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Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
3803390 794 23 P09958(FURIN_HUMAN) RecName: Full=Furin ; EC=3.4.21.75 ;AltName: Full=Dibasic-processing enzyme;AltName: Full=Paired basic amino acid residue-cleaving enzyme; Short=PACE;Flags: Precursor;
QUERYSEQ 
MELRPWLLWVVAATGTLVLLAADAQGQKVFTNTWAVRIPGGPAVANSVARKHGFLNLGQIFGDYYHFWHRGVTKRSLSPHRPRHSRLQREPQVQWLEQQVAKRRTKRDVYQEPTDPKFPQQWYLSGVTQRDLNVKAAWAQGYTGHGIVVS
ILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH
DSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNANDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKC
IIDILTEPKDIGKRLEVRKTVTACLGEPNHITRLEHAQARLTLSYNRRGDLAIHLVSPMGTRSTLLAARPHDYSADGFNDWAFMTTHSWDEDPSGEWVLEIENTSEANNYGTLTKFTLVLYGTAPEGLPVPPESSGCKTLTSSQACVVCE
EGFSLHQKSCVQHCPPGFAPQVLDTHYSTENDVETIRASVCAPCHASCATCQGPALTDCLSCPSHASLDPVEQTCSRQSQSSRESPPQQQPPRLPPEVEAGQRLRAGLLPSHLPEVVAGLSCAFIVLVFVTVFLVLQLRSGFSFRGVKVY
TMDRGLISYKGLPPEAWQEECPSDSEEDEGRGERTAFIKDQSAL
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

Statistics of sites in view of Disease classification

All LB/B (likely benign or benign)US (uncertain significance)
Number of sites 794 4 1
Buired or ExposedBuried 56.3 (%) [277] 0.0 (%) [0] 100.0 (%) [1]
Exposed 43.7 (%) [215] 100.0 (%) [2] 0.0 (%) [0]
Ave relacc 24.6 % 52.5 % 2.4 %
SD relacc 27.12 % 10.79 % 0.00 %
Contact Molhetero 3.7 (%) [29] 0.0 (%) [0] 0.0 (%) [0]
nucleotide 0.0 (%) [0] 0.0 (%) [0] 0.0 (%) [0]
compound 3.9 (%) [31] 0.0 (%) [0] 0.0 (%) [0]
metal 3.5 (%) [28] 0.0 (%) [0] 0.0 (%) [0]
otherpoly 0.0 (%) [0] 0.0 (%) [0] 0.0 (%) [0]
homo 0.0 (%) [0] 0.0 (%) [0] 0.0 (%) [0]
precipitant 5.3 (%) [42] 0.0 (%) [0] 0.0 (%) [0]
Number of variants 5 4 1
N_Freq(AAvariant)==0 % 0.0 % [0] 100.0 % [1]
N_Freq(AAvariant)>0 % 100.0 % [4] 0.0 % [0]
Ave Freq(AAvariant) 4.2 % 0.0 %
SD Freq(AAvariant) 1.92 % 0.00 %

Site Table for OMIM:LB/B [4 variants]

4 sites 43,146,298,636
  [n]:site number of query sequence.  [a]:amino acid of query sequence.  [s]:predicted secondary structure.
  [e]:predicted exposed/buried.  [acc]:predicted relative accesssibility(%).  [pdb]:PDB code of homologous structure.
  [contact_mols]:predicted binding molecules  [observed aa]:Observed amino acids among homologous sequences.  [feature table]:UniProt Feature Table
  [variant]:UniProt Human Variant.
n a s e acc pdb contact_mols observed aa feature table variant
43A---- 
AEQDGSVPR
 PROPEP /note="Inhibition peptide" /id="PRO_0000027028" PROPEP /note="Inhibition peptide" /id="PRO_0000027028" A->V:(5.0 %):LB/B - dbSNP:rs1694497
146GTe 41.7 4ryd_A 
GNRS
 DOMAIN /note="Peptidase S8" TOPO_DOM /note="Lumenal" DOMAIN /note="Peptidase S8" TOPO_DOM /note="Lumenal" G->S:(3.0 %):LB/B -
298RGe 63.2 4ryd_A 
RASHKLNQPVEMTDFGIY
 DOMAIN /note="Peptidase S8" TOPO_DOM /note="Lumenal" DOMAIN /note="Peptidase S8" TOPO_DOM /note="Lumenal" R->Q:(7.0 %):LB/B -
636I---- 
LSIQAEGKTVCDFHMNPRY
 TOPO_DOM /note="Lumenal" TOPO_DOM /note="Lumenal" I->V:(2.0 %):LB/B -

Site Table for OMIM:US [1 variants]

1 sites 547
  [n]:site number of query sequence.  [a]:amino acid of query sequence.  [s]:predicted secondary structure.
  [e]:predicted exposed/buried.  [acc]:predicted relative accesssibility(%).  [pdb]:PDB code of homologous structure.
  [contact_mols]:predicted binding molecules  [observed aa]:Observed amino acids among homologous sequences.  [feature table]:UniProt Feature Table
  [variant]:UniProt Human Variant.
n a s e acc pdb contact_mols observed aa feature table variant
547WEb 2.4 4ryd_A 
WY
 DOMAIN /note="P/Homo B" TOPO_DOM /note="Lumenal" DOMAIN /note="P/Homo B" TOPO_DOM /note="Lumenal" W->R:(0.0 %):US -