[Multiple Alignment(many alignments)]
[Alignment Bar(many alignments)]
[show plain BLAST file]
BLASTP 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: unitmol_20240501.fasta
835,512 sequences; 240,313,072 total letters
Query= sp|P0DTC5|VME1_SARS2 Membrane protein OS=Severe acute respiratory
syndrome coronavirus 2 OX=2697049 GN=M PE=1 SV=1
Length=222
Score E
Sequences producing significant alignments: (Bits) Value
7vgr_E A Membrane protein 403 2e-143
7vgr_F B Membrane protein 403 2e-143
7vgs_D B Membrane protein 399 6e-142
7vgs_A A Membrane protein 399 6e-142
8ctk_A A Membrane protein 384 4e-136
8ctk_B B Membrane protein 384 4e-136
7y9b_A A Membrane protein 167 5e-51
7y9b_D D Membrane protein 167 5e-51
7y9b_C C Membrane protein 167 5e-51
7y9b_B B Membrane protein 167 5e-51
7y96_B B Green fluorescent protein,Membrane protein 79.0 5e-16
7y96_A A Green fluorescent protein,Membrane protein 75.1 1e-14
8cme_F F Membrane protein 34.7 0.035
8cme_I I Membrane protein 34.7 0.035
8cme_C C Membrane protein 34.7 0.035
>7vgr_E A Membrane protein
Length=246
Score = 403 bits (1035), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA
Sbjct 33 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 92
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI
Sbjct 93 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 152
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 188
LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA
Sbjct 153 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 212
Query 189 GDSGFAAYSRYRIGNYKL 206
GDSGFAAYSRYRIGNYKL
Sbjct 213 GDSGFAAYSRYRIGNYKL 230
>7vgr_F B Membrane protein
Length=246
Score = 403 bits (1035), Expect = 2e-143, Method: Compositional matrix adjust.
Identities = 198/198 (100%), Positives = 198/198 (100%), Gaps = 0/198 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA
Sbjct 33 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 92
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI
Sbjct 93 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 152
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 188
LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA
Sbjct 153 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 212
Query 189 GDSGFAAYSRYRIGNYKL 206
GDSGFAAYSRYRIGNYKL
Sbjct 213 GDSGFAAYSRYRIGNYKL 230
>7vgs_D B Membrane protein
Length=246
Score = 399 bits (1025), Expect = 6e-142, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA
Sbjct 33 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 92
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI
Sbjct 93 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 152
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 188
LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA
Sbjct 153 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 212
Query 189 GDSGFAAYSRYRIGNY 204
GDSGFAAYSRYRIGNY
Sbjct 213 GDSGFAAYSRYRIGNY 228
>7vgs_A A Membrane protein
Length=246
Score = 399 bits (1025), Expect = 6e-142, Method: Compositional matrix adjust.
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 9 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 68
TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA
Sbjct 33 TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLA 92
Query 69 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 128
AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI
Sbjct 93 AVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTI 152
Query 129 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 188
LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA
Sbjct 153 LTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVA 212
Query 189 GDSGFAAYSRYRIGNY 204
GDSGFAAYSRYRIGNY
Sbjct 213 GDSGFAAYSRYRIGNY 228
>8ctk_A A Membrane protein
Length=231
Score = 384 bits (986), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 188/188 (100%), Positives = 188/188 (100%), Gaps = 0/188 (0%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI 76
LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI
Sbjct 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI 76
Query 77 TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES 136
TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES
Sbjct 77 TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES 136
Query 137 ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY 196
ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY
Sbjct 137 ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY 196
Query 197 SRYRIGNY 204
SRYRIGNY
Sbjct 197 SRYRIGNY 204
>8ctk_B B Membrane protein
Length=231
Score = 384 bits (986), Expect = 4e-136, Method: Compositional matrix adjust.
Identities = 188/188 (100%), Positives = 188/188 (100%), Gaps = 0/188 (0%)
Query 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI 76
LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI
Sbjct 17 LEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWI 76
Query 77 TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES 136
TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES
Sbjct 77 TGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTRPLLES 136
Query 137 ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY 196
ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY
Sbjct 137 ELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAY 196
Query 197 SRYRIGNY 204
SRYRIGNY
Sbjct 197 SRYRIGNY 204
>7y9b_A A Membrane protein
Length=220
Score = 167 bits (424), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 84/188 (45%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Query 15 KLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRIN 74
+L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP ++A + AVY I+
Sbjct 15 RLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAVYPID 74
Query 75 ---WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTR 131
I GI A +C MW+SYF+ S RLF RT S WSFNPE+N LLNVP+ GT + R
Sbjct 75 LASQIISGILAATSCA---MWISYFVQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVVR 131
Query 132 PLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDS 191
PL+E + AV+ G+L++AG H G CD + LP E+TVA L K+ Q +S
Sbjct 132 PLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMIKRQAYGTNS 191
Query 192 GFAAYSRY 199
G A Y RY
Sbjct 192 GVAIYHRY 199
>7y9b_D D Membrane protein
Length=220
Score = 167 bits (424), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 84/188 (45%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Query 15 KLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRIN 74
+L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP ++A + AVY I+
Sbjct 15 RLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAVYPID 74
Query 75 ---WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTR 131
I GI A +C MW+SYF+ S RLF RT S WSFNPE+N LLNVP+ GT + R
Sbjct 75 LASQIISGILAATSCA---MWISYFVQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVVR 131
Query 132 PLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDS 191
PL+E + AV+ G+L++AG H G CD + LP E+TVA L K+ Q +S
Sbjct 132 PLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMIKRQAYGTNS 191
Query 192 GFAAYSRY 199
G A Y RY
Sbjct 192 GVAIYHRY 199
>7y9b_C C Membrane protein
Length=220
Score = 167 bits (424), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 84/188 (45%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Query 15 KLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRIN 74
+L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP ++A + AVY I+
Sbjct 15 RLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAVYPID 74
Query 75 ---WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTR 131
I GI A +C MW+SYF+ S RLF RT S WSFNPE+N LLNVP+ GT + R
Sbjct 75 LASQIISGILAATSCA---MWISYFVQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVVR 131
Query 132 PLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDS 191
PL+E + AV+ G+L++AG H G CD + LP E+TVA L K+ Q +S
Sbjct 132 PLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMIKRQAYGTNS 191
Query 192 GFAAYSRY 199
G A Y RY
Sbjct 192 GVAIYHRY 199
>7y9b_B B Membrane protein
Length=220
Score = 167 bits (424), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 84/188 (45%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Query 15 KLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRIN 74
+L++ WN +FL +LQ+ Y +R+ F+Y+IK+ LWLLWP ++A + AVY I+
Sbjct 15 RLVKDWNFTWSVVFLLITIVLQYGYPSRSMFVYVIKMFVLWLLWPASMALSIFCAVYPID 74
Query 75 ---WITGGIAIAMACLVGLMWLSYFIASFRLFARTRSMWSFNPETNILLNVPLHGTILTR 131
I GI A +C MW+SYF+ S RLF RT S WSFNPE+N LLNVP+ GT + R
Sbjct 75 LASQIISGILAATSCA---MWISYFVQSIRLFMRTGSWWSFNPESNCLLNVPIGGTTVVR 131
Query 132 PLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDS 191
PL+E + AV+ G+L++AG H G CD + LP E+TVA L K+ Q +S
Sbjct 132 PLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPNVLIALKMIKRQAYGTNS 191
Query 192 GFAAYSRY 199
G A Y RY
Sbjct 192 GVAIYHRY 199
>7y96_B B Green fluorescent protein,Membrane protein
Length=344
Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 0/86 (0%)
Query 115 ETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSR 174
E+N LLNVP+ GT + RPL+E + AV+ G+L++AG H G CD + LP E+TVA
Sbjct 147 ESNCLLNVPIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPN 206
Query 175 TLSYYKLGASQRVAGDSGFAAYSRYR 200
L K+ Q +SG A Y RY+
Sbjct 207 VLIALKMIKRQAYGTNSGVAIYHRYK 232
>7y96_A A Green fluorescent protein,Membrane protein
Length=344
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (60%), Gaps = 0/84 (0%)
Query 115 ETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSR 174
E+N LLNVP+ GT + RPL+E + AV+ G+L++AG H G CD + LP E+TVA
Sbjct 147 ESNCLLNVPIGGTTVVRPLVEDSTSVTAVVTDGYLKMAGMHFGACDFQRLPSEVTVAKPN 206
Query 175 TLSYYKLGASQRVAGDSGFAAYSR 198
L K+ Q +SG A Y R
Sbjct 207 VLIALKMIKRQAYGTNSGVAIYHR 230
>8cme_F F Membrane protein
Length=15
Score = 34.7 bits (78), Expect = 0.035, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
Query 176 LSYYKLGASQRVAGD 190
LSYYKLGASQRVAGD
Sbjct 1 LSYYKLGASQRVAGD 15
>8cme_I I Membrane protein
Length=15
Score = 34.7 bits (78), Expect = 0.035, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
Query 176 LSYYKLGASQRVAGD 190
LSYYKLGASQRVAGD
Sbjct 1 LSYYKLGASQRVAGD 15
>8cme_C C Membrane protein
Length=15
Score = 34.7 bits (78), Expect = 0.035, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%), Gaps = 0/15 (0%)
Query 176 LSYYKLGASQRVAGD 190
LSYYKLGASQRVAGD
Sbjct 1 LSYYKLGASQRVAGD 15
Lambda K H a alpha
0.328 0.141 0.444 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 15666988032
Database: unitmol_20240501.fasta
Posted date: May 2, 2024 10:24 AM
Number of letters in database: 240,313,072
Number of sequences in database: 835,512
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40