Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2507403 | 500 | 17 | YP_009725300.1() | |
QUERYSEQ |
KIVNNWLKQLIKVTLVFLFVAAIFYLITPVHVMSKHTDFSSEIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQRGGSYTNDKACPLIAAVITREVGFVVPGLPGTILRTTNGDFLHFLPRVFSAVGNICYTPSKLIEYTDFATSAC VLAAECTIFKDASGKPVPYCYDTNVLEGSVAYESLRPDTRYVLMDGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVLNNDYYRSLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYY FMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWITIAYIICISTKHFYWFFSNYLKRRVVFNGVSFSTFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNK YKYFSGAMDTTSYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAVLQ |
500 | region | name | description |
1-500 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
500 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
8yb7 | C | 100.0 | R1AB_SARS2 Non-structural protein 4 | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
500 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
8yax[6] | A | R1AB_SARS2 Papain-like protease nsp3[1314 aa] | C | 100.0 /100.0 |
24 /24 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[6] | A | R1AB_SARS2 Papain-like protease nsp3[1314 aa] | C | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[6] | A | R1AB_SARS2 Papain-like protease nsp3[1314 aa] | C | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[6] | B | R1AB_SARS2 Papain-like protease nsp3[543 aa] | C | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[6] | B | R1AB_SARS2 Papain-like protease nsp3[543 aa] | D | 100.0 /100.0 |
23 /23 |
R1AB_SARS2 Non-structural protein 4 | |
8yb5[24] | A | R1AB_SARS2 Papain-like protease nsp3[353 aa] | C | 100.0 /100.0 |
23 /23 |
R1AB_SARS2 Non-structural protein 4 | |
8yb5[15] | A | R1AB_SARS2 Papain-like protease nsp3[353 aa] | C | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 4 | |
8yb5[12] | A | R1AB_SARS2 Papain-like protease nsp3[353 aa] | C | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 4 | |
8yb7[3] | A | R1AB_SARS2 Papain-like protease nsp3[353 aa] | H | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 4 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
500 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
8yax[36] | C | R1AB_SARS2 Non-structural protein 4[371 aa] | C | 100.0 /100.0 |
12 /12 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | C | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | C | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | C | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[36] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | C | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | C | R1AB_SARS2 Non-structural protein 4[371 aa] | D | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | C | R1AB_SARS2 Non-structural protein 4[371 aa] | D | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | C | R1AB_SARS2 Non-structural protein 4[371 aa] | D | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | D | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 4 | |
8yax[18] | D | R1AB_SARS2 Non-structural protein 4[371 aa] | D | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 4 | |
3vc8[2] | B | Q9J3E9_9BETC RNA-directed RNA polymerase[85 aa] | A | 75.0 /64.1 |
4 /4 |
Q9J3E9_9BETC RNA-directed RNA polymerase | |
3vcb[2] | B | Q9J3E9_9BETC RNA-directed RNA polymerase[89 aa] | A | 60.9 /61.4 |
23 /23 |
Q9J3E9_9BETC RNA-directed RNA polymerase | |
3gzf[4] | C | R1AB_FIPV Replicase polyprotein 1ab[92 aa] | A | 37.5 /40.4 |
16 /16 |
R1AB_FIPV Replicase polyprotein 1ab | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
500 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
3gzf[2] | F |
SO4
SULFATE ION[5 atoms] |
C | 50.0 /41.1 |
4 /4 |
R1AB_FIPV Replicase polyprotein 1ab | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |