PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           570,830 sequences; 206,533,160 total letters

Results from round 1


Query= YP_009725306.1 nsp10 [Severe acute respiratory syndrome coronavirus
2]

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp...  302     6e-95
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  301     2e-94
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R...  298     2e-93
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H...  298     2e-93
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  297     4e-93
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  297     5e-93
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi...  296     6e-93
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  296     1e-92
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2...  292     2e-91
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  291     4e-91
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H...  204     2e-60
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  203     3e-60
sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi...  179     1e-51
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res...  178     1e-51
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H...  172     2e-49
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1...  172     2e-49
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus...  171     3e-49
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus...  171     3e-49
sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H...  168     4e-48
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus...  167     7e-48
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus...  167     1e-47
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus...  167     1e-47
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus...  167     1e-47
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir...  166     2e-47
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir...  166     2e-47
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir...  166     2e-47
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru...  163     3e-46
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru...  163     3e-46
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi...  163     3e-46
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi...  163     3e-46
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru...  161     9e-46
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru...  161     1e-45
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi...  161     1e-45
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi...  161     1e-45
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus...  161     1e-45
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir...  161     2e-45
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus...  161     2e-45
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus...  161     2e-45
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus...  160     2e-45
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir...  160     2e-45
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir...  160     2e-45
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir...  160     2e-45
sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus...  159     1e-44
sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b...  157     3e-44
sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5...  157     4e-44
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ...  157     4e-44
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b...  157     4e-44
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious...  157     5e-44
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus...  157     5e-44
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou...  156     5e-44
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious...  156     5e-44
sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ...  155     2e-43
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi...  154     2e-43
sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus...  151     4e-42
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir...  151     5e-42
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir...  150     7e-42
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi...  150     1e-41
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss...  150     1e-41
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir...  148     5e-41
sp|Q5H390|TRMD_XANOR tRNA (guanine-N(1)-)-methyltransferase OS=Xa...  31.2    2.9  
sp|B2SJV1|TRMD_XANOP tRNA (guanine-N(1)-)-methyltransferase OS=Xa...  31.2    2.9  
sp|Q2P651|TRMD_XANOM tRNA (guanine-N(1)-)-methyltransferase OS=Xa...  31.2    2.9  
sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis th...  30.4    5.7  
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate p...  30.0    7.9  


>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405

 Score = 302 bits (774),  Expect = 6e-95, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4254  AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4313

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC
Sbjct  4314  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  4373

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPMLQ
Sbjct  4374  GMWKGYGCSCDQLREPMLQ  4392


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 301 bits (771),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4254  AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4313

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC
Sbjct  4314  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  4373

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPMLQ
Sbjct  4374  GMWKGYGCSCDQLREPMLQ  4392


>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380

 Score = 298 bits (763),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4229  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4288

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4289  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4348

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4349  GMWKGYGCSCDQLREPMMQ  4367


>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus 
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376

 Score = 298 bits (762),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4225  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4284

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4285  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4344

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4345  GMWKGYGCSCDQLREPMMQ  4363


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 297 bits (760),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4229  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4288

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4289  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4348

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4349  GMWKGYGCSCDQLREPMMQ  4367


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 297 bits (760),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4225  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4284

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4285  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4344

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4345  GMWKGYGCSCDQLREPMMQ  4363


>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382

 Score = 296 bits (759),  Expect = 6e-93, Method: Compositional matrix adjust.
 Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4231  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4290

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4291  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4350

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREP++Q
Sbjct  4351  GMWKGYGCSCDQLREPLMQ  4369


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 296 bits (757),  Expect = 1e-92, Method: Compositional matrix adjust.
 Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4231  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4290

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4291  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4350

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREP++Q
Sbjct  4351  GMWKGYGCSCDQLREPLMQ  4369


>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388

 Score = 292 bits (748),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4237  AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4296

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC
Sbjct  4297  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC  4356

Query  121   GMWKGYGCSCDQLREPMLQ  139
             G WKGYGCSCDQLREPM+Q
Sbjct  4357  GTWKGYGCSCDQLREPMMQ  4375


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 291 bits (746),  Expect = 4e-91, Method: Compositional matrix adjust.
 Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4237  AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4296

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC
Sbjct  4297  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC  4356

Query  121   GMWKGYGCSCDQLREPMLQ  139
             G WKGYGCSCDQLREPM+Q
Sbjct  4357  GTWKGYGCSCDQLREPMMQ  4375


>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus 
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248

 Score = 204 bits (518),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ATEV +NS++LS C+F+VD    YKDYL +GG PI NCVKML  HTGTG AIT  P+
Sbjct  4095  AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD  4154

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN+DQESFGGASCCLYCRCHI+HP   G C  KGK+VQIP    NDP+GF ++N VC VC
Sbjct  4155  ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC  4214

Query  121   GMWKGYGCSCDQLREPMLQ  139
              MW+GYGC C  LRE  LQ
Sbjct  4215  NMWQGYGCPCSSLREINLQ  4233


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 203 bits (516),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ATEV +NS++LS C+F+VD    YKDYL +GG PI NCVKML  HTGTG AIT  P+
Sbjct  4095  AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD  4154

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN+DQESFGGASCCLYCRCHI+HP   G C  KGK+VQIP    NDP+GF ++N VC VC
Sbjct  4155  ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC  4214

Query  121   GMWKGYGCSCDQLREPMLQ  139
              MW+GYGC C  LRE  LQ
Sbjct  4215  NMWQGYGCPCSSLREINLQ  4233


>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory 
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=1a PE=1 SV=1
Length=4391

 Score = 179 bits (453),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE  +NS+VLS   F VD  KAY D++ +GG P+TNCVKML   TGTG AI+V PE
Sbjct  4238  AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE  4297

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +  DQE++GGAS CLYCR HI+HP+  G C  KGK+VQIP  C  DPVGF L NT C VC
Sbjct  4298  STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC  4357

Query  121   GMWKGYGCSCDQLREPML  138
               W GYGC+CD LR+  L
Sbjct  4358  QYWIGYGCNCDSLRQAAL  4375


>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East 
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=rep PE=1 SV=1
Length=7078

 Score = 178 bits (452),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE  +NS+VLS   F VD  KAY D++ +GG P+TNCVKML   TGTG AI+V PE
Sbjct  4238  AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE  4297

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +  DQE++GGAS CLYCR HI+HP+  G C  KGK+VQIP  C  DPVGF L NT C VC
Sbjct  4298  STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC  4357

Query  121   GMWKGYGCSCDQLREPML  138
               W GYGC+CD LR+  L
Sbjct  4358  QYWIGYGCNCDSLRQAAL  4375


>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus 
HKU4 OX=694007 GN=1a PE=1 SV=1
Length=4434

 Score = 172 bits (435),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4282  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4341

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4342  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHV-RDPVGFLLKNVPCNVC  4400

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4401  QYWVGYGCNCDALR  4414


>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 
133/2005 OX=389230 GN=1a PE=3 SV=1
Length=4441

 Score = 172 bits (435),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4289  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4348

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4349  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHV-RDPVGFLLKNVPCNVC  4407

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4408  QYWVGYGCNCDALR  4421


>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119

 Score = 171 bits (434),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4282  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4341

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4342  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4400

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4401  QYWVGYGCNCDALR  4414


>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126

 Score = 171 bits (434),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4289  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4348

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4349  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4407

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4408  QYWVGYGCNCDALR  4421


>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus 
HKU5 OX=694008 GN=1a PE=3 SV=1
Length=4481

 Score = 168 bits (426),  Expect = 4e-48, Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE   NS+VLS   F+VD  KAY D++ +GG P+TNCVKML   TGTG A++V PE
Sbjct  4329  AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE  4388

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN DQ+++GGAS CLYCR HI+HP+  G C  KGK+VQ+P     DPVGF L+NT C VC
Sbjct  4389  ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC  4447

Query  121   GMWKGYGCSCDQLR  134
               W G+GC+CD LR
Sbjct  4448  QFWIGHGCNCDALR  4461


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182

 Score = 167 bits (424),  Expect = 7e-48, Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE   NS+VLS   F+VD  KAY D++ +GG P+TNCVKML   TGTG A++V PE
Sbjct  4329  AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE  4388

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN DQ+++GGAS CLYCR HI+HP+  G C  KGK+VQ+P     DPVGF L+NT C VC
Sbjct  4389  ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC  4447

Query  121   GMWKGYGCSCDQLR  134
               W G+GC+CD LR
Sbjct  4448  QFWIGHGCNCDALR  4461


>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1
Length=4441

 Score = 167 bits (423),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4291  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4350

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4351  ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4409

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4410  GFWRDGSCSC  4419


>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1
Length=4421

 Score = 167 bits (422),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4271  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4330

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4331  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4389

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4390  GFWRDGSCSC  4399


>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1
Length=4471

 Score = 167 bits (422),  Expect = 1e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4321  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4380

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4381  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4439

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4440  GFWRDGSCSC  4449


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152

 Score = 166 bits (421),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4291  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4350

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4351  ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4409

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4410  GFWRDGSCSC  4419


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132

 Score = 166 bits (420),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4271  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4330

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4331  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4389

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4390  GFWRDGSCSC  4399


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182

 Score = 166 bits (420),  Expect = 2e-47, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4321  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4380

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4381  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4439

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4440  GFWRDGSCSC  4449


>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus 
(strain JHM) OX=11144 GN=1a PE=1 SV=1
Length=4474

 Score = 163 bits (412),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4324  AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE  4383

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4384  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4442

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4443  GFWRDGSCSC  4452


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus 
(strain A59) OX=11142 GN=1a PE=1 SV=1
Length=4468

 Score = 163 bits (412),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4318  AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE  4377

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4378  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4436

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4437  GFWRDGSCSC  4446


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176

 Score = 163 bits (412),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4318  AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE  4377

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4378  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4436

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4437  GFWRDGSCSC  4446


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus 
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180

 Score = 163 bits (412),  Expect = 3e-46, Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4324  AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE  4383

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4384  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4442

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4443  GFWRDGSCSC  4452


>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1
Length=4383

 Score = 161 bits (408),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1
Length=4383

 Score = 161 bits (408),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094

 Score = 161 bits (408),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094

 Score = 161 bits (408),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus 
(strain 2) OX=76344 GN=1a PE=3 SV=1
Length=4416

 Score = 161 bits (407),  Expect = 1e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS + S CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4266  AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE  4325

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4326  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4384

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4385  GFWRDGSCSC  4394


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124

 Score = 161 bits (407),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS + S CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4266  AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE  4325

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4326  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4384

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4385  GFWRDGSCSC  4394


>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus 
OC43 OX=31631 GN=1a PE=1 SV=1
Length=4383

 Score = 161 bits (407),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=1a PE=3 SV=1
Length=4383

 Score = 161 bits (407),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=1a PE=3 SV=1
Length=4383

 Score = 160 bits (406),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus 
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095

 Score = 160 bits (406),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094

 Score = 160 bits (406),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059

 Score = 160 bits (406),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus 
NL63 OX=277944 GN=1a PE=1 SV=1
Length=4060

 Score = 159 bits (401),  Expect = 1e-44, Method: Composition-based stats.
 Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE+  NS +L+ CAF+VD A  Y + +  G +P++NC+KML    G GQAIT + +
Sbjct  3909  AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD  3968

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN +Q+S+GGAS CLYCR H+ HP+  G+C  KGK VQ+P  C  DP+ F L+N VC VC
Sbjct  3969  ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC  4027

Query  121   GMWKGYGCSCDQ  132
             G W G+GC+CD+
Sbjct  4028  GCWLGHGCACDR  4039


>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1
Length=3953

 Score = 157 bits (397),  Expect = 3e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3788  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3847

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3848  TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3906

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3907  TVCQCWIGYGCQCDSLRQP  3925


>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 
512/2005 OX=693999 GN=1a PE=3 SV=1
Length=4128

 Score = 157 bits (397),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD  K Y D + SG +P+ NCVKML   +G GQAIT   E
Sbjct  3977  AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE  4036

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC L+GKYVQ+P     DP+ F L+NTVC VC
Sbjct  4037  ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC  4095

Query  121   GMWKGYGCSCDQ  132
             G W+  GC+CD+
Sbjct  4096  GCWQANGCTCDR  4107


>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 
SV=1
Length=3951

 Score = 157 bits (396),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1
Length=3951

 Score = 157 bits (396),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631

 Score = 157 bits (396),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3788  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3847

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3848  TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3906

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3907  TVCQCWIGYGCQCDSLRQP  3925


>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793

 Score = 157 bits (396),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD  K Y D + SG +P+ NCVKML   +G GQAIT   E
Sbjct  3977  AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE  4036

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC L+GKYVQ+P     DP+ F L+NTVC VC
Sbjct  4037  ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC  4095

Query  121   GMWKGYGCSCDQ  132
             G W+  GC+CD+
Sbjct  4096  GCWQANGCTCDR  4107


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep 
PE=3 SV=1
Length=6629

 Score = 156 bits (395),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 
SV=1
Length=6629

 Score = 156 bits (395),  Expect = 5e-44, Method: Compositional matrix adjust.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1
Length=4117

 Score = 155 bits (392),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD AK Y D + SG +P+ NCVKML   +G GQA+T   E
Sbjct  3966  AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE  4025

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC LKGKYVQ+P     DP+ F L+N VC VC
Sbjct  4026  ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC  4084

Query  121   GMWKGYGCSCDQ  132
             G W   GC+CD+
Sbjct  4085  GCWLSNGCTCDR  4096


>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781

 Score = 154 bits (390),  Expect = 2e-43, Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD AK Y D + SG +P+ NCVKML   +G GQA+T   E
Sbjct  3966  AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE  4025

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC LKGKYVQ+P     DP+ F L+N VC VC
Sbjct  4026  ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC  4084

Query  121   GMWKGYGCSCDQ  132
             G W   GC+CD+
Sbjct  4085  GCWLSNGCTCDR  4096


>sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 
229E OX=11137 GN=1a PE=1 SV=1
Length=4085

 Score = 151 bits (381),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NS +L+ C+FAVD A AY D +  G +P+ NCVKML   +G+GQAIT T +
Sbjct  3934  AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID  3993

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+++GGAS C+YCR H+ HP   GFC  KGK+VQ+P    NDP+ F L+NTVC VC
Sbjct  3994  SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC  4052

Query  121   GMWKGYGCSCDQ  132
             G W  +GC+CD+
Sbjct  4053  GCWLNHGCTCDR  4064


>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 
229E OX=11137 GN=rep PE=1 SV=1
Length=6758

 Score = 151 bits (381),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NS +L+ C+FAVD A AY D +  G +P+ NCVKML   +G+GQAIT T +
Sbjct  3934  AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID  3993

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+++GGAS C+YCR H+ HP   GFC  KGK+VQ+P    NDP+ F L+NTVC VC
Sbjct  3994  SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC  4052

Query  121   GMWKGYGCSCDQ  132
             G W  +GC+CD+
Sbjct  4053  GCWLNHGCTCDR  4064


>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709

 Score = 150 bits (380),  Expect = 7e-42, Method: Compositional matrix adjust.
 Identities = 72/132 (55%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS +L+ CAFA D AKAY D +  G QP+TNCVKML    G G AIT   E
Sbjct  3889  AGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVE  3948

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQ+PT    DP+ F ++N VC VC
Sbjct  3949  SNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVC  4007

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  4008  GCWLTNGCMCDR  4019


>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=rep PE=1 SV=1
Length=6684

 Score = 150 bits (379),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS++L+ CAF+ D AKAY D +  G QP+ NCVKML    G G A+T   E
Sbjct  3864  AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE  3923

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQIPT    DP+ F ++N VC VC
Sbjct  3924  ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC  3982

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  3983  GCWLNNGCMCDR  3994


>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=1a PE=1 SV=1
Length=4017

 Score = 150 bits (379),  Expect = 1e-41, Method: Compositional matrix adjust.
 Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS++L+ CAF+ D AKAY D +  G QP+ NCVKML    G G A+T   E
Sbjct  3864  AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE  3923

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQIPT    DP+ F ++N VC VC
Sbjct  3924  ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC  3982

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  3983  GCWLNNGCMCDR  3994


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus 
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729

 Score = 148 bits (374),  Expect = 5e-41, Method: Compositional matrix adjust.
 Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE+  NS +L+ CAF+VD A  Y + +  G +P++NC+KML    G GQAIT + +
Sbjct  3909  AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD  3968

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN +Q+S+GGAS CLYCR H+ HP+  G+C  KGK VQ+P  C  DP+ F L+N VC VC
Sbjct  3969  ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC  4027

Query  121   GMWKGYGCSCDQ  132
             G W G+GC+CD+
Sbjct  4028  GCWLGHGCACDR  4039


>sp|Q5H390|TRMD_XANOR tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas 
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 
GN=trmD PE=3 SV=2
Length=259

 Score = 31.2 bits (69),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query  15   SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC  74
             F A AVD   +  DY+ SGG+     V  + T    G    +    +  Q+SF G    
Sbjct  121  RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL  177

Query  75   LYCRCHIDHPNPKGFCDL  92
            L C  H  HP+   + D+
Sbjct  178  LDC-PHYSHPSSHAWGDV  194


>sp|B2SJV1|TRMD_XANOP tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas 
oryzae pv. oryzae (strain PXO99A) OX=360094 GN=trmD 
PE=3 SV=1
Length=259

 Score = 31.2 bits (69),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query  15   SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC  74
             F A AVD   +  DY+ SGG+     V  + T    G    +    +  Q+SF G    
Sbjct  121  RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL  177

Query  75   LYCRCHIDHPNPKGFCDL  92
            L C  H  HP+   + D+
Sbjct  178  LDC-PHYSHPSSHAWGDV  194


>sp|Q2P651|TRMD_XANOM tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas 
oryzae pv. oryzae (strain MAFF 311018) OX=342109 
GN=trmD PE=3 SV=1
Length=259

 Score = 31.2 bits (69),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query  15   SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC  74
             F A AVD   +  DY+ SGG+     V  + T    G    +    +  Q+SF G    
Sbjct  121  RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL  177

Query  75   LYCRCHIDHPNPKGFCDL  92
            L C  H  HP+   + D+
Sbjct  178  LDC-PHYSHPSSHAWGDV  194


>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis 
thaliana OX=3702 GN=TT1 PE=1 SV=1
Length=303

 Score = 30.4 bits (67),  Expect = 5.7, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 24/59 (41%), Gaps = 1/59 (2%)

Query  73   CCLY-CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC  130
            CC+  CR HIDHP  K   D +           + P    L   +  V G W+ +  +C
Sbjct  193  CCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNC  251


>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate 
proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 
PE=1 SV=1
Length=3707

 Score = 30.0 bits (66),  Expect = 7.9, Method: Compositional matrix adjust.
 Identities = 18/48 (38%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query  31    LASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR  78
             L+S GQ +     ML  H G+G  + V+PE     E   G +  LYCR
Sbjct  1935  LSSAGQHVARA--MLQVHGGSGPRVQVSPERTQVHE---GRTVRLYCR  1977



Lambda      K        H        a         alpha
   0.322    0.135    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 5150839400
Results from round 2


Query= YP_009725306.1 nsp10 [Severe acute respiratory syndrome coronavirus
2]

Length=139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R...  260     3e-80
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  260     4e-80
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  259     6e-80
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H...  259     7e-80
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi...  258     1e-79
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  258     1e-79
sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp...  257     3e-79
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2...  257     4e-79
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  257     4e-79
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  257     4e-79
sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi...  250     1e-76
sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res...  249     2e-76
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H...  246     2e-75
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  245     5e-75
sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss...  243     3e-74
sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi...  241     1e-73
sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir...  241     2e-73
sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H...  240     3e-73
sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus...  239     5e-73
sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5...  239     5e-73
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus...  238     1e-72
sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ...  237     2e-72
sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus...  237     2e-72
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi...  237     5e-72
sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir...  236     6e-72
sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus...  236     7e-72
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir...  235     2e-71
sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru...  234     3e-71
sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru...  234     3e-71
sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi...  234     5e-71
sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi...  234     5e-71
sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus...  232     1e-70
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H...  232     2e-70
sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus...  232     2e-70
sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus...  232     2e-70
sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus...  232     2e-70
sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir...  232     2e-70
sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir...  232     2e-70
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1...  232     2e-70
sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir...  232     2e-70
sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus...  232     3e-70
sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus...  232     3e-70
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus...  232     3e-70
sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi...  232     3e-70
sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi...  231     3e-70
sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir...  231     4e-70
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus...  231     4e-70
sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir...  231     4e-70
sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir...  231     4e-70
sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru...  230     8e-70
sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru...  230     1e-69
sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir...  229     1e-69
sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus...  229     3e-69
sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b...  227     1e-68
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ...  227     1e-68
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b...  227     1e-68
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou...  226     3e-68
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious...  226     3e-68
sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious...  225     3e-68

Sequences not found previously or not previously below threshold:

sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus...  40.3    0.002
sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir...  40.3    0.003
sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing pro...  34.9    0.17 
sp|Q924S8|SPRE1_MOUSE Sprouty-related, EVH1 domain-containing pro...  33.8    0.33 
sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus OX=10116 GN=Cpn...  33.0    0.71 
sp|Q1RLL3|CPNE9_MOUSE Copine-9 OS=Mus musculus OX=10090 GN=Cpne9 ...  33.0    0.71 
sp|Q66JG9|SPRE1_XENTR Sprouty-related, EVH1 domain-containing pro...  33.0    0.74 
sp|Q8IYJ1|CPNE9_HUMAN Copine-9 OS=Homo sapiens OX=9606 GN=CPNE9 P...  32.6    0.93 
sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 ...  32.6    0.95 
sp|Q58087|Y674_METJA Uncharacterized protein MJ0674 OS=Methanocal...  31.5    2.2  
sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 P...  31.5    2.5  
sp|Q28U74|SUCC_JANSC Succinate--CoA ligase [ADP-forming] subunit ...  30.3    6.3  
sp|Q6SWC8|UL01_HCMVM Glycoprotein UL1 OS=Human cytomegalovirus (s...  29.5    8.6  


>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380

 Score = 260 bits (665),  Expect = 3e-80, Method: Composition-based stats.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4229  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4288

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4289  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4348

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4349  GMWKGYGCSCDQLREPMMQ  4367


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 260 bits (664),  Expect = 4e-80, Method: Composition-based stats.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4229  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4288

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4289  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4348

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4349  GMWKGYGCSCDQLREPMMQ  4367


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 259 bits (663),  Expect = 6e-80, Method: Composition-based stats.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4225  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4284

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4285  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4344

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4345  GMWKGYGCSCDQLREPMMQ  4363


>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus 
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376

 Score = 259 bits (662),  Expect = 7e-80, Method: Composition-based stats.
 Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4225  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4284

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4285  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4344

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPM+Q
Sbjct  4345  GMWKGYGCSCDQLREPMMQ  4363


>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382

 Score = 258 bits (660),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4231  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4290

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4291  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4350

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREP++Q
Sbjct  4351  GMWKGYGCSCDQLREPLMQ  4369


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 258 bits (660),  Expect = 1e-79, Method: Composition-based stats.
 Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4231  AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4290

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC
Sbjct  4291  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC  4350

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREP++Q
Sbjct  4351  GMWKGYGCSCDQLREPLMQ  4369


>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405

 Score = 257 bits (657),  Expect = 3e-79, Method: Composition-based stats.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4254  AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4313

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC
Sbjct  4314  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  4373

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPMLQ
Sbjct  4374  GMWKGYGCSCDQLREPMLQ  4392


>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388

 Score = 257 bits (657),  Expect = 4e-79, Method: Composition-based stats.
 Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4237  AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4296

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC
Sbjct  4297  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC  4356

Query  121   GMWKGYGCSCDQLREPMLQ  139
             G WKGYGCSCDQLREPM+Q
Sbjct  4357  GTWKGYGCSCDQLREPMMQ  4375


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 257 bits (656),  Expect = 4e-79, Method: Composition-based stats.
 Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4254  AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4313

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC
Sbjct  4314  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  4373

Query  121   GMWKGYGCSCDQLREPMLQ  139
             GMWKGYGCSCDQLREPMLQ
Sbjct  4374  GMWKGYGCSCDQLREPMLQ  4392


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 257 bits (656),  Expect = 4e-79, Method: Composition-based stats.
 Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE
Sbjct  4237  AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  4296

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC
Sbjct  4297  ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC  4356

Query  121   GMWKGYGCSCDQLREPMLQ  139
             G WKGYGCSCDQLREPM+Q
Sbjct  4357  GTWKGYGCSCDQLREPMMQ  4375


>sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory 
syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=1a PE=1 SV=1
Length=4391

 Score = 250 bits (638),  Expect = 1e-76, Method: Composition-based stats.
 Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE  +NS+VLS   F VD  KAY D++ +GG P+TNCVKML   TGTG AI+V PE
Sbjct  4238  AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE  4297

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +  DQE++GGAS CLYCR HI+HP+  G C  KGK+VQIP  C  DPVGF L NT C VC
Sbjct  4298  STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC  4357

Query  121   GMWKGYGCSCDQLREPML  138
               W GYGC+CD LR+  L
Sbjct  4358  QYWIGYGCNCDSLRQAAL  4375


>sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East 
respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) 
OX=1263720 GN=rep PE=1 SV=1
Length=7078

 Score = 249 bits (636),  Expect = 2e-76, Method: Composition-based stats.
 Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE  +NS+VLS   F VD  KAY D++ +GG P+TNCVKML   TGTG AI+V PE
Sbjct  4238  AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE  4297

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +  DQE++GGAS CLYCR HI+HP+  G C  KGK+VQIP  C  DPVGF L NT C VC
Sbjct  4298  STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC  4357

Query  121   GMWKGYGCSCDQLREPML  138
               W GYGC+CD LR+  L
Sbjct  4358  QYWIGYGCNCDSLRQAAL  4375


>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus 
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248

 Score = 246 bits (629),  Expect = 2e-75, Method: Composition-based stats.
 Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ATEV +NS++LS C+F+VD    YKDYL +GG PI NCVKML  HTGTG AIT  P+
Sbjct  4095  AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD  4154

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN+DQESFGGASCCLYCRCHI+HP   G C  KGK+VQIP    NDP+GF ++N VC VC
Sbjct  4155  ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC  4214

Query  121   GMWKGYGCSCDQLREPMLQ  139
              MW+GYGC C  LRE  LQ
Sbjct  4215  NMWQGYGCPCSSLREINLQ  4233


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 245 bits (626),  Expect = 5e-75, Method: Composition-based stats.
 Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ATEV +NS++LS C+F+VD    YKDYL +GG PI NCVKML  HTGTG AIT  P+
Sbjct  4095  AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD  4154

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN+DQESFGGASCCLYCRCHI+HP   G C  KGK+VQIP    NDP+GF ++N VC VC
Sbjct  4155  ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC  4214

Query  121   GMWKGYGCSCDQLREPMLQ  139
              MW+GYGC C  LRE  LQ
Sbjct  4215  NMWQGYGCPCSSLREINLQ  4233


>sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=1a PE=1 SV=1
Length=4017

 Score = 243 bits (620),  Expect = 3e-74, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS++L+ CAF+ D AKAY D +  G QP+ NCVKML    G G A+T   E
Sbjct  3864  AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE  3923

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQIPT    DP+ F ++N VC VC
Sbjct  3924  ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC  3982

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  3983  GCWLNNGCMCDR  3994


>sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible 
gastroenteritis coronavirus (strain Purdue) OX=11151 
GN=rep PE=1 SV=1
Length=6684

 Score = 241 bits (616),  Expect = 1e-73, Method: Composition-based stats.
 Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS++L+ CAF+ D AKAY D +  G QP+ NCVKML    G G A+T   E
Sbjct  3864  AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE  3923

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQIPT    DP+ F ++N VC VC
Sbjct  3924  ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC  3982

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  3983  GCWLNNGCMCDR  3994


>sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus 
(strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2
Length=6709

 Score = 241 bits (615),  Expect = 2e-73, Method: Composition-based stats.
 Identities = 72/132 (55%), Positives = 89/132 (67%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE P+NS +L+ CAFA D AKAY D +  G QP+TNCVKML    G G AIT   E
Sbjct  3889  AGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVE  3948

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+S+GGAS C+YCRCH++HP   G C  KGK+VQ+PT    DP+ F ++N VC VC
Sbjct  3949  SNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVC  4007

Query  121   GMWKGYGCSCDQ  132
             G W   GC CD+
Sbjct  4008  GCWLTNGCMCDR  4019


>sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus 
HKU5 OX=694008 GN=1a PE=3 SV=1
Length=4481

 Score = 240 bits (613),  Expect = 3e-73, Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE   NS+VLS   F+VD  KAY D++ +GG P+TNCVKML   TGTG A++V PE
Sbjct  4329  AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE  4388

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN DQ+++GGAS CLYCR HI+HP+  G C  KGK+VQ+P     DPVGF L+NT C VC
Sbjct  4389  ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC  4447

Query  121   GMWKGYGCSCDQLR  134
               W G+GC+CD LR
Sbjct  4448  QFWIGHGCNCDALR  4461


>sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU5 OX=694008 GN=rep PE=3 SV=1
Length=7182

 Score = 239 bits (611),  Expect = 5e-73, Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG+ TE   NS+VLS   F+VD  KAY D++ +GG P+TNCVKML   TGTG A++V PE
Sbjct  4329  AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE  4388

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN DQ+++GGAS CLYCR HI+HP+  G C  KGK+VQ+P     DPVGF L+NT C VC
Sbjct  4389  ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC  4447

Query  121   GMWKGYGCSCDQLR  134
               W G+GC+CD LR
Sbjct  4448  QFWIGHGCNCDALR  4461


>sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 
512/2005 OX=693999 GN=1a PE=3 SV=1
Length=4128

 Score = 239 bits (611),  Expect = 5e-73, Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD  K Y D + SG +P+ NCVKML   +G GQAIT   E
Sbjct  3977  AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE  4036

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC L+GKYVQ+P     DP+ F L+NTVC VC
Sbjct  4037  ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC  4095

Query  121   GMWKGYGCSCDQ  132
             G W+  GC+CD+
Sbjct  4096  GCWQANGCTCDR  4107


>sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 
512/2005 OX=693999 GN=rep PE=3 SV=1
Length=6793

 Score = 238 bits (608),  Expect = 1e-72, Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD  K Y D + SG +P+ NCVKML   +G GQAIT   E
Sbjct  3977  AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE  4036

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC L+GKYVQ+P     DP+ F L+NTVC VC
Sbjct  4037  ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC  4095

Query  121   GMWKGYGCSCDQ  132
             G W+  GC+CD+
Sbjct  4096  GCWQANGCTCDR  4107


>sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1
Length=4117

 Score = 237 bits (606),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD AK Y D + SG +P+ NCVKML   +G GQA+T   E
Sbjct  3966  AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE  4025

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC LKGKYVQ+P     DP+ F L+N VC VC
Sbjct  4026  ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC  4084

Query  121   GMWKGYGCSCDQ  132
             G W   GC+CD+
Sbjct  4085  GCWLSNGCTCDR  4096


>sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 
229E OX=11137 GN=1a PE=1 SV=1
Length=4085

 Score = 237 bits (606),  Expect = 2e-72, Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NS +L+ C+FAVD A AY D +  G +P+ NCVKML   +G+GQAIT T +
Sbjct  3934  AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID  3993

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+++GGAS C+YCR H+ HP   GFC  KGK+VQ+P    NDP+ F L+NTVC VC
Sbjct  3994  SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC  4052

Query  121   GMWKGYGCSCDQ  132
             G W  +GC+CD+
Sbjct  4053  GCWLNHGCTCDR  4064


>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic 
diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1
Length=6781

 Score = 237 bits (604),  Expect = 5e-72, Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE   NS++L+ CAFAVD AK Y D + SG +P+ NCVKML   +G GQA+T   E
Sbjct  3966  AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE  4025

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A+ +Q+S+GGAS CLYCR H++HP+  GFC LKGKYVQ+P     DP+ F L+N VC VC
Sbjct  4026  ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC  4084

Query  121   GMWKGYGCSCDQ  132
             G W   GC+CD+
Sbjct  4085  GCWLSNGCTCDR  4096


>sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 
229E OX=11137 GN=rep PE=1 SV=1
Length=6758

 Score = 236 bits (603),  Expect = 6e-72, Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NS +L+ C+FAVD A AY D +  G +P+ NCVKML   +G+GQAIT T +
Sbjct  3934  AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID  3993

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             +N  Q+++GGAS C+YCR H+ HP   GFC  KGK+VQ+P    NDP+ F L+NTVC VC
Sbjct  3994  SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC  4052

Query  121   GMWKGYGCSCDQ  132
             G W  +GC+CD+
Sbjct  4053  GCWLNHGCTCDR  4064


>sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus 
NL63 OX=277944 GN=1a PE=1 SV=1
Length=4060

 Score = 236 bits (603),  Expect = 7e-72, Method: Composition-based stats.
 Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE+  NS +L+ CAF+VD A  Y + +  G +P++NC+KML    G GQAIT + +
Sbjct  3909  AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD  3968

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN +Q+S+GGAS CLYCR H+ HP+  G+C  KGK VQ+P  C  DP+ F L+N VC VC
Sbjct  3969  ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC  4027

Query  121   GMWKGYGCSCDQ  132
             G W G+GC+CD+
Sbjct  4028  GCWLGHGCACDR  4039


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus 
NL63 OX=277944 GN=rep PE=1 SV=1
Length=6729

 Score = 235 bits (600),  Expect = 2e-71, Method: Composition-based stats.
 Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE+  NS +L+ CAF+VD A  Y + +  G +P++NC+KML    G GQAIT + +
Sbjct  3909  AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD  3968

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             AN +Q+S+GGAS CLYCR H+ HP+  G+C  KGK VQ+P  C  DP+ F L+N VC VC
Sbjct  3969  ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC  4027

Query  121   GMWKGYGCSCDQ  132
             G W G+GC+CD+
Sbjct  4028  GCWLGHGCACDR  4039


>sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1
Length=4383

 Score = 234 bits (598),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1
Length=4383

 Score = 234 bits (598),  Expect = 3e-71, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1
Length=7094

 Score = 234 bits (597),  Expect = 5e-71, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1
Length=7094

 Score = 234 bits (597),  Expect = 5e-71, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus 
OC43 OX=31631 GN=1a PE=1 SV=1
Length=4383

 Score = 232 bits (593),  Expect = 1e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus 
HKU4 OX=694007 GN=1a PE=1 SV=1
Length=4434

 Score = 232 bits (593),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4282  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4341

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4342  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4400

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4401  QYWVGYGCNCDALR  4414


>sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=1a PE=3 SV=1
Length=4383

 Score = 232 bits (592),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=1a PE=3 SV=1
Length=4383

 Score = 232 bits (592),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1
Length=4441

 Score = 232 bits (592),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4291  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4350

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4351  ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4409

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4410  GFWRDGSCSC  4419


>sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Mebus) OX=11132 GN=rep PE=3 SV=1
Length=7094

 Score = 232 bits (592),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus 
OC43 OX=31631 GN=rep PE=1 SV=1
Length=7095

 Score = 232 bits (591),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 
133/2005 OX=389230 GN=1a PE=3 SV=1
Length=4441

 Score = 232 bits (591),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4289  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4348

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4349  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4407

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4408  QYWVGYGCNCDALR  4421


>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus 
(strain Quebec) OX=11133 GN=rep PE=3 SV=1
Length=7059

 Score = 232 bits (591),  Expect = 2e-70, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS++LS CAF+VD  K Y D++  GG PI NCVKMLC H GTG AITV P+
Sbjct  4233  AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD  4292

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A   Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4293  ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC  4351

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4352  GFWRDGSCSC  4361


>sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1
Length=4421

 Score = 232 bits (591),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4271  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4330

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4331  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4389

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4390  GFWRDGSCSC  4399


>sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1
Length=4471

 Score = 232 bits (591),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4321  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4380

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4381  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4439

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4440  GFWRDGSCSC  4449


>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU4 OX=694007 GN=rep PE=1 SV=1
Length=7119

 Score = 232 bits (591),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4282  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4341

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4342  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4400

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4401  QYWVGYGCNCDALR  4414


>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus 
(strain JHM) OX=11144 GN=rep PE=1 SV=1
Length=7180

 Score = 232 bits (591),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4324  AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE  4383

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4384  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4442

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4443  GFWRDGSCSC  4452


>sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain A59) OX=11142 GN=rep PE=1 SV=1
Length=7176

 Score = 231 bits (590),  Expect = 3e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4318  AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE  4377

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4378  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4436

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4437  GFWRDGSCSC  4446


>sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1
Length=7152

 Score = 231 bits (590),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4291  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4350

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4351  ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4409

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4410  GFWRDGSCSC  4419


>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 
133/2005 OX=389230 GN=rep PE=3 SV=1
Length=7126

 Score = 231 bits (590),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG  TE  +NSTVL+  AFAVD AKAY DY+ SGG P++N VKML   TGTG AI+V PE
Sbjct  4289  AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE  4348

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  DQE++GGAS CLYCR HI+HP+  G C  K ++VQIP     DPVGF LKN  C VC
Sbjct  4349  ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC  4407

Query  121   GMWKGYGCSCDQLR  134
               W GYGC+CD LR
Sbjct  4408  QYWVGYGCNCDALR  4421


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1
Length=7132

 Score = 231 bits (589),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4271  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4330

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4331  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4389

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4390  GFWRDGSCSC  4399


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus 
HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1
Length=7182

 Score = 231 bits (589),  Expect = 4e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  ANS++LS CAF+VD  K Y DY+  GG PI NCVKMLC H GTG AIT+ PE
Sbjct  4321  AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE  4380

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A ++Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DP+ + L + VC VC
Sbjct  4381  ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC  4439

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4440  GFWRDGSCSC  4449


>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus 
(strain JHM) OX=11144 GN=1a PE=1 SV=1
Length=4474

 Score = 230 bits (587),  Expect = 8e-70, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4324  AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE  4383

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4384  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4442

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4443  GFWRDGSCSC  4452


>sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus 
(strain A59) OX=11142 GN=1a PE=1 SV=1
Length=4468

 Score = 230 bits (587),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS +LS CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4318  AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE  4377

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4378  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4436

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4437  GFWRDGSCSC  4446


>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus 
(strain 2) OX=76344 GN=rep PE=3 SV=1
Length=7124

 Score = 229 bits (585),  Expect = 1e-69, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS + S CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4266  AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE  4325

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4326  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4384

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4385  GFWRDGSCSC  4394


>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus 
(strain 2) OX=76344 GN=1a PE=3 SV=1
Length=4416

 Score = 229 bits (583),  Expect = 3e-69, Method: Composition-based stats.
 Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%)

Query  1     AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE  60
             AG ATE  +NS + S CAF+VD  K Y DY+  GG P+TNCVKMLC H GTG AIT+ PE
Sbjct  4266  AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE  4325

Query  61    ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC  120
             A  +Q+S+GGAS C+YCR  ++HP+  G C L+GK+VQ+P     DPV + L + VC VC
Sbjct  4326  ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC  4384

Query  121   GMWKGYGCSC  130
             G W+   CSC
Sbjct  4385  GFWRDGSCSC  4394


>sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1
Length=3953

 Score = 227 bits (578),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3788  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3847

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3848  TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3906

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3907  TVCQCWIGYGCQCDSLRQP  3925


>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 
SV=1
Length=3951

 Score = 227 bits (578),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1
Length=3951

 Score = 227 bits (578),  Expect = 1e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette CK) OX=160235 GN=rep 
PE=3 SV=1
Length=6629

 Score = 226 bits (576),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 
SV=1
Length=6629

 Score = 226 bits (576),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3786  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3845

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3846  TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3904

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3905  TVCQCWIGYGCQCDSLRQP  3923


>sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious 
bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1
Length=6631

 Score = 225 bits (575),  Expect = 3e-68, Method: Composition-based stats.
 Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%)

Query  2     GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA  61
             G+ TE      +LS C+FAVD A  Y  Y+A+G QP+ NCVKML  H G+G AIT  P  
Sbjct  3788  GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP  3847

Query  62    NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC  117
               DQ+S+GGAS CLYCR HI HP    N  G C  KG +VQIPTT   DPVGF L+N VC
Sbjct  3848  TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC  3906

Query  118   TVCGMWKGYGCSCDQLREP  136
             TVC  W GYGC CD LR+P
Sbjct  3907  TVCQCWIGYGCQCDSLRQP  3925


>sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus 
(isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 
GN=1a PE=1 SV=1
Length=4555

 Score = 40.3 bits (93),  Expect = 0.002, Method: Composition-based stats.
 Identities = 20/75 (27%), Positives = 27/75 (36%), Gaps = 11/75 (15%)

Query  53    QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF--  110
              AI+  P   +   ++ G S C  C    DH      C   G +VQIP    ++      
Sbjct  4467  IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TCQYAGYFVQIPREHVSNIFNLTD  4521

Query  111   ---TLKNT-VCTVCG  121
                 L N   CT C 
Sbjct  4522  TPPCLHNKFTCTTCQ  4536


>sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream 
virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 
GN=rep PE=1 SV=1
Length=6872

 Score = 40.3 bits (93),  Expect = 0.003, Method: Composition-based stats.
 Identities = 20/75 (27%), Positives = 27/75 (36%), Gaps = 11/75 (15%)

Query  53    QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF--  110
              AI+  P   +   ++ G S C  C    DH      C   G +VQIP    ++      
Sbjct  4467  IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TCQYAGYFVQIPREHVSNIFNLTD  4521

Query  111   ---TLKNT-VCTVCG  121
                 L N   CT C 
Sbjct  4522  TPPCLHNKFTCTTCQ  4536


>sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing 
protein 1 OS=Homo sapiens OX=9606 GN=SPRED1 PE=1 SV=2
Length=444

 Score = 34.9 bits (79),  Expect = 0.17, Method: Composition-based stats.
 Identities = 16/77 (21%), Positives = 31/77 (40%), Gaps = 10/77 (13%)

Query  56   TVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNT  115
            ++  + +  ++  G  S C+YC+   +H       +++GK    P     DP+   +   
Sbjct  317  SLKIKKSKRRKEDGERSRCVYCQERFNHEE-----NVRGKCQDAP-----DPIKRCIYQV  366

Query  116  VCTVCGMWKGYGCSCDQ  132
             C +C     Y C  D 
Sbjct  367  SCMLCAESMLYHCMSDS  383


>sp|Q924S8|SPRE1_MOUSE Sprouty-related, EVH1 domain-containing 
protein 1 OS=Mus musculus OX=10090 GN=Spred1 PE=1 SV=1
Length=444

 Score = 33.8 bits (76),  Expect = 0.33, Method: Composition-based stats.
 Identities = 17/64 (27%), Positives = 24/64 (38%), Gaps = 10/64 (16%)

Query  69   GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGC  128
            G  S C+YC+   +H       + +GK    P     DPV   +    C +C     Y C
Sbjct  330  GERSRCVYCQERFNHEE-----NARGKCQDAP-----DPVKRCIYQVSCMLCAESMLYHC  379

Query  129  SCDQ  132
              D 
Sbjct  380  MSDS  383


>sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus OX=10116 GN=Cpne9 
PE=2 SV=1
Length=553

 Score = 33.0 bits (74),  Expect = 0.71, Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  9    ANSTVLSFCAFAVDAAKAYKDYLASGGQ  36
             NS  ++  +F+VD+   + DY+  G Q
Sbjct  270  TNSGTVTLLSFSVDSEFTFVDYIKGGTQ  297


>sp|Q1RLL3|CPNE9_MOUSE Copine-9 OS=Mus musculus OX=10090 GN=Cpne9 
PE=1 SV=1
Length=553

 Score = 33.0 bits (74),  Expect = 0.71, Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  9    ANSTVLSFCAFAVDAAKAYKDYLASGGQ  36
             NS  ++  +F+VD+   + DY+  G Q
Sbjct  270  TNSGTVTLLSFSVDSEFTFVDYIKGGTQ  297


>sp|Q66JG9|SPRE1_XENTR Sprouty-related, EVH1 domain-containing 
protein 1 OS=Xenopus tropicalis OX=8364 GN=spred1 PE=1 SV=1
Length=406

 Score = 33.0 bits (74),  Expect = 0.74, Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (38%), Gaps = 10/64 (16%)

Query  69   GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGC  128
            G  S C+YC+   +H       + +GK    P     DP+   +    C +C     Y C
Sbjct  292  GEHSSCVYCQERFNHEE-----NGRGKCQDAP-----DPIQRCIYQVSCMLCAESMLYHC  341

Query  129  SCDQ  132
              D 
Sbjct  342  MSDS  345


>sp|Q8IYJ1|CPNE9_HUMAN Copine-9 OS=Homo sapiens OX=9606 GN=CPNE9 
PE=1 SV=3
Length=553

 Score = 32.6 bits (73),  Expect = 0.93, Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  9    ANSTVLSFCAFAVDAAKAYKDYLASGGQ  36
             NS  ++  +F+VD+   + DY+  G Q
Sbjct  270  VNSGTVTLLSFSVDSEFTFVDYIKGGTQ  297


>sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 
PE=1 SV=1
Length=593

 Score = 32.6 bits (73),  Expect = 0.95, Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  9    ANSTVLSFCAFAVDAAKAYKDYLASGGQ  36
             NS  ++  +FAV++   + DY+  G Q
Sbjct  299  VNSGTVTLLSFAVESESTFLDYIKGGTQ  326


>sp|Q58087|Y674_METJA Uncharacterized protein MJ0674 OS=Methanocaldococcus 
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 
/ JCM 10045 / NBRC 100440) OX=243232 GN=MJ0674 PE=4 SV=1
Length=338

 Score = 31.5 bits (70),  Expect = 2.2, Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 18/64 (28%)

Query  74   CLYC--RCHIDHPNPKGFCDLKGKY------------VQIPTTCANDPVGFTLKNTVCTV  119
            C +C  RC+++    +GFC +K  Y            V +P+      + F   N  C  
Sbjct  80   CHFCEHRCYVNRETERGFCRIKESYYSTEFLHLGEERVLVPSHT----IFFCGCNFKCVF  135

Query  120  CGMW  123
            C  W
Sbjct  136  CQNW  139


>sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 
PE=1 SV=2
Length=593

 Score = 31.5 bits (70),  Expect = 2.5, Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%)

Query  9    ANSTVLSFCAFAVDAAKAYKDYLASGGQ  36
             NS  ++  +FAV++   + DY+  G Q
Sbjct  299  VNSGTVTLLSFAVESECTFLDYIKGGTQ  326


>sp|Q28U74|SUCC_JANSC Succinate--CoA ligase [ADP-forming] subunit 
beta OS=Jannaschia sp. (strain CCS1) OX=290400 GN=sucC PE=3 
SV=1
Length=397

 Score = 30.3 bits (67),  Expect = 6.3, Method: Composition-based stats.
 Identities = 17/52 (33%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query  2    GNATEVPANSTVLSFCAFAVDAAKAYKDY--------LASGGQPITNCVKML  45
            G   E  A ST     +F+VD A  Y+ Y        L   GQ +  CVK++
Sbjct  140  GMDIEEVAASTPEKILSFSVDPATGYQPYHGRRVAFSLGLEGQQVKQCVKLM  191


>sp|Q6SWC8|UL01_HCMVM Glycoprotein UL1 OS=Human cytomegalovirus 
(strain Merlin) OX=295027 GN=UL1 PE=3 SV=1
Length=218

 Score = 29.5 bits (65),  Expect = 8.6, Method: Composition-based stats.
 Identities = 12/38 (32%), Positives = 18/38 (47%), Gaps = 1/38 (3%)

Query  92   LKGKYVQIPTTCAN-DPVGFTLKNTVCTVCGMWKGYGC  128
            L+ ++VQIP T A  D + F + +  C     W    C
Sbjct  41   LQSEHVQIPITVAEGDTICFNVSDNPCNFSSYWNHNNC  78



Lambda      K        H        a         alpha
   0.317    0.143    0.487    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0439    0.140     1.90     42.6     43.6 

Effective search space used: 5150839400

Search has CONVERGED!


  Database: uniprot_sprot.fasta
    Posted date:  Feb 9, 2024  7:20 PM
  Number of letters in database: 206,533,160
  Number of sequences in database:  570,830



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40