Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
973223 | 75 | 30 | P0DTC4(VEMP_SARS2) | RecName: Full=Envelope small membrane protein ; Short=E; Short=sM protein ; |
QUERYSEQ |
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPDLLV |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
1 | M | - | - | - | - | M |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
2 | Y | - | - | - | - | LY |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
3 | S | - | - | - | - | PS |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
4 | F | - | - | - | - | F |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
5 | V | - | - | - | - | V |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
6 | S | - | - | - | - | QSH |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
7 | E | - | - | - | - | E |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
8 | E | e | 84.9 | 2mm4_A | homo | QEDR |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
9 | T | e | 108.4 | 2mm4_A | TI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |||
10 | G | S | e | 58.3 | 2mm4_A | GA |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
11 | T | e | 23.4 | 2mm4_A | homo | TWAL |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
12 | L | e | 99.4 | 2mm4_A | homo | FLYI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
13 | I | S | e | 88.9 | 2mm4_A | homo | IV |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
14 | V | H | e | 50.7 | 2mm4_A | homo | VG |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
15 | N | H | e | 67.3 | 2mm4_A | homo | NQ |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
16 | S | H | e | 44.5 | 2mm4_A | homo | FSI |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
17 | V | H | e | 54.7 | 2mm4_A | homo | FV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
18 | L | H | e | 86.0 | 2mm4_A | homo | ILF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
19 | L | H | e | 74.7 | 2mm4_A | homo | LF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
20 | F | H | e | 58.4 | 2mm4_A | homo | TFVS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
21 | L | H | e | 68.0 | 2mm4_A | homo | LV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
22 | A | H | e | 36.6 | 2mm4_A | homo | VAS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
23 | F | H | e | 36.8 | 2mm4_A | homo | CF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
24 | V | H | e | 36.7 | 2mm4_A | homo | VA |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
25 | V | H | e | 62.7 | 2mm4_A | homo | IV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
26 | F | H | e | 61.7 | 2mm4_A | homo | FT |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
27 | L | H | e | 53.9 | 2mm4_A | homo | L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
28 | L | H | e | 69.1 | 2mm4_A | homo | LIV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
29 | V | H | e | 83.3 | 2mm4_A | homo | VF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
30 | T | H | e | 43.5 | 2mm4_A | CTV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
31 | L | H | e | 66.9 | 2mm4_A | homo | LVM |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
32 | A | H | e | 57.1 | 2mm4_A | A |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
33 | I | H | e | 77.2 | 2mm4_A | homo | ILFV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
34 | L | H | e | 52.8 | 2mm4_A | L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
35 | T | H | e | 34.4 | 2mm4_A | homo | TA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
36 | A | H | e | 47.3 | 2mm4_A | homo | AT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
37 | L | H | e | 82.6 | 2mm4_A | homo | ILT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
38 | R | H | e | 58.9 | 2mm4_A | homo | RK |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
39 | L | H | e | 28.1 | 2mm4_A | L |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
40 | C | H | e | 41.1 | 2mm4_A | C |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
41 | A | H | e | 60.7 | 2mm4_A | VAI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
42 | Y | H | e | 37.4 | 2mm4_A | QY |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
43 | C | T | e | 36.6 | 2mm4_A | CI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
44 | C | T | e | 87.5 | 2mm4_A | CMVA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
45 | N | T | e | 84.8 | 2mm4_A | SNGT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
46 | I | S | e | 92.4 | 2mm4_A | GIF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
47 | V | e | 61.3 | 2mm4_A | homo | CVF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
48 | N | S | e | 70.3 | 2mm4_A | homo | NH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
49 | V | e | 58.0 | 2mm4_A | homo | TVI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
50 | S | b | 3.9 | 2mm4_A | LSF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
51 | L | e | 78.1 | 2mm4_A | LIV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
52 | V | S | e | 76.0 | 2mm4_A | VFI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
53 | K | S | e | 62.7 | 2mm4_A | KSLQV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
54 | P | T | e | 52.7 | 2mm4_A | P |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
55 | S | T | b | 17.5 | 2mm4_A | AST |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
56 | F | H | e | 66.7 | 2mm4_A | VFAL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
57 | Y | H | e | 53.0 | 2mm4_A | homo | YH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
58 | V | H | e | 52.0 | 2mm4_A | VIL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
59 | Y | H | e | 73.5 | 2mm4_A | Y |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
60 | S | H | e | 45.3 | 2mm4_A | homo | NS |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
61 | R | H | e | 74.7 | 2mm4_A | homo | RT |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
62 | V | H | e | 78.0 | 2mm4_A | hetero BRD4_HUMAN | GV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
63 | K | H | e | 73.1 | 2mm4_A | hetero BRD4_HUMAN homo | RK |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
64 | N | H | e | 78.2 | 2mm4_A | hetero BRD4_HUMAN homo | NQS |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
65 | L | e | 119.7 | 2mm4_A | homo | LF |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
66 | N | - | - | - | - | QNY |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
67 | S | e | 130.5 | 7m4r_C | SKDE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
68 | S | e | 83.6 | 7m4r_C | SN |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
69 | R | S | e | 78.7 | 7m4r_C | hetero MPP5_HUMAN | RKE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
70 | V | S | e | 88.0 | 7m4r_C | hetero MPP5_HUMAN | PV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
71 | P | e | 83.7 | 7m4r_C | hetero MPP5_HUMAN AFAD_HUMAN LNX2_HUMAN | P |
MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
72 | D | e | 96.3 | 7m4r_C | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | D |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
73 | L | e | 89.3 | 7m4r_C | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
74 | L | e | 84.3 | 7m4r_C | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
75 | V | e | 130.0 | 7m4r_C | hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN precipitant | V |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" |