[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240501.fasta
835,512 sequences; 240,313,072 total letters
Query= sp|P59637|VEMP_SARS Envelope small membrane protein OS=Severe acute
respiratory syndrome coronavirus OX=694009 GN=E PE=1 SV=1
Length=76
Score E
Sequences producing significant alignments: (Bits) Value
2mm4_A A Envelope small membrane protein 103 4e-30
5x29_C C Envelope small membrane protein 103 7e-30
5x29_B B Envelope small membrane protein 103 7e-30
5x29_A A Envelope small membrane protein 103 7e-30
5x29_D D Envelope small membrane protein 103 7e-30
5x29_E E Envelope small membrane protein 103 7e-30
8suz_D D Envelope small membrane protein 56.2 1e-11
8suz_C C Envelope small membrane protein 56.2 1e-11
8suz_B B Envelope small membrane protein 56.2 1e-11
7k3g_D D Envelope small membrane protein 56.2 1e-11
7k3g_C C Envelope small membrane protein 56.2 1e-11
7k3g_E E Envelope small membrane protein 56.2 1e-11
7k3g_B B Envelope small membrane protein 56.2 1e-11
7k3g_A A Envelope small membrane protein 56.2 1e-11
8suz_E E Envelope small membrane protein 56.2 1e-11
8suz_A A Envelope small membrane protein 56.2 1e-11
8u1t_A A Envelope small membrane protein 43.9 1e-06
8u1t_B B Envelope small membrane protein 43.9 1e-06
>2mm4_A A Envelope small membrane protein
Length=58
Score = 103 bits (258), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 58
>5x29_C C Envelope small membrane protein
Length=81
Score = 103 bits (258), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_B B Envelope small membrane protein
Length=81
Score = 103 bits (258), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_A A Envelope small membrane protein
Length=81
Score = 103 bits (258), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_D D Envelope small membrane protein
Length=81
Score = 103 bits (258), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>5x29_E E Envelope small membrane protein
Length=81
Score = 103 bits (258), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 55/58 (95%), Positives = 55/58 (95%), Gaps = 0/58 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYSRVKNL 65
ETGTLIVNSVLLFLAFVVFLLVTLAILTALRL AY NIVNVSLVKPTVYVYSRVKNL
Sbjct 24 ETGTLIVNSVLLFLAFVVFLLVTLAILTALRLAAYAANIVNVSLVKPTVYVYSRVKNL 81
>8suz_D D Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_C C Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_B B Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_D D Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_C C Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_E E Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_B B Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>7k3g_A A Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_E E Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8suz_A A Envelope small membrane protein
Length=31
Score = 56.2 bits (134), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/31 (100%), Positives = 31/31 (100%), Gaps = 0/31 (0%)
Query 8 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 38
ETGTLIVNSVLLFLAFVVFLLVTLAILTALR
Sbjct 1 ETGTLIVNSVLLFLAFVVFLLVTLAILTALR 31
>8u1t_A A Envelope small membrane protein
Length=29
Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
Query 12 LIVNSVLLFLAFVVFLLVTLAILTAL 37
LIVNSVLLFLAFVVFLLVTLAILTAL
Sbjct 4 LIVNSVLLFLAFVVFLLVTLAILTAL 29
>8u1t_B B Envelope small membrane protein
Length=29
Score = 43.9 bits (102), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%), Gaps = 0/26 (0%)
Query 12 LIVNSVLLFLAFVVFLLVTLAILTAL 37
LIVNSVLLFLAFVVFLLVTLAILTAL
Sbjct 4 LIVNSVLLFLAFVVFLLVTLAILTAL 29
Lambda K H a alpha
0.329 0.141 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6056385600
Database: unitmol_20240501.fasta
Posted date: May 2, 2024 10:24 AM
Number of letters in database: 240,313,072
Number of sequences in database: 835,512
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40