PSIBLAST 2.11.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Stephen F. Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: uniprot_sprot.fasta 570,830 sequences; 206,533,160 total letters Results from round 1 Query= YP_009725306.1 nsp10 [Severe acute respiratory syndrome coronavirus 2] Length=139 Score E Sequences producing significant alignments: (Bits) Value sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 302 6e-95 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 301 2e-94 sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 298 2e-93 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 298 2e-93 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 297 4e-93 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 297 5e-93 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 296 6e-93 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 296 1e-92 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 292 2e-91 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 291 4e-91 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 204 2e-60 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 203 3e-60 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 179 1e-51 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 178 1e-51 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 172 2e-49 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 172 2e-49 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 171 3e-49 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 171 3e-49 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 168 4e-48 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 167 7e-48 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 167 1e-47 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 167 1e-47 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 167 1e-47 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 166 2e-47 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 166 2e-47 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 166 2e-47 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 163 3e-46 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 163 3e-46 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 163 3e-46 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 163 3e-46 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 161 9e-46 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 161 1e-45 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 161 1e-45 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 161 1e-45 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 161 1e-45 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 161 2e-45 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 161 2e-45 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 161 2e-45 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 160 2e-45 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 160 2e-45 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 160 2e-45 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 160 2e-45 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 159 1e-44 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 157 3e-44 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 157 4e-44 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 157 4e-44 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 157 4e-44 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 157 5e-44 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 157 5e-44 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 156 5e-44 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 156 5e-44 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 155 2e-43 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 154 2e-43 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 151 4e-42 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 151 5e-42 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 150 7e-42 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 150 1e-41 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 150 1e-41 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 148 5e-41 sp|Q5H390|TRMD_XANOR tRNA (guanine-N(1)-)-methyltransferase OS=Xa... 31.2 2.9 sp|B2SJV1|TRMD_XANOP tRNA (guanine-N(1)-)-methyltransferase OS=Xa... 31.2 2.9 sp|Q2P651|TRMD_XANOM tRNA (guanine-N(1)-)-methyltransferase OS=Xa... 31.2 2.9 sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis th... 30.4 5.7 sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate p... 30.0 7.9 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 302 bits (774), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC Sbjct 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPMLQ Sbjct 4374 GMWKGYGCSCDQLREPMLQ 4392 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 301 bits (771), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC Sbjct 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPMLQ Sbjct 4374 GMWKGYGCSCDQLREPMLQ 4392 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 298 bits (763), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4229 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4288 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4289 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4348 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4349 GMWKGYGCSCDQLREPMMQ 4367 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 298 bits (762), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4225 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4284 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4285 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4344 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4345 GMWKGYGCSCDQLREPMMQ 4363 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 297 bits (760), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4229 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4288 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4289 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4348 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4349 GMWKGYGCSCDQLREPMMQ 4367 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 297 bits (760), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4225 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4284 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4285 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4344 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4345 GMWKGYGCSCDQLREPMMQ 4363 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 296 bits (759), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREP++Q Sbjct 4351 GMWKGYGCSCDQLREPLMQ 4369 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 296 bits (757), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREP++Q Sbjct 4351 GMWKGYGCSCDQLREPLMQ 4369 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 292 bits (748), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4237 AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4296 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC Sbjct 4297 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC 4356 Query 121 GMWKGYGCSCDQLREPMLQ 139 G WKGYGCSCDQLREPM+Q Sbjct 4357 GTWKGYGCSCDQLREPMMQ 4375 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 291 bits (746), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4237 AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4296 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC Sbjct 4297 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC 4356 Query 121 GMWKGYGCSCDQLREPMLQ 139 G WKGYGCSCDQLREPM+Q Sbjct 4357 GTWKGYGCSCDQLREPMMQ 4375 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 204 bits (518), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+ Sbjct 4095 AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD 4154 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4155 ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC 4214 Query 121 GMWKGYGCSCDQLREPMLQ 139 MW+GYGC C LRE LQ Sbjct 4215 NMWQGYGCPCSSLREINLQ 4233 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 203 bits (516), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+ Sbjct 4095 AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD 4154 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4155 ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC 4214 Query 121 GMWKGYGCSCDQLREPMLQ 139 MW+GYGC C LRE LQ Sbjct 4215 NMWQGYGCPCSSLREINLQ 4233 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 179 bits (453), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE Sbjct 4238 AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE 4297 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 + DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4298 STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC 4357 Query 121 GMWKGYGCSCDQLREPML 138 W GYGC+CD LR+ L Sbjct 4358 QYWIGYGCNCDSLRQAAL 4375 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 178 bits (452), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE Sbjct 4238 AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE 4297 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 + DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4298 STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC 4357 Query 121 GMWKGYGCSCDQLREPML 138 W GYGC+CD LR+ L Sbjct 4358 QYWIGYGCNCDSLRQAAL 4375 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 172 bits (435), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4282 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4341 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4342 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHV-RDPVGFLLKNVPCNVC 4400 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4401 QYWVGYGCNCDALR 4414 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 172 bits (435), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4289 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4348 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4349 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAHV-RDPVGFLLKNVPCNVC 4407 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4408 QYWVGYGCNCDALR 4421 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 171 bits (434), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4282 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4341 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4342 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4400 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4401 QYWVGYGCNCDALR 4414 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 171 bits (434), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4289 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4348 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4349 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4407 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4408 QYWVGYGCNCDALR 4421 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 168 bits (426), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE NS+VLS F+VD KAY D++ +GG P+TNCVKML TGTG A++V PE Sbjct 4329 AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE 4388 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN DQ+++GGAS CLYCR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC Sbjct 4389 ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC 4447 Query 121 GMWKGYGCSCDQLR 134 W G+GC+CD LR Sbjct 4448 QFWIGHGCNCDALR 4461 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 167 bits (424), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE NS+VLS F+VD KAY D++ +GG P+TNCVKML TGTG A++V PE Sbjct 4329 AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE 4388 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN DQ+++GGAS CLYCR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC Sbjct 4389 ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC 4447 Query 121 GMWKGYGCSCDQLR 134 W G+GC+CD LR Sbjct 4448 QFWIGHGCNCDALR 4461 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 167 bits (423), Expect = 1e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4291 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4350 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4351 ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4409 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4410 GFWRDGSCSC 4419 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 167 bits (422), Expect = 1e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4271 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4330 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4331 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4389 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4390 GFWRDGSCSC 4399 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 167 bits (422), Expect = 1e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4321 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4380 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4381 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4439 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4440 GFWRDGSCSC 4449 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 166 bits (421), Expect = 2e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4291 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4350 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4351 ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4409 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4410 GFWRDGSCSC 4419 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 166 bits (420), Expect = 2e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4271 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4330 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4331 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4389 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4390 GFWRDGSCSC 4399 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 166 bits (420), Expect = 2e-47, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4321 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4380 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4381 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4439 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4440 GFWRDGSCSC 4449 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 163 bits (412), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4324 AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE 4383 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4384 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4442 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4443 GFWRDGSCSC 4452 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 163 bits (412), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4318 AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE 4377 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4378 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4436 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4437 GFWRDGSCSC 4446 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 163 bits (412), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4318 AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE 4377 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4378 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4436 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4437 GFWRDGSCSC 4446 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 163 bits (412), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4324 AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE 4383 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4384 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4442 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4443 GFWRDGSCSC 4452 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 161 bits (408), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 161 bits (408), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 161 bits (408), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 161 bits (408), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 161 bits (407), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4266 AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE 4325 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4326 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4384 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4385 GFWRDGSCSC 4394 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 161 bits (407), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4266 AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE 4325 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4326 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4384 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4385 GFWRDGSCSC 4394 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 161 bits (407), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 161 bits (407), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 160 bits (406), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 160 bits (406), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 160 bits (406), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 160 bits (406), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 159 bits (401), Expect = 1e-44, Method: Composition-based stats. Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + + Sbjct 3909 AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD 3968 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN +Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VC Sbjct 3969 ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC 4027 Query 121 GMWKGYGCSCDQ 132 G W G+GC+CD+ Sbjct 4028 GCWLGHGCACDR 4039 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 157 bits (397), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3788 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3847 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3848 TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3906 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3907 TVCQCWIGYGCQCDSLRQP 3925 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 157 bits (397), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT E Sbjct 3977 AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE 4036 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC VC Sbjct 4037 ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC 4095 Query 121 GMWKGYGCSCDQ 132 G W+ GC+CD+ Sbjct 4096 GCWQANGCTCDR 4107 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 157 bits (396), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 157 bits (396), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 157 bits (396), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3788 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3847 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3848 TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3906 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3907 TVCQCWIGYGCQCDSLRQP 3925 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 157 bits (396), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT E Sbjct 3977 AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE 4036 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC VC Sbjct 4037 ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC 4095 Query 121 GMWKGYGCSCDQ 132 G W+ GC+CD+ Sbjct 4096 GCWQANGCTCDR 4107 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 156 bits (395), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 156 bits (395), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 155 bits (392), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML +G GQA+T E Sbjct 3966 AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE 4025 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L+N VC VC Sbjct 4026 ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC 4084 Query 121 GMWKGYGCSCDQ 132 G W GC+CD+ Sbjct 4085 GCWLSNGCTCDR 4096 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 154 bits (390), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML +G GQA+T E Sbjct 3966 AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE 4025 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L+N VC VC Sbjct 4026 ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC 4084 Query 121 GMWKGYGCSCDQ 132 G W GC+CD+ Sbjct 4085 GCWLSNGCTCDR 4096 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 151 bits (381), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T + Sbjct 3934 AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID 3993 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VC Sbjct 3994 SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC 4052 Query 121 GMWKGYGCSCDQ 132 G W +GC+CD+ Sbjct 4053 GCWLNHGCTCDR 4064 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 151 bits (381), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T + Sbjct 3934 AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID 3993 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VC Sbjct 3994 SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC 4052 Query 121 GMWKGYGCSCDQ 132 G W +GC+CD+ Sbjct 4053 GCWLNHGCTCDR 4064 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 150 bits (380), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 72/132 (55%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS +L+ CAFA D AKAY D + G QP+TNCVKML G G AIT E Sbjct 3889 AGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVE 3948 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+S+GGAS C+YCRCH++HP G C KGK+VQ+PT DP+ F ++N VC VC Sbjct 3949 SNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVC 4007 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 4008 GCWLTNGCMCDR 4019 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 150 bits (379), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T E Sbjct 3864 AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE 3923 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC VC Sbjct 3924 ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC 3982 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 3983 GCWLNNGCMCDR 3994 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 150 bits (379), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T E Sbjct 3864 AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE 3923 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC VC Sbjct 3924 ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC 3982 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 3983 GCWLNNGCMCDR 3994 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 148 bits (374), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + + Sbjct 3909 AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD 3968 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN +Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VC Sbjct 3969 ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC 4027 Query 121 GMWKGYGCSCDQ 132 G W G+GC+CD+ Sbjct 4028 GCWLGHGCACDR 4039 >sp|Q5H390|TRMD_XANOR tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331 GN=trmD PE=3 SV=2 Length=259 Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query 15 SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC 74 F A AVD + DY+ SGG+ V + T G + + Q+SF G Sbjct 121 RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL 177 Query 75 LYCRCHIDHPNPKGFCDL 92 L C H HP+ + D+ Sbjct 178 LDC-PHYSHPSSHAWGDV 194 >sp|B2SJV1|TRMD_XANOP tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) OX=360094 GN=trmD PE=3 SV=1 Length=259 Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query 15 SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC 74 F A AVD + DY+ SGG+ V + T G + + Q+SF G Sbjct 121 RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL 177 Query 75 LYCRCHIDHPNPKGFCDL 92 L C H HP+ + D+ Sbjct 178 LDC-PHYSHPSSHAWGDV 194 >sp|Q2P651|TRMD_XANOM tRNA (guanine-N(1)-)-methyltransferase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=trmD PE=3 SV=1 Length=259 Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query 15 SFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCC 74 F A AVD + DY+ SGG+ V + T G + + Q+SF G Sbjct 121 RFLAQAVDMEISIGDYVLSGGELGAAVVVDVVTRLQEG---VLNDAESAAQDSFEGPQGL 177 Query 75 LYCRCHIDHPNPKGFCDL 92 L C H HP+ + D+ Sbjct 178 LDC-PHYSHPSSHAWGDV 194 >sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana OX=3702 GN=TT1 PE=1 SV=1 Length=303 Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/59 (29%), Positives = 24/59 (41%), Gaps = 1/59 (2%) Query 73 CCLY-CRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGCSC 130 CC+ CR HIDHP K D + + P L + V G W+ + +C Sbjct 193 CCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNC 251 >sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus OX=10090 GN=Hspg2 PE=1 SV=1 Length=3707 Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/48 (38%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Query 31 LASGGQPITNCVKMLCTHTGTGQAITVTPEANMDQESFGGASCCLYCR 78 L+S GQ + ML H G+G + V+PE E G + LYCR Sbjct 1935 LSSAGQHVARA--MLQVHGGSGPRVQVSPERTQVHE---GRTVRLYCR 1977 Lambda K H a alpha 0.322 0.135 0.454 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 5150839400 Results from round 2 Query= YP_009725306.1 nsp10 [Severe acute respiratory syndrome coronavirus 2] Length=139 Score E Sequences producing significant alignments: (Bits) Value Sequences used in model and found again: sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R... 260 3e-80 sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus... 260 4e-80 sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus... 259 6e-80 sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H... 259 7e-80 sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi... 258 1e-79 sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res... 258 1e-79 sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp... 257 3e-79 sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2... 257 4e-79 sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re... 257 4e-79 sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus... 257 4e-79 sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respi... 250 1e-76 sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East res... 249 2e-76 sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H... 246 2e-75 sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus... 245 5e-75 sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmiss... 243 3e-74 sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmi... 241 1e-73 sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavir... 241 2e-73 sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus H... 240 3e-73 sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus... 239 5e-73 sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 5... 239 5e-73 sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus... 238 1e-72 sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic ... 237 2e-72 sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus... 237 2e-72 sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemi... 237 5e-72 sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavir... 236 6e-72 sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus... 236 7e-72 sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavir... 235 2e-71 sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronaviru... 234 3e-71 sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronaviru... 234 3e-71 sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavi... 234 5e-71 sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavi... 234 5e-71 sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus... 232 1e-70 sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus H... 232 2e-70 sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus... 232 2e-70 sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus... 232 2e-70 sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus... 232 2e-70 sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavir... 232 2e-70 sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavir... 232 2e-70 sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 1... 232 2e-70 sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavir... 232 2e-70 sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus... 232 3e-70 sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus... 232 3e-70 sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus... 232 3e-70 sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavi... 232 3e-70 sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavi... 231 3e-70 sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavir... 231 4e-70 sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus... 231 4e-70 sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavir... 231 4e-70 sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavir... 231 4e-70 sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronaviru... 230 8e-70 sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronaviru... 230 1e-69 sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavir... 229 1e-69 sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus... 229 3e-69 sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious b... 227 1e-68 sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious ... 227 1e-68 sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious b... 227 1e-68 sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectiou... 226 3e-68 sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious... 226 3e-68 sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious... 225 3e-68 Sequences not found previously or not previously below threshold: sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus... 40.3 0.002 sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream vir... 40.3 0.003 sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing pro... 34.9 0.17 sp|Q924S8|SPRE1_MOUSE Sprouty-related, EVH1 domain-containing pro... 33.8 0.33 sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus OX=10116 GN=Cpn... 33.0 0.71 sp|Q1RLL3|CPNE9_MOUSE Copine-9 OS=Mus musculus OX=10090 GN=Cpne9 ... 33.0 0.71 sp|Q66JG9|SPRE1_XENTR Sprouty-related, EVH1 domain-containing pro... 33.0 0.74 sp|Q8IYJ1|CPNE9_HUMAN Copine-9 OS=Homo sapiens OX=9606 GN=CPNE9 P... 32.6 0.93 sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 ... 32.6 0.95 sp|Q58087|Y674_METJA Uncharacterized protein MJ0674 OS=Methanocal... 31.5 2.2 sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 P... 31.5 2.5 sp|Q28U74|SUCC_JANSC Succinate--CoA ligase [ADP-forming] subunit ... 30.3 6.3 sp|Q6SWC8|UL01_HCMVM Glycoprotein UL1 OS=Human cytomegalovirus (s... 29.5 8.6 >sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus Rp3/2004 OX=349344 GN=1a PE=3 SV=1 Length=4380 Score = 260 bits (665), Expect = 3e-80, Method: Composition-based stats. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4229 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4288 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4289 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4348 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4349 GMWKGYGCSCDQLREPMMQ 4367 >sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus Rp3/2004 OX=349344 GN=rep PE=3 SV=1 Length=7071 Score = 260 bits (664), Expect = 4e-80, Method: Composition-based stats. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4229 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4288 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4289 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4348 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4349 GMWKGYGCSCDQLREPMMQ 4367 >sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus HKU3 OX=442736 GN=rep PE=3 SV=1 Length=7067 Score = 259 bits (663), Expect = 6e-80, Method: Composition-based stats. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4225 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4284 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4285 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4344 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4345 GMWKGYGCSCDQLREPMMQ 4363 >sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus HKU3 OX=442736 GN=1a PE=3 SV=1 Length=4376 Score = 259 bits (662), Expect = 7e-80, Method: Composition-based stats. Identities = 136/139 (98%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4225 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4284 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4285 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4344 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPM+Q Sbjct 4345 GMWKGYGCSCDQLREPMMQ 4363 >sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=1a PE=1 SV=1 Length=4382 Score = 258 bits (660), Expect = 1e-79, Method: Composition-based stats. Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREP++Q Sbjct 4351 GMWKGYGCSCDQLREPLMQ 4369 >sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1 Length=7073 Score = 258 bits (660), Expect = 1e-79, Method: Composition-based stats. Identities = 135/139 (97%), Positives = 138/139 (99%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4231 AGNATEVPANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4290 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTL+NTVCTVC Sbjct 4291 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVCTVC 4350 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREP++Q Sbjct 4351 GMWKGYGCSCDQLREPLMQ 4369 >sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1 Length=4405 Score = 257 bits (657), Expect = 3e-79, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC Sbjct 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPMLQ Sbjct 4374 GMWKGYGCSCDQLREPMLQ 4392 >sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 279/2005 OX=389167 GN=1a PE=3 SV=1 Length=4388 Score = 257 bits (657), Expect = 4e-79, Method: Composition-based stats. Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4237 AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4296 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC Sbjct 4297 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC 4356 Query 121 GMWKGYGCSCDQLREPMLQ 139 G WKGYGCSCDQLREPM+Q Sbjct 4357 GTWKGYGCSCDQLREPMMQ 4375 >sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 SV=1 Length=7096 Score = 257 bits (656), Expect = 4e-79, Method: Composition-based stats. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4254 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4313 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC Sbjct 4314 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 4373 Query 121 GMWKGYGCSCDQLREPMLQ 139 GMWKGYGCSCDQLREPMLQ Sbjct 4374 GMWKGYGCSCDQLREPMLQ 4392 >sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 279/2005 OX=389167 GN=rep PE=3 SV=1 Length=7079 Score = 257 bits (656), Expect = 4e-79, Method: Composition-based stats. Identities = 134/139 (96%), Positives = 135/139 (97%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AGNATEVPANS VLSFCAFAVD AKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE Sbjct 4237 AGNATEVPANSAVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 4296 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIP TCANDPVGFTLKNTVCTVC Sbjct 4297 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPATCANDPVGFTLKNTVCTVC 4356 Query 121 GMWKGYGCSCDQLREPMLQ 139 G WKGYGCSCDQLREPM+Q Sbjct 4357 GTWKGYGCSCDQLREPMMQ 4375 >sp|K9N638|R1A_MERS1 Replicase polyprotein 1a OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=1a PE=1 SV=1 Length=4391 Score = 250 bits (638), Expect = 1e-76, Method: Composition-based stats. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE Sbjct 4238 AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE 4297 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 + DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4298 STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC 4357 Query 121 GMWKGYGCSCDQLREPML 138 W GYGC+CD LR+ L Sbjct 4358 QYWIGYGCNCDSLRQAAL 4375 >sp|K9N7C7|R1AB_MERS1 Replicase polyprotein 1ab OS=Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012) OX=1263720 GN=rep PE=1 SV=1 Length=7078 Score = 249 bits (636), Expect = 2e-76, Method: Composition-based stats. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 0/138 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE +NS+VLS F VD KAY D++ +GG P+TNCVKML TGTG AI+V PE Sbjct 4238 AGSNTEFASNSSVLSLVNFTVDPQKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAISVKPE 4297 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 + DQE++GGAS CLYCR HI+HP+ G C KGK+VQIP C DPVGF L NT C VC Sbjct 4298 STADQETYGGASVCLYCRAHIEHPDVSGVCKYKGKFVQIPAQCVRDPVGFCLSNTPCNVC 4357 Query 121 GMWKGYGCSCDQLREPML 138 W GYGC+CD LR+ L Sbjct 4358 QYWIGYGCNCDSLRQAAL 4375 >sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus HKU9 OX=694006 GN=1a PE=3 SV=1 Length=4248 Score = 246 bits (629), Expect = 2e-75, Method: Composition-based stats. Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+ Sbjct 4095 AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD 4154 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4155 ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC 4214 Query 121 GMWKGYGCSCDQLREPMLQ 139 MW+GYGC C LRE LQ Sbjct 4215 NMWQGYGCPCSSLREINLQ 4233 >sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus HKU9 OX=694006 GN=rep PE=1 SV=1 Length=6930 Score = 245 bits (626), Expect = 5e-75, Method: Composition-based stats. Identities = 91/139 (65%), Positives = 106/139 (76%), Gaps = 0/139 (0%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ATEV +NS++LS C+F+VD YKDYL +GG PI NCVKML HTGTG AIT P+ Sbjct 4095 AGSATEVASNSSILSLCSFSVDPEATYKDYLDNGGSPIGNCVKMLTPHTGTGLAITAKPD 4154 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN+DQESFGGASCCLYCRCHI+HP G C KGK+VQIP NDP+GF ++N VC VC Sbjct 4155 ANIDQESFGGASCCLYCRCHIEHPGASGVCKYKGKFVQIPLVGVNDPIGFCIRNVVCAVC 4214 Query 121 GMWKGYGCSCDQLREPMLQ 139 MW+GYGC C LRE LQ Sbjct 4215 NMWQGYGCPCSSLREINLQ 4233 >sp|P0C6V2|R1A_CVPPU Replicase polyprotein 1a OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=1a PE=1 SV=1 Length=4017 Score = 243 bits (620), Expect = 3e-74, Method: Composition-based stats. Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T E Sbjct 3864 AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE 3923 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC VC Sbjct 3924 ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC 3982 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 3983 GCWLNNGCMCDR 3994 >sp|P0C6Y5|R1AB_CVPPU Replicase polyprotein 1ab OS=Porcine transmissible gastroenteritis coronavirus (strain Purdue) OX=11151 GN=rep PE=1 SV=1 Length=6684 Score = 241 bits (616), Expect = 1e-73, Method: Composition-based stats. Identities = 71/132 (54%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS++L+ CAF+ D AKAY D + G QP+ NCVKML G G A+T E Sbjct 3864 AGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVE 3923 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN Q+S+GGAS C+YCRCH++HP G C KGK+VQIPT DP+ F ++N VC VC Sbjct 3924 ANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTG-TQDPIRFCIENEVCVVC 3982 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 3983 GCWLNNGCMCDR 3994 >sp|Q98VG9|R1AB_FIPV Replicase polyprotein 1ab OS=Feline coronavirus (strain FIPV WSU-79/1146) OX=33734 GN=rep PE=1 SV=2 Length=6709 Score = 241 bits (615), Expect = 2e-73, Method: Composition-based stats. Identities = 72/132 (55%), Positives = 89/132 (67%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE P+NS +L+ CAFA D AKAY D + G QP+TNCVKML G G AIT E Sbjct 3889 AGKPTEHPSNSGLLTLCAFAPDPAKAYVDAVKRGMQPVTNCVKMLSNGAGNGMAITNGVE 3948 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+S+GGAS C+YCRCH++HP G C KGK+VQ+PT DP+ F ++N VC VC Sbjct 3949 SNTQQDSYGGASVCIYCRCHVEHPAIDGLCRFKGKFVQVPTG-TQDPIRFCIENEVCVVC 4007 Query 121 GMWKGYGCSCDQ 132 G W GC CD+ Sbjct 4008 GCWLTNGCMCDR 4019 >sp|P0C6T5|R1A_BCHK5 Replicase polyprotein 1a OS=Bat coronavirus HKU5 OX=694008 GN=1a PE=3 SV=1 Length=4481 Score = 240 bits (613), Expect = 3e-73, Method: Composition-based stats. Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE NS+VLS F+VD KAY D++ +GG P+TNCVKML TGTG A++V PE Sbjct 4329 AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE 4388 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN DQ+++GGAS CLYCR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC Sbjct 4389 ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC 4447 Query 121 GMWKGYGCSCDQLR 134 W G+GC+CD LR Sbjct 4448 QFWIGHGCNCDALR 4461 >sp|P0C6W4|R1AB_BCHK5 Replicase polyprotein 1ab OS=Bat coronavirus HKU5 OX=694008 GN=rep PE=3 SV=1 Length=7182 Score = 239 bits (611), Expect = 5e-73, Method: Composition-based stats. Identities = 78/134 (58%), Positives = 97/134 (72%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG+ TE NS+VLS F+VD KAY D++ +GG P+TNCVKML TGTG A++V PE Sbjct 4329 AGSNTEFAINSSVLSAVTFSVDPGKAYLDFVNAGGAPLTNCVKMLTPKTGTGIAVSVKPE 4388 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN DQ+++GGAS CLYCR HI+HP+ G C KGK+VQ+P DPVGF L+NT C VC Sbjct 4389 ANADQDTYGGASVCLYCRAHIEHPDVTGVCKFKGKFVQVPLHI-RDPVGFCLQNTPCNVC 4447 Query 121 GMWKGYGCSCDQLR 134 W G+GC+CD LR Sbjct 4448 QFWIGHGCNCDALR 4461 >sp|P0C6F6|R1A_BC512 Replicase polyprotein 1a OS=Bat coronavirus 512/2005 OX=693999 GN=1a PE=3 SV=1 Length=4128 Score = 239 bits (611), Expect = 5e-73, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT E Sbjct 3977 AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE 4036 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC VC Sbjct 4037 ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC 4095 Query 121 GMWKGYGCSCDQ 132 G W+ GC+CD+ Sbjct 4096 GCWQANGCTCDR 4107 >sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronavirus 512/2005 OX=693999 GN=rep PE=3 SV=1 Length=6793 Score = 238 bits (608), Expect = 1e-72, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 94/132 (71%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD K Y D + SG +P+ NCVKML +G GQAIT E Sbjct 3977 AGKQTEQATNSSLLTLCAFAVDPPKTYLDAVKSGHRPVGNCVKMLANGSGNGQAITNGVE 4036 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC L+GKYVQ+P DP+ F L+NTVC VC Sbjct 4037 ASTNQDSYGGASVCLYCRAHVEHPDMDGFCKLRGKYVQVPLGTL-DPIRFVLENTVCKVC 4095 Query 121 GMWKGYGCSCDQ 132 G W+ GC+CD+ Sbjct 4096 GCWQANGCTCDR 4107 >sp|P0C6V6|R1A_PEDV7 Replicase polyprotein 1a OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=1a PE=1 SV=1 Length=4117 Score = 237 bits (606), Expect = 2e-72, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML +G GQA+T E Sbjct 3966 AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE 4025 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L+N VC VC Sbjct 4026 ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC 4084 Query 121 GMWKGYGCSCDQ 132 G W GC+CD+ Sbjct 4085 GCWLSNGCTCDR 4096 >sp|P0C6U2|R1A_CVH22 Replicase polyprotein 1a OS=Human coronavirus 229E OX=11137 GN=1a PE=1 SV=1 Length=4085 Score = 237 bits (606), Expect = 2e-72, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T + Sbjct 3934 AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID 3993 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VC Sbjct 3994 SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC 4052 Query 121 GMWKGYGCSCDQ 132 G W +GC+CD+ Sbjct 4053 GCWLNHGCTCDR 4064 >sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic diarrhea virus (strain CV777) OX=229032 GN=rep PE=1 SV=1 Length=6781 Score = 237 bits (604), Expect = 5e-72, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE NS++L+ CAFAVD AK Y D + SG +P+ NCVKML +G GQA+T E Sbjct 3966 AGKQTEQAINSSLLTLCAFAVDPAKTYIDAVKSGHKPVGNCVKMLANGSGNGQAVTNGVE 4025 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A+ +Q+S+GGAS CLYCR H++HP+ GFC LKGKYVQ+P DP+ F L+N VC VC Sbjct 4026 ASTNQDSYGGASVCLYCRAHVEHPSMDGFCRLKGKYVQVPLGTV-DPIRFVLENDVCKVC 4084 Query 121 GMWKGYGCSCDQ 132 G W GC+CD+ Sbjct 4085 GCWLSNGCTCDR 4096 >sp|P0C6X1|R1AB_CVH22 Replicase polyprotein 1ab OS=Human coronavirus 229E OX=11137 GN=rep PE=1 SV=1 Length=6758 Score = 236 bits (603), Expect = 6e-72, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NS +L+ C+FAVD A AY D + G +P+ NCVKML +G+GQAIT T + Sbjct 3934 AGKQTEFVSNSHLLTHCSFAVDPAAAYLDAVKQGAKPVGNCVKMLTNGSGSGQAITCTID 3993 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 +N Q+++GGAS C+YCR H+ HP GFC KGK+VQ+P NDP+ F L+NTVC VC Sbjct 3994 SNTTQDTYGGASVCIYCRAHVAHPTMDGFCQYKGKWVQVPIG-TNDPIRFCLENTVCKVC 4052 Query 121 GMWKGYGCSCDQ 132 G W +GC+CD+ Sbjct 4053 GCWLNHGCTCDR 4064 >sp|P0C6U6|R1A_CVHNL Replicase polyprotein 1a OS=Human coronavirus NL63 OX=277944 GN=1a PE=1 SV=1 Length=4060 Score = 236 bits (603), Expect = 7e-72, Method: Composition-based stats. Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + + Sbjct 3909 AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD 3968 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN +Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VC Sbjct 3969 ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC 4027 Query 121 GMWKGYGCSCDQ 132 G W G+GC+CD+ Sbjct 4028 GCWLGHGCACDR 4039 >sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus NL63 OX=277944 GN=rep PE=1 SV=1 Length=6729 Score = 235 bits (600), Expect = 2e-71, Method: Composition-based stats. Identities = 68/132 (52%), Positives = 92/132 (70%), Gaps = 1/132 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE+ NS +L+ CAF+VD A Y + + G +P++NC+KML G GQAIT + + Sbjct 3909 AGKQTELAVNSGLLTACAFSVDPATTYLEAVKHGAKPVSNCIKMLSNGAGNGQAITTSVD 3968 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 AN +Q+S+GGAS CLYCR H+ HP+ G+C KGK VQ+P C DP+ F L+N VC VC Sbjct 3969 ANTNQDSYGGASICLYCRAHVPHPSMDGYCKFKGKCVQVPIGCL-DPIRFCLENNVCNVC 4027 Query 121 GMWKGYGCSCDQ 132 G W G+GC+CD+ Sbjct 4028 GCWLGHGCACDR 4039 >sp|P0C6T9|R1A_CVBLU Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=1a PE=3 SV=1 Length=4383 Score = 234 bits (598), Expect = 3e-71, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6T8|R1A_CVBEN Replicase polyprotein 1a OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=1a PE=3 SV=1 Length=4383 Score = 234 bits (598), Expect = 3e-71, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6W8|R1AB_CVBLU Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-LUN) OX=233264 GN=rep PE=3 SV=1 Length=7094 Score = 234 bits (597), Expect = 5e-71, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6W7|R1AB_CVBEN Replicase polyprotein 1ab OS=Bovine coronavirus (strain 98TXSF-110-ENT) OX=233262 GN=rep PE=3 SV=1 Length=7094 Score = 234 bits (597), Expect = 5e-71, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTNQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U7|R1A_CVHOC Replicase polyprotein 1a OS=Human coronavirus OC43 OX=31631 GN=1a PE=1 SV=1 Length=4383 Score = 232 bits (593), Expect = 1e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4 OX=694007 GN=1a PE=1 SV=1 Length=4434 Score = 232 bits (593), Expect = 2e-70, Method: Composition-based stats. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4282 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4341 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4342 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4400 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4401 QYWVGYGCNCDALR 4414 >sp|P0C6U0|R1A_CVBM Replicase polyprotein 1a OS=Bovine coronavirus (strain Mebus) OX=11132 GN=1a PE=3 SV=1 Length=4383 Score = 232 bits (592), Expect = 2e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U1|R1A_CVBQ Replicase polyprotein 1a OS=Bovine coronavirus (strain Quebec) OX=11133 GN=1a PE=3 SV=1 Length=4383 Score = 232 bits (592), Expect = 2e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U4|R1A_CVHN2 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=1a PE=3 SV=1 Length=4441 Score = 232 bits (592), Expect = 2e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4291 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4350 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4351 ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4409 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4410 GFWRDGSCSC 4419 >sp|P0C6W9|R1AB_CVBM Replicase polyprotein 1ab OS=Bovine coronavirus (strain Mebus) OX=11132 GN=rep PE=3 SV=1 Length=7094 Score = 232 bits (592), Expect = 2e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6X6|R1AB_CVHOC Replicase polyprotein 1ab OS=Human coronavirus OC43 OX=31631 GN=rep PE=1 SV=1 Length=7095 Score = 232 bits (591), Expect = 2e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCRVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus 133/2005 OX=389230 GN=1a PE=3 SV=1 Length=4441 Score = 232 bits (591), Expect = 2e-70, Method: Composition-based stats. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4289 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4348 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4349 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4407 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4408 QYWVGYGCNCDALR 4421 >sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec) OX=11133 GN=rep PE=3 SV=1 Length=7059 Score = 232 bits (591), Expect = 2e-70, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS++LS CAF+VD K Y D++ GG PI NCVKMLC H GTG AITV P+ Sbjct 4233 AGTATEYASNSSILSLCAFSVDPKKTYLDFIQQGGTPIANCVKMLCDHAGTGMAITVKPD 4292 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4293 ATTSQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPVGI-KDPVSYVLTHDVCQVC 4351 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4352 GFWRDGSCSC 4361 >sp|P0C6U5|R1A_CVHN5 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=1a PE=3 SV=1 Length=4421 Score = 232 bits (591), Expect = 3e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4271 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4330 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4331 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4389 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4390 GFWRDGSCSC 4399 >sp|P0C6U3|R1A_CVHN1 Replicase polyprotein 1a OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=1a PE=1 SV=1 Length=4471 Score = 232 bits (591), Expect = 3e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4321 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4380 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4381 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4439 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4440 GFWRDGSCSC 4449 >sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus HKU4 OX=694007 GN=rep PE=1 SV=1 Length=7119 Score = 232 bits (591), Expect = 3e-70, Method: Composition-based stats. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4282 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4341 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4342 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4400 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4401 QYWVGYGCNCDALR 4414 >sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) OX=11144 GN=rep PE=1 SV=1 Length=7180 Score = 232 bits (591), Expect = 3e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4324 AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE 4383 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4384 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4442 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4443 GFWRDGSCSC 4452 >sp|P0C6X9|R1AB_CVMA5 Replicase polyprotein 1ab OS=Murine coronavirus (strain A59) OX=11142 GN=rep PE=1 SV=1 Length=7176 Score = 231 bits (590), Expect = 3e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4318 AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE 4377 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4378 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4436 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4437 GFWRDGSCSC 4446 >sp|P0C6X3|R1AB_CVHN2 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N2) OX=443240 GN=rep PE=3 SV=1 Length=7152 Score = 231 bits (590), Expect = 4e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4291 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4350 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4351 ATINQDSYGGASVCIYCRARVEHPDVDGLCKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4409 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4410 GFWRDGSCSC 4419 >sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus 133/2005 OX=389230 GN=rep PE=3 SV=1 Length=7126 Score = 231 bits (590), Expect = 4e-70, Method: Composition-based stats. Identities = 82/134 (61%), Positives = 95/134 (71%), Gaps = 1/134 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG TE +NSTVL+ AFAVD AKAY DY+ SGG P++N VKML TGTG AI+V PE Sbjct 4289 AGANTEFASNSTVLTLVAFAVDPAKAYLDYVGSGGTPLSNYVKMLAPKTGTGVAISVKPE 4348 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A DQE++GGAS CLYCR HI+HP+ G C K ++VQIP DPVGF LKN C VC Sbjct 4349 ATADQETYGGASVCLYCRAHIEHPDVSGVCKYKTRFVQIPAH-VRDPVGFLLKNVPCNVC 4407 Query 121 GMWKGYGCSCDQLR 134 W GYGC+CD LR Sbjct 4408 QYWVGYGCNCDALR 4421 >sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5) OX=443241 GN=rep PE=3 SV=1 Length=7132 Score = 231 bits (589), Expect = 4e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4271 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4330 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4331 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4389 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4390 GFWRDGSCSC 4399 >sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1) OX=443239 GN=rep PE=3 SV=1 Length=7182 Score = 231 bits (589), Expect = 4e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 92/130 (71%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE ANS++LS CAF+VD K Y DY+ GG PI NCVKMLC H GTG AIT+ PE Sbjct 4321 AGVATEYAANSSILSLCAFSVDPKKTYLDYIQQGGVPIINCVKMLCDHAGTGMAITIKPE 4380 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A ++Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DP+ + L + VC VC Sbjct 4381 ATINQDSYGGASVCIYCRARVEHPDVDGICKLRGKFVQVPLGI-KDPILYVLTHDVCQVC 4439 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4440 GFWRDGSCSC 4449 >sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) OX=11144 GN=1a PE=1 SV=1 Length=4474 Score = 230 bits (587), Expect = 8e-70, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4324 AGTATEYASNSAILSLCAFSVDPKKTYLDYIQQGGVPVTNCVKMLCDHAGTGMAITIKPE 4383 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4384 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4442 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4443 GFWRDGSCSC 4452 >sp|P0C6V0|R1A_CVMA5 Replicase polyprotein 1a OS=Murine coronavirus (strain A59) OX=11142 GN=1a PE=1 SV=1 Length=4468 Score = 230 bits (587), Expect = 1e-69, Method: Composition-based stats. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS +LS CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4318 AGTATEYASNSAILSLCAFSVDPKKTYLDYIKQGGVPVTNCVKMLCDHAGTGMAITIKPE 4377 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4378 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4436 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4437 GFWRDGSCSC 4446 >sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) OX=76344 GN=rep PE=3 SV=1 Length=7124 Score = 229 bits (585), Expect = 1e-69, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4266 AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE 4325 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4326 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4384 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4385 GFWRDGSCSC 4394 >sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) OX=76344 GN=1a PE=3 SV=1 Length=4416 Score = 229 bits (583), Expect = 3e-69, Method: Composition-based stats. Identities = 71/130 (55%), Positives = 90/130 (69%), Gaps = 1/130 (1%) Query 1 AGNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPE 60 AG ATE +NS + S CAF+VD K Y DY+ GG P+TNCVKMLC H GTG AIT+ PE Sbjct 4266 AGTATEYASNSAIRSLCAFSVDPKKTYLDYIQQGGAPVTNCVKMLCDHAGTGMAITIKPE 4325 Query 61 ANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVC 120 A +Q+S+GGAS C+YCR ++HP+ G C L+GK+VQ+P DPV + L + VC VC Sbjct 4326 ATTNQDSYGGASVCIYCRSRVEHPDVDGLCKLRGKFVQVPLGI-KDPVSYVLTHDVCQVC 4384 Query 121 GMWKGYGCSC 130 G W+ CSC Sbjct 4385 GFWRDGSCSC 4394 >sp|P0C6V5|R1A_IBVM Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=1a PE=1 SV=1 Length=3953 Score = 227 bits (578), Expect = 1e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3788 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3847 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3848 TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3906 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3907 TVCQCWIGYGCQCDSLRQP 3925 >sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=1a PE=3 SV=1 Length=3951 Score = 227 bits (578), Expect = 1e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=1a PE=1 SV=1 Length=3951 Score = 227 bits (578), Expect = 1e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette CK) OX=160235 GN=rep PE=3 SV=1 Length=6629 Score = 226 bits (576), Expect = 3e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain Beaudette) OX=11122 GN=rep PE=1 SV=1 Length=6629 Score = 226 bits (576), Expect = 3e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3786 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3845 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3846 TPDQDSYGGASVCLYCRAHIAHPGSVGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3904 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3905 TVCQCWIGYGCQCDSLRQP 3923 >sp|P0C6Y3|R1AB_IBVM Replicase polyprotein 1ab OS=Avian infectious bronchitis virus (strain M41) OX=11127 GN=rep PE=1 SV=1 Length=6631 Score = 225 bits (575), Expect = 3e-68, Method: Composition-based stats. Identities = 79/139 (57%), Positives = 91/139 (65%), Gaps = 5/139 (4%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDYLASGGQPITNCVKMLCTHTGTGQAITVTPEA 61 G+ TE +LS C+FAVD A Y Y+A+G QP+ NCVKML H G+G AIT P Sbjct 3788 GHETEEVDAVGILSLCSFAVDPADTYCKYVAAGNQPLGNCVKMLTVHNGSGFAITSKPSP 3847 Query 62 NMDQESFGGASCCLYCRCHIDHP----NPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVC 117 DQ+S+GGAS CLYCR HI HP N G C KG +VQIPTT DPVGF L+N VC Sbjct 3848 TPDQDSYGGASVCLYCRAHIAHPGGAGNLDGRCQFKGSFVQIPTT-EKDPVGFCLRNKVC 3906 Query 118 TVCGMWKGYGCSCDQLREP 136 TVC W GYGC CD LR+P Sbjct 3907 TVCQCWIGYGCQCDSLRQP 3925 >sp|Q008X5|R1A_WBV24 Replicase polyprotein 1a OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=1a PE=1 SV=1 Length=4555 Score = 40.3 bits (93), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (27%), Positives = 27/75 (36%), Gaps = 11/75 (15%) Query 53 QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF-- 110 AI+ P + ++ G S C C DH C G +VQIP ++ Sbjct 4467 IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TCQYAGYFVQIPREHVSNIFNLTD 4521 Query 111 ---TLKNT-VCTVCG 121 L N CT C Sbjct 4522 TPPCLHNKFTCTTCQ 4536 >sp|Q008X6|R1AB_WBV24 Replicase polyprotein 1ab OS=White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) OX=766180 GN=rep PE=1 SV=1 Length=6872 Score = 40.3 bits (93), Expect = 0.003, Method: Composition-based stats. Identities = 20/75 (27%), Positives = 27/75 (36%), Gaps = 11/75 (15%) Query 53 QAITVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGF-- 110 AI+ P + ++ G S C C DH C G +VQIP ++ Sbjct 4467 IAISQVPVQTIGYLTYAGISVCRQCATKQDH-----TCQYAGYFVQIPREHVSNIFNLTD 4521 Query 111 ---TLKNT-VCTVCG 121 L N CT C Sbjct 4522 TPPCLHNKFTCTTCQ 4536 >sp|Q7Z699|SPRE1_HUMAN Sprouty-related, EVH1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SPRED1 PE=1 SV=2 Length=444 Score = 34.9 bits (79), Expect = 0.17, Method: Composition-based stats. Identities = 16/77 (21%), Positives = 31/77 (40%), Gaps = 10/77 (13%) Query 56 TVTPEANMDQESFGGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNT 115 ++ + + ++ G S C+YC+ +H +++GK P DP+ + Sbjct 317 SLKIKKSKRRKEDGERSRCVYCQERFNHEE-----NVRGKCQDAP-----DPIKRCIYQV 366 Query 116 VCTVCGMWKGYGCSCDQ 132 C +C Y C D Sbjct 367 SCMLCAESMLYHCMSDS 383 >sp|Q924S8|SPRE1_MOUSE Sprouty-related, EVH1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Spred1 PE=1 SV=1 Length=444 Score = 33.8 bits (76), Expect = 0.33, Method: Composition-based stats. Identities = 17/64 (27%), Positives = 24/64 (38%), Gaps = 10/64 (16%) Query 69 GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGC 128 G S C+YC+ +H + +GK P DPV + C +C Y C Sbjct 330 GERSRCVYCQERFNHEE-----NARGKCQDAP-----DPVKRCIYQVSCMLCAESMLYHC 379 Query 129 SCDQ 132 D Sbjct 380 MSDS 383 >sp|Q5BJS7|CPNE9_RAT Copine-9 OS=Rattus norvegicus OX=10116 GN=Cpne9 PE=2 SV=1 Length=553 Score = 33.0 bits (74), Expect = 0.71, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 9 ANSTVLSFCAFAVDAAKAYKDYLASGGQ 36 NS ++ +F+VD+ + DY+ G Q Sbjct 270 TNSGTVTLLSFSVDSEFTFVDYIKGGTQ 297 >sp|Q1RLL3|CPNE9_MOUSE Copine-9 OS=Mus musculus OX=10090 GN=Cpne9 PE=1 SV=1 Length=553 Score = 33.0 bits (74), Expect = 0.71, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 9 ANSTVLSFCAFAVDAAKAYKDYLASGGQ 36 NS ++ +F+VD+ + DY+ G Q Sbjct 270 TNSGTVTLLSFSVDSEFTFVDYIKGGTQ 297 >sp|Q66JG9|SPRE1_XENTR Sprouty-related, EVH1 domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=spred1 PE=1 SV=1 Length=406 Score = 33.0 bits (74), Expect = 0.74, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (38%), Gaps = 10/64 (16%) Query 69 GGASCCLYCRCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLKNTVCTVCGMWKGYGC 128 G S C+YC+ +H + +GK P DP+ + C +C Y C Sbjct 292 GEHSSCVYCQERFNHEE-----NGRGKCQDAP-----DPIQRCIYQVSCMLCAESMLYHC 341 Query 129 SCDQ 132 D Sbjct 342 MSDS 345 >sp|Q8IYJ1|CPNE9_HUMAN Copine-9 OS=Homo sapiens OX=9606 GN=CPNE9 PE=1 SV=3 Length=553 Score = 32.6 bits (73), Expect = 0.93, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 9 ANSTVLSFCAFAVDAAKAYKDYLASGGQ 36 NS ++ +F+VD+ + DY+ G Q Sbjct 270 VNSGTVTLLSFSVDSEFTFVDYIKGGTQ 297 >sp|Q8JZW4|CPNE5_MOUSE Copine-5 OS=Mus musculus OX=10090 GN=Cpne5 PE=1 SV=1 Length=593 Score = 32.6 bits (73), Expect = 0.95, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 9 ANSTVLSFCAFAVDAAKAYKDYLASGGQ 36 NS ++ +FAV++ + DY+ G Q Sbjct 299 VNSGTVTLLSFAVESESTFLDYIKGGTQ 326 >sp|Q58087|Y674_METJA Uncharacterized protein MJ0674 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0674 PE=4 SV=1 Length=338 Score = 31.5 bits (70), Expect = 2.2, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 18/64 (28%) Query 74 CLYC--RCHIDHPNPKGFCDLKGKY------------VQIPTTCANDPVGFTLKNTVCTV 119 C +C RC+++ +GFC +K Y V +P+ + F N C Sbjct 80 CHFCEHRCYVNRETERGFCRIKESYYSTEFLHLGEERVLVPSHT----IFFCGCNFKCVF 135 Query 120 CGMW 123 C W Sbjct 136 CQNW 139 >sp|Q9HCH3|CPNE5_HUMAN Copine-5 OS=Homo sapiens OX=9606 GN=CPNE5 PE=1 SV=2 Length=593 Score = 31.5 bits (70), Expect = 2.5, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 0/28 (0%) Query 9 ANSTVLSFCAFAVDAAKAYKDYLASGGQ 36 NS ++ +FAV++ + DY+ G Q Sbjct 299 VNSGTVTLLSFAVESECTFLDYIKGGTQ 326 >sp|Q28U74|SUCC_JANSC Succinate--CoA ligase [ADP-forming] subunit beta OS=Jannaschia sp. (strain CCS1) OX=290400 GN=sucC PE=3 SV=1 Length=397 Score = 30.3 bits (67), Expect = 6.3, Method: Composition-based stats. Identities = 17/52 (33%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query 2 GNATEVPANSTVLSFCAFAVDAAKAYKDY--------LASGGQPITNCVKML 45 G E A ST +F+VD A Y+ Y L GQ + CVK++ Sbjct 140 GMDIEEVAASTPEKILSFSVDPATGYQPYHGRRVAFSLGLEGQQVKQCVKLM 191 >sp|Q6SWC8|UL01_HCMVM Glycoprotein UL1 OS=Human cytomegalovirus (strain Merlin) OX=295027 GN=UL1 PE=3 SV=1 Length=218 Score = 29.5 bits (65), Expect = 8.6, Method: Composition-based stats. Identities = 12/38 (32%), Positives = 18/38 (47%), Gaps = 1/38 (3%) Query 92 LKGKYVQIPTTCAN-DPVGFTLKNTVCTVCGMWKGYGC 128 L+ ++VQIP T A D + F + + C W C Sbjct 41 LQSEHVQIPITVAEGDTICFNVSDNPCNFSSYWNHNNC 78 Lambda K H a alpha 0.317 0.143 0.487 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0439 0.140 1.90 42.6 43.6 Effective search space used: 5150839400 Search has CONVERGED! Database: uniprot_sprot.fasta Posted date: Feb 9, 2024 7:20 PM Number of letters in database: 206,533,160 Number of sequences in database: 570,830 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40