PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=E PE=1 SV=1
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acu... 146 5e-47
sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coron... 146 5e-47
sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coron... 146 5e-47
sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coron... 145 2e-46
sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe ac... 134 6e-42
sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coron... 53.1 7e-10
sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coron... 52.4 1e-09
sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle Ea... 45.4 8e-07
sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coron... 45.1 1e-06
sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human cor... 41.2 4e-05
sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human cor... 41.2 4e-05
sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coron... 34.7 0.012
sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine co... 33.5 0.029
sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human cor... 32.7 0.059
sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine cor... 31.6 0.18
sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine co... 31.2 0.23
sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coron... 30.8 0.28
sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine cor... 30.0 0.69
sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine cor... 30.0 0.69
sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine co... 30.0 0.69
sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine h... 30.0 0.78
sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine h... 30.0 0.78
sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human cor... 29.3 1.2
sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine cor... 28.9 1.7
sp|P30248|VEMP_IBVU5 Envelope small membrane protein OS=Avian inf... 28.9 2.9
sp|Q6Q1S0|VEMP_CVHNL Envelope small membrane protein OS=Human cor... 27.3 6.2
sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human cor... 27.3 7.3
sp|P30246|VEMP_IBVP3 Envelope small membrane protein OS=Avian inf... 27.3 7.8
>sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe
acute respiratory syndrome coronavirus OX=694009 GN=E PE=1
SV=1
Length=76
Score = 146 bits (369), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coronavirus
Rp3/2004 OX=349344 GN=E PE=3 SV=1
Length=76
Score = 146 bits (369), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coronavirus
HKU3 OX=442736 GN=E PE=3 SV=1
Length=76
Score = 146 bits (369), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coronavirus
279/2005 OX=389167 GN=E PE=3 SV=1
Length=76
Score = 145 bits (365), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 75/76 (99%), Positives = 75/76 (99%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLF AFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFFAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe
acute respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1
SV=1
Length=75
Score = 134 bits (336), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSS VPDLLV
Sbjct 61 RVKNLNSSR-VPDLLV 75
>sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coronavirus
133/2005 OX=389230 GN=E PE=3 SV=1
Length=82
Score = 53.1 bits (126), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (63%), Gaps = 0/64 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E+ GT+IVN +L + + LLV LA+LTA+RLC C + VN L P Y+Y+
Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLLVCLAVLTAIRLCVQCASGVNTLLFVPAFYIYN 60
Query 61 RVKN 64
+N
Sbjct 61 TGRN 64
>sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coronavirus
HKU4 OX=694007 GN=E PE=3 SV=1
Length=82
Score = 52.4 bits (124), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (63%), Gaps = 0/64 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E+ GT+IVN +L + + L+V LAILTA+RLC C + VN L P Y+Y+
Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPAFYIYN 60
Query 61 RVKN 64
+N
Sbjct 61 TGRN 64
>sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle
East respiratory syndrome-related coronavirus (isolate United
Kingdom/H123990006/2012) OX=1263720 GN=E PE=1 SV=1
Length=82
Score = 45.4 bits (106), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/77 (38%), Positives = 39/77 (51%), Gaps = 5/77 (6%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E G IVN + + + LLV +A LTA RLC C N LV+P +Y+Y+
Sbjct 1 MLPFVQERIGLFIVNFFIFTVVCAITLLVCMAFLTATRLCVQCMTGFNTLLVQPALYLYN 60
Query 61 R-----VKNLNSSEGVP 72
VK +S +P
Sbjct 61 TGRSVYVKFQDSKPPLP 77
>sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coronavirus
HKU5 OX=694008 GN=E PE=3 SV=1
Length=82
Score = 45.1 bits (105), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 2/75 (3%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVY- 59
M FV E+ G IVN +L + V L+V LAILTA+RLC C + + + P V++Y
Sbjct 1 MLPFVQEQIGAFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPAVHIYN 60
Query 60 -SRVKNLNSSEGVPD 73
R + E P
Sbjct 61 TGRAAYVKFQESHPP 75
>sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N5) OX=443241 GN=E PE=3 SV=1
Length=82
Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+T + L L+ V+FL+ +A+L ++LC C N+ ++ P+ YVY+R + L
Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67
Query 68 S 68
S
Sbjct 68 S 68
>sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N2) OX=443240 GN=E PE=3 SV=1
Length=82
Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+T + L L+ V+FL+ +A+L ++LC C N+ ++ P+ YVY+R + L
Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67
Query 68 S 68
S
Sbjct 68 S 68
>sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coronavirus
(strain 681) OX=33740 GN=E PE=3 SV=1
Length=88
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/38 (37%), Positives = 25/38 (66%), Gaps = 0/38 (0%)
Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++ +A L +++LC C + N L+ P++YVY+R K L
Sbjct 28 IIVVAFLASIKLCIQLCGLCNTLLLSPSIYVYNRSKQL 65
>sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine
coronavirus (strain A59) OX=11142 GN=E PE=1 SV=1
Length=83
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/46 (37%), Positives = 28/46 (61%), Gaps = 3/46 (7%)
Query 23 FVVFLLVTL---AILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
F V L+VT+ A L +++LC C + N ++ P++Y+Y R K L
Sbjct 20 FAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPSIYLYDRSKQL 65
>sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N1) OX=443239 GN=E PE=3 SV=1
Length=82
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/61 (30%), Positives = 30/61 (49%), Gaps = 0/61 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+T I ++L L ++ L+ +A L ++LC C N ++ P+ YVY R L
Sbjct 8 DTAWYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPSAYVYKRGMQLYK 67
Query 68 S 68
S
Sbjct 68 S 68
>sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine
coronavirus (strain S) OX=11145 GN=E PE=3 SV=1
Length=88
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (2%)
Query 14 VNSVLLFLAFVVFLLVTL-AILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
V ++ +A + + +T+ A L +++LC C + N ++ P++Y+Y R K L
Sbjct 13 VGQIIFIVAVCLMVTITVVAFLASIKLCIQLCGLCNTLVLSPSIYLYDRSKQL 65
>sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine
coronavirus (strain JHM) OX=11144 GN=E PE=3 SV=1
Length=88
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/38 (32%), Positives = 24/38 (63%), Gaps = 0/38 (0%)
Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++ +A L +++ C C + N L+ P++Y+Y+R K L
Sbjct 28 IIVVAFLASIKRCIQLCGLCNTLLLSPSIYLYNRSKQL 65
>sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coronavirus
HKU9 OX=694006 GN=E PE=3 SV=1
Length=79
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MY V LI N ++L + ++ ++V A+L L+ C V + KPT+ VY+
Sbjct 1 MYDIVGTNNSILIANVLVLIIICLLVVIVGCALLLILQFVFGVCGFVFKFVCKPTILVYN 60
Query 61 RVKN---LNSSE 69
+ +N LN E
Sbjct 61 KFRNESLLNERE 72
>sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine
coronavirus (strain Quebec) OX=11133 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine
coronavirus (strain Ontario) OX=231422 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine
coronavirus (strain OK-0514) OX=231432 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine
coronavirus (strain LY-138) OX=11131 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine
coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine
coronavirus (strain LSU-94LSS-051) OX=233261 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine
coronavirus (strain F15) OX=11129 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine
coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine
hemagglutinating encephalomyelitis virus (strain IAF-404)
OX=230236 GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine
hemagglutinating encephalomyelitis virus (strain 67N) OX=230237
GN=E PE=3 SV=1
Length=84
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (59%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N ++ P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human
coronavirus OC43 OX=31631 GN=E PE=3 SV=1
Length=84
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/38 (29%), Positives = 22/38 (58%), Gaps = 0/38 (0%)
Query 28 LVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
+V +A L +LC C + N ++ P++YV++R +
Sbjct 30 IVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQF 67
>sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine
coronavirus (strain Mebus) OX=11132 GN=E PE=3 SV=1
Length=84
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 0/39 (0%)
Query 27 LLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
++V +A L +LC C + N + P++YV++R +
Sbjct 29 IIVVVAFLATFKLCIQLCGMCNTLGLSPSIYVFNRGRQF 67
>sp|P30248|VEMP_IBVU5 Envelope small membrane protein OS=Avian
infectious bronchitis virus (strain UK/183/66) OX=31629 GN=E
PE=3 SV=1
Length=107
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query 7 EETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCC----NIVNVSLVKPTVYVYSRV 62
EE G+ + +V +F AFV L+ A+ ++ CC V V K T +VY
Sbjct 10 EENGSFLT-AVYIFCAFVALYLLGRALHAFVQAADACCLFWYTWVVVPGAKGTAFVYKHT 68
Query 63 --KNLNSSE 69
K LN+ E
Sbjct 69 YGKKLNNPE 77
>sp|Q6Q1S0|VEMP_CVHNL Envelope small membrane protein OS=Human
coronavirus NL63 OX=277944 GN=E PE=3 SV=1
Length=77
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/65 (18%), Positives = 31/65 (48%), Gaps = 0/65 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+ +++NS+L L + F ++ + + ++LC C + +L +P ++ ++
Sbjct 7 DDNGIVLNSILWLLVMIFFFVLAMTFIKLIQLCFTCHYFFSRTLYQPVYKIFLAYQDYMQ 66
Query 68 SEGVP 72
VP
Sbjct 67 IAPVP 71
>sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human
coronavirus 229E OX=11137 GN=E PE=3 SV=1
Length=77
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (48%), Gaps = 0/65 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+ L+VN +L + +V LLV + I+ ++LC C N ++ P VY ++
Sbjct 7 DDHALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMH 66
Query 68 SEGVP 72
+ P
Sbjct 67 IDPFP 71
>sp|P30246|VEMP_IBVP3 Envelope small membrane protein OS=Avian
infectious bronchitis virus (strain Portugal/322/82) OX=31625
GN=E PE=3 SV=1
Length=93
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query 7 EETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCC----NIVNVSLVKPTVYVYSRV 62
EE G+ ++ + +F+AFV L+ A+ ++ CC V V K T +VY
Sbjct 10 EENGS-VLTAFYIFVAFVALYLLGRALQAFVQAADACCLFWYTWVVVPGAKGTTFVYKHT 68
Query 63 --KNLNSSE 69
K LN E
Sbjct 69 YGKKLNKPE 77
Lambda K H a alpha
0.329 0.141 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5215016118
Results from round 2
Query= sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=E PE=1 SV=1
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coron... 74.6 3e-18
sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coron... 74.2 3e-18
sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coron... 74.2 3e-18
sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acu... 72.3 2e-17
sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coron... 72.3 2e-17
sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coron... 72.3 2e-17
sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coron... 71.9 2e-17
sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle Ea... 72.3 2e-17
sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe ac... 65.7 7e-15
sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human cor... 60.3 1e-12
sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human cor... 60.3 1e-12
Sequences not found previously or not previously below threshold:
sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human cor... 51.8 2e-09
sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine co... 49.9 1e-08
sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coron... 48.8 3e-08
sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine co... 48.8 4e-08
sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine cor... 48.4 6e-08
sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine h... 47.6 1e-07
sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine h... 47.6 1e-07
sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine cor... 47.6 1e-07
sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine cor... 47.6 1e-07
sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine co... 47.6 1e-07
sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine cor... 47.2 1e-07
sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human cor... 47.2 1e-07
sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coron... 28.4 2.7
sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human cor... 28.4 3.1
>sp|A3EXD5|VEMP_BCHK5 Envelope small membrane protein OS=Bat coronavirus
HKU5 OX=694008 GN=E PE=3 SV=1
Length=82
Score = 74.6 bits (182), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (3%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E+ G IVN +L + V L+V LAILTA+RLC C + + + P V++Y+
Sbjct 1 MLPFVQEQIGAFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPAVHIYN 60
Query 61 RVK--NLNSSEGVPD 73
+ + E P
Sbjct 61 TGRAAYVKFQESHPP 75
>sp|Q0Q4E8|VEMP_BC133 Envelope small membrane protein OS=Bat coronavirus
133/2005 OX=389230 GN=E PE=3 SV=1
Length=82
Score = 74.2 bits (181), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/68 (43%), Positives = 40/68 (59%), Gaps = 0/68 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E+ GT+IVN +L + + LLV LA+LTA+RLC C + VN L P Y+Y+
Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLLVCLAVLTAIRLCVQCASGVNTLLFVPAFYIYN 60
Query 61 RVKNLNSS 68
+N
Sbjct 61 TGRNAYFK 68
>sp|A3EX99|VEMP_BCHK4 Envelope small membrane protein OS=Bat coronavirus
HKU4 OX=694007 GN=E PE=3 SV=1
Length=82
Score = 74.2 bits (181), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/68 (43%), Positives = 40/68 (59%), Gaps = 0/68 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E+ GT+IVN +L + + L+V LAILTA+RLC C + VN L P Y+Y+
Sbjct 1 MLPFVHEQIGTIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPAFYIYN 60
Query 61 RVKNLNSS 68
+N
Sbjct 61 TGRNAYFK 68
>sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe
acute respiratory syndrome coronavirus OX=694009 GN=E PE=1
SV=1
Length=76
Score = 72.3 bits (176), Expect = 2e-17, Method: Composition-based stats.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q3I5J3|VEMP_BCRP3 Envelope small membrane protein OS=Bat coronavirus
Rp3/2004 OX=349344 GN=E PE=3 SV=1
Length=76
Score = 72.3 bits (176), Expect = 2e-17, Method: Composition-based stats.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q3LZW9|VEMP_BCHK3 Envelope small membrane protein OS=Bat coronavirus
HKU3 OX=442736 GN=E PE=3 SV=1
Length=76
Score = 72.3 bits (176), Expect = 2e-17, Method: Composition-based stats.
Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|Q0Q473|VEMP_BC279 Envelope small membrane protein OS=Bat coronavirus
279/2005 OX=389167 GN=E PE=3 SV=1
Length=76
Score = 71.9 bits (175), Expect = 2e-17, Method: Composition-based stats.
Identities = 75/76 (99%), Positives = 75/76 (99%), Gaps = 0/76 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLF AFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFFAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSSEGVPDLLV
Sbjct 61 RVKNLNSSEGVPDLLV 76
>sp|K9N5R3|VEMP_MERS1 Envelope small membrane protein OS=Middle
East respiratory syndrome-related coronavirus (isolate United
Kingdom/H123990006/2012) OX=1263720 GN=E PE=1 SV=1
Length=82
Score = 72.3 bits (176), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/78 (35%), Positives = 38/78 (49%), Gaps = 5/78 (6%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M FV E G IVN + + + LLV +A LTA RLC C N LV+P +Y+Y+
Sbjct 1 MLPFVQERIGLFIVNFFIFTVVCAITLLVCMAFLTATRLCVQCMTGFNTLLVQPALYLYN 60
Query 61 RVK-----NLNSSEGVPD 73
+ +S +P
Sbjct 61 TGRSVYVKFQDSKPPLPP 78
>sp|P0DTC4|VEMP_SARS2 Envelope small membrane protein OS=Severe
acute respiratory syndrome coronavirus 2 OX=2697049 GN=E PE=1
SV=1
Length=75
Score = 65.7 bits (159), Expect = 7e-15, Method: Composition-based stats.
Identities = 72/76 (95%), Positives = 73/76 (96%), Gaps = 1/76 (1%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKP+ YVYS
Sbjct 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYS 60
Query 61 RVKNLNSSEGVPDLLV 76
RVKNLNSS VPDLLV
Sbjct 61 RVKNLNSSR-VPDLLV 75
>sp|Q0ZME5|VEMP_CVHN5 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N5) OX=443241 GN=E PE=3 SV=1
Length=82
Score = 60.3 bits (145), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+T + L L+ V+FL+ +A+L ++LC C N+ ++ P+ YVY+R + L
Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67
Query 68 S 68
S
Sbjct 68 S 68
>sp|Q14EA8|VEMP_CVHN2 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N2) OX=443240 GN=E PE=3 SV=1
Length=82
Score = 60.3 bits (145), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (56%), Gaps = 0/61 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNS 67
+T + L L+ V+FL+ +A+L ++LC C N+ ++ P+ YVY+R + L
Sbjct 8 DTAWYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNRGRQLYK 67
Query 68 S 68
S
Sbjct 68 S 68
>sp|Q5MQC8|VEMP_CVHN1 Envelope small membrane protein OS=Human
coronavirus HKU1 (isolate N1) OX=443239 GN=E PE=3 SV=1
Length=82
Score = 51.8 bits (123), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/68 (28%), Positives = 31/68 (46%), Gaps = 0/68 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M +T I ++L L ++ L+ +A L ++LC C N ++ P+ YVY
Sbjct 1 MVDLFFNDTAWYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPSAYVYK 60
Query 61 RVKNLNSS 68
R L S
Sbjct 61 RGMQLYKS 68
>sp|P06591|VEMP_CVMJH Envelope small membrane protein OS=Murine
coronavirus (strain JHM) OX=11144 GN=E PE=3 SV=1
Length=88
Score = 49.9 bits (118), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/67 (21%), Positives = 34/67 (51%), Gaps = 0/67 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M++ +T + + + ++ ++ +A L +++ C C + N L+ P++Y+Y+
Sbjct 1 MFNLFLTDTVWYVGQIIFIVAVCLMVTIIVVAFLASIKRCIQLCGLCNTLLLSPSIYLYN 60
Query 61 RVKNLNS 67
R K L
Sbjct 61 RSKQLYK 67
>sp|Q9IKC8|VEMP_CVRSD Envelope small membrane protein OS=Rat coronavirus
(strain 681) OX=33740 GN=E PE=3 SV=1
Length=88
Score = 48.8 bits (115), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/67 (24%), Positives = 35/67 (52%), Gaps = 0/67 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M++ +T + + + ++ ++ +A L +++LC C + N L+ P++YVY+
Sbjct 1 MFNLFLIDTVWYVGQIIFIVAVCLMVTIIVVAFLASIKLCIQLCGLCNTLLLSPSIYVYN 60
Query 61 RVKNLNS 67
R K L
Sbjct 61 RSKQLYK 67
>sp|P0C2R0|VEMP_CVMA5 Envelope small membrane protein OS=Murine
coronavirus (strain A59) OX=11142 GN=E PE=1 SV=1
Length=83
Score = 48.8 bits (115), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 0/67 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M++ +T + + +F ++ ++ +A L +++LC C + N ++ P++Y+Y
Sbjct 1 MFNLFLTDTVWYVGQIIFIFAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPSIYLYD 60
Query 61 RVKNLNS 67
R K L
Sbjct 61 RSKQLYK 67
>sp|P29076|VEMP_CVMS Envelope small membrane protein OS=Murine
coronavirus (strain S) OX=11145 GN=E PE=3 SV=1
Length=88
Score = 48.4 bits (114), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/67 (21%), Positives = 33/67 (49%), Gaps = 0/67 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
M++ +T + + + ++ + +A L +++LC C + N ++ P++Y+Y
Sbjct 1 MFNLFLTDTVWYVGQIIFIVAVCLMVTITVVAFLASIKLCIQLCGLCNTLVLSPSIYLYD 60
Query 61 RVKNLNS 67
R K L
Sbjct 61 RSKQLYK 67
>sp|P0C2Q9|VEMP_CVPIA Envelope small membrane protein OS=Porcine
hemagglutinating encephalomyelitis virus (strain IAF-404)
OX=230236 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q8|VEMP_CVP67 Envelope small membrane protein OS=Porcine
hemagglutinating encephalomyelitis virus (strain 67N) OX=230237
GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q7|VEMP_CVBQ Envelope small membrane protein OS=Bovine
coronavirus (strain Quebec) OX=11133 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q6|VEMP_CVBON Envelope small membrane protein OS=Bovine
coronavirus (strain Ontario) OX=231422 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q5|VEMP_CVBOK Envelope small membrane protein OS=Bovine
coronavirus (strain OK-0514) OX=231432 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q4|VEMP_CVBLY Envelope small membrane protein OS=Bovine
coronavirus (strain LY-138) OX=11131 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q3|VEMP_CVBLU Envelope small membrane protein OS=Bovine
coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q2|VEMP_CVBLS Envelope small membrane protein OS=Bovine
coronavirus (strain LSU-94LSS-051) OX=233261 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P15775|VEMP_CVBF Envelope small membrane protein OS=Bovine
coronavirus (strain F15) OX=11129 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P0C2Q1|VEMP_CVBEN Envelope small membrane protein OS=Bovine
coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=E PE=3 SV=1
Length=84
Score = 47.6 bits (112), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 30/59 (51%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|P15779|VEMP_CVBM Envelope small membrane protein OS=Bovine
coronavirus (strain Mebus) OX=11132 GN=E PE=3 SV=1
Length=84
Score = 47.2 bits (111), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ ++V +A L +LC C + N + P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLGLSPSIYVFNRGRQFY 68
>sp|Q04854|VEMP_CVHOC Envelope small membrane protein OS=Human
coronavirus OC43 OX=31631 GN=E PE=3 SV=1
Length=84
Score = 47.2 bits (111), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 0/59 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLN 66
+T + + + ++ +V +A L +LC C + N ++ P++YV++R +
Sbjct 10 DTVWYVGQIIFIVAICLLVTIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNRGRQFY 68
>sp|A3EXG8|VEMP_BCHK9 Envelope small membrane protein OS=Bat coronavirus
HKU9 OX=694006 GN=E PE=3 SV=1
Length=79
Score = 28.4 bits (62), Expect = 2.7, Method: Composition-based stats.
Identities = 19/64 (30%), Positives = 33/64 (52%), Gaps = 0/64 (0%)
Query 1 MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS 60
MY V LI N ++L + ++ ++V A+L L+ C V + KPT+ VY+
Sbjct 1 MYDIVGTNNSILIANVLVLIIICLLVVIVGCALLLILQFVFGVCGFVFKFVCKPTILVYN 60
Query 61 RVKN 64
+ +N
Sbjct 61 KFRN 64
>sp|P19741|VEMP_CVH22 Envelope small membrane protein OS=Human
coronavirus 229E OX=11137 GN=E PE=3 SV=1
Length=77
Score = 28.4 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 17/66 (26%), Positives = 32/66 (48%), Gaps = 0/66 (0%)
Query 11 TLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNLNSSEG 70
L+VN +L + +V LLV + I+ ++LC C N ++ P VY ++ +
Sbjct 10 ALVVNVLLWCVVLIVILLVCITIIKLIKLCFTCHMFCNRTVYGPIKNVYHIYQSYMHIDP 69
Query 71 VPDLLV 76
P ++
Sbjct 70 FPKRVI 75
Lambda K H a alpha
0.317 0.147 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0450 0.140 1.90 42.6 43.6
Effective search space used: 5215016118
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40