[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240403.fasta
829,018 sequences; 237,935,689 total letters
Query= YP_009725300.1 nsp4 [Severe acute respiratory syndrome coronavirus
2]
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
3vcb_B B RNA-directed RNA polymerase 109 1e-27
3vcb_A A RNA-directed RNA polymerase 109 1e-27
3vc8_B B RNA-directed RNA polymerase 105 3e-26
3vc8_A A RNA-directed RNA polymerase 101 1e-24
3gzf_A A Replicase polyprotein 1ab 65.9 4e-12
3gzf_C C Replicase polyprotein 1ab 64.3 1e-11
3gzf_D D Replicase polyprotein 1ab 64.3 1e-11
3gzf_B B Replicase polyprotein 1ab 61.2 2e-10
3gzf_E E Replicase polyprotein 1ab 50.8 7e-07
1t70_B B Phosphatase 40.4 0.028
1t70_H H Phosphatase 40.4 0.028
1t70_F F Phosphatase 40.4 0.028
1t70_A A Phosphatase 40.4 0.028
1t70_C C Phosphatase 40.4 0.028
1t70_E E Phosphatase 40.4 0.028
1t70_D D Phosphatase 40.4 0.028
1t70_G G Phosphatase 40.4 0.028
>3vcb_B B RNA-directed RNA polymerase
Length=94
Score = 109 bits (273), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (76%), Gaps = 3/91 (3%)
Query 410 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 469
STFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC
Sbjct 5 STFEEMALTTFMITKESYSKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACS 62
Query 470 HLAKALNDFS-NSGSDVLYQPPQTSITSAVL 499
LAKA+ F+ N+G+DVLYQPP S+T++ L
Sbjct 63 QLAKAMETFNHNNGNDVLYQPPTASVTTSFL 93
>3vcb_A A RNA-directed RNA polymerase
Length=94
Score = 109 bits (273), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 69/91 (76%), Gaps = 3/91 (3%)
Query 410 STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACC 469
STFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC
Sbjct 5 STFEEMALTTFMITKESYSKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACS 62
Query 470 HLAKALNDFS-NSGSDVLYQPPQTSITSAVL 499
LAKA+ F+ N+G+DVLYQPP S+T++ L
Sbjct 63 QLAKAMETFNHNNGNDVLYQPPTASVTTSFL 93
>3vc8_B B RNA-directed RNA polymerase
Length=94
Score = 105 bits (263), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/87 (60%), Positives = 66/87 (76%), Gaps = 3/87 (3%)
Query 411 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 470
TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC
Sbjct 6 TFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQ 63
Query 471 LAKALNDFS-NSGSDVLYQPPQTSITS 496
LAKA+ F+ N+G+DVLYQPP S+T+
Sbjct 64 LAKAMETFNHNNGNDVLYQPPTASVTT 90
>3vc8_A A RNA-directed RNA polymerase
Length=94
Score = 101 bits (251), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/81 (62%), Positives = 62/81 (77%), Gaps = 3/81 (4%)
Query 411 TFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTTSYREAACCH 470
TFEE AL TF++ KE Y KL++ V +NRYL+LYNKY+YFSG MDT +YREAAC
Sbjct 6 TFEEMALTTFMITKESYCKLKNSV--SDVAFNRYLSLYNKYRYFSGKMDTAAYREAACSQ 63
Query 471 LAKALNDFS-NSGSDVLYQPP 490
LAKA+ F+ N+G+DVLYQPP
Sbjct 64 LAKAMETFNHNNGNDVLYQPP 84
>3gzf_A A Replicase polyprotein 1ab
Length=96
Score = 65.9 bits (159), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (56%), Gaps = 3/97 (3%)
Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461
+F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M
Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59
Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAV 498
YR A HL KAL D+S S +D LY PP S+ S +
Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSVNSTL 96
>3gzf_C C Replicase polyprotein 1ab
Length=96
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (40%), Positives = 52/93 (56%), Gaps = 3/93 (3%)
Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461
+F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M
Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59
Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSI 494
YR A HL KAL D+S S +D LY PP S+
Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSV 92
>3gzf_D D Replicase polyprotein 1ab
Length=96
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/93 (40%), Positives = 52/93 (56%), Gaps = 3/93 (3%)
Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461
+F G F +FE AA+ TF+++ Y L + L + Y +NKYKY++G+M
Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKYYTGSMGEA 59
Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSI 494
YR A HL KAL D+S S +D LY PP S+
Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSV 92
>3gzf_B B Replicase polyprotein 1ab
Length=96
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (53%), Gaps = 3/97 (3%)
Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461
+F G F +FE AA+ TF+++ Y L + L + Y +NKYK G+M
Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKXXXGSMGEA 59
Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPPQTSITSAV 498
YR A HL KAL D+S S +D LY PP S+ S +
Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPPTVSVNSTL 96
>3gzf_E E Replicase polyprotein 1ab
Length=96
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query 403 VFNGVSF-STFEEAALCTFLLNKEMYLKLRSDVLLPLTQYNRYLALYNKYKYFSGAMDTT 461
+F G F +FE AA+ TF+++ Y L + L + Y +NKYK
Sbjct 2 LFEGDKFVGSFESAAMGTFVIDMRSYETLVNST--SLDRIKSYANSFNKYKXXXXXXGEA 59
Query 462 SYREAACCHLAKALNDFSNSGSDVLYQPP 490
YR A HL KAL D+S S +D LY PP
Sbjct 60 DYRMACYAHLGKALMDYSVSRNDKLYTPP 88
>1t70_B B Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_H H Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_F F Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_A A Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_C C Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_E E Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_D D Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
>1t70_G G Phosphatase
Length=255
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 54/177 (31%), Positives = 73/177 (41%), Gaps = 31/177 (18%)
Query 95 ITREVGFVVPGLPGTILRT--TNGDFL---HFLPRVF-SAVGNICYTPSKLIEYTDFATS 148
I R + + PG PG RT NG+ L + L RVF AV N T L+E D T
Sbjct 84 IVRPLNYADPGTPGVGWRTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTV 143
Query 149 ACVLAAECTIFKDASG--------------KPVPYCYDTNVLEGSVAYESLRPDTRYVLM 194
AE T K+A G VP DT +L+G AY++ D +
Sbjct 144 FVDFHAEATSEKEAMGWHLAGRVAAVIGTHTHVPTA-DTRILKGGTAYQT---DAGFTGP 199
Query 195 DGSIIQFPNTYLEGSVRVVTTFDSEYCRHGTCE-RSE-AGVCVSTSGRWVLNNDYYR 249
SII + +EG ++ T R+G E R+E GV + G + YR
Sbjct 200 HDSII---GSAIEGPLQRFLT--ERPHRYGVAEGRAELNGVALHFEGGKATAAERYR 251
Lambda K H a alpha
0.327 0.140 0.437 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 51708696354
Database: unitmol_20240403.fasta
Posted date: Apr 4, 2024 8:53 PM
Number of letters in database: 237,935,689
Number of sequences in database: 829,018
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40