Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
3177292 | 76 | 20 | P59637(VEMP_SARS) | RecName: Full=Envelope small membrane protein ; Short=E protein ; Short=sM protein ; |
QUERYSEQ |
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNSSEGVPDLLV |
76 | region | name | description |
1-76 | CHAIN | /note="Envelope small membrane protein" /id="PRO_0000106074" | |
1-16 | TOPO_DOM | /note="Virion surface" | |
17-37 | TRANSMEM | /note="Helical" | |
38-76 | TOPO_DOM | /note="Intravirion" |
MONOMER | |||||||
76 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
2mm4 | A | 94.8 | VEMP_CVHSA Envelope small membrane protein | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
76 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7ntj[2] | A | MPP5_HUMAN MAGUK p55 subfamily member 5[86 aa] | B | 100.0 /100.0 |
4 /4 |
VEMP_SARS Envelope small membrane protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
76 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7k3g[22] | B | VEMP_SARS2 Envelope small membrane protein[31 aa] | A | 100.0 /100.0 |
12 /12 |
VEMP_SARS2 Envelope small membrane protein | |
5x29[5] | B | VEMP_CVHSA Envelope small membrane protein[58 aa] | A | 100.0 /94.8 |
9 /9 |
VEMP_CVHSA Envelope small membrane protein | |
5x29[5] | E | VEMP_CVHSA Envelope small membrane protein[58 aa] | A | 100.0 /94.8 |
6 /6 |
VEMP_CVHSA Envelope small membrane protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |