PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 862 0.0
sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 841 0.0
sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 831 0.0
sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 828 0.0
sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 686 0.0
sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 269 3e-85
sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 269 4e-85
sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 268 8e-85
sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 268 9e-85
sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 235 2e-71
sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 199 1e-57
sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 199 1e-57
sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 194 5e-56
sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 194 5e-56
sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 193 1e-55
sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 193 1e-55
sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 193 1e-55
sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 192 2e-55
sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 191 5e-55
sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 191 5e-55
sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 191 9e-55
sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 190 1e-54
sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 189 3e-54
sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 189 5e-54
sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 188 7e-54
sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 187 3e-53
sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 180 1e-50
sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 180 1e-50
sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 179 3e-50
sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 177 1e-49
sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 177 1e-49
sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 177 1e-49
sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 176 2e-49
sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 176 4e-49
sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 170 5e-47
sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 125 1e-30
sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 122 1e-29
sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 120 4e-29
sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 120 6e-29
sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 118 3e-28
sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 118 3e-28
sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 117 4e-28
sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 118 4e-28
sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 117 6e-28
sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 117 6e-28
sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 117 6e-28
sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 117 7e-28
sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 116 2e-27
sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 115 5e-27
sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 114 9e-27
sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 114 1e-26
sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 112 3e-26
sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 109 3e-25
sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 101 2e-22
sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 100 3e-22
sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 100 4e-22
sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 99.8 7e-22
sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 99.8 7e-22
sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 98.6 2e-21
sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 96.3 1e-20
sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 92.4 4e-19
sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 90.9 9e-19
sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 86.7 3e-17
sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 61.2 6e-09
sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1 PE... 35.0 1.7
sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1 P... 33.9 3.6
sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudo... 33.5 4.0
sp|M1W0Y0|EASA_CLAP2 Probable inactive dehydrogenase easA OS=Clav... 32.3 7.6
sp|Q6ZXC1|EASA_CLAPU Probable inactive dehydrogenase easA OS=Clav... 32.3 7.9
>sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG
Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ
Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK
Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
Query 421 QA 422
QA
Sbjct 421 QA 422
>sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=N PE=3 SV=1
Length=421
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/422 (98%), Positives = 417/422 (99%), Gaps = 1/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQRSAPRITFGGPTDSTDNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSG+ Q
Sbjct 180 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YK FPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 360 YKIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 419
Query 421 QA 422
QA
Sbjct 420 QA 421
>sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736
GN=N PE=3 SV=1
Length=421
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/422 (97%), Positives = 415/422 (98%), Gaps = 1/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQS QRSAPRITFGGP DS DNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQS-QRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQ+SSRSSSRSRGNSRNSTPGSSRG+SPAR+ASGGGETALALLLLDRLNQLESKVSGKGQ
Sbjct 180 SQSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQ GQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQ+LIRQG DYK
Sbjct 240 QQPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQ+SMSGASADST
Sbjct 360 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADST 419
Query 421 QA 422
QA
Sbjct 420 QA 421
>sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=N PE=3 SV=1
Length=420
Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/422 (97%), Positives = 414/422 (98%), Gaps = 2/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQRSAPRITFGGP+DSTDNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASG GETALALLLLDRLNQLESKVSGKGQ
Sbjct 180 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
+WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 YWPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YK FPPTEPKKDKKKKTDEAQPLPQR KKQPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 360 YKAFPPTEPKKDKKKKTDEAQPLPQR-KKQPTVTLLPAADMDDFSRQLQNSMSGASADST 418
Query 421 QA 422
QA
Sbjct 419 QA 420
>sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ
Sbjct 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST
Sbjct 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417
Query 421 QA 422
QA
Sbjct 418 QA 419
>sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008
GN=N PE=3 SV=1
Length=427
Score = 269 bits (688), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/374 (46%), Positives = 224/374 (60%), Gaps = 28/374 (7%)
Query 16 ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPI 75
+ F ++ N+Q GR + +P+ PN T SWFT LTQHGK+ L FP GQGVP+
Sbjct 10 VVFANDNETPTNSQRSGR-----PRTKPRPAPNTTVSWFTGLTQHGKQPLAFPPGQGVPL 64
Query 76 NTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVA 135
N NS P GY+RR R++ G+G K L+PRWYFYY GTGPEA+LP+ + K+GI+WV
Sbjct 65 NANSTPAQNAGYWRRQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDGIIWVH 123
Query 136 TEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNS 195
GA + P GTRNP N+ A V Q GTTLPK F+ EG+ G SQ+SSR+SSRS S
Sbjct 124 ENGATDAP-SVFGTRNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSRSSSRS 182
Query 196 RNSTPGSSRGNSPARMA-------SGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
+ S+ + A A G G ++ L L RL LE+ GKG +Q + +T
Sbjct 183 SSRNGRSNNSSRNASPAPHGVGDVVGAGTLSVLLDLQKRLADLEA---GKGNKQP-KVIT 238
Query 249 KKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF 308
KK A A +K R KR ATK YNV QAFG RGP Q NFGD + GT+ WPQIA+
Sbjct 239 KKDAQAAKQKMRHKRVATKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAEL 298
Query 309 APSASAFFGMSRIGM------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYK 362
APSASAF S+ + E +L+Y GAIKLD K+P + + +L+ +IDAYK
Sbjct 299 APSASAFMSTSQFKVTHQSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAYK 358
Query 363 TFPPTEPKKDKKKK 376
+F PKK++K+K
Sbjct 359 SF----PKKERKQK 368
>sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=N PE=1 SV=1
Length=411
Score = 269 bits (687), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 187/365 (51%), Positives = 239/365 (65%), Gaps = 20/365 (5%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR ++F D T+ N + GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRAVSFADNNDITNTNLSRGR-GRNPK---PRAAPNNTVSWYTGLTQHGKVPLTFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS P GY+RR R++ G+G +K+L+PRWYFYY GTGPEA+LP+ A K+G
Sbjct 61 QGVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV +GA + P GTRNPNN++A V Q GT LPK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSV 178
Query 191 SRGNSRNSTPGS-----SRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQ 245
SR +SR+S+ GS +RG SP SG G LL LD LN+L++ SGK +Q Q +
Sbjct 179 SRNSSRSSSQGSRSGNSTRGTSPG--PSGIGAVGGDLLYLDLLNRLQALESGKVKQSQPK 236
Query 246 TVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
+TKK AA A K R KRT+TK +N+ QAFG RGP QGNFGD L + GT+ WPQI
Sbjct 237 VITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQI 296
Query 306 AQFAPSASAFFGMSRIGMEVTPSGT------WLTYHGAIKLDDKDPQFKDNVILLNKHID 359
A+ AP+ASAF GMS+ + + +L Y GAIKLD K+P + + LL ++ID
Sbjct 297 AELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNID 356
Query 360 AYKTF 364
AYKTF
Sbjct 357 AYKTF 361
>sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007
GN=N PE=3 SV=1
Length=423
Score = 268 bits (685), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 192/384 (50%), Positives = 242/384 (63%), Gaps = 31/384 (8%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR I+F D+ N Q GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRTISFADNNDNQPNQQQRGR-GRNPK---PRPAPNNTVSWYTGLTQHGKNPLAFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS GY+RR R++ G+G +K+L+PRW+FYY GTGPEA+LP+ + K+G
Sbjct 61 QGVPLNANSTTAQNAGYWRRQDRKINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV EGA + P GTRNP N+AA V Q GT +PK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVYEEGATDAP-SVFGTRNPANDAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSN 178
Query 191 SRGNSRNSTPG-----SSRGNSPARMASGGGETALALLLL----DRLNQLESKVSGKGQQ 241
SR +SR+S+ G +SRG SP G E+ AL LL RL LES G+
Sbjct 179 SRNSSRSSSRGGRSTSNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADLES-----GKS 233
Query 242 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKH 301
+Q + VTKK AA A K R KR ATK +NVTQAFG RGP QGNFGD + + GT+
Sbjct 234 KQPKVVTKKDAAAAKNKMRHKRVATKGFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPR 293
Query 302 WPQIAQFAPSASAFFGMSRIGMEVTPSG------TWLTYHGAIKLDDKDPQFKDNVILLN 355
WPQ+A+ APSASAF MS+ + + +L+Y GAIKLD K+P +K + LL
Sbjct 294 WPQMAELAPSASAFMSMSQFKLTHQSNDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLE 353
Query 356 KHIDAYKTFPPTEPKKDKKKKTDE 379
+IDAYKTF PKK++K KT E
Sbjct 354 SNIDAYKTF----PKKERKPKTTE 373
>sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=N PE=3 SV=1
Length=424
Score = 268 bits (685), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 190/384 (49%), Positives = 241/384 (63%), Gaps = 31/384 (8%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR I+F D+ N Q GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRTISFADNNDNQPNQQQRGR-GRNPK---PRPAPNNTVSWYTGLTQHGKNPLAFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS GY+RR R++ G+G +K+L+PRW+FYY GTGPEA+LP+ + K+G
Sbjct 61 QGVPLNANSTTAQNAGYWRRQDRKINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV EGA + P GTRNP N+AA V Q GT +PK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVYEEGATDAP-SVFGTRNPANDAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSN 178
Query 191 SRGNSRNSTP-----GSSRGNSPARMASGGGETALALLLL----DRLNQLESKVSGKGQQ 241
SR +SR+++ +SRG SP G E+ AL LL RL LES G+
Sbjct 179 SRNSSRSNSRGGRSTSNSRGTSPVSHGVGSAESLAALPLLLDLQKRLADLES-----GKS 233
Query 242 QQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKH 301
+Q + VTKK AA A K R KR ATK +NVTQAFG RGP QGNFGD + + GT+
Sbjct 234 KQPKVVTKKDAAAAKNKMRHKRVATKGFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPR 293
Query 302 WPQIAQFAPSASAFFGMSRIGMEVTPSG------TWLTYHGAIKLDDKDPQFKDNVILLN 355
WPQ+A+ APSASAF MS+ + + +L+Y GAIKLD K+P +K + LL
Sbjct 294 WPQMAELAPSASAFMSMSQFKLTHQSNDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLE 353
Query 356 KHIDAYKTFPPTEPKKDKKKKTDE 379
+IDAYKTF PKK++K KT E
Sbjct 354 ANIDAYKTF----PKKERKPKTTE 373
>sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006
GN=N PE=3 SV=1
Length=468
Score = 235 bits (600), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/383 (43%), Positives = 218/383 (57%), Gaps = 17/383 (4%)
Query 13 APRITFGGPTDSTDNN---QNGGRNGARPKQ----------RRPQGLPNNTASWFTALTQ 59
+P++TF +D +D+ +NG RNGARPK +P+ P SWF L Q
Sbjct 13 SPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAPPQNVSWFAPLVQ 72
Query 60 HGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPE 119
GK ELRFPRG+GVP++ + GY+ R R + G GK +PRWYFYY GTG
Sbjct 73 TGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANPRWYFYYTGTGRF 131
Query 120 ASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRG 179
L +G IVWV EGA +GTRNP+N+ A +QL G +PKGFYAEG
Sbjct 132 GDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG--IPKGFYAEGRGS 189
Query 180 GSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSG-K 238
+ S S + SR +SR ++ SSRG SP R A+ L+ +L +LES+VSG K
Sbjct 190 RGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQKLERLESQVSGTK 249
Query 239 GQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTD 298
+ VTK AA +KK R KRTA K VT +GRRGP +GNFGD+++I+ GTD
Sbjct 250 PATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGNFGDREMIKLGTD 309
Query 299 YKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHI 358
+ AQ AP+ S+F MS + WL Y GAIKL DP ++ +L +++
Sbjct 310 DPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPNYEQWTKILAENL 369
Query 359 DAYKTFPPTEPKKDKKKKTDEAQ 381
+AYK FPPTEPKKDKKKK + AQ
Sbjct 370 NAYKDFPPTEPKKDKKKKEETAQ 392
>sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain
JHM) OX=11144 GN=N PE=1 SV=1
Length=455
Score = 199 bits (505), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 150/396 (38%), Positives = 209/396 (53%), Gaps = 47/396 (12%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTA-----SWFTALTQHGK-EELRFP 68
+ T+ T+ NNQN GR +PKQ PN+ + SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGLNNQNRGRKN-QPKQT-ATTQPNSGSVVPHYSWFSGITQFQKGKEFQFA 84
Query 69 RGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGAN 127
+GQGVPI Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 85 QGQGVPIANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDD 144
Query 128 KEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRS 187
EG+VWVA++ A I R+P+++ A + GT LP+GFY EGS G S +SRS
Sbjct 145 IEGVVWVASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGS-GRSAPASRS 203
Query 188 SSR--SRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQ 245
SR SRG N SS PA +A L+L +L + GQ +Q
Sbjct 204 GSRPQSRG-PNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ-- 254
Query 246 TVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKH 301
VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT
Sbjct 255 -VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQ 310
Query 302 WPQIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYHGAIKLDDKDPQFKDNVI 352
+P +A+ AP+A AFF S++ + SG L Y GA++ D P F+ +
Sbjct 311 FPILAELAPTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYSGAVRFDSTLPGFETIMK 370
Query 353 LLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQK 388
+LN++++AY +++ D P PQR++
Sbjct 371 VLNENLNAY---------QNQDGGADVVSPKPQRKR 397
>sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain
1) OX=11139 GN=N PE=3 SV=1
Length=455
Score = 199 bits (505), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 145/394 (37%), Positives = 203/394 (52%), Gaps = 43/394 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTA-----SWFTALTQHGK-EELRFP 68
+ T+ T+ NNQN GR +PKQ PN+ + SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQTA-TTQPNSGSVVPHYSWFSGITQFQKGKEFQFA 84
Query 69 RGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGAN 127
+GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 85 QGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDD 144
Query 128 KEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRS 187
+G+VWVA++ A I R+P+++ A + GT LP+GFY EGS + AS
Sbjct 145 IDGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSG 204
Query 188 SSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
S N SS PA +A L+L +L + GQ +Q V
Sbjct 205 SRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ---V 255
Query 248 TKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWP 303
TK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 256 TKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFP 312
Query 304 QIAQFAPSASAFFGMSRIGMEVTPSG---------TWLTYHGAIKLDDKDPQFKDNVILL 354
+A+ AP+ SAFF S++ + SG L Y GAI+ D P F+ + +L
Sbjct 313 ILAELAPTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSGAIRFDSTLPGFETIMKVL 372
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQK 388
N+++DAY +D+ D P PQR++
Sbjct 373 NENLDAY---------QDQAGGADVVSPKPQRKR 397
>sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=N PE=3 SV=1
Length=441
Score = 194 bits (492), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 130/335 (39%), Positives = 187/335 (56%), Gaps = 27/335 (8%)
Query 42 RPQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGD 99
+PQG P SWF+ +TQ K + +FP GQGVPI P + GY+ + RR + D
Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112
Query 100 GKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV 159
G+ K+L PRWYFYYLGTGP AS YG EGI WVA+ A + + R+P A
Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172
Query 160 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETA 219
+ GT LP+G+Y EGS G S ++SR SRS+ N+ SR NS R +
Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHSD------ 224
Query 220 LALLLLDRLNQLESKVSGK-GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQA 274
+++ D +++ S V K G+ + Q VTK++A E KPRQKRT K NV Q
Sbjct 225 -SIVKPDMADEIASLVLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQC 283
Query 275 FGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS 328
FG+RGP Q NFG+ ++++ GT+ +P +A+ AP+ AFF S++ + +PS
Sbjct 284 FGKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPS 340
Query 329 -GTW-LTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
T+ L Y G+I+ D P F+ + +L +++DAY
Sbjct 341 KDTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375
>sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=N PE=3 SV=1
Length=441
Score = 194 bits (492), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 130/335 (39%), Positives = 187/335 (56%), Gaps = 27/335 (8%)
Query 42 RPQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGD 99
+PQG P SWF+ +TQ K + +FP GQGVPI P + GY+ + RR + D
Sbjct 53 QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGIPPSEAKGYWYKHNRRSFKTAD 112
Query 100 GKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV 159
G+ K+L PRWYFYYLGTGP AS YG EGI WVA+ A + + R+P A
Sbjct 113 GQQKQLLPRWYFYYLGTGPYASSSYGDAHEGIFWVASHQADTSIPSDVSARDPTIQEAIP 172
Query 160 LQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETA 219
+ GT LP+G+Y EGS G S ++SR SRS+ N+ SR NS R +
Sbjct 173 TRFSPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHSD------ 224
Query 220 LALLLLDRLNQLESKVSGK-GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQA 274
+++ D +++ S V K G+ + Q VTK++A E KPRQKRT K NV Q
Sbjct 225 -SIVKPDMADEIASLVLAKLGKDSKPQQVTKQNAKEIRHKILMKPRQKRTPNKFCNVQQC 283
Query 275 FGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM------EVTPS 328
FG+RGP Q NFG+ ++++ GT+ +P +A+ AP+ AFF S++ + +PS
Sbjct 284 FGKRGPLQ---NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELFKRDSDADSPS 340
Query 329 -GTW-LTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
T+ L Y G+I+ D P F+ + +L +++DAY
Sbjct 341 KDTFELRYSGSIRFDSTLPGFETIMKVLKENLDAY 375
>sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583
GN=N PE=2 SV=1
Length=457
Score = 193 bits (491), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 207/411 (50%), Gaps = 43/411 (10%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTA-----SWFTALTQHGK-EELRFP 68
+ T+ T+ NNQN GR +PKQ PN+ + SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGSNNQNRGRRN-QPKQT-ATTQPNSGSVVPHYSWFSGITQFQKGKEFKFA 84
Query 69 RGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGAN 127
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 85 EGQGVPIANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRWYFYYLGTGPYAGAEYGDD 144
Query 128 KEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRS 187
EG+ WVA + A I R+P+++ A + GT LP+G+Y EGS + AS
Sbjct 145 VEGVCWVANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLPQGYYVEGSGRSAPASRSG 204
Query 188 SSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
S N SS PA + +A L+L +L + GQ +Q V
Sbjct 205 SRSQSRGPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKLGK------DAGQPKQ---V 255
Query 248 TKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWP 303
TK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 256 TKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFP 312
Query 304 QIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
+A+ AP+A AFF S++ + E T L Y GA++ D P F+ + +L
Sbjct 313 ILAELAPTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVL 372
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++++AY +++ D P PQR++ Q V ++D+ S
Sbjct 373 RENLNAY---------QNQDGGADVVSPKPQRKRGQRQVAQKKNDEVDNVS 414
>sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain
S) OX=11145 GN=N PE=3 SV=1
Length=454
Score = 193 bits (490), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 182/351 (52%), Gaps = 37/351 (11%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E +F +GQGVPI +Q GY+ R RR + DG+ K+L PRW
Sbjct 67 SWFSGITQFQKGKEFQFVQGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLP 169
YFYYLGTGP A YG + EG+VWVA++ A I R+P+++ A + GT LP
Sbjct 127 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLP 186
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLN 229
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLG 246
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQG 285
+ GQ +Q VTK+SA E + KPRQKRT KQ V Q FG+RGP Q
Sbjct 247 K------DAGQPKQ---VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHG 336
NFG ++++ GT +P +A+ AP+A AFF S++ + E T L Y G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 337 AIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
A++ D P F+ + +LN++++AY+ K D P PQR+
Sbjct 355 AVRFDSTLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRK 395
>sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain
A59) OX=11142 GN=N PE=1 SV=2
Length=454
Score = 193 bits (490), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 197/393 (50%), Gaps = 44/393 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTA-----SWFTALTQHGK-EELRFP 68
+ T+ T+ NNQN GR +PKQ PN+ + SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQT-ATTQPNSGSVVPHYSWFSGITQFQKGKEFQFA 84
Query 69 RGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGAN 127
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 85 EGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDS 144
Query 128 KEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRS 187
EG+ WVA A + I R+P+++ A + GT LP+GFY EGS + AS
Sbjct 145 IEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSG 204
Query 188 SSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
S N SS PA +A L+L +L + GQ +Q V
Sbjct 205 SRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ---V 255
Query 248 TKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWP 303
TK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 256 TKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFP 312
Query 304 QIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
+A+ AP+ AFF S++ + E T L Y GA++ D P F+ + +L
Sbjct 313 ILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVL 372
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
N++++AY+ K D P PQR+
Sbjct 373 NENLNAYQ----------KDGGADVVSPKPQRK 395
>sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain
3) OX=11140 GN=N PE=1 SV=1
Length=454
Score = 192 bits (489), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 197/393 (50%), Gaps = 44/393 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTA-----SWFTALTQHGK-EELRFP 68
+ T+ T+ NNQN GR +PKQ PN+ + SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQT-ATTQPNSGSVVPHYSWFSGITQFQKGKEFQFA 84
Query 69 RGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGAN 127
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 85 EGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDS 144
Query 128 KEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRS 187
EG+ WVA A + I R+P+++ A + GT LP+GFY EGS + AS
Sbjct 145 IEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSG 204
Query 188 SSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
S N SS PA +A L+L +L + GQ +Q V
Sbjct 205 SRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ---V 255
Query 248 TKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWP 303
TK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 256 TKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFP 312
Query 304 QIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
+A+ AP+ AFF S++ + E T L Y GA++ D P F+ + +L
Sbjct 313 ILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVL 372
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
N++++AY+ K D P PQR+
Sbjct 373 NENLNAYQ----------KDGGADVVSPKPQRK 395
>sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain
DVIM) OX=231423 GN=N PE=3 SV=1
Length=455
Score = 191 bits (486), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 197/392 (50%), Gaps = 41/392 (10%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTALTQHGK-EELRFPR 69
+ T+ T+ NNQN GR +PKQ + G SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQTATTQSNSGSVVPHYSWFSGITQFQKGKEFQFAD 85
Query 70 GQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 86 GQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGATYGDSI 145
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
EG+ WVA A + I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 146 EGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGS 205
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
S N SS PA +A L+L +L + GQ +Q VT
Sbjct 206 RSQSRGSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ---VT 256
Query 249 KKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQ 304
K+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 257 KQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPI 313
Query 305 IAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLN 355
+A+ AP+ AFF S++ + E T L Y GAI+ D P F+ + +LN
Sbjct 314 LAELAPTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSGAIRFDSTLPGFETIMKVLN 373
Query 356 KHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
++++AY +++ D P PQR+
Sbjct 374 ENLNAY---------QNQAGGVDVVSPKPQRK 396
>sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=N PE=1 SV=1
Length=441
Score = 191 bits (485), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 127/336 (38%), Positives = 187/336 (56%), Gaps = 29/336 (9%)
Query 42 RPQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGD 99
+PQG SWF+ +TQ K + +F GQGVPI P + GY+ R +RR + D
Sbjct 53 QPQGNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGVPPSEAKGYWYRHSRRSFKTAD 112
Query 100 GKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGA-LNTPKDHIGTRNPNNNAAT 158
G+ K+L PRWYFYYLGTGP A+ YG + EG+ WVA A +TP D + +R+P A
Sbjct 113 GQQKQLLPRWYFYYLGTGPYANASYGESLEGVFWVANHQADTSTPSD-VSSRDPTTQEAI 171
Query 159 VLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGET 218
+ P GT LP+G+Y EGS G S ++SR SRS+ N+ SR NS R +
Sbjct 172 PTRFPPGTILPQGYYVEGS-GRSASNSRPGSRSQSRGPNNR-SLSRSNSNFRHSD----- 224
Query 219 ALALLLLDRLNQLESKVSGK-GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQ 273
+++ D +++ + V K G+ + Q VTK++A E KPRQKRT K NV Q
Sbjct 225 --SIVKPDMADEIANLVLAKLGKDSKPQQVTKQNAKEIRHKILTKPRQKRTPNKHCNVQQ 282
Query 274 AFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGT--- 330
FG+RGP Q NFG+ ++++ GT+ +P +A+ AP+ AFF S++ + S
Sbjct 283 CFGKRGPSQ---NFGNAEMLKLGTNDPQFPILAELAPTPGAFFFGSKLDLVKRDSEADSP 339
Query 331 -----WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
L Y G+I+ D P F+ + +L ++++AY
Sbjct 340 VKDVFELHYSGSIRFDSTLPGFETIMKVLEENLNAY 375
>sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=N PE=3 SV=1
Length=454
Score = 191 bits (484), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 193/387 (50%), Gaps = 42/387 (11%)
Query 23 DSTDNNQNGGRNGARPKQRRPQGLPNNTAS------WFTALTQHGK-EELRFPRGQGVPI 75
D T+ QN G G R + ++ NT S WF+ +TQ K +E +F GQGVPI
Sbjct 32 DQTERGQNNGNRGRRNQPKQTATTQPNTGSVVPHYSWFSGITQFQKGKEFQFAGGQGVPI 91
Query 76 NTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWV 134
P +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A +G + EG+ WV
Sbjct 92 ANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSIEGVFWV 151
Query 135 ATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGN 194
A A I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 152 ANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGSRSQSRG 211
Query 195 SRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAE 254
N SS PA +A L+L +L + GQ +Q VTK+SA E
Sbjct 212 PNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGK------DAGQPKQ---VTKQSAKE 262
Query 255 ASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAP 310
+ KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P +A+ AP
Sbjct 263 VRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPEMLKLGTSDPQFPILAELAP 319
Query 311 SASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
+ AFF S++ + E T L Y GA++ D P F+ + +LN++++AY
Sbjct 320 TPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDSTLPGFETIMKVLNENLNAY 379
Query 362 KTFPPTEPKKDKKKKTDEAQPLPQRQK 388
+++ D P PQR++
Sbjct 380 ---------QNQAGGADVVSPKPQRKR 397
>sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain
2) OX=76344 GN=N PE=2 SV=1
Length=451
Score = 190 bits (483), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/351 (37%), Positives = 182/351 (52%), Gaps = 36/351 (10%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E +F +GQGVPI + +Q GY+ R RR + DG+ K+L PRW
Sbjct 63 SWFSGITQFQKGKEFQFAQGQGVPIASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRW 122
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLP 169
YFYYLGTGP A YG + EG+VWVA++ A + R+P+++ A + GT LP
Sbjct 123 YFYYLGTGPHAGAEYGDDIEGVVWVASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLP 182
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLN 229
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 183 QGFYVEGSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLG 242
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQG 285
+ GQ +Q VTK+SA E + KPRQKRT KQ V Q FG+RGP Q
Sbjct 243 K------DAGQPKQ---VTKQSAKEVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ--- 290
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHG 336
NFG ++++ GT +P +A+ AP+ SAFF S++ + E T L Y G
Sbjct 291 NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 350
Query 337 AIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
AI+ D P F+ + +L ++++AY +D+ D P P R+
Sbjct 351 AIRFDSTLPGFETIMKVLTENLNAY---------QDQAGSVDLVSPKPPRR 392
>sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3
SV=1
Length=449
Score = 189 bits (481), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/359 (38%), Positives = 192/359 (53%), Gaps = 42/359 (12%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E F GQGVPI + GY+ R RR + DG ++L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTL 168
YFYYLGTGP A YG + +G+ WVA+ A +NTP D I R+P+++ A + P GT L
Sbjct 124 YFYYLGTGPHAKHQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182
Query 169 PKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRL 228
P+G+Y EGS G S +SRS+SR+ N S SR NS R ++ G + D
Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRA-PNRAPSAGSRSRANSGNRTSTPG-------VTPDMA 233
Query 229 NQLESKVSGK--GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQ 282
+Q+ S V K + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q
Sbjct 234 DQIASLVLAKLGKDATKPQQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ 293
Query 283 TQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTW 331
NFG ++++ GT +P +A+ AP+A AFF SR+ + E
Sbjct 294 ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYE 350
Query 332 LTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
L Y+GAI+ D F+ + +LN++++AY + ++ P PQRQ+ Q
Sbjct 351 LRYNGAIRFDSTLSGFETIMKVLNQNLNAY---------QHQEDGMMNISPKPQRQRGQ 400
>sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1
Length=449
Score = 189 bits (479), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 135/359 (38%), Positives = 192/359 (53%), Gaps = 42/359 (12%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E F GQGVPI + GY+ R RR + DG ++L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTL 168
YFYYLGTGP A YG + +G+ WVA+ A +NTP D I R+P+++ A + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVFWVASNQADINTPAD-IVDRDPSSDEAIPTRFPPGTVL 182
Query 169 PKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRL 228
P+G+Y EGS G S +SRS+SR+ N S SR NS R ++ G + D
Sbjct 183 PQGYYIEGS-GRSAPNSRSTSRA-PNRAPSAGSRSRANSGNRTSTPG-------VTPDMA 233
Query 229 NQLESKVSGK--GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQ 282
+Q+ S V K + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q
Sbjct 234 DQIASLVLAKLGKDATKPQQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ 293
Query 283 TQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTW 331
NFG ++++ GT +P +A+ AP+A AFF SR+ + E
Sbjct 294 ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYE 350
Query 332 LTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
L Y+GAI+ D F+ + +LN++++AY + ++ P PQRQ+ Q
Sbjct 351 LRYNGAIRFDSTLSGFETIMKVLNQNLNAY---------QHQEDGMMNISPKPQRQRGQ 400
>sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate
NC99) OX=202496 GN=N PE=3 SV=1
Length=446
Score = 188 bits (478), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 208/393 (53%), Gaps = 48/393 (12%)
Query 22 TDSTDNNQNGGRNGARPKQ---RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGVP 74
+D + N Q GR A+PKQ +P G +P SWF+ +TQ K +E +F GQGVP
Sbjct 30 SDQSSNFQTRGRR-AQPKQTATSQPAGGNVVP--YYSWFSGITQFQKGKEFQFAEGQGVP 86
Query 75 INTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
I + GY+ R RR + DG ++L PRWYFYYLGTGP A YG N +G+ W
Sbjct 87 IAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKAQYGTNIDGVFW 146
Query 134 VATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 192
VA + A +NTP D + R+P+++ A + P GT LP+G+Y EGS G + S+
Sbjct 147 VANKQADVNTPADVV-DRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSVPNSRSTSRA 203
Query 193 GNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSA 252
+ +S +R NS R + G + +A D++ L GK + Q VTK++A
Sbjct 204 SSRASSAGSRNRSNSGTRTPTSGVTSDMA----DQIASLVLAKLGK-DATKPQQVTKQTA 258
Query 253 AEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF 308
E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +A+
Sbjct 259 KEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGAEMLKLGTSDPQFPILAEL 315
Query 309 APSASAFFGMSRIGMEVTP--SGTW---------LTYHGAIKLDDKDPQFKDNVILLNKH 357
AP+A AFF SR+ + SG + L Y+GAI+ D P F+ + +LN++
Sbjct 316 APTAGAFFFGSRLELAKVQNLSGNFDEPQKDVYELRYNGAIRFDSTLPGFETIMKVLNEN 375
Query 358 IDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
++AY+ ++ P PQRQ+ Q
Sbjct 376 LNAYQ----------QQDDGTNMSPKPQRQRGQ 398
>sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain
NJ) OX=231433 GN=N PE=3 SV=1
Length=454
Score = 187 bits (474), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 171/326 (52%), Gaps = 27/326 (8%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E +F GQGVPI +Q GY+ R RR + DG+ K+L PRW
Sbjct 67 SWFSGITQFQKGKEFQFADGQGVPIANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRW 126
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLP 169
YFYYLGTGP A YG + EG+ WVA A + I R+P+++ A + GT LP
Sbjct 127 YFYYLGTGPHAGAIYGDSIEGVFWVANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLP 186
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLN 229
+GFY EGS + AS S N SS PA +A L+L +L
Sbjct 187 QGFYVEGSGRSAPASRSGSRSQSRGPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLG 246
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQG 285
+ GQ +Q VTK+SA E + KPRQKRT KQ V Q FG+RGP Q
Sbjct 247 K------DAGQPKQ---VTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ--- 294
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHG 336
NFG ++++ GT +P +A+ AP+ AFF S++ + E T L Y G
Sbjct 295 NFGGSEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSG 354
Query 337 AIKLDDKDPQFKDNVILLNKHIDAYK 362
AI+ D P F+ + +LN++++AY+
Sbjct 355 AIRFDSTLPGFETIMKVLNENLNAYQ 380
>sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=N PE=3 SV=1
Length=448
Score = 180 bits (456), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/394 (36%), Positives = 202/394 (51%), Gaps = 49/394 (12%)
Query 22 TDSTDNNQNGGRNGARPKQRRPQGLPNN-----TASWFTALTQHGK-EELRFPRGQGVPI 75
+D + N Q GR A+PKQ LP+ SWF+ +TQ K +E F GQGVPI
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQLPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPI 88
Query 76 NTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWV 134
+ GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+ WV
Sbjct 89 APGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWV 148
Query 135 ATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
A+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 149 ASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSRAS 205
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK--GQQQQGQTVTKKS 251
+ +S SR NS R + G + D +Q+ S V K + Q VTK++
Sbjct 206 SRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDATKPQQVTKQT 258
Query 252 AAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +A+
Sbjct 259 AKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAE 315
Query 308 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNK 356
AP+A AFF SR+ + E L Y+GAI+ D F+ + +LN+
Sbjct 316 LAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNE 375
Query 357 HIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
+++AY+ ++ P PQRQ+ Q
Sbjct 376 NLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=N PE=1 SV=1
Length=448
Score = 180 bits (456), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 141/394 (36%), Positives = 202/394 (51%), Gaps = 49/394 (12%)
Query 22 TDSTDNNQNGGRNGARPKQRRPQGLPNN-----TASWFTALTQHGK-EELRFPRGQGVPI 75
+D + N Q GR A+PKQ LP+ SWF+ +TQ K +E F GQGVPI
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQLPSGGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPI 88
Query 76 NTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWV 134
+ GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+ WV
Sbjct 89 APGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWV 148
Query 135 ATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
A+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 149 ASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSRAS 205
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK--GQQQQGQTVTKKS 251
+ +S SR NS R + G + D +Q+ S V K + Q VTK++
Sbjct 206 SRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDATKPQQVTKQT 258
Query 252 AAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +A+
Sbjct 259 AKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAE 315
Query 308 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNK 356
AP+A AFF SR+ + E L Y+GAI+ D F+ + +LN+
Sbjct 316 LAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNE 375
Query 357 HIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
+++AY+ ++ P PQRQ+ Q
Sbjct 376 NLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1
Length=448
Score = 179 bits (453), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 206/396 (52%), Gaps = 53/396 (13%)
Query 22 TDSTDNNQNGGRNGARPKQ----RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGV 73
+D + N Q GR A+PKQ ++P G +P SWF+ +TQ K +E F GQGV
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVP--YYSWFSGITQFQKGKEFEFAEGQGV 86
Query 74 PINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
PI + GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146
Query 133 WVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 191
WVA+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 147 WVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSR 203
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQG--QTVTK 249
+ +S SR NS R + G + D +Q+ S V K + Q VTK
Sbjct 204 ASSRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDAAKPQQVTK 256
Query 250 KSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
++A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +
Sbjct 257 QTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 306 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
A+ AP+A AFF SR+ + E L Y+GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
N++++AY+ ++ T P PQRQ+ Q
Sbjct 374 NENLNAYQ----------QQDGTMNMSPKPQRQRGQ 399
>sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1
Length=448
Score = 177 bits (450), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 188/359 (52%), Gaps = 43/359 (12%)
Query 52 SWFTALTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRW 109
SWF+ +TQ K +E F GQGVPI + GY+ R RR + DG ++L PRW
Sbjct 64 SWFSGITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRW 123
Query 110 YFYYLGTGPEASLPYGANKEGIVWVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTL 168
YFYYLGTGP A YG + +G+ WVA+ A +NTP D I R+P+++ A + P GT L
Sbjct 124 YFYYLGTGPHAKDQYGTDIDGVYWVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVL 182
Query 169 PKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRL 228
P+G+Y EGS G A + S+ + +S SR NS R + G + D
Sbjct 183 PQGYYIEGS--GRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSG-------VTPDMA 233
Query 229 NQLESKVSGKGQQQQG--QTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQ 282
+Q+ S V K + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q
Sbjct 234 DQIASLVLAKLGKDAAKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ 293
Query 283 TQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTW 331
NFG ++++ GT +P +A+ AP+A AFF SR+ + E
Sbjct 294 ---NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYE 350
Query 332 LTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
L Y+GAI+ D F+ + +LN++++AY+ ++ T P PQRQ+ Q
Sbjct 351 LRYNGAIRFDSTLSGFETIMKVLNENLNAYQ----------QQDGTMNMSPKPQRQRGQ 399
>sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1
Length=448
Score = 177 bits (449), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/394 (36%), Positives = 202/394 (51%), Gaps = 49/394 (12%)
Query 22 TDSTDNNQNGGRNGARPKQRRPQGLPN--NTA---SWFTALTQHGK-EELRFPRGQGVPI 75
+D + N Q GR A+PKQ P+ N SWF+ +TQ K +E F GQGVPI
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQQPSAGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPI 88
Query 76 NTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWV 134
+ GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+ WV
Sbjct 89 APGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVFWV 148
Query 135 ATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
A+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 149 ASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSRTS 205
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK--GQQQQGQTVTKKS 251
+ +S SR NS R + G + D +Q+ S V K + Q VTK++
Sbjct 206 SRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDATKPQQVTKQT 258
Query 252 AAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +A+
Sbjct 259 AKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAE 315
Query 308 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNK 356
AP+A AFF SR+ + E L Y+GAI+ D F+ + +LN+
Sbjct 316 LAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNE 375
Query 357 HIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
+++AY+ ++ P PQRQ+ Q
Sbjct 376 NLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=N PE=3 SV=1
Length=448
Score = 177 bits (448), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/396 (36%), Positives = 205/396 (52%), Gaps = 53/396 (13%)
Query 22 TDSTDNNQNGGRNGARPKQ----RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGV 73
+D + N Q GR A+PKQ ++P G +P SWF+ +TQ K +E F GQGV
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVP--YYSWFSGITQFQKGKEFEFAEGQGV 86
Query 74 PINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
PI + GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 133 WVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 191
WVA+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 147 WVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSR 203
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK--GQQQQGQTVTK 249
+ +S SR NS R + G + D +Q+ S V K + Q VTK
Sbjct 204 ASSRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDATKPQQVTK 256
Query 250 KSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
++A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +
Sbjct 257 QTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 306 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
A+ AP+A AFF SR+ + E L Y+GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
N++++AY+ ++ P PQRQ+ Q
Sbjct 374 NENLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=N PE=3 SV=1
Length=448
Score = 176 bits (447), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/396 (36%), Positives = 207/396 (52%), Gaps = 53/396 (13%)
Query 22 TDSTDNNQNGGRNGARPKQ----RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGV 73
+D + N Q GR A+PKQ ++P G +P SWF+ +TQ K +E F GQGV
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVP--YYSWFSGITQFQKGKEFEFAEGQGV 86
Query 74 PINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
PI + GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 133 WVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGS-RGGSQASSRSSSR 190
WVA+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS R + S S +
Sbjct 147 WVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSAPNSRSTSRAS 205
Query 191 SRGNSRNSTPGSSRGN-SPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTK 249
SR +S S + GN +P + +A L+L +L + +K Q VTK
Sbjct 206 SRASSAGSRSRADSGNRTPTSGVTPDMADQIASLVLAKLGKDATKP---------QQVTK 256
Query 250 KSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
++A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +
Sbjct 257 QTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 306 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
A+ AP+A AFF SR+ + E L Y+GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
N++++AY+ ++ P PQRQ+ Q
Sbjct 374 NENLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain
F15) OX=11129 GN=N PE=3 SV=1
Length=448
Score = 176 bits (446), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 141/394 (36%), Positives = 205/394 (52%), Gaps = 49/394 (12%)
Query 22 TDSTDNNQNGGRNGARPKQ----RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGV 73
+D + N Q GR A+PKQ ++P G +P SWF+ +TQ K +E F GQGV
Sbjct 30 SDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVP--YYSWFSGITQFQKGKEFEFAEGQGV 86
Query 74 PINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
PI + GY+ R RR + DG ++L PRWYFYYLGTGP A YG + +G+
Sbjct 87 PIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVF 146
Query 133 WVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 191
WVA+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 147 WVASNQADVNTPAD-ILDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSR 203
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKS 251
+ +S SR NS R + G +A ++ + K + K QQ VTK++
Sbjct 204 ASSRASSAGSRSRANSGNRTPTSGVTPDMADQIVSLVLAKLGKDATKPQQ-----VTKQT 258
Query 252 AAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +A+
Sbjct 259 AKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPILAE 315
Query 308 FAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNK 356
AP+A AFF SR+ + E L Y+GAI+ D F+ + +LN+
Sbjct 316 LAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTLSGFETIMKVLNE 375
Query 357 HIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQ 390
+++AY+ ++ P PQRQ+ Q
Sbjct 376 NLNAYQ----------QQDGMMNMSPKPQRQRGQ 399
>sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43
OX=31631 GN=N PE=1 SV=1
Length=448
Score = 170 bits (431), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 192/368 (52%), Gaps = 43/368 (12%)
Query 22 TDSTDNNQNGGRNGARPKQ----RRPQG---LPNNTASWFTALTQHGK-EELRFPRGQGV 73
+D N Q GR A+PKQ ++P G +P SWF+ +TQ K +E F GQG
Sbjct 30 SDQVRNVQTRGRR-AQPKQTATSQQPSGGNVVP--YYSWFSGITQFQKGKEFEFVEGQGP 86
Query 74 PINTNSGPDDQIGYYRRATR-RVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
PI + GY+ R R + DG ++L PRWYFYYLGTGP A YG + +G+
Sbjct 87 PIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDIDGVY 146
Query 133 WVATEGA-LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 191
WVA+ A +NTP D I R+P+++ A + P GT LP+G+Y EGS G A + S+
Sbjct 147 WVASNQADVNTPAD-IVDRDPSSDEAIPTRFPPGTVLPQGYYIEGS--GRSAPNSRSTSR 203
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK--GQQQQGQTVTK 249
+ +S SR NS R + G + D +Q+ S V K + Q VTK
Sbjct 204 TSSRASSAGSRSRANSGNRTPTSG-------VTPDMADQIASLVLAKLGKDATKPQQVTK 256
Query 250 KSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
+A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++ GT +P +
Sbjct 257 HTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKLGTSDPQFPIL 313
Query 306 AQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
A+ AP+A AFF SR+ + E L Y+GAI+ D F+ + +L
Sbjct 314 AELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGAIRFDSTLSGFETIMKVL 373
Query 355 NKHIDAYK 362
N++++AY+
Sbjct 374 NENLNAYQ 381
>sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain
Minnesota) OX=231430 GN=N PE=3 SV=1
Length=409
Score = 125 bits (313), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/347 (30%), Positives = 157/347 (45%), Gaps = 29/347 (8%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P G GVP N N P Q GY+RR R + G K +
Sbjct 33 ASWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPGQQHGYWRRQAR-FKPSKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSREGSRGRRSGSEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKK-----TDEAQPLPQRQK 388
F + V + ++ ID T P + K K + T + P P++Q+
Sbjct 313 FDNYVKICDQCIDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQR 359
>sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis
virus (strain Vic S) OX=231428 GN=N PE=2 SV=1
Length=409
Score = 122 bits (305), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/319 (31%), Positives = 146/319 (46%), Gaps = 24/319 (8%)
Query 51 ASWFTALTQHGKEELRFPR----GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P+ G GVP N N P Q GY+RR R G G+ K +
Sbjct 33 ASWFQAIKA---KKLNVPQPKFEGSGVPDNNNIKPSQQHGYWRRQARYKPGKSGR-KPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G N++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREGSRGRRSGAEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFP 365
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=N PE=3 SV=1
Length=409
Score = 120 bits (302), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/350 (29%), Positives = 155/350 (44%), Gaps = 30/350 (9%)
Query 51 ASWFTALT--QHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPR 108
ASWF A+ + L+F G GVP N N Q GY+RR R + G K +
Sbjct 33 ASWFQAIKAKKLNSPPLKF-EGSGVPDNENLKTSQQHGYWRRQAR-FKPSKGGRKPVPDA 90
Query 109 WYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTL 168
WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 91 WYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG--- 147
Query 169 PKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRL 228
G G + +R R + ++ +P+R S G + L+ R
Sbjct 148 -------GPDGNFRWDFIPLNRGRSGKSTAASSAASSRAPSREGSRGRRSGAEDDLIARA 200
Query 229 NQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
++ + QQ++G +TK A E + + KRT Y V Q FG R + +GNFG
Sbjct 201 AKII-----QDQQKKGARITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFG 254
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFK 348
D + +G + PS+ A SR+ ++ P G L + + DPQF
Sbjct 255 DDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVSRNDPQFD 314
Query 349 DNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
+ V + ++ +D T P K DE +P + + T T PA
Sbjct 315 NYVKICDQCVDGVGTRP----------KDDEPKPKSRSSSRPATRTSSPA 354
>sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=N PE=1 SV=2
Length=409
Score = 120 bits (300), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/389 (29%), Positives = 168/389 (43%), Gaps = 50/389 (13%)
Query 13 APRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPR--- 69
AP I GGP R P+ + ASWF A+ ++L P+
Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKA---KKLNSPQPKF 51
Query 70 -GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
G GVP N N Q GY+RR R + G G+ K + WYFYY GTGP A L +G ++
Sbjct 52 EGSGVPDNENFKTSQQHGYWRRQAR-FKPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQ 110
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
+GIVWVA +GA + + GTR+P+ L+ G G G +
Sbjct 111 DGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG----------GPDGNFRWDFIPL 160
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
+R R + ++ P+R S G + L+ R ++ + QQ++G +T
Sbjct 161 NRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-----QDQQKKGSRIT 215
Query 249 KKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF 308
K A E + + KRT Y V Q FG R + +GNFGD + +G +
Sbjct 216 KAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNL 274
Query 309 APSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTE 368
PS+ A SR+ ++ P G L + + DPQF + V + ++ +D T P +
Sbjct 275 VPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDD 334
Query 369 PKKDKKK-------KTDEAQPLPQRQKKQ 390
K K + +T P QR KK+
Sbjct 335 EPKPKSRSSSRPATRTSSPAPRQQRLKKE 363
>sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis
virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1
Length=409
Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/389 (29%), Positives = 167/389 (43%), Gaps = 50/389 (13%)
Query 13 APRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPR--- 69
AP I GGP R P+ + ASWF A+ ++L P+
Sbjct 14 APVIKLGGP-------------------RPPKVGSSGNASWFQAIKA---KKLNSPQPKF 51
Query 70 -GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
G GVP N N Q GY+RR R + G G K + WYFYY GTGP A L +G ++
Sbjct 52 EGSGVPDNENLKTSQQHGYWRRQAR-FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQ 110
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
+GIVWVA +GA + + GTR+P+ L+ G G G +
Sbjct 111 DGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG----------GPDGNFRWDFIPL 160
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
+R R + ++ P+R S G + L+ R ++ + QQ++G +T
Sbjct 161 NRGRSGRSTAASSAASSRPPSREGSRGRRSGSEDDLIARAAKII-----QDQQKKGSRIT 215
Query 249 KKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF 308
K A E + + KRT Y V Q FG R + +GNFGD + +G +
Sbjct 216 KAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNL 274
Query 309 APSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTE 368
PS+ A SR+ ++ P G L + + DPQF + V + ++ +D T P +
Sbjct 275 VPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDD 334
Query 369 PKKDKKK-------KTDEAQPLPQRQKKQ 390
K K + +T P QR KK+
Sbjct 335 EPKPKSRSSSRPATRTSSPAPRQQRLKKE 363
>sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain V18/91) OX=231427 GN=N PE=2 SV=1
Length=409
Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/324 (29%), Positives = 150/324 (46%), Gaps = 25/324 (8%)
Query 51 ASWFTALTQHGKEELRFP---RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSP 107
ASWF +L + K+ P G GVP N+N P Q GY++R R + G G K ++
Sbjct 34 ASWFQSLKE--KKRTGTPPTFEGSGVPDNSNVKPQFQHGYWKR-QHRYKPGKGGRKPVAD 90
Query 108 RWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTT 167
WYFYY GTGP L +G + + +VWV +GA + + G R+P+ L+ +G
Sbjct 91 AWYFYYTGTGPFGDLKWGDSNDDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEGG- 149
Query 168 LPKGFYAEGSRGGSQASSRSSS--RSRGNSRNSTPGSSRGNSPARMASGGGETALALLLL 225
P Y ++ SR+SS SR NSR + SSRG +R+ L+
Sbjct 150 -PDNNYRWDFIALNRGRSRNSSAVTSRENSRPGSRDSSRGRQRSRVDDD---------LI 199
Query 226 DRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQG 285
DR ++ + QQ+ G ++K+ A E +++ KR + + FG+R Q
Sbjct 200 DRAAKIIMQ-----QQKNGSRISKQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP- 253
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDP 345
NFGD +I +G + P+ A S + ++ P G + + + +DP
Sbjct 254 NFGDDKMIEEGVKDGRLTAMLNLVPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDP 313
Query 346 QFKDNVILLNKHIDAYKTFPPTEP 369
QF + + ++ +D T P +P
Sbjct 314 QFANYSKICDECVDGVGTRPKDDP 337
>sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1
Length=377
Score = 117 bits (293), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/320 (32%), Positives = 161/320 (50%), Gaps = 27/320 (8%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R R R G+ KEL+ RW+FY+LGTGP A + +G+ WVA +GA+N
Sbjct 64 DQQIGYWNRQIR-YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKIDGVFWVARDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +GTR NN + L +P F E +R S+ +SRS S+SR SRN +
Sbjct 123 KPT-TLGTRGTNNESKP---LRFDGKIPPQFQLEVNR--SRNNSRSGSQSRSVSRNRS-- 174
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQ 261
SRG + + E + + +L++L + + S +++ + + + + + K
Sbjct 175 QSRGRHHSNNQNNNVEDTI-VAVLEKLGVTDKQRSRSKPRERSDSKPRDTTPKNANKHTW 233
Query 262 KRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRI 321
K+TA K +VT +G R + NFGD DL+ G K +PQIA+ PS S+ S+
Sbjct 234 KKTAGKG-DVTTFYGARS---SSANFGDSDLVANGNAAKCYPQIAECVPSVSSIIFGSQW 289
Query 322 GMEVTPSGTWLTYHGAIKL---DDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTD 378
E +T L D K QF + IDAYK P+E KD++++
Sbjct 290 SAEEAGDQVKVTLTHTYYLPKDDAKTSQFLE-------QIDAYKR--PSEVAKDQRQRRS 340
Query 379 EAQPLPQRQKKQPTVTLLPA 398
++ ++ ++ +VTL+ A
Sbjct 341 RSKS-ADKKPEELSVTLVEA 359
>sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=N PE=3 SV=1
Length=409
Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/352 (30%), Positives = 156/352 (44%), Gaps = 34/352 (10%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF AL ++L P G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGRKSVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G +++GIVWV+ +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGYSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KCKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
F + V + ++ +D T P K DE +P + + T T PA
Sbjct 313 FDNYVKICDQCVDGVGTRP----------KDDEPRPKSRPNSRPATRTSSPA 354
>sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1
Length=409
Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/331 (30%), Positives = 149/331 (45%), Gaps = 24/331 (7%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKT 377
F + V + ++ +D T P + K K + +
Sbjct 313 FDNYVKICDQCVDGVGTRPKDDEPKPKSRSS 343
>sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1
Length=409
Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/331 (30%), Positives = 149/331 (45%), Gaps = 24/331 (7%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKT 377
F + V + ++ +D T P + K K + +
Sbjct 313 FDNYVKICDQCVDGVGTRPKDDEPKPKSRSS 343
>sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1
Length=409
Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 98/331 (30%), Positives = 149/331 (45%), Gaps = 24/331 (7%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P G GVP N N P Q GY+RR R + G G K +
Sbjct 33 ASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRGRRSDSGDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFEFTTVVPCDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKT 377
F + V + ++ +D T P + K K + +
Sbjct 313 FDNYVKICDQCVDGVGTRPKDDEPKPKSRSS 343
>sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=N PE=3 SV=1
Length=409
Score = 117 bits (293), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 104/352 (30%), Positives = 156/352 (44%), Gaps = 34/352 (10%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF AL ++L P G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-YKPGKGGKKSVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G +++GIVWV+ +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVSAKGADTKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRGRRSGAEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVIAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVSRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
F + V + ++ +D T P K DE +P + + T T PA
Sbjct 313 FDNYVKICDQCVDGVGTRP----------KDDEPRPKSRPNSRPATRTSSPA 354
>sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis
virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1
Length=409
Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/352 (30%), Positives = 156/352 (44%), Gaps = 34/352 (10%)
Query 51 ASWFTALT--QHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRR--VRGGDGKMKELS 106
ASWF A+ + +F G GVP N N Q GY+RR R V+GG K +
Sbjct 33 ASWFQAIKAKKLNSHPPKF-EGSGVPDNENLKTSQQHGYWRRQARFKPVKGG---RKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G +++GIVWVA +GA + H GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSHQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKKGSRITKVKADEMAHRRYCKRTIPPGYKVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
F + V + ++ +D T P K DE +P + + T T PA
Sbjct 313 FDNYVKICDQCVDGVGTRP----------KDDEPRPKSRSSSRPATRTSSPA 354
>sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=N PE=2 SV=1
Length=409
Score = 115 bits (287), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/319 (30%), Positives = 144/319 (45%), Gaps = 24/319 (8%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
SWF A+ ++L P G GVP N N P Q GY+RR R + G G K +
Sbjct 33 VSWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A+L +G +++GIVWVA +GA + + GTR+ + L+ G
Sbjct 89 DAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAARII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ + P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFEFTTVVPRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFP 365
F + V + ++ +D T P
Sbjct 313 FDNYVKICDQCVDGVGTRP 331
>sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain
Indiana) OX=231429 GN=N PE=3 SV=1
Length=409
Score = 114 bits (285), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 144/320 (45%), Gaps = 24/320 (8%)
Query 50 TASWFTALTQHGKEELRFPR----GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKEL 105
+ SWF A+ ++L P+ G GVP N N Q GY+RR R + G K +
Sbjct 32 SVSWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQAR-FKSSRGGRKPV 87
Query 106 SPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQG 165
WYFYY GTGP A L +G ++ GIVWVA +GA K + GTR+P+ L+ G
Sbjct 88 PDAWYFYYTGTGPAADLQWGDSQAGIVWVAAKGADVKSKSNQGTRDPDKFDQYPLRFSDG 147
Query 166 TTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLL 225
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ----------GPDGNFRWDFIPLNRGRSGRSTAVSSAASSRAPSREGSRGRRSGAEDDLI 197
Query 226 DRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQG 285
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +G
Sbjct 198 ARAAKII-----QDQQKKGSRITKAKAEEMAHRRYCKRTVPPGYKVEQVFGPR-TKGKEG 251
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDP 345
NFGD + +G + PS+ A S++ ++ P G L + + DP
Sbjct 252 NFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFASKLTPKLQPDGLHLKFEFTTVVPRDDP 311
Query 346 QFKDNVILLNKHIDAYKTFP 365
QF + V + ++ +D T P
Sbjct 312 QFDNYVSICDQCVDGVGTRP 331
>sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain
NC95) OX=231431 GN=N PE=3 SV=1
Length=409
Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/319 (30%), Positives = 143/319 (45%), Gaps = 24/319 (8%)
Query 51 ASWFTALTQHGKEELRFPR----GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF ++ ++L P+ G GVP N N Q GY+RR R + G G K +
Sbjct 33 ASWFQSIKA---KKLNSPQPKFEGSGVPDNENIKTSQQHGYWRRQAR-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+ L+
Sbjct 89 DAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRF---- 144
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
S GG ++ R R+ ++ + +R S G D
Sbjct 145 ----------SDGGPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRDGSRGRRSGSED 194
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
L +K+ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 195 DLIARAAKII-QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVFGPRT-KGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFEFTTVVPRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFP 365
F + V + ++ +D T P
Sbjct 313 FDNYVTICDQCVDGIGTRP 331
>sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=N PE=3 SV=1
Length=409
Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 155/352 (44%), Gaps = 34/352 (10%)
Query 51 ASWFTALTQHGKEELRFPR----GQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ ++L P+ G GVP N N Q GY+RR R + G K +
Sbjct 33 ASWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQLR-FKPSKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGT 166
WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+ L+ G
Sbjct 89 DAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKFDQYPLRFSDG- 147
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLD 226
G G + +R R + ++ +P+R S G + L+
Sbjct 148 ---------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRGRRSGSEGDLIA 198
Query 227 RLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
R ++ + QQ++G +TK A E + + KRT Y V Q FG R + +GN
Sbjct 199 RAAKII-----QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYKVDQVFGPR-TKGKEGN 252
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD + +G + PS+ A SR+ ++ P G L + DPQ
Sbjct 253 FGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKIEFTTVVSRDDPQ 312
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
F + V + ++ +D T P K DE +P + + T T PA
Sbjct 313 FDNYVKICDQCVDGVGTRP----------KDDEPRPKSRSSSRPATRTSSPA 354
>sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=N PE=3 SV=1
Length=409
Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 145/323 (45%), Gaps = 32/323 (10%)
Query 51 ASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELS 106
ASWF A+ + +L P G GVP N N Q GY+RR + G G K +
Sbjct 33 ASWFQAIKAN---KLNIPPPKFEGSGVPDNENLKSSQQHGYWRRQAT-FKPGKGGRKPVP 88
Query 107 PRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQL---- 162
WYFYY GTGP A+L +G +++GIVWVA +GA + + GTR+ + L+
Sbjct 89 DAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKFDQYPLRFSDGG 148
Query 163 PQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALAL 222
P G G R G ++ S++ SR SR + G G+ +A A
Sbjct 149 PDGNFRWDFIPLNGGRSGRSTAASSAASSRAPSREVSRGRRSGSEDDLIARA------AR 202
Query 223 LLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQ 282
++ D QQ++G +TK A E + + KRT Y V Q FG R +
Sbjct 203 IIQD-------------QQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVFGPRT-KG 248
Query 283 TQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDD 342
+GNFGD + +G + PS+ A SR+ ++ P G L + +
Sbjct 249 KEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFEFTTVVPR 308
Query 343 KDPQFKDNVILLNKHIDAYKTFP 365
DPQF + V + ++ +D T P
Sbjct 309 DDPQFDNYVKICDQCVDGVGTRP 331
>sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain
K378) OX=33732 GN=N PE=3 SV=1
Length=382
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/245 (34%), Positives = 127/245 (52%), Gaps = 27/245 (11%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R +R R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N
Sbjct 64 DQQIGYWNRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +G R NN + L +P F E ++ + S S SRS+ +R+ + G
Sbjct 123 KPTT-LGNRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQSRG 178
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASK---- 257
+ N+ + ++ +L L +L V + QQQ+ ++ +K+ + ++
Sbjct 179 RQQSNNKK-------DDSVEQAVLAALKKL--GVDTEKQQQRSRSKSKERSNSKTRDTTP 229
Query 258 ----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
K KRTA K +VT+ +G R + NFGD DL+ G KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVS 285
Query 314 A-FFG 317
+ FG
Sbjct 286 SILFG 290
>sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain FS772/70) OX=11150 GN=N PE=1
SV=1
Length=382
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 97/325 (30%), Positives = 162/325 (50%), Gaps = 23/325 (7%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +G+R NN + L +P F E ++ + SRS SRSR +R+ + G
Sbjct 123 KPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRG 178
Query 202 SSRGNSPA-RMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPR 260
+ N+ AL L +D Q + S +++ + T+ + + K
Sbjct 179 RQQSNNKKDDSVEQAVLAALKKLGVDTEKQQQRSCS--KSKERSNSKTRDTTPKNENKHT 236
Query 261 QKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSR 320
KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S+ S
Sbjct 237 WKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSY 292
Query 321 IGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA 380
+ +T+ L DP+ + + + I+AY P+E K+++K+ +
Sbjct 293 WTSKEDGDQIEVTFTHKYHLPKDDPKTEQFL----QQINAYAR--PSEVAKEQRKRKSRS 346
Query 381 QPLPQRQKKQPTVTLLPAADMDDFS 405
+ + +++ ++P A +++++
Sbjct 347 KSAERSEQE-----VVPDALIENYT 366
>sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=N PE=3 SV=1
Length=382
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 120/245 (49%), Gaps = 27/245 (11%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R R R G+ K+L RW+FYYLGTGP A + +G+VWVA EGA+
Sbjct 64 DQQIGYWNRQIR-YRMVKGQRKDLPERWFFYYLGTGPHADAKFKQKLDGVVWVAKEGAMT 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +GTR NN + L +P F E ++ + SRS S S++ T
Sbjct 123 KPTT-LGTRGTNNESKA---LKFDVKVPSEFQLEVNQSRDNSRSRSQS----RSQSRTRA 174
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASK---- 257
SRG + L L +L V + QQQ+ ++ +K+ + ++
Sbjct 175 QSRGRQQSNNKKDDSVEQAVLAALKKLG-----VDTEKQQQRARSKSKERSNSKTRDTTP 229
Query 258 ----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
K KRTA K +VT+ +G R + NFGD DL+ G KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNSAKHYPQLAECVPSVS 285
Query 314 A-FFG 317
+ FG
Sbjct 286 SILFG 290
>sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus
(strain 86/137004 / isolate British) OX=33736 GN=N
PE=3 SV=1
Length=382
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (53%), Gaps = 11/237 (5%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +G+R NN + L +P F E ++ + SRS SRSR +R+ + G
Sbjct 123 KPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRG 178
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQ 261
+ N+ + S AL L + + + S +++ + T+ + + K
Sbjct 179 RQQSNN-KKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKNENKHTW 237
Query 262 KRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASA-FFG 317
KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S+ FG
Sbjct 238 KRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSILFG 290
>sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus
(strain RM4) OX=11148 GN=N PE=3 SV=1
Length=382
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 125/237 (53%), Gaps = 11/237 (5%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +G+R NN + L +P F E ++ + SRS SRSR +R+ + G
Sbjct 123 KPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRG 178
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQ 261
+ N+ + S AL L + + + S +++ + T+ + + K
Sbjct 179 RQQSNN-KKDDSVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTPKNENKHTW 237
Query 262 KRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASA-FFG 317
KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S+ FG
Sbjct 238 KRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVSSILFG 290
>sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain Purdue) OX=11151 GN=N PE=1
SV=2
Length=382
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 152/303 (50%), Gaps = 32/303 (11%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N
Sbjct 64 DQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVWVAKDGAMN 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +G+R NN + L +P F E ++ + SRS SRSR +R+ + G
Sbjct 123 KPT-TLGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRSRNRSQSRG 178
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASK---- 257
+ N+ + ++ +L L +L V + QQQ+ ++ +K+ + ++
Sbjct 179 RQQFNNKK-------DDSVEQAVLAALKKL--GVDTEKQQQRSRSKSKERSNSKTRDTTP 229
Query 258 ----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
K KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAECVPSVS 285
Query 314 AFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK 373
+ S + +T+ L DP K L + I+AY P+E K++
Sbjct 286 SILFGSYWTSKEDGDQIEVTFTHKYHLPKDDP--KTGQFL--QQINAYAR--PSEVAKEQ 339
Query 374 KKK 376
+K+
Sbjct 340 RKR 342
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=N PE=1 SV=1
Length=394
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/326 (27%), Positives = 138/326 (42%), Gaps = 40/326 (12%)
Query 80 GPDDQIGYYRRATR-RVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEG 138
G D QIGY+ R R+R GD +L W+FY+LGTGP + LP+ +G+ WVA +G
Sbjct 47 GKDQQIGYWVEQQRWRMRRGD--RVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDG 104
Query 139 ALNTPKDHIGTRN--------------PNNNAATVLQLPQGTTLPKGFYAEGSRGGSQAS 184
A P +G R PNN P + + G + S+ +
Sbjct 105 AKTQPT-GLGVRKSSEKPLVPKFKNKLPNNVEIVEPTTPNNSRANSRSRSRGGQSNSRGN 163
Query 185 SRS-SSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQ 243
S++ +SR SRN + + RG+ + AL L + KG+ Q
Sbjct 164 SQNRGDKSRNQSRNRSQSNDRGSDSRDDLVAAVKKALEDLGV-------GAAKPKGKTQS 216
Query 244 GQTVTKKSA-------AEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQG 296
G+ K + AEA KP +RT + +V FG RG + NFG + + +G
Sbjct 217 GKNTPKNKSRSGSVQRAEAKDKPEWRRTPSGDESVEVCFGPRGGTR---NFGSSEFVAKG 273
Query 297 TDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNK 356
+ + Q A P A+A + + G +TY + + P+ N+ +
Sbjct 274 VNAPGYAQAASLVPGAAALLFGGNVATKEMADGVEITYTYKMLV----PKDDKNLEIFLA 329
Query 357 HIDAYKTFPPTEPKKDKKKKTDEAQP 382
+DAYK P +K K+ +T +P
Sbjct 330 QVDAYKLGDPKPQRKVKRSRTPTPKP 355
>sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=N PE=1 SV=1
Length=441
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 97/348 (28%), Positives = 145/348 (42%), Gaps = 69/348 (20%)
Query 75 INTNSG-PDDQIGYYRRATR-RVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
+ TN G D QIGY+ R R+R G+ E W+FYYLGTGP L Y EG+
Sbjct 39 VPTNKGNKDQQIGYWNEQIRWRMRRGE--RIEQPSNWHFYYLGTGPHGDLRYRTRTEGVF 96
Query 133 WVATEGALNTPKDHIGTRNPNNNAA---------TVLQLPQGTTLPKGFYAEGSR--GGS 181
WVA EGA P + +G R + +V+++ + T P SR G
Sbjct 97 WVAKEGAKTEPTN-LGVRKASEKPIIPKFSQQLPSVVEIVEPNTPPASRANSRSRSRGNG 155
Query 182 QASSRSSSRSRGNSRNSTPGSSRGNSPARMASG-------------------------GG 216
SRS S +RGN+++ +RGN+ R AS GG
Sbjct 156 NNRSRSPSNNRGNNQSRGNSQNRGNNQGRGASQNRGGNNNNNNKSRNQSNNRNQSNDRGG 215
Query 217 ETALALLLLDRLNQLESKVSGKGQQQQ--------------GQTVTKKSAAEASKK---- 258
T+ L+ + L+S G+ + G+ KK+ + A+ K
Sbjct 216 VTSRDDLVAAVKDALKSLGIGENPDRHKQQQKPKQEKSDNSGKNTPKKNKSRATSKERDL 275
Query 259 ---PRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAF 315
P +R + +V FG RG + NFGD + + +G D + QIA AP+ +A
Sbjct 276 KDIPEWRRIPKGENSVAACFGPRGGFK---NFGDAEFVEKGVDASGYAQIASLAPNVAAL 332
Query 316 FGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKT 363
+ + +TY+ + + DP NV LL +DA+KT
Sbjct 333 LFGGNVAVRELADSYEITYNYKMTVPKSDP----NVELLVSQVDAFKT 376
>sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=N PE=3 SV=1
Length=381
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 78/237 (33%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D QIGY+ R TR R G+ K L +W+FYYLGTGP A + +G+VWVA ++
Sbjct 64 DQQIGYWNRQTR-YRMVKGRRKNLPEKWFFYYLGTGPHADAKFKQKLDGVVWVARGDSMT 122
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +GTR NN + L +P F+ E ++ + SRS SRS+ +R+ + G
Sbjct 123 KPTT-LGTRGTNNESKA---LKFDVKVPSEFHLEVNQLRDNSRSRSQSRSQSRNRSQSRG 178
Query 202 SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQ 261
N+ + + LA L ++ + + S +++ + T+ + + K
Sbjct 179 RQLSNN--KKDDNVEQAVLAALKKLGVDTEKQQRSRSKSKERSSSKTRDTTPKNENKHTW 236
Query 262 KRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASA-FFG 317
KRTA K +VT+ +G R + NFGD DL+ G KH+PQ+A+ PS S+ FG
Sbjct 237 KRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVSSILFG 289
>sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E
OX=11137 GN=N PE=1 SV=2
Length=389
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 126/302 (42%), Gaps = 38/302 (13%)
Query 73 VPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIV 132
VPIN + IGY+ +R R GK +LSP+ +FYYLGTGP + EG+V
Sbjct 44 VPINKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERVEGVV 101
Query 133 WVATEGALNTPKDHIGTRNPNNNAATVL---QLPQGTTLPKGFYAEGSRG----GSQASS 185
WVA +GA P + G R N+ +LP G T+ SR S++ S
Sbjct 102 WVAVDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVTV---VEEPDSRAPSRSQSRSQS 157
Query 186 RSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKG------ 239
R S+ SRN P S R ++ AL L D+ + + K + G
Sbjct 158 RGRGESKPQSRN--PSSDRNHNSQDDIMKAVAAALKSLGFDKPQEKDKKSAKTGTPKPSR 215
Query 240 ------QQQQGQTVTKKSAAEASK------KPRQKRTATKQY--NVTQAFGRRGPEQTQG 285
Q +++ + ++E + KPR KR NVTQ F GP
Sbjct 216 NQSPASSQTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDVTSNVTQCF---GPRDLDH 272
Query 286 NFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDP 345
NFG ++ G K +PQ A+ PS +A S I + + + LT+ + + P
Sbjct 273 NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESGNTVVLTFTTRVTVPKDHP 332
Query 346 QF 347
Sbjct 333 HL 334
>sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63
OX=277944 GN=N PE=1 SV=1
Length=377
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/268 (27%), Positives = 117/268 (44%), Gaps = 26/268 (10%)
Query 82 DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALN 141
D+QIGY+ R R G+ +L P+ +FYYLGTGP L + +G+VWVA EGA
Sbjct 50 DEQIGYWN-VQERWRMRRGQRVDLPPKVHFYYLGTGPHKDLKFRQRSDGVVWVAKEGA-K 107
Query 142 TPKDHIGTRNPNNNAAT---VLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNS 198
T +G R N + LP ++ + + + + S + + SR +SR++
Sbjct 108 TVNTSLGNRKRNQKPLEPKFSIALPPELSVVEFEDRSNNSSRASSRSSTRNNSRDSSRST 167
Query 199 TPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKK 258
+ SR S + +S A+ L L K G Q + + + S + K
Sbjct 168 SRQQSRTRSDSNQSSSDLVAAVTLAL---------KNLGFDNQSKSPSSSGTSTPKKPNK 218
Query 259 PRQKRTATKQYNVTQAFGRRGP---EQTQGNFGDQD---------LIRQGTDYKHWPQIA 306
P + A K + + +R P E FG +D L++ G D K +PQ+A
Sbjct 219 PLSQPRADKPSQLKKPRWKRVPTREENVIQCFGPRDFNHNMGDSDLVQNGVDAKGFPQLA 278
Query 307 QFAPSASAFFGMSRIGMEVTPSGTWLTY 334
+ P+ +A F S + + +TY
Sbjct 279 ELIPNQAALFFDSEVSTDEVGDNVQITY 306
>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens OX=9606 GN=ANK1
PE=1 SV=3
Length=1881
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (43%), Gaps = 6/103 (6%)
Query 136 TEGALNTPKDHIGTRNPNNNAATVLQL--PQGTTLPKGFYAEGSRGGSQASSRSSSR--S 191
T+G + P HI RN + A VL P L K + + + +
Sbjct 168 TKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLN 227
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
RG S N TP G +P +AS G + LLLDR Q+E+K
Sbjct 228 RGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETK 268
>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus OX=10090 GN=Ank1
PE=1 SV=2
Length=1862
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (43%), Gaps = 6/103 (6%)
Query 136 TEGALNTPKDHIGTRNPNNNAATVLQL--PQGTTLPKGFYAEGSRGGSQASSRSSSR--S 191
T+G + P HI RN + A VL P L K + + + +
Sbjct 164 TKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLN 223
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
RG S N TP G +P +AS G + LLLDR Q+E++
Sbjct 224 RGASVNFTP--QNGITPLHIASRRGNVIMVRLLLDRGAQIETR 264
>sp|P11278|PLYP_YERPS Periplasmic pectate lyase OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) OX=273123 GN=pelY
PE=3 SV=2
Length=572
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 24/56 (43%), Gaps = 3/56 (5%)
Query 238 KGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGP---EQTQGNFGDQ 290
K QQ QG V K A+ PR +T Y TQA R P T FGD+
Sbjct 240 KYQQDQGALVWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDR 295
>sp|M1W0Y0|EASA_CLAP2 Probable inactive dehydrogenase easA OS=Claviceps
purpurea (strain 20.1) OX=1111077 GN=easA PE=3 SV=1
Length=380
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/45 (36%), Positives = 25/45 (56%), Gaps = 3/45 (7%)
Query 317 GMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
G R+GM+++P W T+ G +DD PQF+ + L + AY
Sbjct 216 GHDRVGMKLSP---WSTFQGMGTMDDLVPQFEHFITCLREMDIAY 257
>sp|Q6ZXC1|EASA_CLAPU Probable inactive dehydrogenase easA OS=Claviceps
purpurea OX=5111 GN=easA PE=3 SV=2
Length=380
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/45 (36%), Positives = 25/45 (56%), Gaps = 3/45 (7%)
Query 317 GMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
G R+GM+++P W T+ G +DD PQF+ + L + AY
Sbjct 216 GHDRVGMKLSP---WSTFQGMGTMDDLVPQFEHFITCLREMDIAY 257
Lambda K H a alpha
0.310 0.128 0.376 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 41403535474
Results from round 2
Query= sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory syn... 495 6e-174
sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004 OX... 491 3e-172
sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442... 486 4e-170
sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005 OX... 479 2e-167
sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory sy... 476 4e-166
sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain 1... 423 6e-145
sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76... 421 3e-144
sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain ... 417 1e-142
sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain ... 417 2e-142
sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain 3... 417 2e-142
sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain 681... 413 9e-141
sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain ... 411 2e-140
sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain S... 409 2e-139
sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain NJ)... 406 4e-138
sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain 2... 402 7e-137
sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1 (iso... 400 3e-136
sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating en... 399 1e-135
sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1 (iso... 398 2e-135
sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1 (iso... 398 2e-135
sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain Q... 398 2e-135
sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain M... 398 2e-135
sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating en... 397 7e-135
sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain ... 396 1e-134
sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain ... 396 2e-134
sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain ... 396 2e-134
sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain ... 396 3e-134
sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain F... 396 3e-134
sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate... 395 5e-134
sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain ... 394 1e-133
sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43 OX=3... 388 2e-131
sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain ... 381 4e-129
sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis... 381 5e-129
sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis ... 379 2e-128
sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis... 379 2e-128
sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis... 379 2e-128
sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis ... 379 2e-128
sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis... 379 2e-128
sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis... 379 2e-128
sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis ... 379 2e-128
sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis... 378 7e-128
sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis... 376 4e-127
sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis... 376 5e-127
sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain ... 375 1e-126
sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis ... 374 2e-126
sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis... 374 3e-126
sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain ... 370 1e-124
sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694... 351 4e-117
sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory syn... 347 8e-116
sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694... 348 3e-115
sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005 OX... 337 8e-112
sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis... 337 9e-112
sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694... 337 1e-111
sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain ... 305 6e-100
sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastr... 303 7e-99
sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronav... 302 2e-98
sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain ... 301 3e-98
sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronav... 300 9e-98
sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain F... 298 4e-97
sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastr... 297 9e-97
sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain ... 289 1e-93
sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 OX... 275 7e-88
sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea v... 251 8e-78
sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E OX=1... 244 5e-76
sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63 OX=2... 232 2e-71
Sequences not found previously or not previously below threshold:
sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoc... 44.8 0.002
sp|Q318P8|IF2_PROM9 Translation initiation factor IF-2 OS=Prochlo... 41.3 0.016
sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster O... 40.5 0.030
sp|Q11HD9|TRMFO_CHESB Methylenetetrahydrofolate--tRNA-(uracil-5-)... 39.8 0.041
sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homo... 39.4 0.065
sp|Q52EB3|ATG1_PYRO7 Serine/threonine-protein kinase ATG1 OS=Pyri... 38.6 0.12
sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thali... 38.6 0.14
sp|P49797|RGS3_RAT Regulator of G-protein signaling 3 OS=Rattus n... 37.8 0.19
sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabdit... 37.8 0.22
sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo ... 37.1 0.30
sp|Q9JM61|THSD1_MOUSE Thrombospondin type-1 domain-containing pro... 37.5 0.30
sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein L... 37.1 0.31
sp|Q5UPJ3|YL116_MIMIV Uncharacterized protein L116 OS=Acanthamoeb... 36.7 0.39
sp|A3CQ18|IF2_STRSV Translation initiation factor IF-2 OS=Strepto... 36.7 0.47
sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlo... 35.9 0.78
sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlo... 35.9 0.78
sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilac... 35.5 1.2
sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN doma... 34.8 1.8
sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606 GN=... 34.0 3.2
sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergil... 33.6 3.3
sp|O35892|SP100_MOUSE Nuclear autoantigen Sp-100 OS=Mus musculus ... 33.6 4.3
sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=D... 33.6 4.6
sp|Q3U3E2|F117B_MOUSE Protein FAM117B OS=Mus musculus OX=10090 GN... 32.8 6.1
sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyosteli... 32.5 8.6
sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus... 32.5 9.4
sp|F1QZE9|TMC2B_DANRE Transmembrane channel-like protein 2-B OS=D... 32.5 9.9
>sp|P59595|NCAP_SARS Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus OX=694009 GN=N PE=1 SV=1
Length=422
Score = 495 bits (1275), Expect = 6e-174, Method: Composition-based stats.
Identities = 422/422 (100%), Positives = 422/422 (100%), Gaps = 0/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG
Sbjct 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ
Sbjct 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK
Sbjct 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
Query 421 QA 422
QA
Sbjct 421 QA 422
>sp|Q3I5I7|NCAP_BCRP3 Nucleoprotein OS=Bat coronavirus Rp3/2004
OX=349344 GN=N PE=3 SV=1
Length=421
Score = 491 bits (1264), Expect = 3e-172, Method: Composition-based stats.
Identities = 413/422 (98%), Positives = 417/422 (99%), Gaps = 1/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQRSAPRITFGGPTDSTDNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRSAPRITFGGPTDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSG+ Q
Sbjct 180 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGRSQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YK FPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 360 YKIFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 419
Query 421 QA 422
QA
Sbjct 420 QA 421
>sp|Q3LZX4|NCAP_BCHK3 Nucleoprotein OS=Bat coronavirus HKU3 OX=442736
GN=N PE=3 SV=1
Length=421
Score = 486 bits (1250), Expect = 4e-170, Method: Composition-based stats.
Identities = 408/422 (97%), Positives = 415/422 (98%), Gaps = 1/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQS QRSAPRITFGGP DS DNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQS-QRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQ+SSRSSSRSRGNSRNSTPGSSRG+SPAR+ASGGGETALALLLLDRLNQLESKVSGKGQ
Sbjct 180 SQSSSRSSSRSRGNSRNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQ GQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQ+LIRQG DYK
Sbjct 240 QQPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGIDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQ+SMSGASADST
Sbjct 360 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADST 419
Query 421 QA 422
QA
Sbjct 420 QA 421
>sp|Q0Q468|NCAP_BC279 Nucleoprotein OS=Bat coronavirus 279/2005
OX=389167 GN=N PE=3 SV=1
Length=420
Score = 479 bits (1232), Expect = 2e-167, Method: Composition-based stats.
Identities = 408/422 (97%), Positives = 414/422 (98%), Gaps = 2/422 (0%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQRSAPRITFGGP+DSTDNNQ+GGR+GARPKQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRSAPRITFGGPSDSTDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKEELRFPRGQGVPINTNSG DDQIGYYRRATRRVRGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 60 GKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKKLSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASG GETALALLLLDRLNQLESKVSGKGQ
Sbjct 180 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGSGETALALLLLDRLNQLESKVSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKSYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
+WPQIAQFAPSASAFFGMSRIGMEVTP GTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA
Sbjct 300 YWPQIAQFAPSASAFFGMSRIGMEVTPLGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YK FPPTEPKKDKKKKTDEAQPLPQR+K QPTVTLLPAADMDDFSRQLQNSMSGASADST
Sbjct 360 YKAFPPTEPKKDKKKKTDEAQPLPQRKK-QPTVTLLPAADMDDFSRQLQNSMSGASADST 418
Query 421 QA 422
QA
Sbjct 419 QA 420
>sp|P0DTC9|NCAP_SARS2 Nucleoprotein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=N PE=1 SV=1
Length=419
Score = 476 bits (1224), Expect = 4e-166, Method: Composition-based stats.
Identities = 382/422 (91%), Positives = 398/422 (94%), Gaps = 3/422 (1%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
MSDNGPQ NQR+APRITFGGP+DST +NQNG R+GAR KQRRPQGLPNNTASWFTALTQH
Sbjct 1 MSDNGPQ-NQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTASWFTALTQH 59
Query 61 GKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEA 120
GKE+L+FPRGQGVPINTNS PDDQIGYYRRATRR+RGGDGKMK+LSPRWYFYYLGTGPEA
Sbjct 60 GKEDLKFPRGQGVPINTNSSPDDQIGYYRRATRRIRGGDGKMKDLSPRWYFYYLGTGPEA 119
Query 121 SLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGG 180
LPYGANK+GI+WVATEGALNTPKDHIGTRNP NNAA VLQLPQGTTLPKGFYAEGSRGG
Sbjct 120 GLPYGANKDGIIWVATEGALNTPKDHIGTRNPANNAAIVLQLPQGTTLPKGFYAEGSRGG 179
Query 181 SQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQ 240
SQASSRSSSRSR +SRNSTPGSSRG SPARMA GG+ ALALLLLDRLNQLESK+SGKGQ
Sbjct 180 SQASSRSSSRSRNSSRNSTPGSSRGTSPARMAGNGGDAALALLLLDRLNQLESKMSGKGQ 239
Query 241 QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYK 300
QQQGQTVTKKSAAEASKKPRQKRTATK YNVTQAFGRRGPEQTQGNFGDQ+LIRQGTDYK
Sbjct 240 QQQGQTVTKKSAAEASKKPRQKRTATKAYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYK 299
Query 301 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDA 360
HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTY GAIKLDDKDP FKD VILLNKHIDA
Sbjct 300 HWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYTGAIKLDDKDPNFKDQVILLNKHIDA 359
Query 361 YKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQNSMSGASADST 420
YKTFPPTEPKKDKKKK DE Q LPQRQKKQ TVTLLPAAD+DDFS+QLQ SMS SADST
Sbjct 360 YKTFPPTEPKKDKKKKADETQALPQRQKKQQTVTLLPAADLDDFSKQLQQSMS--SADST 417
Query 421 QA 422
QA
Sbjct 418 QA 419
>sp|P18446|NCAP_CVM1 Nucleoprotein OS=Murine coronavirus (strain
1) OX=11139 GN=N PE=3 SV=1
Length=455
Score = 423 bits (1087), Expect = 6e-145, Method: Composition-based stats.
Identities = 144/410 (35%), Positives = 205/410 (50%), Gaps = 43/410 (10%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTALTQHGK-EELRFPR 69
+ T+ T+ NNQN GR +PKQ + G SWF+ +TQ K +E +F +
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAQ 85
Query 70 GQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 86 GQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDI 145
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
+G+VWVA++ A I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 146 DGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGS 205
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
N SS PA +A L+L +L + Q + VT
Sbjct 206 RSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVT 256
Query 249 KKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQ 304
K+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 257 KQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPI 313
Query 305 IAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLN 355
+A+ AP+ SAFF S++ + + T L Y GAI+ D P F+ + +LN
Sbjct 314 LAELAPTPSAFFFGSKLELVKKNSGGADDPTKDVYELQYSGAIRFDSTLPGFETIMKVLN 373
Query 356 KHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
+++DAY +D+ D P PQR++ L ++D+ S
Sbjct 374 ENLDAY---------QDQAGGADVVSPKPQRKRGTKQKALK--GEVDNVS 412
>sp|P59713|NCAP_CVPV Nucleoprotein OS=Puffinosis coronavirus OX=76583
GN=N PE=2 SV=1
Length=457
Score = 421 bits (1082), Expect = 3e-144, Method: Composition-based stats.
Identities = 143/423 (34%), Positives = 208/423 (49%), Gaps = 41/423 (10%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S +G ++ + T+ T+ NNQN GR +PKQ + G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERGSNNQNRGRRN-QPKQTATTQPNSGSVVPHYSWFSGI 72
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 73 TQFQKGKEFKFAEGQGVPIANGIPATEQKGYWFRHNRRSFKSPDGQQKQLLPRWYFYYLG 132
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG + EG+ WVA + A I R+P+++ A + GT LP+G+Y E
Sbjct 133 TGPYAGAEYGDDVEGVCWVANKQADTRTSADIAERDPSSHEAIPTRFAPGTFLPQGYYVE 192
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S N SS PA + +A L+L +L +
Sbjct 193 GSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASIVKPDMAEEIAALVLAKLGKDAG-- 250
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 251 -------QPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPE 300
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+A AFF S++ + E T L Y GA++ D
Sbjct 301 MLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSVGVDEPTKDVYELQYSGAVRFDS 360
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +L ++++AY +++ D P PQR++ Q V ++D
Sbjct 361 TLPGFETIMKVLRENLNAY---------QNQDGGADVVSPKPQRKRGQRQVAQKKNDEVD 411
Query 403 DFS 405
+ S
Sbjct 412 NVS 414
>sp|P03416|NCAP_CVMA5 Nucleoprotein OS=Murine coronavirus (strain
A59) OX=11142 GN=N PE=1 SV=2
Length=454
Score = 417 bits (1072), Expect = 1e-142, Method: Composition-based stats.
Identities = 141/410 (34%), Positives = 200/410 (49%), Gaps = 44/410 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTALTQHGK-EELRFPR 69
+ T+ T+ NNQN GR +PKQ + G SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERGPNNQNRGRRN-QPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAE 85
Query 70 GQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 86 GQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI 145
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
EG+ WVA A + I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 146 EGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGS 205
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
N SS PA +A L+L +L + Q + VT
Sbjct 206 RSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVT 256
Query 249 KKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQ 304
K+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 257 KQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPI 313
Query 305 IAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLN 355
+A+ AP+ AFF S++ + E T L Y GA++ D P F+ + +LN
Sbjct 314 LAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLN 373
Query 356 KHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++++AY+ K D P PQR+ ++ ++D+ S
Sbjct 374 ENLNAYQ----------KDGGADVVSPKPQRKGRRQ--AQEKKDEVDNVS 411
>sp|Q83360|NCAP_CVMDV Nucleoprotein OS=Murine coronavirus (strain
DVIM) OX=231423 GN=N PE=3 SV=1
Length=455
Score = 417 bits (1071), Expect = 2e-142, Method: Composition-based stats.
Identities = 144/423 (34%), Positives = 206/423 (49%), Gaps = 43/423 (10%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRP----QGLPNNTASWFTAL 57
S +G ++ + T+ T+ NNQN GR +PKQ G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERGPNNQNRGRRN-QPKQTATTQSNSGSVVPHYSWFSGI 72
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 73 TQFQKGKEFQFADGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLG 132
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG + EG+ WVA A + I R+P+++ A + GT LP+GFY E
Sbjct 133 TGPHAGATYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVE 192
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S S N SS PA +A L+L +L +
Sbjct 193 GSGRSAPASRSGSRSQSRGSNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG-- 250
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 251 -------QPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSE 300
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+ AFF S++ + E T L Y GAI+ D
Sbjct 301 MLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGVDEPTKDVYELLYSGAIRFDS 360
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +LN++++AY +++ D P PQR+ ++ ++D
Sbjct 361 TLPGFETIMKVLNENLNAY---------QNQAGGVDVVSPKPQRKGRRQ--AQEKKDEVD 409
Query 403 DFS 405
+ S
Sbjct 410 NVS 412
>sp|P18447|NCAP_CVM3 Nucleoprotein OS=Murine coronavirus (strain
3) OX=11140 GN=N PE=1 SV=1
Length=454
Score = 417 bits (1071), Expect = 2e-142, Method: Composition-based stats.
Identities = 143/423 (34%), Positives = 205/423 (48%), Gaps = 44/423 (10%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S +G ++ + T+ T+ NNQN GR +PKQ + G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERGPNNQNRGRRN-QPKQTATTQPNSGSVVPHYSWFSGI 72
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 73 TQFQKGKEFQFAEGQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLG 132
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG + EG+ WVA A + I R+P+++ A + GT LP+GFY E
Sbjct 133 TGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPSSHEAIPTRFAPGTVLPQGFYVE 192
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S N SS PA +A L+L +L +
Sbjct 193 GSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG-- 250
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 251 -------QPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSE 300
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+ AFF S++ + E T L Y GA++ D
Sbjct 301 MLKLGTSDPQFPILAELAPTVGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDS 360
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +LN++++AY+ K D P PQR+ ++ ++D
Sbjct 361 TLPGFETIMKVLNENLNAYQ----------KDGGADVVSPKPQRKGRRQ--AQEKKDEVD 408
Query 403 DFS 405
+ S
Sbjct 409 NVS 411
>sp|Q02915|NCAP_CVRSD Nucleoprotein OS=Rat coronavirus (strain
681) OX=33740 GN=N PE=3 SV=1
Length=454
Score = 413 bits (1060), Expect = 9e-141, Method: Composition-based stats.
Identities = 140/424 (33%), Positives = 202/424 (48%), Gaps = 41/424 (10%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S +G ++ + T+ T+ NN N GR +PKQ + G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERGQNNGNRGRRN-QPKQTATTQPNTGSVVPHYSWFSGI 72
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F GQGVPI P +Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 73 TQFQKGKEFQFAGGQGVPIANGIPPSEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLG 132
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A +G + EG+ WVA A I R+P+++ A + GT LP+GFY E
Sbjct 133 TGPHAGASFGDSIEGVFWVANSQADTNTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVE 192
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S N SS PA +A L+L +L +
Sbjct 193 GSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG-- 250
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 251 -------QPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPE 300
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+ AFF S++ + E T L Y GA++ D
Sbjct 301 MLKLGTSDPQFPILAELAPTPGAFFFGSKLELVKKNSGGVDEPTKDVYELQYSGAVRFDS 360
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +LN++++AY +++ D P PQR++ D
Sbjct 361 TLPGFETIMKVLNENLNAY---------QNQAGGADVVSPKPQRKRGTKQTAQKEELDSI 411
Query 403 DFSR 406
++
Sbjct 412 SVAK 415
>sp|P03417|NCAP_CVMJH Nucleoprotein OS=Murine coronavirus (strain
JHM) OX=11144 GN=N PE=1 SV=1
Length=455
Score = 411 bits (1057), Expect = 2e-140, Method: Composition-based stats.
Identities = 143/423 (34%), Positives = 207/423 (49%), Gaps = 43/423 (10%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S +G ++ + T+ T+ NNQN GR +PKQ + G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERGLNNQNRGRKN-QPKQTATTQPNSGSVVPHYSWFSGI 72
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F +GQGVPI Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 73 TQFQKGKEFQFAQGQGVPIANGIPASQQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLG 132
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG + EG+VWVA++ A I R+P+++ A + GT LP+GFY E
Sbjct 133 TGPYAGAEYGDDIEGVVWVASQQAETRTSADIVERDPSSHEAIPTRFAPGTVLPQGFYVE 192
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S N SS PA +A L+L +L +
Sbjct 193 GSGRSAPASRSGSRPQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG-- 250
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 251 -------QPKQVTKQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGPE 300
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME---------VTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+A AFF S++ + T L Y GA++ D
Sbjct 301 MLKLGTSDPQFPILAELAPTAGAFFFGSKLELVKKNSGGADGPTKDVYELQYSGAVRFDS 360
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +LN++++AY +++ D P PQR++ ++D
Sbjct 361 TLPGFETIMKVLNENLNAY---------QNQDGGADVVSPKPQRKRGTKQKAQK--DEVD 409
Query 403 DFS 405
+ S
Sbjct 410 NVS 412
>sp|P18448|NCAP_CVMS Nucleoprotein OS=Murine coronavirus (strain
S) OX=11145 GN=N PE=3 SV=1
Length=454
Score = 409 bits (1050), Expect = 2e-139, Method: Composition-based stats.
Identities = 141/410 (34%), Positives = 202/410 (49%), Gaps = 44/410 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTALTQHGK-EELRFPR 69
+ T+ T+ NN N G +PKQ + G SWF+ +TQ K +E +F +
Sbjct 27 KTTWADQTERAGNNGNRG-RRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFVQ 85
Query 70 GQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 86 GQGVPIANGIPASEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDI 145
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
EG+VWVA++ A I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 146 EGVVWVASQQADTKTTADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGS 205
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
N SS PA +A L+L +L + Q + VT
Sbjct 206 RSQSRGPNNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVT 256
Query 249 KKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQ 304
K+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 257 KQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPI 313
Query 305 IAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLN 355
+A+ AP+A AFF S++ + E T L Y GA++ D P F+ + +LN
Sbjct 314 LAELAPTAGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAVRFDSTLPGFETIMKVLN 373
Query 356 KHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++++AY+ K D P PQR+ ++ ++D+ S
Sbjct 374 ENLNAYQ----------KDGGADVVSPKPQRKGRRQ--AQEKKDEVDNVS 411
>sp|Q9WCD0|NCAP_CVRNJ Nucleoprotein OS=Rat coronavirus (strain
NJ) OX=231433 GN=N PE=3 SV=1
Length=454
Score = 406 bits (1042), Expect = 4e-138, Method: Composition-based stats.
Identities = 139/410 (34%), Positives = 198/410 (48%), Gaps = 43/410 (10%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTALTQHGK-EELRFPR 69
+ T+ T+ NN N G +PKQ + G SWF+ +TQ K +E +F
Sbjct 27 KTTWADQTERAGNNGNRG-RRNQPKQTATTQPNSGSVVPHYSWFSGITQFQKGKEFQFAD 85
Query 70 GQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
GQGVPI +Q GY+ R RR + DG+ K+L PRWYFYYLGTGP A YG +
Sbjct 86 GQGVPIANGIPATEQKGYWYRHNRRSFKTPDGQQKQLLPRWYFYYLGTGPHAGAIYGDSI 145
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
EG+ WVA A + I R+P+++ A + GT LP+GFY EGS + AS S
Sbjct 146 EGVFWVANSQADTNTRADIVERDPSSHEAIPTRFAPGTVLPQGFYVEGSGRSAPASRSGS 205
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVT 248
N SS PA +A L+L +L + Q + VT
Sbjct 206 RSQSRGPSNRARSSSNQRQPASTVKPDMAEEIAALVLAKLGKDAG---------QPKQVT 256
Query 249 KKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQ 304
K+SA E + KPRQKRT KQ V Q FG+RGP Q NFG ++++ GT +P
Sbjct 257 KQSAKEVRQKILNKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSEMLKLGTSDPQFPI 313
Query 305 IAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLN 355
+A+ AP+ AFF S++ + E T L Y GAI+ D P F+ + +LN
Sbjct 314 LAELAPTPGAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDSTLPGFETIMKVLN 373
Query 356 KHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++++AY+ + D P PQR+ ++ ++D+ S
Sbjct 374 ENLNAYQK---------EAGGVDVVSPKPQRKGRRQ--AQEKKDEVDNVS 412
>sp|Q9PY96|NCAP_CVM2 Nucleoprotein OS=Murine coronavirus (strain
2) OX=76344 GN=N PE=2 SV=1
Length=451
Score = 402 bits (1033), Expect = 7e-137, Method: Composition-based stats.
Identities = 140/423 (33%), Positives = 205/423 (48%), Gaps = 47/423 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S +G ++ + T+ T+ N GR PKQ + G SWF+ +
Sbjct 14 SSSGNRAGNGILKKTTWADQTERG----NRGRRN-HPKQTATTQPNAGSVVPHYSWFSGI 68
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F +GQGVPI + +Q GY+ R RR + DG+ K+L PRWYFYYLG
Sbjct 69 TQFQKGKEFQFAQGQGVPIASGIPASEQKGYWYRHNRRSFKTPDGQHKQLLPRWYFYYLG 128
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG + EG+VWVA++ A + R+P+++ A + GT LP+GFY E
Sbjct 129 TGPHAGAEYGDDIEGVVWVASQQADTKTTADVVERDPSSHEAIPTRFAPGTVLPQGFYVE 188
Query 176 GSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKV 235
GS + AS S N SS PA +A L+L +L +
Sbjct 189 GSGRSAPASRSGSRSQSRGPNNRARSSSNQRQPASAVKPDMAEEIAALVLAKLGKDAG-- 246
Query 236 SGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQD 291
Q + VTK+SA E + KPRQKRT KQ V Q FG+RGP Q NFG +
Sbjct 247 -------QPKQVTKQSAKEVRQKILTKPRQKRTPNKQCPVQQCFGKRGPNQ---NFGGSE 296
Query 292 LIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM---------EVTPSGTWLTYHGAIKLDD 342
+++ GT +P +A+ AP+ SAFF S++ + E T L Y GAI+ D
Sbjct 297 MLKLGTSDPQFPILAELAPTPSAFFFGSKLELVKKNSGGADEPTKDVYELQYSGAIRFDS 356
Query 343 KDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
P F+ + +L ++++AY +D+ D P P R+ ++ ++D
Sbjct 357 TLPGFETIMKVLTENLNAY---------QDQAGSVDLVSPKPPRRGRRQ--AQEKKDEVD 405
Query 403 DFS 405
+ S
Sbjct 406 NVS 408
>sp|Q5MQC6|NCAP_CVHN1 Nucleoprotein OS=Human coronavirus HKU1
(isolate N1) OX=443239 GN=N PE=1 SV=1
Length=441
Score = 400 bits (1028), Expect = 3e-136, Method: Composition-based stats.
Identities = 129/395 (33%), Positives = 199/395 (50%), Gaps = 42/395 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPK---QRRPQGLPNNTASWFTALTQHGK-EELRFPRG 70
+ ++ ++ N GR +PK +PQG SWF+ +TQ K + +F G
Sbjct 24 KTSWADQSERNYQTFNRGRK-TQPKFTVSTQPQGNTIPHYSWFSGITQFQKGRDFKFSDG 82
Query 71 QGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKE 129
QGVPI P + GY+ R +RR + DG+ K+L PRWYFYYLGTGP A+ YG + E
Sbjct 83 QGVPIAFGVPPSEAKGYWYRHSRRSFKTADGQQKQLLPRWYFYYLGTGPYANASYGESLE 142
Query 130 GIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSS 189
G+ WVA A + + +R+P A + P GT LP+G+Y EGS G S ++SR S
Sbjct 143 GVFWVANHQADTSTPSDVSSRDPTTQEAIPTRFPPGTILPQGYYVEGS-GRSASNSRPGS 201
Query 190 RSRGN---SRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQT 246
RS+ +R+ + +S + +A L+L +L G+ + Q
Sbjct 202 RSQSRGPNNRSLSRSNSNFRHSDSIVKPDMADEIANLVLAKL----------GKDSKPQQ 251
Query 247 VTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHW 302
VTK++A E KPRQKRT K NV Q FG+RGP Q NFG+ ++++ GT+ +
Sbjct 252 VTKQNAKEIRHKILTKPRQKRTPNKHCNVQQCFGKRGPSQ---NFGNAEMLKLGTNDPQF 308
Query 303 PQIAQFAPSASAFFGMSRIGM--------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
P +A+ AP+ AFF S++ + L Y G+I+ D P F+ + +L
Sbjct 309 PILAELAPTPGAFFFGSKLDLVKRDSEADSPVKDVFELHYSGSIRFDSTLPGFETIMKVL 368
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKK 389
++++AY ++ +D PQR++
Sbjct 369 EENLNAY-------VNSNQNTDSDSLSSKPQRKRG 396
>sp|Q8JSP4|NCAP_CVPIA Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain IAF-404) OX=230236 GN=N PE=3
SV=1
Length=449
Score = 399 bits (1025), Expect = 1e-135, Method: Composition-based stats.
Identities = 141/414 (34%), Positives = 203/414 (49%), Gaps = 46/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR + KQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-VQSKQTATSQQPSGGTVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKHQYGTDIDGVFWVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
EGS G S +SRS+SR+ N S SR NS R ++ G D +Q+ S
Sbjct 189 EGS-GRSAPNSRSTSRA-PNRAPSAGSRSRANSGNRTSTPGVT-------PDMADQIASL 239
Query 235 VSGK--GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
V K + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 240 VLAKLGKDATKPQQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY + ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNQNLNAY---------QHQEDGMMNISPKPQRQRGQK 401
>sp|Q0ZME3|NCAP_CVHN5 Nucleoprotein OS=Human coronavirus HKU1
(isolate N5) OX=443241 GN=N PE=3 SV=1
Length=441
Score = 398 bits (1023), Expect = 2e-135, Method: Composition-based stats.
Identities = 132/395 (33%), Positives = 200/395 (51%), Gaps = 42/395 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPK---QRRPQGLPNNTASWFTALTQHGK-EELRFPRG 70
+ ++ ++ + N GR +PK +PQG P SWF+ +TQ K + +FP G
Sbjct 24 KTSWVDQSERSHQTYNRGRK-PQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDG 82
Query 71 QGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKE 129
QGVPI P + GY+ + RR + DG+ K+L PRWYFYYLGTGP AS YG E
Sbjct 83 QGVPIAYGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHE 142
Query 130 GIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSS 189
GI WVA+ A + + R+P A + GT LP+G+Y EGS G S ++SR S
Sbjct 143 GIFWVASHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGS 201
Query 190 RSRGN---SRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQT 246
RS+ +R+ + +S + +A L+L +L G+ + Q
Sbjct 202 RSQSRGPNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQ 251
Query 247 VTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHW 302
VTK++A E KPRQKRT K NV Q FG+RGP Q NFG+ ++++ GT+ +
Sbjct 252 VTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQF 308
Query 303 PQIAQFAPSASAFFGMSRIGM--------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
P +A+ AP+ AFF S++ + + L Y G+I+ D P F+ + +L
Sbjct 309 PILAELAPTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVL 368
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKK 389
+++DAY ++ + P PQR++
Sbjct 369 KENLDAY-------VNSNQNTVSGSLSPKPQRKRG 396
>sp|Q14EA6|NCAP_CVHN2 Nucleoprotein OS=Human coronavirus HKU1
(isolate N2) OX=443240 GN=N PE=3 SV=1
Length=441
Score = 398 bits (1023), Expect = 2e-135, Method: Composition-based stats.
Identities = 132/395 (33%), Positives = 200/395 (51%), Gaps = 42/395 (11%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPK---QRRPQGLPNNTASWFTALTQHGK-EELRFPRG 70
+ ++ ++ + N GR +PK +PQG P SWF+ +TQ K + +FP G
Sbjct 24 KTSWVDQSERSHQTYNRGRK-PQPKFTVSTQPQGNPIPHYSWFSGITQFQKGRDFKFPDG 82
Query 71 QGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKE 129
QGVPI P + GY+ + RR + DG+ K+L PRWYFYYLGTGP AS YG E
Sbjct 83 QGVPIAYGIPPSEAKGYWYKHNRRSFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAHE 142
Query 130 GIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSS 189
GI WVA+ A + + R+P A + GT LP+G+Y EGS G S ++SR S
Sbjct 143 GIFWVASHQADTSIPSDVSARDPTIQEAIPTRFSPGTILPQGYYVEGS-GRSASNSRPGS 201
Query 190 RSRGN---SRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQT 246
RS+ +R+ + +S + +A L+L +L G+ + Q
Sbjct 202 RSQSRGPNNRSLSRSNSNFRHSDSIVKPDMADEIASLVLAKL----------GKDSKPQQ 251
Query 247 VTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHW 302
VTK++A E KPRQKRT K NV Q FG+RGP Q NFG+ ++++ GT+ +
Sbjct 252 VTKQNAKEIRHKILMKPRQKRTPNKFCNVQQCFGKRGPLQ---NFGNSEMLKLGTNDPQF 308
Query 303 PQIAQFAPSASAFFGMSRIGM--------EVTPSGTWLTYHGAIKLDDKDPQFKDNVILL 354
P +A+ AP+ AFF S++ + + L Y G+I+ D P F+ + +L
Sbjct 309 PILAELAPTPGAFFFGSKLELFKRDSDADSPSKDTFELRYSGSIRFDSTLPGFETIMKVL 368
Query 355 NKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKK 389
+++DAY ++ + P PQR++
Sbjct 369 KENLDAY-------VNSNQNTVSGSLSPKPQRKRG 396
>sp|P59712|NCAP_CVBQ Nucleoprotein OS=Bovine coronavirus (strain
Quebec) OX=11133 GN=N PE=3 SV=1
Length=448
Score = 398 bits (1023), Expect = 2e-135, Method: Composition-based stats.
Identities = 132/407 (32%), Positives = 197/407 (48%), Gaps = 47/407 (12%)
Query 9 NQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTALTQHGK- 62
N+ + + +D + N Q GR A+PKQ LP+ SWF+ +TQ K
Sbjct 17 NRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQLPSGGNVVPYYSWFSGITQFQKG 75
Query 63 EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEAS 121
+E F GQGVPI + GY+ R RR + DG ++L PRWYFYYLGTGP A
Sbjct 76 KEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAK 135
Query 122 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGS 181
YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y EGS +
Sbjct 136 DQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSA 195
Query 182 QASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLESKVSGKG 239
S +S S S + + +P + +A L+L +L +
Sbjct 196 PNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK--------- 246
Query 240 QQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQ 295
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++
Sbjct 247 DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKL 303
Query 296 GTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKD 344
GT +P +A+ AP+A AFF SR+ + E L Y+GAI+ D
Sbjct 304 GTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTL 363
Query 345 PQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 364 SGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|P10527|NCAP_CVBM Nucleoprotein OS=Bovine coronavirus (strain
Mebus) OX=11132 GN=N PE=1 SV=1
Length=448
Score = 398 bits (1023), Expect = 2e-135, Method: Composition-based stats.
Identities = 132/407 (32%), Positives = 197/407 (48%), Gaps = 47/407 (12%)
Query 9 NQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTALTQHGK- 62
N+ + + +D + N Q GR A+PKQ LP+ SWF+ +TQ K
Sbjct 17 NRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQLPSGGNVVPYYSWFSGITQFQKG 75
Query 63 EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLGTGPEAS 121
+E F GQGVPI + GY+ R RR + DG ++L PRWYFYYLGTGP A
Sbjct 76 KEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLGTGPHAK 135
Query 122 LPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGS 181
YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y EGS +
Sbjct 136 DQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYIEGSGRSA 195
Query 182 QASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLESKVSGKG 239
S +S S S + + +P + +A L+L +L +
Sbjct 196 PNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK--------- 246
Query 240 QQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQ 295
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG ++++
Sbjct 247 DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGGGEMLKL 303
Query 296 GTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAIKLDDKD 344
GT +P +A+ AP+A AFF SR+ + E L Y+GAI+ D
Sbjct 304 GTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGAIRFDSTL 363
Query 345 PQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 364 SGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|Q8BB23|NCAP_CVP67 Nucleoprotein OS=Porcine hemagglutinating
encephalomyelitis virus (strain 67N) OX=230237 GN=N PE=3 SV=1
Length=449
Score = 397 bits (1020), Expect = 7e-135, Method: Composition-based stats.
Identities = 141/414 (34%), Positives = 203/414 (49%), Gaps = 46/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR + KQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-VQSKQTATSQQPSGGTVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPSTEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVFWVASNQADINTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
EGS G S +SRS+SR+ N S SR NS R ++ G D +Q+ S
Sbjct 189 EGS-GRSAPNSRSTSRA-PNRAPSAGSRSRANSGNRTSTPGVT-------PDMADQIASL 239
Query 235 VSGK--GQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
V K + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 240 VLAKLGKDATKPQQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY + ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNQNLNAY---------QHQEDGMMNISPKPQRQRGQK 401
>sp|Q9QAR1|NCAP_CVBLS Nucleoprotein OS=Bovine coronavirus (strain
LSU-94LSS-051) OX=233261 GN=N PE=3 SV=1
Length=448
Score = 396 bits (1018), Expect = 1e-134, Method: Composition-based stats.
Identities = 132/414 (32%), Positives = 197/414 (48%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQQPSAGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK-- 246
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 247 -------DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|P26020|NCAP_CVBOK Nucleoprotein OS=Bovine coronavirus (strain
OK-0514) OX=231432 GN=N PE=3 SV=1
Length=448
Score = 396 bits (1018), Expect = 2e-134, Method: Composition-based stats.
Identities = 132/414 (32%), Positives = 197/414 (48%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK-- 246
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 247 -------DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|Q91A22|NCAP_CVBEN Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-ENT) OX=233262 GN=N PE=3 SV=1
Length=448
Score = 396 bits (1017), Expect = 2e-134, Method: Composition-based stats.
Identities = 133/414 (32%), Positives = 199/414 (48%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVYWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDA 248
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 249 A---------KPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ T P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400
>sp|Q9QAR8|NCAP_CVBLY Nucleoprotein OS=Bovine coronavirus (strain
LY-138) OX=11131 GN=N PE=3 SV=1
Length=448
Score = 396 bits (1016), Expect = 3e-134, Method: Composition-based stats.
Identities = 133/414 (32%), Positives = 197/414 (48%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGS--SRGNSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + S +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRASSRASSAGSRSRADSGNRTPTSGVTPDMADQIASLVLAKLGK-- 246
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 247 -------DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|P19902|NCAP_CVBF Nucleoprotein OS=Bovine coronavirus (strain
F15) OX=11129 GN=N PE=3 SV=1
Length=448
Score = 396 bits (1016), Expect = 3e-134, Method: Composition-based stats.
Identities = 131/414 (32%), Positives = 196/414 (47%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQPKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTRDGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVFWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + + L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIVSLVLAKLGK-- 246
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 247 -------DATKPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRGQK 400
>sp|Q9DQX6|NCAP_CVEN9 Nucleoprotein OS=Equine coronavirus (isolate
NC99) OX=202496 GN=N PE=3 SV=1
Length=446
Score = 395 bits (1014), Expect = 5e-134, Method: Composition-based stats.
Identities = 134/435 (31%), Positives = 206/435 (47%), Gaps = 46/435 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQ----RRPQGLPNNTASWFTAL 57
S N+ + + +D + N Q GR A+PKQ + G SWF+ +
Sbjct 10 SSRASSGNRAGNGILKWADQSDQSSNFQTRGRR-AQPKQTATSQPAGGNVVPYYSWFSGI 68
Query 58 TQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYLG 115
TQ K +E +F GQGVPI + GY+ R RR + DG ++L PRWYFYYLG
Sbjct 69 TQFQKGKEFQFAEGQGVPIAPGIPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYLG 128
Query 116 TGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAE 175
TGP A YG N +G+ WVA + A + R+P+++ A + P GT LP+G+Y E
Sbjct 129 TGPHAKAQYGTNIDGVFWVANKQADVNTPADVVDRDPSSDEAIPTRFPPGTVLPQGYYIE 188
Query 176 GSRGGSQA--SSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLES 233
GS S+ +S ++ + +S +P + +A L+L +L +
Sbjct 189 GSGRSVPNSRSTSRASSRASSAGSRNRSNSGTRTPTSGVTSDMADQIASLVLAKLGK--- 245
Query 234 KVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFGD 289
+ Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 246 ------DATKPQQVTKQTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFGG 296
Query 290 QDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGAI 338
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GAI
Sbjct 297 AEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNFDEPQKDVYELRYNGAI 356
Query 339 KLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
+ D P F+ + +LN++++AY+ ++ P PQRQ+ Q
Sbjct 357 RFDSTLPGFETIMKVLNENLNAYQ----------QQDDGTNMSPKPQRQRGQQKGGENED 406
Query 399 ADMDDFSRQLQNSMS 413
+ ++Q + S
Sbjct 407 VSVAAPKSRVQQNKS 421
>sp|Q8V432|NCAP_CVBLU Nucleoprotein OS=Bovine coronavirus (strain
98TXSF-110-LUN) OX=233264 GN=N PE=3 SV=1
Length=448
Score = 394 bits (1011), Expect = 1e-133, Method: Composition-based stats.
Identities = 132/414 (32%), Positives = 198/414 (48%), Gaps = 47/414 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D + N Q GR A+ KQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQSRNVQTRGRR-AQSKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATRR-VRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQGVPI + GY+ R RR + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFAEGQGVPIAPGVPATEAKGYWYRHNRRSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVYWVASNQADVNTPADILDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRASSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGKDA 248
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ + Q VTK++A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 249 A---------KPQQVTKQTAKEIRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNLDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
I+ D F+ + +LN++++AY+ ++ T P PQRQ+ Q
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGTMNMSPKPQRQRGQK 400
>sp|P33469|NCAP_CVHOC Nucleoprotein OS=Human coronavirus OC43
OX=31631 GN=N PE=1 SV=1
Length=448
Score = 388 bits (997), Expect = 2e-131, Method: Composition-based stats.
Identities = 129/412 (31%), Positives = 192/412 (47%), Gaps = 47/412 (11%)
Query 2 SDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPN-----NTASWFTA 56
S N+ + + +D N Q GR A+PKQ P+ SWF+
Sbjct 10 SSRASSGNRSGNGILKWADQSDQVRNVQTRGRR-AQPKQTATSQQPSGGNVVPYYSWFSG 68
Query 57 LTQHGK-EELRFPRGQGVPINTNSGPDDQIGYYRRATR-RVRGGDGKMKELSPRWYFYYL 114
+TQ K +E F GQG PI + GY+ R R + DG ++L PRWYFYYL
Sbjct 69 ITQFQKGKEFEFVEGQGPPIAPGVPATEAKGYWYRHNRGSFKTADGNQRQLLPRWYFYYL 128
Query 115 GTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYA 174
GTGP A YG + +G+ WVA+ A I R+P+++ A + P GT LP+G+Y
Sbjct 129 GTGPHAKDQYGTDIDGVYWVASNQADVNTPADIVDRDPSSDEAIPTRFPPGTVLPQGYYI 188
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRG--NSPARMASGGGETALALLLLDRLNQLE 232
EGS + S +S S S + + +P + +A L+L +L +
Sbjct 189 EGSGRSAPNSRSTSRTSSRASSAGSRSRANSGNRTPTSGVTPDMADQIASLVLAKLGK-- 246
Query 233 SKVSGKGQQQQGQTVTKKSAAEASK----KPRQKRTATKQYNVTQAFGRRGPEQTQGNFG 288
+ Q VTK +A E + KPRQKR+ KQ V Q FG+RGP Q NFG
Sbjct 247 -------DATKPQQVTKHTAKEVRQKILNKPRQKRSPNKQCTVQQCFGKRGPNQ---NFG 296
Query 289 DQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM-----------EVTPSGTWLTYHGA 337
++++ GT +P +A+ AP+A AFF SR+ + E L Y+GA
Sbjct 297 GGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAKVQNLSGNPDEPQKDVYELRYNGA 356
Query 338 IKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKK 389
I+ D F+ + +LN++++AY+ ++ P PQRQ+
Sbjct 357 IRFDSTLSGFETIMKVLNENLNAYQ----------QQDGMMNMSPKPQRQRG 398
>sp|Q9PZ50|NCAP_CVTMI Nucleoprotein OS=Turkey coronavirus (strain
Minnesota) OX=231430 GN=N PE=3 SV=1
Length=409
Score = 381 bits (978), Expect = 4e-129, Method: Composition-based stats.
Identities = 104/370 (28%), Positives = 162/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPGQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+
Sbjct 78 KPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASTRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAAKII-----QDQQRKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGITDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ ID T P + K K + + P P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCIDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRSK 361
Query 391 PTVTLLPAAD 400
D
Sbjct 362 KEKKPKKQDD 371
>sp|Q8JMI6|NCAP_IBVSA Nucleoprotein OS=Avian infectious bronchitis
virus (strain SAIB20) OX=231426 GN=N PE=2 SV=1
Length=409
Score = 381 bits (978), Expect = 5e-129, Method: Composition-based stats.
Identities = 105/373 (28%), Positives = 164/373 (44%), Gaps = 30/373 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
R P+ + ASWF A+ ++L P G GVP N N Q GY+RR R
Sbjct 22 PRPPKVGSSGNASWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQK-K 389
+ DPQF + V + ++ +D T P + K K + + P P++Q+ K
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361
Query 390 QPTVTLLPAADMD 402
+ ++D
Sbjct 362 KEKRPKKQDDEVD 374
>sp|P12648|NCAP_IBVK Nucleoprotein OS=Avian infectious bronchitis
virus (strain KB8523) OX=11126 GN=N PE=3 SV=1
Length=409
Score = 379 bits (974), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/363 (29%), Positives = 159/363 (44%), Gaps = 34/363 (9%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNSPPLKFEGSGVPDNENLKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+
Sbjct 78 KPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGKSTAASSAASSRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGAEDDLIARAAKII-----QDQQKKGARITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTL 395
+ DPQF + V + ++ +D T P K DE +P + + T T
Sbjct 302 FTTVVSRNDPQFDNYVKICDQCVDGVGTRP----------KDDEPKPKSRSSSRPATRTS 351
Query 396 LPA 398
PA
Sbjct 352 SPA 354
>sp|P69598|NCAP_IBVBU Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette US) OX=160750 GN=N PE=1 SV=1
Length=409
Score = 379 bits (974), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/370 (28%), Positives = 162/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSDSGDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + K K + + P P++Q+ +
Sbjct 302 FTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
L D
Sbjct 362 KEKKLKKQDD 371
>sp|P69597|NCAP_IBVBC Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette CK) OX=160235 GN=N PE=1 SV=1
Length=409
Score = 379 bits (974), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/370 (28%), Positives = 162/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSDSGDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + K K + + P P++Q+ +
Sbjct 302 FTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
L D
Sbjct 362 KEKKLKKQDD 371
>sp|P69596|NCAP_IBVB Nucleoprotein OS=Avian infectious bronchitis
virus (strain Beaudette) OX=11122 GN=N PE=1 SV=1
Length=409
Score = 379 bits (974), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/370 (28%), Positives = 162/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNTPPPKFEGSGVPDNENIKPSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAAASRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSDSGDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYRVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQLDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + K K + + P P++Q+ +
Sbjct 302 FTTVVPCDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
L D
Sbjct 362 KEKKLKKQDD 371
>sp|Q9J4B0|NCAP_IBVDE Nucleoprotein OS=Avian infectious bronchitis
virus (strain DE072) OX=233265 GN=N PE=3 SV=1
Length=409
Score = 379 bits (974), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/363 (29%), Positives = 158/363 (44%), Gaps = 34/363 (9%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQLR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+
Sbjct 78 KPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEGDLIARAAKII-----QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKIE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTL 395
+ DPQF + V + ++ +D T P K DE +P + + T T
Sbjct 302 FTTVVSRDDPQFDNYVKICDQCVDGVGTRP----------KDDEPRPKSRSSSRPATRTS 351
Query 396 LPA 398
PA
Sbjct 352 SPA 354
>sp|Q64960|NCAP_IBVAR Nucleoprotein OS=Avian infectious bronchitis
virus (strain Arkansas 99) OX=231471 GN=N PE=3 SV=1
Length=409
Score = 379 bits (973), Expect = 2e-128, Method: Composition-based stats.
Identities = 104/363 (29%), Positives = 158/363 (44%), Gaps = 34/363 (9%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQAIKA---KKLNSHPPKFEGSGVPDNENLKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G +++GIVWVA +GA + H GTR+P+
Sbjct 78 KPVKGGRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSHQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSRDGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAAKII-----QDQQKKGSRITKVKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTL 395
+ DPQF + V + ++ +D T P K DE +P + + T T
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRP----------KDDEPRPKSRSSSRPATRTS 351
Query 396 LPA 398
PA
Sbjct 352 SPA 354
>sp|P32923|NCAP_IBVG Nucleoprotein OS=Avian infectious bronchitis
virus (strain Gray) OX=31624 GN=N PE=1 SV=2
Length=409
Score = 379 bits (973), Expect = 2e-128, Method: Composition-based stats.
Identities = 105/373 (28%), Positives = 165/373 (44%), Gaps = 30/373 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
R P+ + ASWF A+ ++L P G GVP N N Q GY+RR R
Sbjct 22 PRPPKVGSSGNASWFQAIKA---KKLNSPQPKFEGSGVPDNENFKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G+ K + WYFYY GTGP A L +G +++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGRRKPVPDAWYFYYTGTGPAADLNWGDSQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRPPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQK-K 389
+ DPQF + V + ++ +D T P + K K + + P P++Q+ K
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPKPKSRSSSRPATRTSSPAPRQQRLK 361
Query 390 QPTVTLLPAADMD 402
+ ++D
Sbjct 362 KEKRPKKQDDEVD 374
>sp|Q9J4A3|NCAP_IBVD1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain D1466) OX=231472 GN=N PE=3 SV=1
Length=409
Score = 378 bits (970), Expect = 7e-128, Method: Composition-based stats.
Identities = 105/363 (29%), Positives = 160/363 (44%), Gaps = 34/363 (9%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF AL ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-Y 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G +++GIVWV+ +GA + + GTR+P+
Sbjct 78 KPGKGGRKSVPDAWYFYYTGTGPAADLNWGYSQDGIVWVSAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGAEDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KCKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTL 395
+ DPQF + V + ++ +D T P K DE +P + + T T
Sbjct 302 FTTVVSRDDPQFDNYVKICDQCVDGVGTRP----------KDDEPRPKSRPNSRPATRTS 351
Query 396 LPA 398
PA
Sbjct 352 SPA 354
>sp|Q98WJ7|NCAP_IBVH1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H120) OX=231424 GN=N PE=3 SV=1
Length=409
Score = 376 bits (965), Expect = 4e-127, Method: Composition-based stats.
Identities = 105/363 (29%), Positives = 160/363 (44%), Gaps = 34/363 (9%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF AL ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQALKA---KKLNSPPPKFEGSGVPDNENLKLSQQHGYWRRQAR-Y 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G +++GIVWV+ +GA + + GTR+P+
Sbjct 78 KPGKGGKKSVPDAWYFYYTGTGPAADLNWGDSQDGIVWVSAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPINRGRSGRSTAASSAASSRAPSRDGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGAEDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVIAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTL 395
+ DPQF + V + ++ +D T P K DE +P + + T T
Sbjct 302 FTTVVSRDDPQFDNYVKICDQCVDGVGTRP----------KDDEPRPKSRPNSRPATRTS 351
Query 396 LPA 398
PA
Sbjct 352 SPA 354
>sp|Q98Y32|NCAP_IBVH5 Nucleoprotein OS=Avian infectious bronchitis
virus (strain H52) OX=231425 GN=N PE=2 SV=1
Length=409
Score = 376 bits (965), Expect = 5e-127, Method: Composition-based stats.
Identities = 101/370 (27%), Positives = 161/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + SWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKVGSSGNVSWFQAIKA---KKLNSPPPKFEGSGVPDNENLKPSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A+L +G +++GIVWVA +GA + + GTR+ +
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREVSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAARII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ + P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPRLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + + K + + P P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
D
Sbjct 362 KEKKPKKQDD 371
>sp|Q9PZ49|NCAP_CVTNC Nucleoprotein OS=Turkey coronavirus (strain
NC95) OX=231431 GN=N PE=3 SV=1
Length=409
Score = 375 bits (962), Expect = 1e-126, Method: Composition-based stats.
Identities = 100/370 (27%), Positives = 158/370 (43%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF ++ ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGNASWFQSIKA---KKLNSPQPKFEGSGVPDNENIKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A L +G ++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQDGIVWVAAKGADVKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G + R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDSNFRWDFIPLHRGRSGRSTAASSAASSRAPSRDGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAAKII-----QDQQKKGSRITKAKADEMAHRRYCKRTVPPGYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLRFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + K + + P P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVTICDQCVDGIGTRPKDNEPRPKSRPSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
D
Sbjct 362 KEKKPKKQDD 371
>sp|Q82616|NCAP_IBVM Nucleoprotein OS=Avian infectious bronchitis
virus (strain M41) OX=11127 GN=N PE=3 SV=1
Length=409
Score = 374 bits (960), Expect = 2e-126, Method: Composition-based stats.
Identities = 99/370 (27%), Positives = 159/370 (43%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ +L P G GVP N N Q GY+RR
Sbjct 22 PKPPKVGSSGNASWFQAIKA---NKLNIPPPKFEGSGVPDNENLKSSQQHGYWRRQA-TF 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G G K + WYFYY GTGP A+L +G +++GIVWVA +GA + + GTR+ +
Sbjct 78 KPGKGGRKPVPDAWYFYYTGTGPAANLNWGDSQDGIVWVAGKGADTKFRSNQGTRDSDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + + R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNGGRSGRSTAASSAASSRAPSREVSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGSEDDLIARAARII-----QDQQKKGSRITKAKADEMAHRRYCKRTIPPNYKVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + + K + + P P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
D
Sbjct 362 KEKKPKKHDD 371
>sp|Q96598|NCAP_IBVVI Nucleoprotein OS=Avian infectious bronchitis
virus (strain Vic S) OX=231428 GN=N PE=2 SV=1
Length=409
Score = 374 bits (960), Expect = 3e-126, Method: Composition-based stats.
Identities = 103/370 (28%), Positives = 161/370 (44%), Gaps = 29/370 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + ASWF A+ ++L P G GVP N N P Q GY+RR R
Sbjct 22 PKPPKIGSSGNASWFQAIKA---KKLNVPQPKFEGSGVPDNNNIKPSQQHGYWRRQAR-Y 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G N++GIVWVA +GA + + GTR+P+
Sbjct 78 KPGKSGRKPVPDAWYFYYTGTGPAADLNWGENQDGIVWVAAKGADTKSRSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAASSAASSRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGAEDDLIARAAKII-----QDQQKRGSRITKAKADEMAHRRYCKRTIPPGYRVDQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G PS+ A SR+ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTATLNLIPSSHACLFGSRVTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQKKQ 390
+ DPQF + V + ++ +D T P + + K + + P P++Q+ +
Sbjct 302 FTTVVPRDDPQFDNYVKICDQCVDGVGTRPKDDEPRPKSRSSSRPATRGNSPAPRQQRPK 361
Query 391 PTVTLLPAAD 400
D
Sbjct 362 KEKKPKKQDD 371
>sp|Q9PZ51|NCAP_CVTIN Nucleoprotein OS=Turkey coronavirus (strain
Indiana) OX=231429 GN=N PE=3 SV=1
Length=409
Score = 370 bits (949), Expect = 1e-124, Method: Composition-based stats.
Identities = 99/358 (28%), Positives = 158/358 (44%), Gaps = 29/358 (8%)
Query 40 QRRPQGLPNNTASWFTALTQHGKEELRFP----RGQGVPINTNSGPDDQIGYYRRATRRV 95
+ P+ + + SWF A+ ++L P G GVP N N Q GY+RR R
Sbjct 22 PKPPKVGSSGSVSWFQAIKA---KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQAR-F 77
Query 96 RGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNN 155
+ G K + WYFYY GTGP A L +G ++ GIVWVA +GA K + GTR+P+
Sbjct 78 KSSRGGRKPVPDAWYFYYTGTGPAADLQWGDSQAGIVWVAAKGADVKSKSNQGTRDPDKF 137
Query 156 AATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGG 215
L+ G G G + +R R + ++ +P+R S G
Sbjct 138 DQYPLRFSDG----------GPDGNFRWDFIPLNRGRSGRSTAVSSAASSRAPSREGSRG 187
Query 216 GETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
+ L+ R ++ + QQ++G +TK A E + + KRT Y V Q F
Sbjct 188 RRSGAEDDLIARAAKII-----QDQQKKGSRITKAKAEEMAHRRYCKRTVPPGYKVEQVF 242
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYH 335
G R + +GNFGD + +G + PS+ A S++ ++ P G L +
Sbjct 243 GPRT-KGKEGNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFASKLTPKLQPDGLHLKFE 301
Query 336 GAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEA-----QPLPQRQK 388
+ DPQF + V + ++ +D T P + + K + + P P++Q+
Sbjct 302 FTTVVPRDDPQFDNYVSICDQCVDGVGTRPKDDEPRPKSRASSRPATRGNSPAPRQQR 359
>sp|A3EXD7|NCAP_BCHK5 Nucleoprotein OS=Bat coronavirus HKU5 OX=694008
GN=N PE=3 SV=1
Length=427
Score = 351 bits (900), Expect = 4e-117, Method: Composition-based stats.
Identities = 171/401 (43%), Positives = 226/401 (56%), Gaps = 30/401 (7%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+ PR + F ++ N+Q GR + +P+ PN T SWFT LTQHGK+ L FP G
Sbjct 5 APPRAVVFANDNETPTNSQRSGR-----PRTKPRPAPNTTVSWFTGLTQHGKQPLAFPPG 59
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS P GY+RR R++ G+G K L+PRWYFYY GTGPEA+LP+ + K+G
Sbjct 60 QGVPLNANSTPAQNAGYWRRQDRKINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVKDG 118
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
I+WV GA + P GTRNP N+ A V Q GTTLPK F+ EG+ G SQ+SSR+SSR
Sbjct 119 IIWVHENGATDAP-SVFGTRNPANDPAIVTQFAPGTTLPKNFHIEGTGGNSQSSSRASSR 177
Query 191 SRGNSRNSTPGSSRG---NSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
S S + S+ SPA G A L +L L + + + +Q + +
Sbjct 178 SSSRSSSRNGRSNNSSRNASPAPHGVGDVVGAGTLSVLLDLQKRLADLEAGKGNKQPKVI 237
Query 248 TKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
TKK A A +K R KR ATK YNV QAFG RGP Q NFGD + GT+ WPQIA+
Sbjct 238 TKKDAQAAKQKMRHKRVATKGYNVVQAFGMRGPGPLQSNFGDMQYNKLGTEDPRWPQIAE 297
Query 308 FAPSASAFFGMSRIGMEVTPS------GTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAY 361
APSASAF S+ + + +L+Y GAIKLD K+P + + +L+ +IDAY
Sbjct 298 LAPSASAFMSTSQFKVTHQSNDENGEPVYFLSYSGAIKLDPKNPNYNKWMEILDANIDAY 357
Query 362 KTFPPTE-------------PKKDKKKKTDEAQPLPQRQKK 389
K+FP E P + + E P QR+K+
Sbjct 358 KSFPKKERKQKPSGDDAATAPATSQMEDVPELPPKQQRKKR 398
>sp|K9N4V7|NCAP_MERS1 Nucleoprotein OS=Middle East respiratory
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)
OX=1263720 GN=N PE=1 SV=1
Length=411
Score = 347 bits (890), Expect = 8e-116, Method: Composition-based stats.
Identities = 195/403 (48%), Positives = 251/403 (62%), Gaps = 24/403 (6%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR ++F D T+ N + GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRAVSFADNNDITNTNLSRGR-GRNPK---PRAAPNNTVSWYTGLTQHGKVPLTFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS P GY+RR R++ G+G +K+L+PRWYFYY GTGPEA+LP+ A K+G
Sbjct 61 QGVPLNANSTPAQNAGYWRRQDRKINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV +GA + P GTRNPNN++A V Q GT LPK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVHEDGATDAPST-FGTRNPNNDSAIVTQFAPGTKLPKNFHIEGTGGNSQSSSRASSV 178
Query 191 SRGNSRNSTPGS-----SRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQ 245
SR +SR+S+ GS +RG SP SG G LL LD LN+L++ SGK +Q Q +
Sbjct 179 SRNSSRSSSQGSRSGNSTRGTSPG--PSGIGAVGGDLLYLDLLNRLQALESGKVKQSQPK 236
Query 246 TVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
+TKK AA A K R KRT+TK +N+ QAFG RGP QGNFGD L + GT+ WPQI
Sbjct 237 VITKKDAAAAKNKMRHKRTSTKSFNMVQAFGLRGPGDLQGNFGDLQLNKLGTEDPRWPQI 296
Query 306 AQFAPSASAFFGMSRIGMEVTPS------GTWLTYHGAIKLDDKDPQFKDNVILLNKHID 359
A+ AP+ASAF GMS+ + + +L Y GAIKLD K+P + + LL ++ID
Sbjct 297 AELAPTASAFMGMSQFKLTHQNNDDHGNPVYFLRYSGAIKLDPKNPNYNKWLELLEQNID 356
Query 360 AYKTFPPTEPKKDKKKKTDEAQ----PLPQRQKKQPTVTLLPA 398
AYKTFP E K+ K+ Q P R + P+
Sbjct 357 AYKTFPKKEKKQKAPKEESTDQMSEPPKEHRVQGTQRTRTRPS 399
>sp|A3EXH0|NCAP_BCHK9 Nucleoprotein OS=Bat coronavirus HKU9 OX=694006
GN=N PE=3 SV=1
Length=468
Score = 348 bits (892), Expect = 3e-115, Method: Composition-based stats.
Identities = 167/395 (42%), Positives = 220/395 (56%), Gaps = 17/395 (4%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNN---QNGGRNGARPKQ----------RRPQGLP 47
MS + +P++TF +D +D+ +NG RNGARPK +P+ P
Sbjct 1 MSGRNRSRSGTPSPKVTFKQESDGSDSESERRNGNRNGARPKNNNSRGSAPKPEKPKAAP 60
Query 48 NNTASWFTALTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSP 107
SWF L Q GK ELRFPRG+GVP++ + GY+ R R + G GK +P
Sbjct 61 PQNVSWFAPLVQTGKAELRFPRGEGVPVSQGVDSTYEHGYWLRTQRSFQKG-GKQVLANP 119
Query 108 RWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTT 167
RWYFYY GTG L +G IVWV EGA +GTRNP+N+ A +QL G
Sbjct 120 RWYFYYTGTGRFGDLRFGTKNPDIVWVGQEGANINRLGDMGTRNPSNDGAIPVQLAGG-- 177
Query 168 LPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDR 227
+PKGFYAEG + S S + SR +SR ++ SSRG SP R A+ L+ +
Sbjct 178 IPKGFYAEGRGSRGNSRSSSRNSSRASSRGNSRASSRGASPGRPAANPSTEPWMAYLVQK 237
Query 228 LNQLESKVSGKGQ-QQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGN 286
L +LES+VSG + VTK AA +KK R KRTA K VT +GRRGP +GN
Sbjct 238 LERLESQVSGTKPATKNPVQVTKNEAAANAKKLRHKRTAHKGSGVTVNYGRRGPGDLEGN 297
Query 287 FGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQ 346
FGD+++I+ GTD + AQ AP+ S+F MS + WL Y GAIKL DP
Sbjct 298 FGDREMIKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTRDEDDALWLHYKGAIKLPKDDPN 357
Query 347 FKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQ 381
++ +L ++++AYK FPPTEPKKDKKKK + AQ
Sbjct 358 YEQWTKILAENLNAYKDFPPTEPKKDKKKKEETAQ 392
>sp|Q0Q4E6|NCAP_BC133 Nucleoprotein OS=Bat coronavirus 133/2005
OX=389230 GN=N PE=3 SV=1
Length=424
Score = 337 bits (865), Expect = 8e-112, Method: Composition-based stats.
Identities = 184/403 (46%), Positives = 237/403 (59%), Gaps = 30/403 (7%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR I+F D+ N Q GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRTISFADNNDNQPNQQQRGR-GRNPK---PRPAPNNTVSWYTGLTQHGKNPLAFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS GY+RR R++ G+G +K+L+PRW+FYY GTGPEA+LP+ + K+G
Sbjct 61 QGVPLNANSTTAQNAGYWRRQDRKINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV EGA + P GTRNP N+AA V Q GT +PK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVYEEGATDAP-SVFGTRNPANDAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSN 178
Query 191 SRGNSRNSTP-----GSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQ 245
SR +SR+++ +SRG SP G +LA L L Q G+ +Q +
Sbjct 179 SRNSSRSNSRGGRSTSNSRGTSPVSHGV-GSAESLAALPLLLDLQKRLADLESGKSKQPK 237
Query 246 TVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
VTKK AA A K R KR ATK +NVTQAFG RGP QGNFGD + + GT+ WPQ+
Sbjct 238 VVTKKDAAAAKNKMRHKRVATKGFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQM 297
Query 306 AQFAPSASAFFGMSRIGMEVTPSG------TWLTYHGAIKLDDKDPQFKDNVILLNKHID 359
A+ APSASAF MS+ + + +L+Y GAIKLD K+P +K + LL +ID
Sbjct 298 AELAPSASAFMSMSQFKLTHQSNDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLEANID 357
Query 360 AYKTFPPTE-----------PKKDKKKKTDEAQPLPQRQKKQP 391
AYKTFP E + ++ PQR+ K
Sbjct 358 AYKTFPKKERKPKTTEDGAVVASSSASQMEDVDAKPQRKPKSR 400
>sp|Q96605|NCAP_IBVV1 Nucleoprotein OS=Avian infectious bronchitis
virus (strain V18/91) OX=231427 GN=N PE=2 SV=1
Length=409
Score = 337 bits (863), Expect = 9e-112, Method: Composition-based stats.
Identities = 93/384 (24%), Positives = 163/384 (42%), Gaps = 30/384 (8%)
Query 12 SAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFP--- 68
SA ++ F P ++N G P+ ASWF +L + K+ P
Sbjct 2 SAGKLKFDSPAPILKLSKNTG-------STPPKVGGTGQASWFQSLKE--KKRTGTPPTF 52
Query 69 RGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK 128
G GVP N+N P Q GY++R R + G G K ++ WYFYY GTGP L +G +
Sbjct 53 EGSGVPDNSNVKPQFQHGYWKRQ-HRYKPGKGGRKPVADAWYFYYTGTGPFGDLKWGDSN 111
Query 129 EGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS 188
+ +VWV +GA + + G R+P+ L+ +G G + +
Sbjct 112 DDVVWVKAKGADTSKIGNYGVRDPDKFDQAPLRFTEG----------GPDNNYRWDFIAL 161
Query 189 SRSRGNSRNSTPGSSRGNSPARMASGGG-ETALALLLLDRLNQLESKVSGKGQQQQGQTV 247
+R R + ++ +R +S G + + L+DR ++ + QQ+ G +
Sbjct 162 NRGRSRNSSAVTSRENSRPGSRDSSRGRQRSRVDDDLIDRAAKIIMQ-----QQKNGSRI 216
Query 248 TKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQ 307
+K+ A E +++ KR + + FG+R Q NFGD +I +G +
Sbjct 217 SKQKANEMAERKYHKRAIAPGKRIDEVFGQRRKGQAP-NFGDDKMIEEGVKDGRLTAMLN 275
Query 308 FAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPT 367
P+ A S + ++ P G + + + +DPQF + + ++ +D T P
Sbjct 276 LVPTPHACLLGSMVTAKLQPDGLHVRFSFETVVKREDPQFANYSKICDECVDGVGTRPKD 335
Query 368 EPKKDKKKKTDEAQPLPQRQKKQP 391
+P + + + P K+Q
Sbjct 336 DPTPRSRAASKDRNSAPATPKQQR 359
>sp|A3EXA1|NCAP_BCHK4 Nucleoprotein OS=Bat coronavirus HKU4 OX=694007
GN=N PE=3 SV=1
Length=423
Score = 337 bits (864), Expect = 1e-111, Method: Composition-based stats.
Identities = 186/402 (46%), Positives = 238/402 (59%), Gaps = 29/402 (7%)
Query 12 SAPR-ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRG 70
+APR I+F D+ N Q GR G PK P+ PNNT SW+T LTQHGK L FP G
Sbjct 5 AAPRTISFADNNDNQPNQQQRGR-GRNPK---PRPAPNNTVSWYTGLTQHGKNPLAFPPG 60
Query 71 QGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEG 130
QGVP+N NS GY+RR R++ G+G +K+L+PRW+FYY GTGPEA+LP+ + K+G
Sbjct 61 QGVPLNANSTTAQNAGYWRRQDRKINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVKDG 119
Query 131 IVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSR 190
IVWV EGA + P GTRNP N+AA V Q GT +PK F+ EG+ G SQ+SSR+SS
Sbjct 120 IVWVYEEGATDAP-SVFGTRNPANDAAIVCQFAPGTLIPKNFHIEGTGGNSQSSSRASSN 178
Query 191 SRGNSRNSTPG-----SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQ 245
SR +SR+S+ G +SRG SP G +LA L L Q G+ +Q +
Sbjct 179 SRNSSRSSSRGGRSTSNSRGTSPVSHGV-GSAESLAALPLLLDLQKRLADLESGKSKQPK 237
Query 246 TVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQI 305
VTKK AA A K R KR ATK +NVTQAFG RGP QGNFGD + + GT+ WPQ+
Sbjct 238 VVTKKDAAAAKNKMRHKRVATKGFNVTQAFGLRGPGPLQGNFGDMNYNKFGTEDPRWPQM 297
Query 306 AQFAPSASAFFGMSRIGMEVTPSG------TWLTYHGAIKLDDKDPQFKDNVILLNKHID 359
A+ APSASAF MS+ + + +L+Y GAIKLD K+P +K + LL +ID
Sbjct 298 AELAPSASAFMSMSQFKLTHQSNDDKGDPIYFLSYSGAIKLDPKNPNYKKWLELLESNID 357
Query 360 AYKTFPPTE----------PKKDKKKKTDEAQPLPQRQKKQP 391
AYKTFP E + ++ PQR+ K
Sbjct 358 AYKTFPKKERKPKTTEDGAVASSSASQMEDVDAKPQRKPKSR 399
>sp|Q04700|NCAP_CVCAK Nucleoprotein OS=Canine coronavirus (strain
K378) OX=33732 GN=N PE=3 SV=1
Length=382
Score = 305 bits (782), Expect = 6e-100, Method: Composition-based stats.
Identities = 102/378 (27%), Positives = 177/378 (47%), Gaps = 28/378 (7%)
Query 30 NGGRNGARPKQRRPQGLPNNTASWFTALT-QHGKEELRFPRGQGVPINTNSGPDDQIGYY 88
R + + R+ +P S+F +T Q G + VP + D QIGY+
Sbjct 15 TKKRGLSNSRGRKNNTIP---LSFFNPITLQQGSKFWNLCPRDFVPKGIGNK-DQQIGYW 70
Query 89 RRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIG 148
R +R R G+ KEL RW+FYYLGTGP A + +G+VWVA +GA+N P +G
Sbjct 71 NRQSR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDRIDGVVWVAKDGAMNKPTT-LG 128
Query 149 TRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSP 208
R NN + L +P F E ++ + S S SRS+ +R+ + G + N+
Sbjct 129 NRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSPSQSRSQSRNRSQSRGRQQSNNK 185
Query 209 ARMAS-GGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATK 267
+ AL L +D + + + S +++ + T+ + + K KRTA K
Sbjct 186 KDDSVEQAVLAALKKLGVD--TEKQQQRSRSKSKERSNSKTRDTTPKNENKHTWKRTAGK 243
Query 268 QYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTP 327
+VT+ +G R + NFGD DL+ G KH+PQ+A+ PS S+ S +
Sbjct 244 G-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVSSILFGSYWTAKEDG 299
Query 328 SGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQ 387
+T+ L DP+ + + I+AY P+E K+++++ ++ + +
Sbjct 300 DQIEVTFTHKYHLPKDDPKTGQFL----QQINAYAR--PSEVAKEQRQRKARSKSAERVE 353
Query 388 KKQPTVTLLPAADMDDFS 405
++ ++P A ++++
Sbjct 354 QE-----VVPDALTENYT 366
>sp|P05991|NCAP_CVPFS Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain FS772/70) OX=11150 GN=N PE=1
SV=1
Length=382
Score = 303 bits (775), Expect = 7e-99, Method: Composition-based stats.
Identities = 109/393 (28%), Positives = 189/393 (48%), Gaps = 35/393 (9%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALT-QHGKEELRFPRGQGV 73
R+++G + + GR+ +R ++ L S+F +T Q G + V
Sbjct 7 RVSWGDES-----TKIRGRSNSRGRKSNNIPL-----SFFNPITLQQGSKFWNLCPRDFV 56
Query 74 PINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
P D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VW
Sbjct 57 PKGIG-NRDQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 134 VATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
VA +GA+N P +G+R NN + L +P F E ++ + SRS SRSR
Sbjct 115 VAKDGAMNKPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRS 170
Query 194 NSRNSTPGSSRGNSPARMAS-GGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSA 252
+R+ + G + N+ + AL L +D + + + S +++ + T+ +
Sbjct 171 RNRSQSRGRQQSNNKKDDSVEQAVLAALKKLGVD--TEKQQQRSCSKSKERSNSKTRDTT 228
Query 253 AEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSA 312
+ K KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS
Sbjct 229 PKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSV 284
Query 313 SAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKD 372
S+ S + +T+ L DP+ + + + I+AY P+E K+
Sbjct 285 SSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDPKTEQFL----QQINAYAR--PSEVAKE 338
Query 373 KKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++K+ ++ + +++ ++P A +++++
Sbjct 339 QRKRKSRSKSAERSEQE-----VVPDALIENYT 366
>sp|P33463|NCAP_CVPR8 Nucleoprotein OS=Porcine respiratory coronavirus
(strain 86/137004 / isolate British) OX=33736 GN=N
PE=3 SV=1
Length=382
Score = 302 bits (772), Expect = 2e-98, Method: Composition-based stats.
Identities = 106/392 (27%), Positives = 187/392 (48%), Gaps = 33/392 (8%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALT-QHGKEELRFPRGQGV 73
R+++G + + GR+ +R ++ + N S+F +T Q G + V
Sbjct 7 RVSWGDES-----TKIRGRSNSRGRK-----INNIPLSFFNPITLQQGAKFWNSCPRDFV 56
Query 74 PINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
P D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VW
Sbjct 57 PKGIG-NRDQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 134 VATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
VA +GA+N P +G+R NN + L +P F E ++ + SRS SRSR
Sbjct 115 VAKDGAMNKPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRS 170
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAA 253
+R+ + G + N+ + AL L + + + S +++ + T+ +
Sbjct 171 RNRSQSRGRQQSNNKKDDSV-EQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTP 229
Query 254 EASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
+ K KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVS 285
Query 314 AFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK 373
+ S + +T+ L P+ + + + I+AY P+E K++
Sbjct 286 SILFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAC--PSEVAKEQ 339
Query 374 KKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
+K+ ++ + +++ ++P + +++++
Sbjct 340 RKRKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|Q7T6S8|NCAP_CVCBG Nucleoprotein OS=Canine coronavirus (strain
BGF10) OX=441619 GN=N PE=3 SV=1
Length=382
Score = 301 bits (771), Expect = 3e-98, Method: Composition-based stats.
Identities = 97/356 (27%), Positives = 167/356 (47%), Gaps = 25/356 (7%)
Query 52 SWFTALTQHGKEEL-RFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWY 110
S+F +T + VP+ + D QIGY+ R R R G+ K+L RW+
Sbjct 34 SFFNPVTLKQGSKFWDLCPRDFVPLKIGNK-DQQIGYWNRQIR-YRMVKGQRKDLPERWF 91
Query 111 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPK 170
FYYLGTGP A + +G+VWVA EGA+ P +GTR NN + L +P
Sbjct 92 FYYLGTGPHADAKFKQKLDGVVWVAKEGAMTKPTT-LGTRGTNNESKA---LKFDVKVPS 147
Query 171 GFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMAS-GGGETALALLLLDRLN 229
F E ++ + SRS SRS+ +R + G + N+ + AL L +D
Sbjct 148 EFQLEVNQSRDNSRSRSQSRSQSRTRAQSRGRQQSNNKKDDSVEQAVLAALKKLGVD--T 205
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGD 289
+ + + + +++ + T+ + + K KRTA K +VT+ +G R + NFGD
Sbjct 206 EKQQQRARSKSKERSNSKTRDTTPKNENKHTWKRTAGKG-DVTKFYGARS---SSANFGD 261
Query 290 QDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKD 349
DL+ G KH+PQ+A+ PS S+ S + +T+ L DP+
Sbjct 262 SDLVANGNSAKHYPQLAECVPSVSSILFGSHWTAKEDGDQIEVTFTHKYHLPKDDPKTGQ 321
Query 350 NVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
+ + I+AY P+E K+++ + ++ + +++ ++P A ++++
Sbjct 322 FL----QQINAYAR--PSEVAKEQRLRKARSKSAERVEQE-----VVPDALTENYT 366
>sp|P24411|NCAP_CVPRM Nucleoprotein OS=Porcine respiratory coronavirus
(strain RM4) OX=11148 GN=N PE=3 SV=1
Length=382
Score = 300 bits (768), Expect = 9e-98, Method: Composition-based stats.
Identities = 107/392 (27%), Positives = 187/392 (48%), Gaps = 33/392 (8%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALT-QHGKEELRFPRGQGV 73
R+++G + + GR+ +R ++ L S+F +T Q G + V
Sbjct 7 RVSWGDES-----TKIRGRSNSRGRKINNIPL-----SFFNPITLQQGAKFWNSCPRDFV 56
Query 74 PINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
P D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VW
Sbjct 57 PKGIG-NRDQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 134 VATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
VA +GA+N P +G+R NN + L +P F E ++ + SRS SRSR
Sbjct 115 VAKDGAMNKPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRS 170
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAA 253
+R+ + G + N+ S AL L + + + S +++ + T+ +
Sbjct 171 RNRSQSRGRQQSNNKKDD-SVEQAVLAALKKLGVYTEKQQQRSRSKSKERSNSKTRDTTP 229
Query 254 EASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
+ K KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS S
Sbjct 230 KNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDSDLVANGSSAKHYPQLAECVPSVS 285
Query 314 AFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK 373
+ S + +T+ L P+ + + + I+AY + P+E K++
Sbjct 286 SILFGSYWTSKEDGDQIEVTFTHKYHLPKDHPKTEQFL----QQINAYAS--PSELAKEQ 339
Query 374 KKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
+K+ ++ + +++ ++P + +++++
Sbjct 340 RKRKSRSKSAERSEQE-----VVPDSLIENYT 366
>sp|P25909|NCAP_FIPV Nucleoprotein OS=Feline coronavirus (strain
FIPV WSU-79/1146) OX=33734 GN=N PE=1 SV=1
Length=377
Score = 298 bits (763), Expect = 4e-97, Method: Composition-based stats.
Identities = 97/348 (28%), Positives = 162/348 (47%), Gaps = 23/348 (7%)
Query 52 SWFTALTQHGKEEL-RFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWY 110
S++ +T + VP + D QIGY+ R R R G+ KEL+ RW+
Sbjct 34 SFYNPITLEQGSKFWNLCPRDLVPKGIGNK-DQQIGYWNRQIR-YRIVKGQRKELAERWF 91
Query 111 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPK 170
FY+LGTGP A + +G+ WVA +GA+N P +GTR NN + L+ +P
Sbjct 92 FYFLGTGPHADAKFKDKIDGVFWVARDGAMNKPTT-LGTRGTNNESK-PLRF--DGKIPP 147
Query 171 GFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQ 230
F E +R + + S S SRS +R+ + G N+ +L++L
Sbjct 148 QFQLEVNRSRNNSRSGSQSRSVSRNRSQSRGRHHSNNQNNNVEDTIVA-----VLEKLGV 202
Query 231 LESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQ 290
+ + S +++ + + + + + K K+TA K +VT +G R + NFGD
Sbjct 203 TDKQRSRSKPRERSDSKPRDTTPKNANKHTWKKTAGKG-DVTTFYGARS---SSANFGDS 258
Query 291 DLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDN 350
DL+ G K +PQIA+ PS S+ S+ E +T L D +
Sbjct 259 DLVANGNAAKCYPQIAECVPSVSSIIFGSQWSAEEAGDQVKVTLTHTYYLPKDDAKTSQF 318
Query 351 VILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPA 398
+ + IDAYK P+E KD++++ ++ ++ ++ +VTL+ A
Sbjct 319 L----EQIDAYKR--PSEVAKDQRQRRSRSKSA-DKKPEELSVTLVEA 359
>sp|P04134|NCAP_CVPPU Nucleoprotein OS=Porcine transmissible gastroenteritis
coronavirus (strain Purdue) OX=11151 GN=N PE=1
SV=2
Length=382
Score = 297 bits (761), Expect = 9e-97, Method: Composition-based stats.
Identities = 109/393 (28%), Positives = 187/393 (48%), Gaps = 35/393 (9%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALT-QHGKEELRFPRGQGV 73
R+++G + + GR+ +R ++ L S+F +T Q G + V
Sbjct 7 RVSWGDES-----TKTRGRSNSRGRKNNNIPL-----SFFNPITLQQGSKFWNLCPRDFV 56
Query 74 PINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
P D QIGY+ R TR R G+ KEL RW+FYYLGTGP A + +G+VW
Sbjct 57 PKGIG-NRDQQIGYWNRQTR-YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKLDGVVW 114
Query 134 VATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
VA +GA+N P +G+R NN + L +P F E ++ + SRS SRSR
Sbjct 115 VAKDGAMNKPTT-LGSRGANNESKA---LKFDGKVPGEFQLEVNQSRDNSRSRSQSRSRS 170
Query 194 NSRNSTPGSSRGNSPARMAS-GGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSA 252
+R+ + G + N+ + AL L +D + + + S +++ + T+ +
Sbjct 171 RNRSQSRGRQQFNNKKDDSVEQAVLAALKKLGVD--TEKQQQRSRSKSKERSNSKTRDTT 228
Query 253 AEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSA 312
+ K KRTA K +VT+ +G R + NFGD DL+ G+ KH+PQ+A+ PS
Sbjct 229 PKNENKHTWKRTAGKG-DVTRFYGARS---SSANFGDTDLVANGSSAKHYPQLAECVPSV 284
Query 313 SAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKD 372
S+ S + +T+ L DP+ + + I+AY P+E K+
Sbjct 285 SSILFGSYWTSKEDGDQIEVTFTHKYHLPKDDPKTGQFL----QQINAYAR--PSEVAKE 338
Query 373 KKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
++K+ ++ + ++ ++P A +++++
Sbjct 339 QRKRKSRSKSAERSEQD-----VVPDALIENYT 366
>sp|P36298|NCAP_CVCAI Nucleoprotein OS=Canine coronavirus (strain
Insavc-1) OX=36391 GN=N PE=3 SV=1
Length=381
Score = 289 bits (740), Expect = 1e-93, Method: Composition-based stats.
Identities = 99/392 (25%), Positives = 179/392 (46%), Gaps = 34/392 (9%)
Query 15 RITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEEL-RFPRGQGV 73
R+++G + R + + R+ +P S+F +T + V
Sbjct 7 RVSWGDES-------TKRRGRSNSRGRKNNDIP---LSFFNPITLEQGSKFWDLCPRDFV 56
Query 74 PINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVW 133
P + D QIGY+ R TR R G+ K L +W+FYYLGTGP A + +G+VW
Sbjct 57 PKGIGNK-DQQIGYWNRQTR-YRMVKGRRKNLPEKWFFYYLGTGPHADAKFKQKLDGVVW 114
Query 134 VATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
VA ++ P +GTR NN + L +P F+ E ++ + SRS SRS+
Sbjct 115 VARGDSMTKPTT-LGTRGTNNESKA---LKFDVKVPSEFHLEVNQLRDNSRSRSQSRSQS 170
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAA 253
+R+ + G N+ + LA L ++ + + S +++ + T+ +
Sbjct 171 RNRSQSRGRQLSNNKKDD--NVEQAVLAALKKLGVDTEKQQRSRSKSKERSSSKTRDTTP 228
Query 254 EASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSAS 313
+ K KRTA K +VT+ +G R + NFGD DL+ G KH+PQ+A+ PS S
Sbjct 229 KNENKHTWKRTAGKG-DVTKFYGARS---SSANFGDSDLVANGNGAKHYPQLAECVPSVS 284
Query 314 AFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDK 373
+ S + +T+ L DP+ + + I+AY P+E K++
Sbjct 285 SILFGSHWTAKEDGDQIEVTFTHKYHLPKDDPKTGQFL----QQINAYAR--PSEVAKEQ 338
Query 374 KKKTDEAQPLPQRQKKQPTVTLLPAADMDDFS 405
+++ ++ + + +++ ++P A ++++
Sbjct 339 RQRKARSKSVERVEQE-----VVPDALTENYT 365
>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005
OX=693999 GN=N PE=1 SV=1
Length=394
Score = 275 bits (703), Expect = 7e-88, Method: Composition-based stats.
Identities = 92/363 (25%), Positives = 144/363 (40%), Gaps = 28/363 (8%)
Query 42 RPQGLPNNTA--SWFTALTQHGKEEL-RFPRGQGVPINTNSGPDDQIGYYRRATRRVRGG 98
+P+G S F L ++ L + VP G D QIGY+ R R
Sbjct 7 QPRGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMG-GKDQQIGYWVEQQR-WRMR 64
Query 99 DGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRN------- 151
G +L W+FY+LGTGP + LP+ +G+ WVA +GA P +G R
Sbjct 65 RGDRVDLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKTQPTG-LGVRKSSEKPLV 123
Query 152 -------PNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSS-SRSRGNSRNSTPGSS 203
PNN P + + G + S+ +S++ +SR SRN + +
Sbjct 124 PKFKNKLPNNVEIVEPTTPNNSRANSRSRSRGGQSNSRGNSQNRGDKSRNQSRNRSQSND 183
Query 204 RGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKR 263
RG+ + AL L + SGK + AEA KP +R
Sbjct 184 RGSDSRDDLVAAVKKALEDLGVGAAKPKGKTQSGKNTPKNKSRSGSVQRAEAKDKPEWRR 243
Query 264 TATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGM 323
T + +V FG RG + NFG + + +G + + Q A P A+A +
Sbjct 244 TPSGDESVEVCFGPRGGTR---NFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVAT 300
Query 324 EVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPL 383
+ G +TY + + D N+ + +DAYK P +K K+ +T +P
Sbjct 301 KEMADGVEITYTYKMLVPKDD----KNLEIFLAQVDAYKLGDPKPQRKVKRSRTPTPKPA 356
Query 384 PQR 386
+
Sbjct 357 TEP 359
>sp|Q07499|NCAP_PEDV7 Nucleoprotein OS=Porcine epidemic diarrhea
virus (strain CV777) OX=229032 GN=N PE=1 SV=1
Length=441
Score = 251 bits (640), Expect = 8e-78, Method: Composition-based stats.
Identities = 97/371 (26%), Positives = 147/371 (40%), Gaps = 68/371 (18%)
Query 52 SWFTALTQHGKEEL-RFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWY 110
S + L + L + VP N + D QIGY+ R R G+ E W+
Sbjct 17 SLYAPLRVTNDKPLSKVLANNAVPTNKGNK-DQQIGYWNEQIR-WRMRRGERIEQPSNWH 74
Query 111 FYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV---------LQ 161
FYYLGTGP L Y EG+ WVA EGA P ++G R + ++
Sbjct 75 FYYLGTGPHGDLRYRTRTEGVFWVAKEGAKTEPT-NLGVRKASEKPIIPKFSQQLPSVVE 133
Query 162 LPQGTTLP--KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMAS------ 213
+ + T P + SRG SRS S +RGN+++ +RGN+ R AS
Sbjct 134 IVEPNTPPASRANSRSRSRGNGNNRSRSPSNNRGNNQSRGNSQNRGNNQGRGASQNRGGN 193
Query 214 -------------------GGGETALALLLLDRLNQLESKVSGKGQQQQ----------- 243
GG T+ L+ + L+S G+ +
Sbjct 194 NNNNNKSRNQSNNRNQSNDRGGVTSRDDLVAAVKDALKSLGIGENPDRHKQQQKPKQEKS 253
Query 244 ---GQTVTKKSAAEASKK-------PRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQDLI 293
G+ KK+ + A+ K P +R + +V FG RG + NFGD + +
Sbjct 254 DNSGKNTPKKNKSRATSKERDLKDIPEWRRIPKGENSVAACFGPRGGFK---NFGDAEFV 310
Query 294 RQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVIL 353
+G D + QIA AP+ +A + + +TY+ + + DP V L
Sbjct 311 EKGVDASGYAQIASLAPNVAALLFGGNVAVRELADSYEITYNYKMTVPKSDPN----VEL 366
Query 354 LNKHIDAYKTF 364
L +DA+KT
Sbjct 367 LVSQVDAFKTG 377
>sp|P15130|NCAP_CVH22 Nucleoprotein OS=Human coronavirus 229E
OX=11137 GN=N PE=1 SV=2
Length=389
Score = 244 bits (623), Expect = 5e-76, Method: Composition-based stats.
Identities = 92/410 (22%), Positives = 157/410 (38%), Gaps = 47/410 (11%)
Query 16 ITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPI 75
+ + ++ GR G P S ++ L ++ + VPI
Sbjct 4 VKWADASEP-----QRGRQGRIP------------YSLYSPLLVDSEQPWKVIPRNLVPI 46
Query 76 NTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVA 135
N + IGY+ +R R GK +LSP+ +FYYLGTGP + EG+VWVA
Sbjct 47 NKKDK-NKLIGYWN-VQKRFRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERVEGVVWVA 104
Query 136 TEGALNTPKDHIGTRNPNNNAATVL---QLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR 192
+GA P + G R N+ +LP G T+ + + SQ+ S+S R
Sbjct 105 VDGAKTEPTGY-GVRRKNSEPEIPHFNQKLPNGVTVVEEPDSRAPS-RSQSRSQSRGRGE 162
Query 193 GNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKG------------Q 240
++ P S R ++ AL L D+ + + K + G
Sbjct 163 SKPQSRNPSSDRNHNSQDDIMKAVAAALKSLGFDKPQEKDKKSAKTGTPKPSRNQSPASS 222
Query 241 QQQGQTVTKKSAAEAS------KKPRQKRTATKQ--YNVTQAFGRRGPEQTQGNFGDQDL 292
Q +++ + ++E +KPR KR NVTQ FG R NFG +
Sbjct 223 QTSAKSLARSQSSETKEQKHEMQKPRWKRQPNDDVTSNVTQCFGPR---DLDHNFGSAGV 279
Query 293 IRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVI 352
+ G K +PQ A+ PS +A S I + + + LT+ + + P +
Sbjct 280 VANGVKAKGYPQFAELVPSTAAMLFDSHIVSKESGNTVVLTFTTRVTVPKDHPHLGKFLE 339
Query 353 LLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMD 402
LN + P P + + + + + + ++ +++
Sbjct 340 ELNAFTREMQQHPLLNPSALEFNPSQTSPATAEPVRDEVSIETDIIDEVN 389
>sp|Q6Q1R8|NCAP_CVHNL Nucleoprotein OS=Human coronavirus NL63
OX=277944 GN=N PE=1 SV=1
Length=377
Score = 232 bits (591), Expect = 2e-71, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 143/334 (43%), Gaps = 21/334 (6%)
Query 57 LTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGT 116
L K R VPI + D+QIGY+ R R G+ +L P+ +FYYLGT
Sbjct 26 LVSSDKAPYRVIPRNLVPIGKGNK-DEQIGYWN-VQERWRMRRGQRVDLPPKVHFYYLGT 83
Query 117 GPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAATV---LQLPQGTTLPKGFY 173
GP L + +G+VWVA EGA +G R N + LP ++ +
Sbjct 84 GPHKDLKFRQRSDGVVWVAKEGAKT-VNTSLGNRKRNQKPLEPKFSIALPPELSVVEFED 142
Query 174 AEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLL------DR 227
+ + + S + + SR +SR+++ SR S + +S A+ L L
Sbjct 143 RSNNSSRASSRSSTRNNSRDSSRSTSRQQSRTRSDSNQSSSDLVAAVTLALKNLGFDNQS 202
Query 228 LNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNF 287
+ S S + + + + KKPR KR T++ NV Q FG R N
Sbjct 203 KSPSSSGTSTPKKPNKPLSQPRADKPSQLKKPRWKRVPTREENVIQCFGPR---DFNHNM 259
Query 288 GDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQF 347
GD DL++ G D K +PQ+A+ P+ +A F S + + +TY + + +
Sbjct 260 GDSDLVQNGVDAKGFPQLAELIPNQAALFFDSEVSTDEVGDNVQITYTYKMLVAKDNKNL 319
Query 348 KDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQ 381
+ + I A+ P+ K+ + + + AQ
Sbjct 320 PKFI----EQISAFTK--PSSIKEMQSQSSHVAQ 347
>sp|A9KNW4|IF2_LACP7 Translation initiation factor IF-2 OS=Lachnoclostridium
phytofermentans (strain ATCC 700394 / DSM 18823
/ ISDg) OX=357809 GN=infB PE=3 SV=1
Length=1131
Score = 44.8 bits (104), Expect = 0.002, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 102/335 (30%), Gaps = 74/335 (22%)
Query 1 MSDNGPQSNQRSAPRITFGGPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQH 60
M+ G + N T G T+S DN Q+ G + RRPQG T
Sbjct 98 MTAQGERKNMSEQNVTT--GSTESEDNIQSVGDRKYQHTDRRPQGNNGEGP---QTSTNS 152
Query 61 GKEELRFPRGQGV---------------PINTNSGPDDQIGYYRRATRRVRGGD------ 99
G P+GQG P N + G RR GD
Sbjct 153 GDRR---PQGQGSYGDRRPQGQNSGDRRPYNGDRPQGQNSG-----DRRPYNGDRPQGQN 204
Query 100 -GKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAT 158
G + Y G P+ YG + + G R P N
Sbjct 205 SGDRRP--------YNGDRPQGQGNYGDRRP-------------QGQNSGDRRPYNGDRP 243
Query 159 VLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGET 218
Q G P+G + G R + + G+ R GS P S G
Sbjct 244 QGQGNYGDRRPQGQGSYGDRRPNSGDRPQGQGNYGDRRPQGQGSYGDRRPQGQGSYGDRP 303
Query 219 ALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRR 278
DR +GQ G + + ++P+ + + + ++G R
Sbjct 304 QGQGSYGDR---------PQGQGSYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDR 354
Query 279 GPE---------QTQGNFGDQDLIRQGTDYKHWPQ 304
P+ Q QGN+GD+ QG+ PQ
Sbjct 355 RPQGQGSYGDRPQGQGNYGDRRPGGQGSYGDRRPQ 389
>sp|Q318P8|IF2_PROM9 Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain MIT 9312) OX=74546 GN=infB PE=3
SV=1
Length=1128
Score = 41.3 bits (95), Expect = 0.016, Method: Composition-based stats.
Identities = 44/258 (17%), Positives = 71/258 (28%), Gaps = 40/258 (16%)
Query 20 GPTDSTDNNQNGGRNGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNS 79
+ + N+ + +P Q R + P N+ P G PI +
Sbjct 192 ESSKNIPNSGDKRELSLKPDQNRNKPKPKNS-----------NNRRNTPELVGAPIRRDD 240
Query 80 GPDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGA 139
+ + R GT +P G
Sbjct 241 PNKQN----NKQNITFKQTVSNRPGTPNR-----PGTPNRPGMPNRP-----------GL 280
Query 140 LNTPKD----HIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNS 195
N P D R N N A P P +G + +R ++ +R +
Sbjct 281 RNKPTDQGRPGSFNRQANPNRAGAPNRPGMPNRPGLRNKPTDQGRPGSFNRQANPNRAGA 340
Query 196 RNS----TPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGK-GQQQQGQTVTKK 250
N SR NS + LL L + N+ E K Q+Q K+
Sbjct 341 PNRPGMPNRPGSRFNSQKSTGIRKPVSPNELLQLQKTNKSEKDTLAKTNNQKQNIESPKQ 400
Query 251 SAAEASKKPRQKRTATKQ 268
A + +P ++ K
Sbjct 401 KAKAPASRPNAVPSSKKP 418
>sp|O61345|PENG_DROME Protein penguin OS=Drosophila melanogaster
OX=7227 GN=peng PE=2 SV=1
Length=737
Score = 40.5 bits (93), Expect = 0.030, Method: Composition-based stats.
Identities = 25/142 (18%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query 136 TEGALNTPKDHIGTRNPNNNA--ATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRG 193
G P G R + A + G K F G G + ++ +
Sbjct 29 ANGQKFKPGGAGGARKFDKFGGGAGKSFVKPGAGGAKKFDKSGPGGFKKFDKSGATGDKR 88
Query 194 NSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAA 253
N G + A + G + ++ + + S K + ++K+ A
Sbjct 89 LGGNKFRGKPQTQPQA--PAEGEKQDWNKFKKEKKDLKLKRKSAKDTYE----ISKE-AN 141
Query 254 EASKKPRQKRTATKQYNVTQAF 275
+ +K R +RT K V Q +
Sbjct 142 QIHEKLRCRRTENKDKLVEQIY 163
>sp|Q11HD9|TRMFO_CHESB Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Chelativorans sp. (strain BNC1)
OX=266779 GN=trmFO PE=3 SV=2
Length=468
Score = 39.8 bits (91), Expect = 0.041, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 21/133 (16%)
Query 276 GRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQF----APSASAFFGMSRIGMEVTPSGTW 331
G R Q G G + G + A+ P + S I
Sbjct 343 GLRFAGQITGCEGYVESAAMGLMAGRFAAAARLGRKMMPPPATTAFGSLIS--------- 393
Query 332 LTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQP 391
G L + +P + + +++ + FPP E K + K+ + + K+
Sbjct 394 -HITGGHILSEDEPGKRSFQPM---NVN-FGLFPPVELPKPEGKR---LRGKEKTLAKKR 445
Query 392 TVTLLPAADMDDF 404
+T AD D+
Sbjct 446 AITARALADCSDW 458
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5
homolog A OS=Mus musculus OX=10090 GN=Pds5a PE=1 SV=3
Length=1332
Score = 39.4 bits (90), Expect = 0.065, Method: Composition-based stats.
Identities = 28/148 (19%), Positives = 49/148 (33%), Gaps = 6/148 (4%)
Query 142 TPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPG 201
P +GT N + S+ S + SRSR S ++
Sbjct 1135 KPTGVLGT---VNKPLSATGRKPYVRSAGTETGSNINANSELSPSAGSRSREQSSEASET 1191
Query 202 --SSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKP 259
S +P R+ S + + +N +S + + + + AE +KP
Sbjct 1192 GVSENEENPVRIISVTPVKNIDTVKNKEINSDQSTQGNISSDRGKKRIVTAAGAENIQKP 1251
Query 260 RQK-RTATKQYNVTQAFGRRGPEQTQGN 286
+K + GRR ++QGN
Sbjct 1252 DEKVDESGPPAPSKPRRGRRPKSESQGN 1279
>sp|Q52EB3|ATG1_PYRO7 Serine/threonine-protein kinase ATG1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
OX=242507 GN=ATG1 PE=1 SV=1
Length=982
Score = 38.6 bits (88), Expect = 0.12, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query 141 NTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTP 200
N P D++ R P +T G Y E RG S AS S+R + ++
Sbjct 429 NEPGDNLVPRRPQAQPSTSAPSKPGL------YEERRRGISNASLNRSNRESSSPTSAAL 482
Query 201 GSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPR 260
+ +P + S + ++ Q + ++ A E + PR
Sbjct 483 ANDSARAPPQQTSRRVQAEER----EKAAQDVAFERDYVVVEKKHVEVNAFADEMAANPR 538
>sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3 OS=Arabidopsis thaliana
OX=3702 GN=UVH3 PE=2 SV=1
Length=1479
Score = 38.6 bits (88), Expect = 0.14, Method: Composition-based stats.
Identities = 20/108 (19%), Positives = 34/108 (31%), Gaps = 1/108 (1%)
Query 148 GTRNPNNNAATVLQLPQGTTLPKGFYAEGSR-GGSQASSRSSSRSRGNSRNSTPGSSRGN 206
G R N + T K + + S SRG R G RG
Sbjct 1223 GPRKRNKKKVAPHETEDNNTSDKDSPIANEKVKNKRKRLEKPSSSRGRGRAQKRGRGRGR 1282
Query 207 SPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAE 254
+ ++ D++ +LE+K + + + + SA E
Sbjct 1283 VQKDLLELSDGSSDDDDDDDKVVELEAKPANLQKSTRSRNPVMYSAKE 1330
>sp|P49797|RGS3_RAT Regulator of G-protein signaling 3 OS=Rattus
norvegicus OX=10116 GN=Rgs3 PE=1 SV=2
Length=967
Score = 37.8 bits (86), Expect = 0.19, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 4/122 (3%)
Query 149 TRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSP 208
R P+ + + +LP G LP S+ S+ S+ PG
Sbjct 421 ERTPSKDPSPSQELPPGQELPPSKDPSPSQELPPGQELPPSKDPSPSQELPPGQEL--PS 478
Query 209 ARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQT--VTKKSAAEASKKPRQKRTAT 266
++ S E L R + + G + T ++ ++ + K +
Sbjct 479 SKNPSPSQELPAGQDLPPRKESFSGQEAAPGPESPSSEDIATCQNPPQSPETSTSKDSPP 538
Query 267 KQ 268
Q
Sbjct 539 GQ 540
>sp|O17087|GLD2_CAEEL Poly(A) RNA polymerase gld-2 OS=Caenorhabditis
elegans OX=6239 GN=gld-2 PE=1 SV=2
Length=1113
Score = 37.8 bits (86), Expect = 0.22, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 30/97 (31%), Gaps = 1/97 (1%)
Query 177 SRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVS 236
S S SR N + + + +A +++ + +
Sbjct 1018 SSSNPGNGSTGPRSSRSNENVRDSSRQQNSQKGSSGVSVSKENVASTTGVPVDKKQQNSN 1077
Query 237 GKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQ 273
K + + + E + K + ++T NV+Q
Sbjct 1078 RKDDGNRTKRSPMVQSPEPA-KTKSEKTPMASSNVSQ 1113
>sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo
sapiens OX=9606 GN=MARVELD3 PE=2 SV=3
Length=401
Score = 37.1 bits (84), Expect = 0.30, Method: Composition-based stats.
Identities = 14/88 (16%), Positives = 20/88 (23%), Gaps = 0/88 (0%)
Query 177 SRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVS 236
R + R R S + P R G +
Sbjct 28 GRTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPERDQERDGNRDRNRDRERERERERDPDR 87
Query 237 GKGQQQQGQTVTKKSAAEASKKPRQKRT 264
G + + +KPRQ RT
Sbjct 88 GPRRDTHRDAGPRAGEHGVWEKPRQSRT 115
>sp|Q9JM61|THSD1_MOUSE Thrombospondin type-1 domain-containing
protein 1 OS=Mus musculus OX=10090 GN=Thsd1 PE=1 SV=2
Length=851
Score = 37.5 bits (85), Expect = 0.30, Method: Composition-based stats.
Identities = 38/214 (18%), Positives = 69/214 (32%), Gaps = 14/214 (7%)
Query 141 NTPKDHIGTRNPNNNAATVLQLPQGTTL-PKGFYAEGSRGGSQASSRSSSRSRGNSRNST 199
+ P G R P+ V P G + P + S+ S R S R +SR+S
Sbjct 592 DQPGAGTGERPPSRLDGIVP--PPGCAVSPSQTLIQKSQIRSTG-GRDGSSERCHSRSSL 648
Query 200 PGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKP 259
+ + + E +L+ L ++ S++ Q + +S ++P
Sbjct 649 FRRTASFHETKQSRPFRERSLSALTPRQVPAYSSRMRTWDQMEDRCRPPSRSTHLLPERP 708
Query 260 RQ----KRTATKQYNVTQAFGRRGPEQTQGNFGDQDLIRQGTDYKHWPQIAQFAPSASAF 315
RT++ +++++ P + GD+ K P A PS S
Sbjct 709 EHFQGAGRTSSPLGPLSKSYTVGHPRRKPDP-GDRQAGLVAGAEKMEPHRAHRGPSPS-- 765
Query 316 FGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKD 349
R S +L F+
Sbjct 766 ---HRSASRKQSSPIFLKDSYQKVSQLSPSHFRK 796
>sp|Q5UP83|YL004_MIMIV Putative KilA-N domain-containing protein
L4 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_L4
PE=4 SV=1
Length=454
Score = 37.1 bits (84), Expect = 0.31, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 3/82 (4%)
Query 173 YAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLE 232
Y E S ++ SR+ S + SR+ + + S + L +
Sbjct 15 YIEDSDDETRGRSRNRSIEKSRSRSLDKSQKKSRDKSLTRSRSKSPEKSKSRSKSLTRSR 74
Query 233 SKVSGK---GQQQQGQTVTKKS 251
SK K G ++ + K +
Sbjct 75 SKSPKKCITGNRKNSKHTKKDN 96
>sp|Q5UPJ3|YL116_MIMIV Uncharacterized protein L116 OS=Acanthamoeba
polyphaga mimivirus OX=212035 GN=MIMI_L116 PE=3 SV=1
Length=563
Score = 36.7 bits (83), Expect = 0.39, Method: Composition-based stats.
Identities = 19/106 (18%), Positives = 41/106 (39%), Gaps = 6/106 (6%)
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALL--LLDRLNQLE 232
E S S SR S R + R+ R +R S G ++ LN+
Sbjct 201 ERSHYRSTERSRYRSPERSHYRSPEISRKRSRDESREKSLGRSRKMSRDESREKSLNESH 260
Query 233 SKVSGKGQQQ----QGQTVTKKSAAEASKKPRQKRTATKQYNVTQA 274
+ + Q++ + ++ + + ++ Q+++ KQ +T+
Sbjct 261 KRSRDESQEKSYEPRPAKKLREKSPDEHQEKHQEKSPEKQVEITKP 306
Score = 34.8 bits (78), Expect = 1.6, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 9/114 (8%)
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSR--GNSPARMAS------GGGETALA 221
+ Y R ++ S RSR SR + G SR +R S + +
Sbjct 210 RSRYRSPERSHYRSPEISRKRSRDESREKSLGRSRKMSRDESREKSLNESHKRSRDESQE 269
Query 222 LLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQAF 275
R + + S Q++ Q + + E + KP + A + NV F
Sbjct 270 KSYEPRPAKKLREKSPDEHQEKHQEKSPEKQVEIT-KPLEDYIALPKENVPDVF 322
Score = 34.0 bits (76), Expect = 3.2, Method: Composition-based stats.
Identities = 20/88 (23%), Positives = 31/88 (35%), Gaps = 1/88 (1%)
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLN 229
+ Y R ++ RS RS SR +P SR SP R E + DR +
Sbjct 134 RSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSRYRSPERSHYR-SPDRSH 192
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASK 257
S + + ++ + E S
Sbjct 193 YRSHNKSTERSHYRSTERSRYRSPERSH 220
Score = 33.6 bits (75), Expect = 4.4, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 30/89 (34%), Gaps = 0/89 (0%)
Query 170 KGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLN 229
+ Y R ++ RS RS SR +P S SP R +
Sbjct 150 RSRYRSPERSRYRSPERSRYRSPERSRYRSPERSHYRSPDRSHYRSHNKSTERSHYRSTE 209
Query 230 QLESKVSGKGQQQQGQTVTKKSAAEASKK 258
+ + + + + K+S E+ +K
Sbjct 210 RSRYRSPERSHYRSPEISRKRSRDESREK 238
>sp|A3CQ18|IF2_STRSV Translation initiation factor IF-2 OS=Streptococcus
sanguinis (strain SK36) OX=388919 GN=infB PE=3 SV=1
Length=930
Score = 36.7 bits (83), Expect = 0.47, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (31%), Gaps = 9/134 (7%)
Query 135 ATEGALNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGN 194
A E A + G R P N + +G + RG R +R +
Sbjct 120 AKEEA--ERRKQQGNRKPQNKEQGKREDRDNRNKNRGNSNDRDRGNRPNDRR-DNRGQDG 176
Query 195 SRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQT-VTKKSAA 253
RN + + + R L+++ + + + + + A
Sbjct 177 RRNG-----QNHQGFNGQKRQQPQGPKIDFKARAAALKAEQNAEYARSSEERFKQAQEAK 231
Query 254 EASKKPRQKRTATK 267
E ++ +++ K
Sbjct 232 EVMERQNRRKEQPK 245
>sp|Q7UZZ9|IF2_PROMP Translation initiation factor IF-2 OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / NIES-2087
/ MED4) OX=59919 GN=infB PE=3 SV=1
Length=1169
Score = 35.9 bits (81), Expect = 0.78, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 26/80 (33%), Gaps = 2/80 (3%)
Query 140 LNTPKDHIGTRNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNST 199
N P + +R P++N P G EG + +R + R + N
Sbjct 266 TNRPNSN--SRQPSSNTQISANRPGGQNRQGVPNREGGPYRQGSPNRPGTPYRQGAPNRP 323
Query 200 PGSSRGNSPARMASGGGETA 219
G +R P R G
Sbjct 324 GGQNRQGVPNREGGGPYRQG 343
>sp|A2BT70|IF2_PROMS Translation initiation factor IF-2 OS=Prochlorococcus
marinus (strain AS9601) OX=146891 GN=infB PE=3
SV=1
Length=1126
Score = 35.9 bits (81), Expect = 0.78, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 0/100 (0%)
Query 169 PKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRL 228
P GS +R S + N+ PGS + L L
Sbjct 317 PSDQGRPGSFNRQGNPNRPGSPNGPGMPNNRPGSKFNGQNSSGIRKPVSPNELLQLQKNN 376
Query 229 NQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQ 268
N + K+ K +Q V K+ A + +P ++ K
Sbjct 377 NSEKDKIGIKNNSKQNIEVPKQKAKAPNNRPNATPSSKKP 416
>sp|Q38W81|IF2_LATSS Translation initiation factor IF-2 OS=Latilactobacillus
sakei subsp. sakei (strain 23K) OX=314315 GN=infB
PE=3 SV=1
Length=937
Score = 35.5 bits (80), Expect = 1.2, Method: Composition-based stats.
Identities = 21/117 (18%), Positives = 41/117 (35%), Gaps = 3/117 (3%)
Query 150 RNP--NNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR-GNSRNSTPGSSRGN 206
R P + A + A + + + +++ +R NSR +T N
Sbjct 87 RRPEADKKPAQHSNNRPQANANRNGQASNGQNRTNNARPNNNSARPNNSRPNTNSRPNNN 146
Query 207 SPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKR 263
S R S +L + + + QQ++ + +K E + +PR R
Sbjct 147 SQNRSTSANHPMSLQEQISQANARRQRTQERIQQQREQREADEKKRREQANRPRPTR 203
>sp|P17029|ZKSC1_HUMAN Zinc finger protein with KRAB and SCAN
domains 1 OS=Homo sapiens OX=9606 GN=ZKSCAN1 PE=1 SV=3
Length=563
Score = 34.8 bits (78), Expect = 1.8, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query 184 SSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQ 243
+ S + N ++ P + ++ ET+ K G+ + Q+
Sbjct 249 RNLSRDNRQENYGSAFPQGGENRNENEESTSKAETSEDSASRGETTGRSQKEFGEKRDQE 308
Query 244 GQTVTKKSAAEASKKPRQKRTATK--QYNVTQAFGRRGPEQT----------QGNFGDQD 291
G+T ++ K ++KR + + G RGP + NF +
Sbjct 309 GKTGERQQKNPEEKTRKEKRDSGPAIGKDKKTITGERGPREKGKGLGRSFSLSSNFTTPE 368
Query 292 LIRQGTDYKH 301
+ GT
Sbjct 369 EVPTGTKSHR 378
>sp|Q6P1L5|F117B_HUMAN Protein FAM117B OS=Homo sapiens OX=9606
GN=FAM117B PE=1 SV=2
Length=589
Score = 34.0 bits (76), Expect = 3.2, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 5/130 (4%)
Query 154 NNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMAS 213
+P G P + S +++ + S NS+ S + S
Sbjct 364 EEQLIPQDIPDGHRAPPPL-VQRSSSTRSIDTQTPGGADRGSNNSSRSQSVSPTSFLTIS 422
Query 214 GGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQ 273
G + L K ++ + + KR + +
Sbjct 423 NEGSEES----PCSADDLLVDPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVK 478
Query 274 AFGRRGPEQT 283
F P+Q
Sbjct 479 VFEECSPKQL 488
>sp|Q2UB17|ESF2_ASPOR Pre-rRNA-processing protein esf2 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=esf2
PE=3 SV=1
Length=335
Score = 33.6 bits (75), Expect = 3.3, Method: Composition-based stats.
Identities = 18/113 (16%), Positives = 37/113 (33%), Gaps = 12/113 (11%)
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
E + G + + S++R + R T + + S + L L + +
Sbjct 18 EDNDRGYDSEAAEESKARISKRRRTQTQDDESDQSDNDSVASDEDLKLSKSKGKAKKPQQ 77
Query 235 VSGKG---------QQQQGQT---VTKKSAAEASKKPRQKRTATKQYNVTQAF 275
S + Q+ G VT++ + +KP K K+ +
Sbjct 78 RSEEDVISDNDDEQQETSGTQYLDVTEQETKSSKRKPLDKGKPPKKNKTGVVY 130
>sp|O35892|SP100_MOUSE Nuclear autoantigen Sp-100 OS=Mus musculus
OX=10090 GN=Sp100 PE=1 SV=2
Length=482
Score = 33.6 bits (75), Expect = 4.3, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 26/166 (16%)
Query 134 VATEGALNTPKDHIGTRNPNN--NAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRS 191
V E + + + TR N + +++L G + ++E + + + SR
Sbjct 242 VKKENSSFSLAGNQQTRARTNQNEDSEIIELSSGDSDNGENFSEATTTVPSQPAPAYSRK 301
Query 192 RGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKS 251
R RG + S + +L S +
Sbjct 302 PPTLR-----RDRGGDTSDTESSIIIRRRKRTGRKKRERLGSYLIRNI------------ 344
Query 252 AAEASKKPRQK-----RTATKQYNVTQAFGRRGPEQTQGNFGDQDL 292
+ KP K R+A + G R P + +FG +L
Sbjct 345 --KIPMKPSWKTAFLARSANPSSQRRRKRGPRIPREENADFGGAEL 388
>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog
OS=Drosophila melanogaster OX=7227 GN=ncm PE=1 SV=3
Length=1330
Score = 33.6 bits (75), Expect = 4.6, Method: Composition-based stats.
Identities = 22/147 (15%), Positives = 48/147 (33%), Gaps = 9/147 (6%)
Query 150 RNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSR-----GNSRNSTPGS-S 203
R ++ G+ F G+ + +S R+R RN S
Sbjct 1105 RGRTQDSDEFNLEGPGSK--NRFQPNGNGQRRRDNSTGRERNRENSSYDRERNRGNSSYD 1162
Query 204 RGNSPARMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKR 263
R + + +R N+ + ++ + ++ + + E S PR+KR
Sbjct 1163 RERKRGNSSYDRERNRESSYDKERKNRNAVAHDRQRKRDRSRSYERPTIRENSA-PREKR 1221
Query 264 TATKQYNVTQAFGRRGPEQTQGNFGDQ 290
+ + G R + + G++
Sbjct 1222 MESSRSEKDSRRGDRSSRNERSDRGER 1248
Score = 32.8 bits (73), Expect = 8.7, Method: Composition-based stats.
Identities = 14/119 (12%), Positives = 33/119 (28%), Gaps = 4/119 (3%)
Query 150 RNPNNNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPA 209
R + + + + + P+ E SR + R SR + S RG
Sbjct 1198 RKRDRSRSYERPTIRENSAPREKRMESSRSEKDSR-RGDRSSRNERSDRGERSDRGERSD 1256
Query 210 RMASGGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQ 268
R + + + ++ + + + + + +KR
Sbjct 1257 RGERSDRGERSDR---GERSDRGERSDREKERSRAKERERDRDRDLKGQRERKRERDDG 1312
>sp|Q3U3E2|F117B_MOUSE Protein FAM117B OS=Mus musculus OX=10090
GN=Fam117b PE=1 SV=1
Length=584
Score = 32.8 bits (73), Expect = 6.1, Method: Composition-based stats.
Identities = 18/130 (14%), Positives = 35/130 (27%), Gaps = 5/130 (4%)
Query 154 NNAATVLQLPQGTTLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMAS 213
+P G P A+ S +++ + S NS+ S + S
Sbjct 359 EEQLIPQDIPDGHRAPPPL-AQRSSSTRSIDTQTPGGADKGSNNSSRSQSVSPTSFLTIS 417
Query 214 GGGETALALLLLDRLNQLESKVSGKGQQQQGQTVTKKSAAEASKKPRQKRTATKQYNVTQ 273
G + L + K ++ + + KR + +
Sbjct 418 NEGSEES----PCSADDLLADPRDKENGNNSPLPKYATSPKPNNSYMFKREPPEGCERVK 473
Query 274 AFGRRGPEQT 283
F P+Q
Sbjct 474 VFEECSPKQL 483
>sp|Q54Y98|TRA2_DICDI Transformer-2 protein homolog OS=Dictyostelium
discoideum OX=44689 GN=tra2 PE=3 SV=1
Length=326
Score = 32.5 bits (72), Expect = 8.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (46%), Gaps = 0/48 (0%)
Query 167 TLPKGFYAEGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASG 214
+ P+G E S + +R S +RG S N +RG SP+R
Sbjct 44 SPPRGNSRERSPPRGGSPNRGGSPNRGGSPNRGGSPNRGGSPSRDDKR 91
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus
OX=10090 GN=Ap3b1 PE=1 SV=2
Length=1105
Score = 32.5 bits (72), Expect = 9.4, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 31/92 (34%), Gaps = 3/92 (3%)
Query 175 EGSRGGSQASSRSSSRSRGNSRNSTPGSSRGNSPARMASGGGETALALLLLDRLNQLESK 234
+ S GSQA + ++ NS+ S S E++ + ES+
Sbjct 735 QDSETGSQAEAERQKVAKRNSKTKRKSDSENREKKNENSKASESSSEESSSMEDSSSESE 794
Query 235 VSGKGQQQQGQTVTKKSAAEASKKPRQKRTAT 266
+ + A +KP+Q+R
Sbjct 795 SESGSDSEPA---PRNVAPAKERKPQQERHPP 823
>sp|F1QZE9|TMC2B_DANRE Transmembrane channel-like protein 2-B
OS=Danio rerio OX=7955 GN=tmc2b PE=2 SV=2
Length=892
Score = 32.5 bits (72), Expect = 9.9, Method: Composition-based stats.
Identities = 21/92 (23%), Positives = 31/92 (34%), Gaps = 10/92 (11%)
Query 200 PGSSRGNSPARMASGGGETALALLLLDR----LNQLESKVSGKGQQQQGQTVTKKSAAEA 255
+ + ++ L LL ++ +E Q + VT K A A
Sbjct 775 RDEEKNRRNNKDSTNQVMKDLEDLLPNKSLIPPPSVEETEKPAEQPSKSSKVTGKPGAAA 834
Query 256 SKK--PRQK----RTATKQYNVTQAFGRRGPE 281
S K QK A + VT+A G R P
Sbjct 835 SGKGVHVQKDVSLAAANPRAPVTRAPGPRQPG 866
Lambda K H a alpha
0.317 0.124 0.327 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0381 0.140 1.90 42.6 43.6
Effective search space used: 41403535474
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40