 231 bits (589), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 110/113 (97%), Positives = 110/113 (97%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4112 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD 4171
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4172 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4224
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079
Score = 231 bits (588), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4124 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4183
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4184 GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4236
>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380
Score = 230 bits (587), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4116 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4175
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4176 GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ 4228
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071
Score = 230 bits (586), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4116 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4175
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4176 GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ 4228
>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248
Score = 136 bits (343), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 82/113 (73%), Gaps = 1/113 (1%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A+ KS
Sbjct 3983 NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST 4041
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL
Sbjct 4042 GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH 4094
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930
Score = 136 bits (343), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 82/113 (73%), Gaps = 1/113 (1%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A+ KS
Sbjct 3983 NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST 4041
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL
Sbjct 4042 GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH 4094
>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=1a PE=1 SV=1
Length=4391
Score = 122 bits (307), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 80/113 (71%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR D
Sbjct 4128 NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD 4186
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQ
Sbjct 4187 GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ 4237
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=rep PE=1 SV=1
Length=7078
Score = 122 bits (307), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 80/113 (71%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR D
Sbjct 4128 NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD 4186
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQ
Sbjct 4187 GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ 4237
>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus
HKU4 OX=694007 GN=1a PE=1 SV=1
Length=4434
Score = 119 bits (298), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4172 NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4230
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4231 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4281
>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus
133/2005 OX=389230 GN=1a PE=3 SV=1
Length=4441
Score = 119 bits (298), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4179 NNEIHPKGLKTMVVTAGIDQVNCSS-SAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4237
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4238 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4288
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126
Score = 119 bits (298), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4179 NNEIHPKGLKTMVVTAGIDQVNCSS-SAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4237
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4238 GFINI--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4288
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119
Score = 119 bits (298), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4172 NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4230
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4231 GFINI--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4281
>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus
HKU5 OX=694008 GN=1a PE=3 SV=1
Length=4481
Score = 114 bits (284), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/113 (48%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG C + ++LAYY +G + ++ +LS+ LKWA+ D
Sbjct 4219 NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD 4277
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4278 GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4328
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182
Score = 113 bits (283), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 54/113 (48%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG C + ++LAYY +G + ++ +LS+ LKWA+ D
Sbjct 4219 NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD 4277
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4278 GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4328
>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus
NL63 OX=277944 GN=1a PE=1 SV=1
Length=4060
Score = 102 bits (254), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 69/113 (61%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++
Sbjct 3800 NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG 3857
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQ
Sbjct 3858 GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ 3908
>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1
Length=4383
Score = 102 bits (254), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1
Length=4383
Score = 102 bits (254), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
OC43 OX=31631 GN=1a PE=1 SV=1
Length=4383
Score = 102 bits (253), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKIQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094
Score = 102 bits (253), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094
Score = 102 bits (253), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729
Score = 101 bits (252), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 69/113 (61%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++
Sbjct 3800 NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG 3857
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQ
Sbjct 3858 GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ 3908
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095
Score = 101 bits (252), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKIQVVNSGPDQTCNTPTQC--YYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=1a PE=3 SV=1
Length=4383
Score = 101 bits (252), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=1a PE=3 SV=1
Length=4383
Score = 101 bits (252), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059
Score = 101 bits (251), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094
Score = 101 bits (251), Expect = 6e-25, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQC--YYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GNFVVL-ELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176
Score = 99.4 bits (246), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4208 NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGTGKIVYAILSDCDGLKYTKIVKED 4265
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4266 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4317
>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
(strain A59) OX=11142 GN=1a PE=1 SV=1
Length=4468
Score = 99.4 bits (246), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4208 NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGTGKIVYAILSDCDGLKYTKIVKED 4265
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4266 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4317
>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
(strain 2) OX=76344 GN=1a PE=3 SV=1
Length=4416
Score = 99.0 bits (245), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4156 NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGMGKIVYAILSDCDGLKYTKIVKED 4213
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4214 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4265
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124
Score = 99.0 bits (245), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4156 NNELMPQKLRTQVVNSGSDMNCNTPTQC--YYNTTGMGKIVYAILSDCDGLKYTKIVKED 4213
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4214 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4265
>sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus
229E OX=11137 GN=1a PE=1 SV=1
Length=4085
Score = 98.2 bits (243), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++
Sbjct 3825 NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS 3882
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQ
Sbjct 3883 GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 3933
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
(strain JHM) OX=11144 GN=1a PE=1 SV=1
Length=4474
Score = 97.8 bits (242), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ + YYNTT G+ V A+LSD LK+ + K D
Sbjct 4214 NNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4271
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4272 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4323
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180
Score = 97.8 bits (242), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ + YYNTT G+ V A+LSD LK+ + K D
Sbjct 4214 NNELMPQKLRTQVVNSGSDMNC--NIPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4271
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4272 GNCVV-LELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4323
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
229E OX=11137 GN=rep PE=1 SV=1
Length=6758
Score = 97.8 bits (242), Expect = 9e-24, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++
Sbjct 3825 NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS 3882
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQ
Sbjct 3883 GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 3933
>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1
Length=4421
Score = 96.3 bits (238), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 68/118 (58%), Gaps = 13/118 (11%)
Query 1 NNELSPVALRQMSCAAGT-----TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWAR 55
NNEL P L+ +G+ T C YYN GR V A+LSD+ LK+ +
Sbjct 4161 NNELMPHKLKIQVVNSGSDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTK 4213
Query 56 FPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
K DG + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4214 IMKDDGN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4270
>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus
512/2005 OX=693999 GN=1a PE=3 SV=1
Length=4128
Score = 96.3 bits (238), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++Q A + D NAL Y+ G F+ A +SD DLK ++
Sbjct 3869 NNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG 3925
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATVRLQ
Sbjct 3926 GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ 3976
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793
Score = 96.3 bits (238), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++Q A + D NAL Y+ G F+ A +SD DLK ++
Sbjct 3869 NNEIIPSKIKQRPIKA-EGEGVVADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG 3925
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATVRLQ
Sbjct 3926 GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ 3976
>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1
Length=4471
Score = 95.9 bits (237), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4211 NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIMKDD 4268
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4269 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4320
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132
Score = 95.9 bits (237), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/118 (44%), Positives = 68/118 (58%), Gaps = 13/118 (11%)
Query 1 NNELSPVALRQMSCAAGT-----TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWAR 55
NNEL P L+ +G+ T C YYN GR V A+LSD+ LK+ +
Sbjct 4161 NNELMPHKLKIQVVNSGSDINCNIPTQC-------YYNNVSSGRIVYAVLSDVDGLKYTK 4213
Query 56 FPKSDGTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
K DG + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4214 IMKDDGN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4270
>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1
Length=4441
Score = 95.9 bits (237), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4181 NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIIKDD 4238
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4239 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4290
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182
Score = 95.5 bits (236), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4211 NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIMKDD 4268
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4269 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4320
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152
Score = 95.5 bits (236), Expect = 6e-23, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4181 NNELMPHKLKIQVVNSGSDMNCNIPTQC--YYNNGSSGRIVYAVLSDVDGLKYTKIIKDD 4238
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4239 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4290
>sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1
Length=4117
Score = 88.2 bits (217), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q S A A YN G F+ A +SD DL+ ++
Sbjct 3858 NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG 3914
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQ
Sbjct 3915 GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ 3965
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781
Score = 88.2 bits (217), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q S A A YN G F+ A +SD DL+ ++
Sbjct 3858 NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG 3914
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQ
Sbjct 3915 GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ 3965
>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=1a PE=1 SV=1
Length=4017
Score = 80.5 bits (197), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3753 NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN 3812
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3813 DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ 3863
>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1
Length=3953
Score = 80.5 bits (197), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A F
Sbjct 3675 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEA 3733
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3734 GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3785
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=rep PE=1 SV=1
Length=6684
Score = 80.1 bits (196), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3753 NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN 3812
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3813 DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ 3863
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631
Score = 80.1 bits (196), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A F
Sbjct 3675 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTSISGSSVVAAITSSNPNLKVASFLNEA 3733
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3734 GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3785
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709
Score = 79.7 bits (195), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3778 NNEILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNN 3837
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3838 DV--IPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQ 3888
>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3
SV=1
Length=3951
Score = 79.0 bits (193), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1
Length=3951
Score = 79.0 bits (193), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep
PE=3 SV=1
Length=6629
Score = 78.6 bits (192), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1
SV=1
Length=6629
Score = 78.6 bits (192), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVESK-CYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|Q88A51|Y546_PSESM UPF0229 protein PSPTO_0546 OS=Pseudomonas
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283
GN=PSPTO_0546 PE=3 SV=1
Length=423
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/70 (26%), Positives = 32/70 (46%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ AR+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKLMQEIMAARYPSSDWNIYAAQASDGDNWNDDSPICREILTKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PFVQYYTYVE 374
>sp|Q4ZMG0|Y4632_PSEU2 UPF0229 protein Psyr_4632 OS=Pseudomonas
syringae pv. syringae (strain B728a) OX=205918 GN=Psyr_4632
PE=3 SV=1
Length=423
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 18/70 (26%), Positives = 32/70 (46%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ AR+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKLMQEIMAARYPSSDWNIYAAQASDGDNWNDDSPICREILTKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PFVQYYTYVE 374
>sp|Q9PEU0|BAMD_XYLFA Outer membrane protein assembly factor BamD
OS=Xylella fastidiosa (strain 9a5c) OX=160492 GN=bamD PE=3
SV=2
Length=292
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/30 (37%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 74 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 103
RF+ P + YLY+++GL+N NR +
Sbjct 103 RFIRTYPTHHNIPYLYYLRGLSNSNRDTIF 132
>sp|B1JDX9|Y4806_PSEPW UPF0229 protein PputW619_4806 OS=Pseudomonas
putida (strain W619) OX=390235 GN=PputW619_4806 PE=3 SV=1
Length=423
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKMMQEIMAERYPASDWNIYAAQASDGDNWNDDSPICREILSKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PHVQYYTYVE 374
>sp|Q87AR6|BAMD_XYLFT Outer membrane protein assembly factor BamD
OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) OX=183190
GN=bamD PE=3 SV=1
Length=293
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 74 RFVTDTPKGPKVKYLYFIKGLNNLNRGMVL 103
RF+ P + Y+Y+++GL+N NR +
Sbjct 103 RFIRTYPTHHNIPYMYYLRGLSNSNRDTIF 132
>sp|A5VXJ0|Y430_PSEP1 UPF0229 protein Pput_0430 OS=Pseudomonas
putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746
GN=Pput_0430 PE=3 SV=1
Length=423
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKLMQEIMAERYPASDWNIYAAQASDGDNWNDDSPICRDILSKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PHVQYYTYVE 374
>sp|P59351|Y396_PSEPK UPF0229 protein PP_0396 OS=Pseudomonas putida
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
/ KT2440) OX=160488 GN=PP_0396 PE=3 SV=1
Length=423
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKLMQEIMAERYPASDWNIYAAQASDGDNWNDDSPICRDILSKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PHVQYYTYVE 374
>sp|B0KJ88|Y427_PSEPG UPF0229 protein PputGB1_0427 OS=Pseudomonas
putida (strain GB-1) OX=76869 GN=PputGB1_0427 PE=3 SV=1
Length=424
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 306 FYSRETGGTIVSSALKLMQEIMAERYPASDWNIYAAQASDGDNWNDDSPICRDILSKQIM 365
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 366 PHVQYYTYVE 375
>sp|Q1AU02|COAX_RUBXD Type III pantothenate kinase OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129 / PRD-1) OX=266117
GN=coaX PE=3 SV=1
Length=264
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/80 (29%), Positives = 34/80 (43%), Gaps = 12/80 (15%)
Query 16 AGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDL--KWARFPKSDGTGTIYTELEPPC 73
+GT T C D AY +GG + L + L + A+ P+ D E EPP
Sbjct 130 SGTATTVCAVDAGGAY----RGGAILPGLYVSMDALASRTAKLPRVD------LEEEPPR 179
Query 74 RFVTDTPKGPKVKYLYFIKG 93
T+TP + ++Y G
Sbjct 180 AIATNTPDSIRSGFIYGYAG 199
>sp|Q1IG25|Y423_PSEE4 UPF0229 protein PSEEN0423 OS=Pseudomonas
entomophila (strain L48) OX=384676 GN=PSEEN0423 PE=3 SV=1
Length=423
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKMMQEIMADRYPASDWNIYAAQASDGDNWNDDSPICRDILANQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PHVQYYTYVE 374
>sp|P59352|Y2883_SHEON UPF0229 protein SO_2883 OS=Shewanella oneidensis
(strain MR-1) OX=211586 GN=SO_2883 PE=3 SV=1
Length=422
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/91 (21%), Positives = 41/91 (45%), Gaps = 9/91 (10%)
Query 19 TQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELE 70
TQ D++ +Y+ GG V + L + +++ AR+P + G + +
Sbjct 295 TQAKEVDEHEF-FYSQETGGTIVSSALKLMHEIQQARYPADEWNIYAAQASDGDNWADDS 353
Query 71 PPCRFVTDTPKGPKVKYLYFIKGLNNLNRGM 101
P C+ + + P V+Y +I+ N ++ +
Sbjct 354 PTCKQLLEQKILPLVRYFSYIEITNRAHQTL 384
>sp|Q48NU2|Y628_PSE14 UPF0229 protein PSPPH_0628 OS=Pseudomonas
savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730
GN=PSPPH_0628 PE=3 SV=1
Length=423
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query 31 YYNTTKGGRFVLALLSDLQDLKWARFPKSD--------GTGTIYTELEPPCRFVTDTPKG 82
+Y+ GG V + L +Q++ R+P SD G + + P CR +
Sbjct 305 FYSRETGGTIVSSALKLMQEIMAERYPSSDWNIYAAQASDGDNWNDDSPICREILTKQIM 364
Query 83 PKVKYLYFIK 92
P V+Y +++
Sbjct 365 PFVQYYTYVE 374
Lambda K H a alpha
0.318 0.134 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5132945728
Results from round 2
Query= YP_009725305.1 nsp9 [Severe acute respiratory syndrome coronavirus
2]
Length=113
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 184 3e-54
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 184 3e-54
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 184 5e-54
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 184 5e-54
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 183 8e-54
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 183 8e-54
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 183 1e-53
sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 182 2e-53
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 182 3e-53
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 182 3e-53
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 175 7e-51
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 175 7e-51
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 175 7e-51
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 175 8e-51
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 175 9e-51
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 174 9e-51
sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 174 1e-50
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 174 1e-50
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 174 1e-50
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 174 1e-50
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 174 2e-50
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 174 2e-50
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 174 2e-50
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 174 2e-50
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 174 2e-50
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 173 3e-50
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 173 4e-50
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 173 4e-50
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 172 4e-50
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 172 5e-50
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 172 5e-50
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 172 5e-50
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 172 6e-50
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 172 6e-50
sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 172 6e-50
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 172 8e-50
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 172 9e-50
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 172 1e-49
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 171 1e-49
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 170 2e-49
sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 170 2e-49
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 170 3e-49
sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 169 5e-49
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 169 6e-49
sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 165 1e-47
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 165 1e-47
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 164 4e-47
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 164 4e-47
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 161 4e-46
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 161 4e-46
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 161 5e-46
sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 161 6e-46
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 159 2e-45
sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 146 7e-41
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 145 1e-40
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 145 2e-40
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 145 2e-40
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 144 5e-40
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 144 5e-40
Sequences not found previously or not previously below threshold:
sp|B3A0P2|CAH1_LOTGI Putative carbonic anhydrase 1 OS=Lottia giga... 31.1 1.8
>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073
Score = 184 bits (468), Expect = 3e-54, Method: Composition-based stats.
Identities = 110/113 (97%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4118 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4177
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4178 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230
>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382
Score = 184 bits (468), Expect = 3e-54, Method: Composition-based stats.
Identities = 110/113 (97%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4118 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4177
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4178 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230
>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067
Score = 184 bits (467), Expect = 5e-54, Method: Composition-based stats.
Identities = 110/113 (97%), Positives = 110/113 (97%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4112 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD 4171
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4172 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4224
>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376
Score = 184 bits (466), Expect = 5e-54, Method: Composition-based stats.
Identities = 110/113 (97%), Positives = 110/113 (97%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4112 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNAKGGRFVLALLSDHQDLKWARFPKSD 4171
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4172 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4224
>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079
Score = 183 bits (465), Expect = 8e-54, Method: Composition-based stats.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4124 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4183
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4184 GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4236
>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388
Score = 183 bits (465), Expect = 8e-54, Method: Composition-based stats.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4124 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4183
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTP+GPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4184 GTGTIYTELEPPCRFVTDTPRGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4236
>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1
SV=1
Length=7096
Score = 183 bits (464), Expect = 1e-53, Method: Composition-based stats.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD
Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253
>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405
Score = 182 bits (463), Expect = 2e-53, Method: Composition-based stats.
Identities = 113/113 (100%), Positives = 113/113 (100%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD
Sbjct 4141 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 4200
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4201 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4253
>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071
Score = 182 bits (461), Expect = 3e-53, Method: Composition-based stats.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4116 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4175
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4176 GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ 4228
>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380
Score = 182 bits (461), Expect = 3e-53, Method: Composition-based stats.
Identities = 109/113 (96%), Positives = 111/113 (98%), Gaps = 0/113 (0%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNELSPVALRQMSCAAGTTQTACTDDNALAYYN +KGGRFVLALLSD QDLKWARFPKSD
Sbjct 4116 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSD 4175
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
GTGTIYTELEPPCRFVTDTPKGPKVKYL+FIKGLNNLNRGMVLGSLAATVRLQ
Sbjct 4176 GTGTIYTELEPPCRFVTDTPKGPKVKYLHFIKGLNNLNRGMVLGSLAATVRLQ 4228
>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119
Score = 175 bits (443), Expect = 7e-51, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4172 NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4230
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4231 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4281
>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus
(strain A59) OX=11142 GN=1a PE=1 SV=1
Length=4468
Score = 175 bits (443), Expect = 7e-51, Method: Composition-based stats.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4208 NNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4265
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4266 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4317
>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126
Score = 175 bits (443), Expect = 7e-51, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4179 NNEIHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4237
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4238 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4288
>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus
HKU4 OX=694007 GN=1a PE=1 SV=1
Length=4434
Score = 175 bits (443), Expect = 8e-51, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C + +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4172 NNEIHPKGLKTMVITAGVDQVNC-NSSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4230
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4231 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4281
>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus
133/2005 OX=389230 GN=1a PE=3 SV=1
Length=4441
Score = 175 bits (443), Expect = 9e-51, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M AG Q C+ +A+AYY +G R V+ LLS+ LKWA+ D
Sbjct 4179 NNEIHPKGLKTMVVTAGIDQVNCS-SSAVAYYEPVQGHRMVMGLLSENAHLKWAKVEGKD 4237
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+++YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4238 GF--INIELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4288
>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176
Score = 174 bits (442), Expect = 9e-51, Method: Composition-based stats.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4208 NNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4265
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4266 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4317
>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=1a PE=1 SV=1
Length=4391
Score = 174 bits (441), Expect = 1e-50, Method: Composition-based stats.
Identities = 59/113 (52%), Positives = 80/113 (71%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR D
Sbjct 4128 NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD 4186
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQ
Sbjct 4187 GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ 4237
>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=rep PE=1 SV=1
Length=7078
Score = 174 bits (441), Expect = 1e-50, Method: Composition-based stats.
Identities = 59/113 (52%), Positives = 80/113 (71%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG QT C + ++LAYY +G + ++ALLSD LKWAR D
Sbjct 4128 NNEIKPSGLKTMVVSAGQEQTNC-NTSSLAYYEPVQGRKMLMALLSDNAYLKWARVEGKD 4186
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G ++ EL+PPC+F+ PKGP+++YLYF+K LNNL+RG VLG +AATVRLQ
Sbjct 4187 GFVSV--ELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ 4237
>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1
Length=4383
Score = 174 bits (441), Expect = 1e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1
Length=4383
Score = 174 bits (441), Expect = 1e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus
(strain JHM) OX=11144 GN=1a PE=1 SV=1
Length=4474
Score = 174 bits (441), Expect = 2e-50, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ YYNTT G+ V A+LSD LK+ + K D
Sbjct 4214 NNELMPQKLRTQVVNSGSDMNCNIPTQ--CYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4271
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4272 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4323
>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094
Score = 174 bits (440), Expect = 2e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094
Score = 174 bits (440), Expect = 2e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180
Score = 174 bits (440), Expect = 2e-50, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ YYNTT G+ V A+LSD LK+ + K D
Sbjct 4214 NNELMPQKLRTQVVNSGSDMNCNIPTQ--CYYNTTGTGKIVYAILSDCDGLKYTKIVKED 4271
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4272 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4323
>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus
(strain 2) OX=76344 GN=1a PE=3 SV=1
Length=4416
Score = 174 bits (440), Expect = 2e-50, Method: Composition-based stats.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4156 NNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGKIVYAILSDCDGLKYTKIVKED 4213
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4214 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4265
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124
Score = 173 bits (439), Expect = 3e-50, Method: Composition-based stats.
Identities = 53/113 (47%), Positives = 68/113 (60%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P LR +G+ T YYNTT G+ V A+LSD LK+ + K D
Sbjct 4156 NNELMPQKLRTQVVNSGSDMNCNTPTQ--CYYNTTGMGKIVYAILSDCDGLKYTKIVKED 4213
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G+L++TVRLQ
Sbjct 4214 GN-CVVLELDPPCKFSVQDVKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4265
>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=1a PE=3 SV=1
Length=4383
Score = 173 bits (438), Expect = 4e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=1a PE=3 SV=1
Length=4383
Score = 173 bits (438), Expect = 4e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1
Length=4471
Score = 172 bits (437), Expect = 4e-50, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4211 NNELMPHKLKIQVVNSGSDMNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIMKDD 4268
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4269 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4320
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059
Score = 172 bits (437), Expect = 5e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1
Length=4421
Score = 172 bits (437), Expect = 5e-50, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4161 NNELMPHKLKIQVVNSGSDINCNIPTQ--CYYNNVSSGRIVYAVLSDVDGLKYTKIMKDD 4218
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4219 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4270
>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094
Score = 172 bits (437), Expect = 5e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKTQVVNSGPDQTCNTPTQ--CYYNNSYNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDVKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus
OC43 OX=31631 GN=1a PE=1 SV=1
Length=4383
Score = 172 bits (436), Expect = 6e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKIQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182
Score = 172 bits (436), Expect = 6e-50, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG C + ++LAYY +G + ++ +LS+ LKWA+ D
Sbjct 4219 NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD 4277
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4278 GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4328
>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus
HKU5 OX=694008 GN=1a PE=3 SV=1
Length=4481
Score = 172 bits (436), Expect = 6e-50, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 76/113 (67%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+ M +AG C + ++LAYY +G + ++ +LS+ LKWA+ D
Sbjct 4219 NNEIRPSGLKTMVVSAGIDHANC-NTSSLAYYEPVEGRKMLMGILSENAHLKWAKVEGRD 4277
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G I EL+PPC+F+ PKGP+V+YLYF+K LNNL+RG +LG +AATVRLQ
Sbjct 4278 GFVNI--ELQPPCKFLIAGPKGPEVRYLYFVKNLNNLHRGQLLGHIAATVRLQ 4328
>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182
Score = 172 bits (435), Expect = 8e-50, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4211 NNELMPHKLKIQVVNSGSDMNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIMKDD 4268
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4269 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4320
>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095
Score = 172 bits (435), Expect = 9e-50, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G QT T YYN + G+ V A+LSD+ LK+ + K D
Sbjct 4123 NNELMPAKLKIQVVNSGPDQTCNTPTQ--CYYNNSNNGKIVYAILSDVDGLKYTKILKDD 4180
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYF+KG N L RG V+G++++TVRLQ
Sbjct 4181 GN-FVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ 4232
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132
Score = 172 bits (435), Expect = 1e-49, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4161 NNELMPHKLKIQVVNSGSDINCNIPTQ--CYYNNVSSGRIVYAVLSDVDGLKYTKIMKDD 4218
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4219 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4270
>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1
Length=4441
Score = 171 bits (434), Expect = 1e-49, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4181 NNELMPHKLKIQVVNSGSDMNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIIKDD 4238
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4239 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4290
>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152
Score = 170 bits (432), Expect = 2e-49, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 3/113 (3%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P L+ +G+ YYN GR V A+LSD+ LK+ + K D
Sbjct 4181 NNELMPHKLKIQVVNSGSDMNCNIPTQ--CYYNNGSSGRIVYAVLSDVDGLKYTKIIKDD 4238
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G + EL+PPC+F KG K+KYLYFIKG N L RG V+G+L++T+RLQ
Sbjct 4239 GN-CVVLELDPPCKFSIQDVKGLKIKYLYFIKGCNTLARGWVVGTLSSTIRLQ 4290
>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus
NL63 OX=277944 GN=1a PE=1 SV=1
Length=4060
Score = 170 bits (432), Expect = 2e-49, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 69/113 (61%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++
Sbjct 3800 NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG 3857
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQ
Sbjct 3858 GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ 3908
>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729
Score = 170 bits (431), Expect = 3e-49, Method: Composition-based stats.
Identities = 54/113 (48%), Positives = 69/113 (61%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q A D NAL YNT G F+ A +S+ DLK+ ++
Sbjct 3800 NNEIMPGKLKQKPMKAEGDGGVLGDGNAL--YNTEGGKTFMYAYISNKADLKFVKWEYEG 3857
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI EL+ PCRF+ +TP GP+VKYLYF+K LN L RG VLG + AT+RLQ
Sbjct 3858 GCNTI--ELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ 3908
>sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus
229E OX=11137 GN=1a PE=1 SV=1
Length=4085
Score = 169 bits (429), Expect = 5e-49, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++
Sbjct 3825 NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS 3882
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQ
Sbjct 3883 GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 3933
>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus
229E OX=11137 GN=rep PE=1 SV=1
Length=6758
Score = 169 bits (429), Expect = 6e-49, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 4/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++ + ++ NAL YN G F+ A ++ +K+ ++
Sbjct 3825 NNEIMPGKMKVKATKGEGDGGITSEGNAL--YNNEGGRAFMYAYVTTKPGMKYVKWEHDS 3882
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G T+ ELEPPCRFV DTP GP++KYLYF+K LNNL RG VLG + ATVRLQ
Sbjct 3883 GVVTV--ELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 3933
>sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1
Length=4117
Score = 165 bits (419), Expect = 1e-47, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q S A A YN G F+ A +SD DL+ ++
Sbjct 3858 NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG 3914
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQ
Sbjct 3915 GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ 3965
>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781
Score = 165 bits (419), Expect = 1e-47, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 64/113 (57%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L+Q S A A YN G F+ A +SD DL+ ++
Sbjct 3858 NNEIIPGKLKQRSIKAEGDGIV---GEGKALYNNEGGRTFMYAFISDKPDLRVVKWEFDG 3914
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G TI ELEPP +F+ D+P G ++KYLYF++ LN L RG VLG + ATVRLQ
Sbjct 3915 GCNTI--ELEPPRKFLVDSPNGAQIKYLYFVRNLNTLRRGAVLGYIGATVRLQ 3965
>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248
Score = 164 bits (415), Expect = 4e-47, Method: Composition-based stats.
Identities = 66/113 (58%), Positives = 82/113 (73%), Gaps = 1/113 (1%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A+ KS
Sbjct 3983 NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST 4041
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL
Sbjct 4042 GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH 4094
>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930
Score = 164 bits (415), Expect = 4e-47, Method: Composition-based stats.
Identities = 66/113 (58%), Positives = 82/113 (73%), Gaps = 1/113 (1%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P +++M+ AG +QTAC D A+AYYN TK GR V+A+L+D L +A+ KS
Sbjct 3983 NNELMPQTVKRMNVVAGVSQTACVTD-AVAYYNATKEGRHVMAILADTDGLAFAKVEKST 4041
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G G + ELEPPC+F+ DTPKGP +KYLYF KGL NL RG VLG+LA TVRL
Sbjct 4042 GDGFVILELEPPCKFMVDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH 4094
>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=1a PE=1 SV=1
Length=4017
Score = 161 bits (408), Expect = 4e-46, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3753 NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN 3812
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3813 DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ 3863
>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible
gastroenteritis coronavirus (strain Purdue) OX=11151
GN=rep PE=1 SV=1
Length=6684
Score = 161 bits (408), Expect = 4e-46, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3753 NNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNN 3812
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3813 DI--IPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ 3863
>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793
Score = 161 bits (407), Expect = 5e-46, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++Q A D NAL Y+ G F+ A +SD DLK ++
Sbjct 3869 NNEIIPSKIKQRPIKAEGEGVV-ADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG 3925
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATVRLQ
Sbjct 3926 GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ 3976
>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus
512/2005 OX=693999 GN=1a PE=3 SV=1
Length=4128
Score = 161 bits (407), Expect = 6e-46, Method: Composition-based stats.
Identities = 52/113 (46%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P ++Q A D NAL Y+ G F+ A +SD DLK ++
Sbjct 3869 NNEIIPSKIKQRPIKAEGEGVV-ADGNAL--YSNEGGRTFMYAFISDKPDLKVVKWEFDG 3925
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G+ I ELEPPC+F+ + P GP VKYLYF++ LNNL RG VLG + ATVRLQ
Sbjct 3926 GSNAI--ELEPPCKFLVEAPSGPVVKYLYFVRNLNNLRRGAVLGFIGATVRLQ 3976
>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709
Score = 159 bits (403), Expect = 2e-45, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNE+ P L++ + A T + A + G F+ A ++ +LK+ ++ ++
Sbjct 3778 NNEILPGKLKEKAVKASATIDGDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNN 3837
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
I ELE P RF D GP+VKYLYF+K LN L RG VLG + ATVRLQ
Sbjct 3838 D--VIPIELEAPLRFYVDGVNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQ 3888
>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1
Length=3953
Score = 146 bits (369), Expect = 7e-41, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A F
Sbjct 3675 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTSISGSSVVAAITSSNPNLKVASFLNEA 3733
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3734 GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3785
>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631
Score = 145 bits (367), Expect = 1e-40, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 62/113 (55%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY + G V A+ S +LK A F
Sbjct 3675 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTSISGSSVVAAITSSNPNLKVASFLNEA 3733
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3734 GN-QIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3785
>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3
SV=1
Length=3951
Score = 145 bits (365), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1
Length=3951
Score = 145 bits (365), Expect = 2e-40, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep
PE=3 SV=1
Length=6629
Score = 144 bits (363), Expect = 5e-40, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1
SV=1
Length=6629
Score = 144 bits (363), Expect = 5e-40, Method: Composition-based stats.
Identities = 44/113 (39%), Positives = 61/113 (54%), Gaps = 2/113 (2%)
Query 1 NNELSPVALRQMSCAAGTTQTACTDDNALAYYNTTKGGRFVLALLSDLQDLKWARFPKSD 60
NNEL P ++ +C AG Q C+ ++ YY G V A+ S +LK A F
Sbjct 3673 NNELMPHGVKTKACVAGVDQAHCSVES-KCYYTNISGNSVVAAITSSNPNLKVASFLNEA 3731
Query 61 GTGTIYTELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
G IY +L+PPC+F +V YLYFIK ++ RGMVLG+++ V LQ
Sbjct 3732 GN-QIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783
>sp|B3A0P2|CAH1_LOTGI Putative carbonic anhydrase 1 OS=Lottia
gigantea OX=225164 PE=1 SV=1
Length=395
Score = 31.1 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 11/48 (23%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query 71 PPCRFVT-----DTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113
PPC P+ V Y Y ++ + G ++G LQ
Sbjct 307 PPCSESVLWLVAKQPRKVSVFYPYVVRNMETQREGEIIGDFGNLRPLQ 354
Lambda K H a alpha
0.318 0.143 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0437 0.140 1.90 42.6 43.6
Effective search space used: 5132945728
Search has CONVERGED!
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40