Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
8514 | 75 | 24 | P0DTC4(VEMP_SARS2) | RecName: Full=Envelope small membrane protein ; Short=E; Short=sM protein ; |
QUERYSEQ |
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPDLLV |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
1 | M | - | - | - | - | M |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
2 | Y | - | - | - | - | LY |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
3 | S | - | - | - | - | PS |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
4 | F | - | - | - | - | F |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
5 | V | - | - | - | - | V |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
6 | S | - | - | - | - | QSH |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
7 | E | - | - | - | - | E |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
8 | E | e | 97.5 | 8suz_D | QEDR |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |||
9 | T | H | e | 81.2 | 8suz_D | TI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
10 | G | H | e | 26.2 | 8suz_D | GA |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
11 | T | H | e | 77.3 | 8suz_D | homo | TWAL |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
12 | L | H | e | 86.5 | 8suz_D | homo | FLYI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
13 | I | H | e | 76.0 | 8suz_D | homo | IV |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
14 | V | H | e | 69.3 | 8suz_D | homo | VG |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
15 | N | H | e | 54.5 | 8suz_D | homo | NQ |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
16 | S | H | e | 50.8 | 8suz_D | FSI |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
17 | V | H | e | 76.7 | 8suz_D | homo | FV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
18 | L | H | e | 60.1 | 8suz_D | homo | ILF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
19 | L | H | e | 73.0 | 8suz_D | homo | LF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
20 | F | H | e | 58.4 | 8suz_D | homo | TFVS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
21 | L | H | e | 47.8 | 8suz_D | homo | LV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
22 | A | H | e | 36.6 | 8suz_D | VAS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
23 | F | H | e | 49.3 | 8suz_D | CF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
24 | V | H | e | 54.7 | 8suz_D | homo | VA |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
25 | V | H | e | 49.3 | 8suz_D | homo | IV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
26 | F | H | e | 68.9 | 8suz_D | homo | FT |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
27 | L | H | e | 62.4 | 8suz_D | homo | L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
28 | L | H | e | 69.1 | 8suz_D | homo | LIV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
29 | V | H | e | 59.3 | 8suz_D | homo | VF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
30 | T | H | e | 45.5 | 8suz_D | CTV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
31 | L | H | e | 71.9 | 8suz_D | homo | LVM |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
32 | A | H | e | 44.6 | 8suz_D | A |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
33 | I | H | e | 76.6 | 8suz_D | homo | ILFV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
34 | L | H | e | 62.4 | 8suz_D | L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
35 | T | H | e | 74.0 | 8suz_D | homo | TA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
36 | A | T | e | 44.6 | 8suz_D | homo | AT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
37 | L | e | 100.0 | 8suz_D | homo | ILT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
38 | R | e | 119.4 | 8suz_D | homo | RK |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
39 | L | - | - | - | - | L |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
40 | C | - | - | - | - | C |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
41 | A | - | - | - | - | VAI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
42 | Y | - | - | - | - | QY |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
43 | C | - | - | - | - | CI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
44 | C | - | - | - | - | CMVA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
45 | N | - | - | - | - | SNGT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
46 | I | - | - | - | - | GIF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
47 | V | - | - | - | - | CVF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
48 | N | - | - | - | - | NH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
49 | V | - | - | - | - | TVI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
50 | S | - | - | - | - | LSF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
51 | L | - | - | - | - | LIV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
52 | V | - | - | - | - | VFI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
53 | K | - | - | - | - | KSLQV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
54 | P | - | - | - | - | P |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
55 | S | - | - | - | - | AST |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
56 | F | - | - | - | - | VFAL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
57 | Y | - | - | - | - | YH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
58 | V | - | - | - | - | VIL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
59 | Y | - | - | - | - | Y |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
60 | S | - | - | - | - | NS |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
61 | R | - | - | - | - | RT |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
62 | V | e | 131.3 | 7tuq_C | hetero BRD4_HUMAN | GV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
63 | K | e | 232.1 | 7tuq_C | hetero BRD4_HUMAN | RK |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
64 | N | e | 130.9 | 7tuq_C | hetero BRD4_HUMAN | NQS |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
65 | L | - | - | - | - | LF |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
66 | N | - | - | - | - | QNY |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
67 | S | e | 130.5 | 7m4r_C | SKDE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
68 | S | e | 83.6 | 7m4r_C | SN |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
69 | R | e | 62.1 | 7ntk_C | hetero MPP5_HUMAN | RKE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
70 | V | e | 102.7 | 7ntk_C | hetero MPP5_HUMAN | PV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
71 | P | e | 121.7 | 7qct_D | hetero MPP5_HUMAN AFAD_HUMAN LNX2_HUMAN | P |
MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
72 | D | e | 104.9 | 7qct_D | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | D |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
73 | L | e | 76.4 | 7qct_D | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
74 | L | e | 85.4 | 7qct_D | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
75 | V | e | 126.7 | 7qct_D | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN precipitant | V |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" |