Contact Molecules for Homologous Proteins | ||||
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seq_id(%): [0] [30] [40] [50] [60] [70] [80] [90] [95] [100] | ![]() [show] [download] [help] |
PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
3778377 | 422 | 112 | P59595(NCAP_SARS) | RecName: Full=Nucleoprotein ;AltName: Full=Nucleocapsid protein ; Short=NC ; Short=Protein N ; |
QUERYSEQ |
MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTR NPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADSTQA |
422 |
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region | name | description |
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1-422 | CHAIN | /note="Nucleoprotein" /id="PRO_0000106003" |
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49-176 | DOMAIN | /note="CoV N NTD" |
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248-365 | DOMAIN | /note="CoV N CTD" |
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1-52 | REGION | /note="Disordered" |
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42-187 | REGION | /note="RNA-binding" |
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45-181 | REGION | /note="RNA-binding" |
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167-214 | REGION | /note="Disordered" |
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177-204 | REGION | /note="SR region" |
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234-287 | REGION | /note="Disordered" |
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259-362 | REGION | /note="Dimerization" |
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362-422 | REGION | /note="Disordered" |
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1-35 | COMPBIAS | /note="Polar residues" |
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178-209 | COMPBIAS | /note="Polar residues" |
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234-252 | COMPBIAS | /note="Polar residues" |
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265-287 | COMPBIAS | /note="Polar residues" |
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363-383 | COMPBIAS | /note="Basic and acidic residues" |
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404-422 | COMPBIAS | /note="Polar residues" |
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93-93 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" |
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108-108 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" |
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150-150 | BINDING | /ligand="RNA" /ligand_id="ChEBI:CHEBI:33697" |
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1-422 | DISORDER | predicted by DISOPRED |
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422 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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A | 99.3 | NCAP_CVHSA Nucleocapsid protein | |||
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B | 100.0 | NCAP_CVHSA Nucleocapsid protein | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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422 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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H | Single-domain antibody E2[136 aa] | A | 90.0 /95.8 |
10 /10 |
NCAP_SARS2 Nucleoprotein |
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C | NC2[84 aa] | A | 92.3 /95.4 |
13 /13 |
NCAP_SARS2 Nucleoprotein |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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422 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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E |
GTP
|
C | 100.0 /95.5 |
4 /4 |
NCAP_SARS2 Nucleoprotein |
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E |
GTP
|
D | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein |
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G |
GKP
|
A | 100.0 /95.4 |
8 /8 |
NCAP_SARS2 Nucleoprotein |
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H |
5GP
|
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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I |
5GP
|
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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R |
GUN
|
C | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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R |
GUN
|
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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FA |
GMP
|
E | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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FA |
GMP
|
F | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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422 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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N |
MG
|
D | 100.0 /95.8 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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G |
CL
|
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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H |
CL
|
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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K |
CL
|
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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E |
CL
|
B | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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L |
CL
|
E | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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O |
CL
|
B | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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P |
CL
|
B | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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V |
CL
|
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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X |
CL
|
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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Y |
CL
|
C | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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EA |
CL
|
E | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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IA |
CL
|
F | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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J |
NA
|
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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J |
K
|
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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K |
K
|
A | 66.7 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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L |
K
|
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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M |
K
|
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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N |
K
|
A | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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422 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B | NCAP_CVHSA NUCLEOCAPSID PROTEIN[113 aa] | A | 100.0 /100.0 |
52 /52 |
NCAP_CVHSA NUCLEOCAPSID PROTEIN |
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A | NCAP_CVHSA Nucleocapsid protein[97 aa] | A | 100.0 /100.0 |
8 /8 |
NCAP_CVHSA Nucleocapsid protein |
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A | NCAP_CVHSA Nucleocapsid protein[97 aa] | A | 100.0 /100.0 |
6 /6 |
NCAP_CVHSA Nucleocapsid protein |
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B | NCAP_CVHSA Nucleocapsid protein[96 aa] | A | 100.0 /100.0 |
1 /1 |
NCAP_CVHSA Nucleocapsid protein |
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A | NCAP_CVHSA Nucleocapsid protein[97 aa] | B | 100.0 /100.0 |
3 /3 |
NCAP_CVHSA Nucleocapsid protein |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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422 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B |
EDO
|
A | 100.0 /100.0 |
2 /2 |
NCAP_CVHSA Nucleocapsid protein |
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C |
PO4
|
A | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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D |
PO4
|
A | 100.0 /95.3 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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F |
PO4
|
B | 80.0 /95.3 |
5 /5 |
NCAP_SARS2 Nucleoprotein |
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H |
PO4
|
B | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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M |
PO4
|
G | 100.0 /95.3 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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M |
PO4
|
H | 100.0 /95.3 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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I |
PO4
|
A | 100.0 /96.0 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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C |
SO4
|
A | 100.0 /100.0 |
2 /2 |
NCAP_CVHSA Nucleocapsid protein |
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E |
SO4
|
A | 100.0 /95.6 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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F |
SO4
|
A | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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G |
SO4
|
B | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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I |
SO4
|
C | 100.0 /95.7 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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E |
ACT
|
A | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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E |
ACT
|
B | 100.0 /95.6 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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M |
ACT
|
C | 100.0 /95.8 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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M |
ACT
|
D | 100.0 /95.8 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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O |
ACT
|
L | 100.0 /95.8 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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I |
ACT
|
B | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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I |
ACT
|
D | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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F |
PEG
|
A | 100.0 /95.4 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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C |
PEG
|
B | 100.0 /95.7 |
5 /5 |
NCAP_SARS2 Nucleoprotein |
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D |
PEG
|
B | 100.0 /95.7 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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H |
PEG
|
A | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein |
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H |
PEG
|
B | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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F |
GOL
|
A | 100.0 /95.5 |
3 /3 |
NCAP_SARS2 Nucleoprotein |
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F |
GOL
|
B | 100.0 /95.4 |
9 /9 |
NCAP_SARS2 Nucleoprotein |
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G |
GOL
|
A | 100.0 /95.4 |
4 /4 |
NCAP_SARS2 Nucleoprotein |
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H |
GOL
|
B | 100.0 /95.4 |
1 /1 |
NCAP_SARS2 Nucleoprotein |
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G |
GOL
|
C | 100.0 /95.4 |
2 /2 |
NCAP_SARS2 Nucleoprotein |
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J |
GOL
|
F | 75.0 /95.5 |
4 /4 |
NCAP_SARS2 Nucleoprotein |
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G |
SCN
|
A | 100.0 /95.4 |
5 /5 |
NCAP_SARS2 Nucleoprotein |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |