Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
1613591 | 75 | 24 | P0DTC4(VEMP_SARS2) | RecName: Full=Envelope small membrane protein ; Short=E; Short=sM protein ; |
QUERYSEQ |
MYSFVSEETGTLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPSFYVYSRVKNLNSSRVPDLLV |
[n]:site number of query sequence. [a]:amino acid of query sequence. [s]:predicted secondary structure. [e]:predicted exposed/buried. [acc]:predicted relative accesssibility(%). [pdb]:PDB code of homologous structure. [contact_mols]:predicted binding molecules [observed aa]:Observed amino acids among homologous sequences. [feature table]:UniProt Feature Table [variant]:UniProt Human Variant.
n | a | s | e | acc | pdb | contact_mols | observed aa | feature table | variant |
![]() | M | - | - | - | - | M |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | Y | - | - | - | - | LY |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | S | - | - | - | - | PS |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | F | - | - | - | - | F |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | V | - | - | - | - | V |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | S | - | - | - | - | QSH |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | E | - | - | - | - | E |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | E | e | 98.5 | ![]() |
QEDR |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |||
![]() | T | H | e | 77.3 | ![]() |
TI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | G | H | e | 26.2 | ![]() |
GA |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | ||
![]() | T | H | e | 79.2 | ![]() |
homo | TWAL |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 86.5 | ![]() |
homo | FLYI |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
![]() | I | H | e | 78.4 | ![]() |
homo | IV |
TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Virion surface" ECO:0000305|PubMed:32898469" | |
![]() | V | H | e | 68.7 | ![]() |
homo | VG |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | N | H | e | 57.0 | ![]() |
homo | NQ |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | S | H | e | 49.2 | ![]() |
FSI |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | V | H | e | 76.0 | ![]() |
homo | FV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 60.1 | ![]() |
homo | ILF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 73.0 | ![]() |
homo | LF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | F | H | e | 58.9 | ![]() |
homo | TFVS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 48.3 | ![]() |
homo | LV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | A | H | e | 49.1 | ![]() |
VAS |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | F | H | e | 48.8 | ![]() |
CF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | V | H | e | 52.7 | ![]() |
homo | VA |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | V | H | e | 55.3 | ![]() |
homo | IV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | F | H | e | 65.1 | ![]() |
homo | FT |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 57.3 | ![]() |
homo | L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 69.1 | ![]() |
homo | LIV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | V | H | e | 60.7 | ![]() |
homo | VF |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | T | H | e | 33.1 | ![]() |
CTV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | L | H | e | 72.5 | ![]() |
homo | LVM |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | A | H | e | 43.8 | ![]() |
A |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | I | H | e | 77.8 | ![]() |
homo | ILFV |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | |
![]() | L | H | e | 61.8 | ![]() |
L |
TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" TRANSMEM /note="Helical" ECO:0000269|PubMed:33177698, ECO:0000305|PubMed:32898469" | ||
![]() | T | H | e | 75.3 | ![]() |
homo | TA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
![]() | A | T | e | 48.2 | ![]() |
homo | AT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
![]() | L | e | 97.8 | ![]() |
homo | ILT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | R | e | 119.8 | ![]() |
homo | RK |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | L | - | - | - | - | L |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | C | - | - | - | - | C |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | A | - | - | - | - | VAI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | Y | - | - | - | - | QY |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | C | - | - | - | - | CI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | C | - | - | - | - | CMVA |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | N | - | - | - | - | SNGT |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | I | - | - | - | - | GIF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | - | - | - | - | CVF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | N | - | - | - | - | NH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | - | - | - | - | TVI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | S | - | - | - | - | LSF |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | L | - | - | - | - | LIV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | - | - | - | - | VFI |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | K | - | - | - | - | KSLQV |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | P | - | - | - | - | P |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | S | - | - | - | - | AST |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | F | - | - | - | - | VFAL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | Y | - | - | - | - | YH |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | - | - | - | - | VIL |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | Y | - | - | - | - | Y |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | S | - | - | - | - | NS |
TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | R | - | - | - | - | RT |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | e | 131.3 | ![]() |
hetero BRD4_HUMAN | GV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | K | e | 232.1 | ![]() |
hetero BRD4_HUMAN | RK |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | N | e | 130.9 | ![]() |
hetero BRD4_HUMAN | NQS |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | L | - | - | - | - | LF |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | N | - | - | - | - | QNY |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | S | e | 130.5 | ![]() |
SKDE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
![]() | S | e | 83.6 | ![]() |
SN |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |||
![]() | R | S | e | 78.7 | ![]() |
hetero MPP5_HUMAN | RKE |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
![]() | V | S | e | 88.0 | ![]() |
hetero MPP5_HUMAN | PV |
REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | |
![]() | P | e | 83.7 | ![]() |
hetero MPP5_HUMAN AFAD_HUMAN LNX2_HUMAN | P |
MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MUTAGEN /note="P->L: Complete loss of interaction with host PARD3 and MLLT4. Partial loss of interaction with host ZO1." REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | D | e | 96.3 | ![]() |
hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | D |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | L | e | 89.3 | ![]() |
hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | L | e | 84.3 | ![]() |
hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN | L |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" | ||
![]() | V | e | 130.0 | ![]() |
hetero MPP5_HUMAN AFAD_HUMAN PALS1_HUMAN LNX2_HUMAN precipitant | V |
MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" MOTIF /note="PDZ-binding; required for interaction with human MPP5" REGION /note="Disordered" TOPO_DOM /note="Intravirion" ECO:0000305|PubMed:32898469" |