Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
1223645 | 139 | 174 | YP_009725306.1() | |
QUERYSEQ |
AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSCDQLREPMLQ |
139 | region | name | description |
1-139 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
139 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
9fzk | A | 100.0 | R1A_SARS2 Non-structural protein 11 | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6w4h[67] | A | R1AB_SARS2 2'-O-methyltransferase[299 aa] | B | 100.0 /100.0 |
20 /20 |
R1AB_SARS2 Non-structural protein 10 | |
6yz1[4] | A | R1AB_SARS2 nsp16[297 aa] | B | 100.0 /100.0 |
18 /18 |
R1AB_SARS2 nsp10 | |
7diy[6] | B | R1AB_SARS2 nsp14-ExoN protein[286 aa] | A | 100.0 /100.0 |
43 /43 |
R1AB_SARS2 nsp10 protein | |
7egq[2] | F | R1AB_SARS2 Non-structural protein 9[113 aa] | G | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7egq[9] | H | R1AB_SARS2 Proofreading exoribonuclease[523 aa] | G | 100.0 /100.0 |
38 /38 |
R1AB_SARS2 Non-structural protein 10 | |
7n0d[2] | B | R1AB_SARS2 Proofreading exoribonuclease[512 aa] | C | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
7o7y[3] | AC | G1TTN1_RABIT eL39[50 aa] | ZA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o81[1] | BC | G1TTN1_RABIT eL39[50 aa] | AB | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o7y[4] | EB | G1TVT6_RABIT uL22[159 aa] | ZA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o7y[3] | RA | G1SVW5_RABIT 60S ribosomal protein L4[362 aa] | ZA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o81[1] | SA | G1SVW5_RABIT 60S ribosomal protein L4[362 aa] | AB | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Replicase polyprotein 1ab | |
5c8s[10] | B | R1AB_CVHSA Guanine-N7 methyltransferase[514 aa] | A | 100.0 /98.5 |
41 /42 |
R1AB_CVHSA Non-structural protein 10 | |
2xyq[4] | A | R1AB_CVHSA PUTATIVE 2'-O-METHYL TRANSFERASE [287 aa] | B | 100.0 /98.4 |
21 /21 |
R1AB_CVHSA NON-STRUCTURAL PROTEIN 10 | |
3r24[1] | A | R1AB_CVHSA 2'-O-methyl transferase [292 aa] | B | 100.0 /98.3 |
21 /21 |
R1A_CVHSA Non-structural protein 10 and Non-structural prote.. | |
5yn5[12] | A | K0BWD0_9BETC nsp16 protein[289 aa] | B | 85.0 /60.7 |
20 /20 |
K4LC41_9BETC nsp10 protein | |
7nh7[1] | A | R1AB_CVHOC Replicase polyprotein 1ab[295 aa] | B | 78.9 /54.6 |
19 /19 |
R1A_CVHOC Replicase polyprotein 1a | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
NUCLEOTIDE | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7n0b[1] | C | RNA (5'-R(*AP*UP*GP*UP*GP*AP*UP*UP*UP*UP*AP*AP*UP*.. | A | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7n0c[1] | C | RNA (25-MER) | A | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7n0d[4] | E | RNA (5'-R(*GP*GP*GP*GP*AP*UP*GP*UP*GP*AP*UP*UP*UP*.. | A | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7o7y[3] | MA | 28S rRNA | ZA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o81[1] | NA | 28S rRNA | AB | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7o81[1] | J | A-site Met-tRNA(Met) | AB | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Replicase polyprotein 1ab | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6w4h[3] | J |
BDF
beta-D-fructopyranose[12 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 10 | |
8f4y[1] | R |
XE0
4-[2-(2,4-dichlorophenyl)ethyl]-6-(trifluoromethyl.. |
B | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 10 | |
8f4y[1] | S |
XE0
4-[2-(2,4-dichlorophenyl)ethyl]-6-(trifluoromethyl.. |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
7orr[1] | F |
PIM
4-PHENYL-1H-IMIDAZOLE[11 atoms] |
A | 100.0 /99.2 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
7orr[1] | G |
PIM
4-PHENYL-1H-IMIDAZOLE[11 atoms] |
A | 100.0 /99.2 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
7oru[1] | E |
2AQ
QUINOLIN-2-AMINE[11 atoms] |
A | 100.0 /99.2 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
7orv[1] | F |
X4V
N~4~,N~4~-dimethylpyridine-2,4-diamine[10 atoms] |
A | 100.0 /99.2 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
7orw[1] | D |
7WA
1H-benzimidazol-4-amine[10 atoms] |
A | 100.0 /99.2 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2fyg[1] | B |
ZN
ZINC ION[1 atoms] |
A | 100.0 /98.4 |
4 /4 |
Q6JH39_CVHSA Replicase polyprotein 1ab | |
2fyg[169] | C |
ZN
ZINC ION[1 atoms] |
A | 100.0 /98.4 |
4 /4 |
Q6JH39_CVHSA Replicase polyprotein 1ab | |
2g9t[81] | Y |
ZN
ZINC ION[1 atoms] |
A | 100.0 /98.3 |
4 /4 |
Q692E5_CVHSA orf1a polyprotein | |
2xyq[5] | I |
ZN
ZINC ION[1 atoms] |
B | 100.0 /98.4 |
4 /4 |
R1AB_CVHSA NON-STRUCTURAL PROTEIN 10 | |
3r24[29] | D |
ZN
ZINC ION[1 atoms] |
B | 100.0 /98.3 |
4 /4 |
R1A_CVHSA Non-structural protein 10 and Non-structural prote.. | |
5c8s[9] | E |
ZN
ZINC ION[1 atoms] |
A | 100.0 /98.5 |
4 /4 |
R1AB_CVHSA Non-structural protein 10 | |
6w61[26] | I |
ZN
ZINC ION[1 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
6yz1[4] | E |
ZN
ZINC ION[1 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 nsp10 | |
6zct[7] | B |
ZN
ZINC ION[1 atoms] |
A | 100.0 /99.2 |
4 /4 |
R1A_SARS2 nsp10 | |
7jyy[8] | O |
ZN
ZINC ION[1 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
6w75[1] | R |
NA
SODIUM ION[1 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
6w75[2] | JA |
NA
SODIUM ION[1 atoms] |
D | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
7jyy[4] | I |
NA
SODIUM ION[1 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7ult[1] | P |
NA
SODIUM ION[1 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
7ult[2] | Q |
NA
SODIUM ION[1 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
2xyr[2] | L |
CL
CHLORIDE ION[1 atoms] |
B | 50.0 /98.3 |
2 /2 |
R1AB_CVHSA NON-STRUCTURAL PROTEIN 10 | |
6wrz[2] | U |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
6wvn[1] | CA |
CL
CHLORIDE ION[1 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
6zpe[6] | E |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /99.2 |
5 /5 |
R1AB_SARS2 Replicase polyprotein 1ab | |
6zpe[3] | G |
CL
CHLORIDE ION[1 atoms] |
A | 66.7 /99.2 |
3 /3 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7orr[3] | K |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /99.2 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
7orv[1] | H |
CL
CHLORIDE ION[1 atoms] |
A | 100.0 /99.2 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2g9t[48] | B | Q692E5_CVHSA orf1a polyprotein[119 aa] | A | 100.0 /98.3 |
6 /6 |
Q692E5_CVHSA orf1a polyprotein | |
2g9t[96] | C | Q692E5_CVHSA orf1a polyprotein[118 aa] | A | 100.0 /98.3 |
7 /7 |
Q692E5_CVHSA orf1a polyprotein | |
2g9t[48] | D | Q692E5_CVHSA orf1a polyprotein[118 aa] | A | 100.0 /98.3 |
5 /5 |
Q692E5_CVHSA orf1a polyprotein | |
2g9t[48] | H | Q692E5_CVHSA orf1a polyprotein[118 aa] | A | 100.0 /98.3 |
6 /6 |
Q692E5_CVHSA orf1a polyprotein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
PRECIPITANT | |||||||
139 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
2fyg[3] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /98.4 |
8 /8 |
Q6JH39_CVHSA Replicase polyprotein 1ab | |
6zpe[2] | D |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /99.2 |
4 /4 |
R1AB_SARS2 Replicase polyprotein 1ab | |
7orv[2] | G |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /99.2 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
8rv6[1] | I |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /100.0 |
7 /7 |
R1A_SARS2 Non-structural protein 10 | |
8rv8[2] | H |
GOL
GLYCEROL[6 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1A_SARS2 Non-structural protein 10 | |
9fw2[1] | E |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1A_SARS2 Non-structural protein 11 | |
9fz4[1] | H |
GOL
GLYCEROL[6 atoms] |
A | 100.0 /100.0 |
1 /1 |
R1A_SARS2 Non-structural protein 11 | |
6w61[27] | G |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
6wks[22] | H |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[22] | AA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[11] | BA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[1] | DA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[1] | E |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[1] | FA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[1] | W |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7mc5[1] | Z |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
8bsd[5] | KA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
8ot0[1] | R |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
8oto[1] | GA |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
9gue[2] | Z |
EDO
1,2-ETHANEDIOL[4 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
6w75[1] | KA |
FMT
FORMIC ACID[3 atoms] |
D | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
6wjt[1] | P |
FMT
FORMIC ACID[3 atoms] |
B | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
7jz0[1] | Q |
FMT
FORMIC ACID[3 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
7jz0[1] | R |
FMT
FORMIC ACID[3 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
7jz0[1] | S |
FMT
FORMIC ACID[3 atoms] |
B | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Non-structural protein 10 | |
7ult[1] | GA |
FMT
FORMIC ACID[3 atoms] |
D | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
8f4y[1] | T |
FMT
FORMIC ACID[3 atoms] |
B | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 10 | |
6wq3[3] | I |
SO4
SULFATE ION[5 atoms] |
B | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 10 | |
6wq3[3] | N |
SO4
SULFATE ION[5 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
6wq3[2] | O |
SO4
SULFATE ION[5 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
7lw4[1] | R |
ACT
ACETATE ION[4 atoms] |
B | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 10 | |
9gny[3] | AA |
IMD
IMIDAZOLE[5 atoms] |
B | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
9grq[1] | IA |
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID[12 atoms] |
B | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 10 | |
7orr[4] | D |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 85.7 /99.2 |
7 /9 |
R1AB_SARS2 Non-structural protein 10 | |
7orr[4] | E |
DMS
DIMETHYL SULFOXIDE[4 atoms] |
A | 100.0 /99.2 |
3 /3 |
R1AB_SARS2 Non-structural protein 10 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |