Contact Molecules for Homologous Proteins

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PID QueryLength Homolgous Sequence in PDB UniProt Query TITLE
1704685 925 205 O95786(RIGI_HUMAN) RecName: Full=Antiviral innate immune response receptor RIG-I ;AltName: Full=ATP-dependent RNA helicase DDX58 ; EC=3.6.4.13 ;AltName: Full=DEAD box protein 58;AltName: Full=RIG-I-like receptor 1; Short=RLR-1;AltName: Full=RNA sensor RIG-I ;AltName: Full=Retinoic acid-inducible gene 1 protein; Short=RIG-1;AltName: Full=Retinoic acid-inducible gene I protein; Short=RIG-I;
QUERYSEQ 
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMA
GAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI
PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE
QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV
SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEK
EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
VQTLYSKWKDFHFEKIPFDPAEMSK
[BLAST file for PDB] (plain) (bar) (multiple alignment) [BLAST for UniProt: (plain) (bar) (multiple alignment) (PSSM file) ]

UniProt Feature Tables [O95786(RIGI_HUMAN)]

925
region name description
1-925 CHAIN /note="Antiviral innate immune response receptor RIG-I" /id="PRO_0000144093"
1-87 DOMAIN /note="CARD 1"
92-172 DOMAIN /note="CARD 2"
251-430 DOMAIN /note="Helicase ATP-binding"
610-776 DOMAIN /note="Helicase C-terminal"
794-925 DOMAIN /note="RLR CTR"
218-925 REGION /note="Interaction with ZC3HAV1"
735-925 REGION /note="Mediates interaction with RNF135"
264-271 BINDING /ligand="ATP" /ligand_id="ChEBI:CHEBI:30616"
810-810 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
813-813 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
864-864 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
869-869 BINDING /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105"
1-925 DISORDER predicted by DISOPRED

MONOMER
925
pdb_id a1 identity[%]2 description
8dvs A 100.0 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4a2w A 55.7 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I 
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue.
HETERO
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
7jl1[4] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[171 aa] A 100.0
/100.0		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] D RN135_HUMAN E3 ubiquitin-protein ligase RNF135[169 aa] A 100.0
/100.0		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4nqk[6] E UBC_HUMAN Ubiquitin[72 aa] A 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4nqk[9] J UBC_HUMAN Ubiquitin[73 aa] A 100.0
/100.0		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4nqk[5] F UBC_HUMAN Ubiquitin[73 aa] B 100.0
/100.0		 11
/11		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[1] Q RL40_HUMAN Ubiquitin-60S ribosomal protein L40[73 aa] H 100.0
/99.5		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[8] I MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] A 100.0
/99.5		 11
/11		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[6] I MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] B 100.0
/99.5		 6
/6		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[3] I MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] C 100.0
/99.5		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[2] I MAVS_HUMAN Mitochondrial antiviral-signaling protein[97 aa] D 100.0
/99.5		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7jl0[4] D TRI65_HUMAN Tripartite motif-containing protein 65[180 aa] C 33.3
/40.2		 9
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4i1s[1] B V_SV5 Non-structural protein V[52 aa] A 44.0
/37.6		 25
/26		 A7LCX1_PIG A7LCX1_PIG Melanoma differentiation associated protein-5
7v6c[1] B Q9VLW8_DROME R2D2[260 aa] A 100.0
/32.5		 1
/43		 A1ZAW0_DROME Dicer-2, isoform A
5m59[4] A G0SFL3_CHATD Putative pre-mRNA splicing factor[266 aa] B 28.6
/31.9		 7
/57		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
7w0a[8] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 33.3
/29.7		 21
/27		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[1] C M9MRT5_DROME Loquacious, isoform D[13 aa] E 34.8
/29.7		 23
/25		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[5] C Q9VLW8_DROME LD06392p[126 aa] A 19.0
/29.7		 21
/31		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[3] C Q9VLW8_DROME LD06392p[126 aa] D 20.0
/29.7		 5
/11		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[1] B M9MRT5_DROME Loquacious, isoform D[16 aa] A 31.6
/29.7		 19
/23		 A1ZAW0_DROME Dicer-2, isoform A
8dfv[2] C Q9VJY9_DROME Loquacious, isoform B[253 aa] A 0.0
/24.1		 3
/55		 DCR1_DROME Endoribonuclease Dcr-1
8dg7[1] D Q9VJY9_DROME Loquacious, isoform B[181 aa] A 0.0
/23.7		 3
/46		 DCR1_DROME Endoribonuclease Dcr-1
8dgi[2] B Q9VJY9_DROME Loquacious, isoform B[108 aa] A 0.0
/23.7		 2
/23		 DCR1_DROME Endoribonuclease Dcr-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
NUCLEOTIDE
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3ncu[2] C 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 100.0
/100.0		 13
/13		 DDX58_HUMAN RIG-I
3ncu[2] D 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3' A 100.0
/100.0		 4
/4		 DDX58_HUMAN RIG-I
7bai[4] C RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 100.0
/100.0		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bai[4] D RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C).. A 100.0
/100.0		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5e3h[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 100.0
/100.0		 18
/18		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] C RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*U)-3').. A 100.0
/100.0		 27
/27		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[12] B RNA (5'-R(P*GP*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP.. A 100.0
/100.0		 40
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[6] B RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP.. A 100.0
/100.0		 37
/37		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6kyv[6] A RNA (5'-R(*GP*GP*UP*AP*GP*AP*CP*GP*CP*UP*UP*CP*GP*.. B 100.0
/100.0		 46
/46		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7bah[2] C RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 100.0
/100.0		 11
/11		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7bah[2] D RNA (5'-R(*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3').. A 100.0
/100.0		 3
/3		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl0[1] A RNA (5'-R(P*GP*AP*CP*UP*GP*AP*CP*UP*GP*AP*CP*UP*GP.. C 60.0
/40.2		 10
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] B dsRNA strand 1 A 100.0
/100.0		 17
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl0[1] B RNA (5'-R(P*UP*CP*AP*GP*UP*CP*AP*GP*UP*CP*AP*GP*UP.. C 71.4
/40.2		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[1] C dsRNA strand 2 A 100.0
/100.0		 27
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[3] G dsRNA strand1 A 100.0
/100.0		 14
/14		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[3] H dsRNA strand 2 A 100.0
/100.0		 24
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7mk1[2] C DNA (41-MER) A 100.0
/100.0		 17
/17		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[1] B p3dsRNAa A 100.0
/100.0		 24
/24		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[1] C p3dsRNAb A 100.0
/100.0		 21
/21		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tny[2] B p2dsRNA A 100.0
/100.0		 26
/26		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tny[2] C p2dsRNA A 100.0
/100.0		 29
/29		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] B OHdsRNA A 100.0
/100.0		 27
/27		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to0[1] C OHdsRNA A 100.0
/100.0		 28
/28		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to1[1] B p3SLR30 A 100.0
/100.0		 41
/41		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[1] B p3SLR30 A 100.0
/100.0		 57
/57		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvr[1] B p3SLR30 A 100.0
/100.0		 33
/33		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvs[1] B OHSLR30 A 100.0
/100.0		 48
/48		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
8dvu[1] B OHSLR30 A 100.0
/100.0		 55
/55		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
6gpg[1] A RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 100.0
/99.8		 19
/19		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6gpg[1] B RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*.. C 100.0
/99.8		 29
/29		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4ay2[1] B 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP.. A 100.0
/99.7		 31
/31		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2ykg[4] B 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 100.0
/99.5		 16
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
2ykg[4] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3' A 100.0
/99.5		 16
/16		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3og8[2] C RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 90.9
/99.2		 11
/11		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
3og8[2] D RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*.. A 100.0
/99.2		 4
/4		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
3lrn[2] C RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 93.3
/99.2		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrn[2] D RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP.. A 100.0
/99.2		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] C RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 93.3
/99.2		 15
/15		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3lrr[2] D RNA (5'-R(*(ATP)P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*U).. A 100.0
/99.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4a36[1] C 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. A 28.6
/60.0		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] D 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. A 70.8
/60.0		 24
/24		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] E 5'-R(*GP*CP*AP*UP*GP*CP*GP*AP*CP*CP*UP*CP*UP*GP *U.. B 28.6
/59.7		 7
/7		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a36[1] F 5'-R(*UP*CP*AP*AP*AP*CP*AP*GP*AP*GP*GP*UP*CP*GP *C.. B 72.0
/59.7		 25
/25		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. A 88.9
/55.3		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] E 5'-R(*GP*GP*GP*AP*GP*AP*AP*CP*AP*AP*CP*GP*CP*GP)-3.. B 100.0
/55.3		 1
/1		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. A 0.0
/55.3		 2
/2		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2x[2] F 5'-R(*CP*GP*CP*GP*UP*UP*GP*UP*UP*CP*UP*CP*CP*CP)-3.. B 88.9
/55.3		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4gl2[2] C RNA (5'-R(*AP*UP*CP*CP*GP*CP*GP*GP*CP*CP*CP*U)-3').. A 46.2
/41.4		 13
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
4gl2[2] F RNA (5'-R(P*AP*GP*GP*GP*CP*CP*GP*CP*GP*GP*AP*U)-3'.. A 58.6
/41.4		 29
/29		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[3] A RNA (44-MER) C 53.8
/40.2		 13
/14		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[3] B RNA (44-MER) C 57.1
/40.2		 21
/21		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
6gkh[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 50.0
/39.0		 14
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7nic[1] B RNA (5'-R(P*GP*UP*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP.. A 33.3
/38.8		 18
/19		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkh[2] C RNA (5'-R(P*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP*GP.. A 65.4
/39.0		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7niq[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 50.0
/38.8		 16
/18		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7niq[1] C RNA (5'-R(P*AP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 63.6
/38.8		 22
/22		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1s[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 50.0
/39.6		 14
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 50.0
/39.5		 10
/11		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 53.3
/39.2		 15
/15		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 54.5
/38.6		 11
/12		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/38.6		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] B RNA (5'-R(P*UP*CP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP*AP.. A 0.0
/38.6		 2
/2		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6g1s[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 69.2
/39.6		 26
/26		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g1x[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 64.0
/39.5		 25
/25		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6h61[3] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 70.4
/39.2		 27
/27		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[1] C RNA (5'-R(P*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP*AP*UP*GP.. A 100.0
/38.6		 1
/1		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
6g19[1] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.4
/38.8		 19
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[2] B RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 47.4
/38.8		 19
/21		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkp[1] C RNA (5'-R(P*CP*AP*AP*GP*CP*CP*GP*AP*GP*GP*AP*GP*AP.. A 44.4
/38.3		 18
/20		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6g19[1] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 58.6
/38.8		 29
/29		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gjz[3] C RNA (5'-R(P*CP*UP*CP*UP*CP*CP*UP*CP*GP*GP*CP*UP*UP.. A 60.0
/38.8		 30
/30		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
5jaj[1] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 70.3
/35.4		 37
/37		 G0YYQ5_CHICK LGP2
5jc3[6] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 45.0
/38.1		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc3[5] C RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 56.7
/38.1		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. A 45.0
/38.0		 20
/20		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] C RNA (5'-R(P*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP*CP.. B 60.0
/37.9		 30
/30		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. A 58.1
/38.0		 31
/31		 D9N195_CHICK Melanoma differentiation associated protein-5
5jc7[1] D RNA (5'-R(P*GP*GP*GP*AP*CP*GP*UP*CP*AP*UP*GP*CP*GP.. B 47.4
/37.9		 19
/19		 D9N195_CHICK Melanoma differentiation associated protein-5
5jcf[1] C RNA (5'-R(P*AP*GP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 62.1
/37.8		 29
/29		 D9N195_CHICK Melanoma differentiation associated protein-5
5jbj[1] B RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 30.8
/35.9		 26
/26		 G0YYQ5_CHICK LGP2
5jbj[1] C RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'.. A 70.6
/35.9		 34
/34		 G0YYQ5_CHICK LGP2
5jaj[1] B RNA (5'-R(P*GP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') A 30.8
/35.4		 26
/26		 G0YYQ5_CHICK LGP2
5jbg[1] B RNA (5'-R(*GPPP*GP*AP*GP*CP*GP*UP*GP*CP*CP*GP*GP*G.. A 44.8
/35.1		 67
/67		 G0YYQ5_CHICK LGP2
5jb2[1] B RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*CP*C)-3') .. A 30.8
/34.8		 26
/26		 G0YYQ5_CHICK LGP2
5jb2[1] C RNA (5'-R(*GPPP*GP*UP*AP*CP*GP*UP*AP*CP*C)-3') A 69.4
/34.8		 36
/36		 G0YYQ5_CHICK LGP2
6bu9[1] B RNA (5'-R(*GP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*.. A 0.0
/33.7		 1
/1		 A1ZAW0_DROME Dicer-2, isoform A
7yym[3] B 59-nt precursor of miR-15a A 0.0
/33.7		 1
/15		 DICER_MOUSE Endoribonuclease Dicer
5zal[1] C RNA (73-mer) A 50.0
/32.8		 4
/31		 DICER_HUMAN Endoribonuclease Dicer
5zam[1] C RNA (73-mer) A 100.0
/32.8		 2
/27		 DICER_HUMAN Endoribonuclease Dicer
7v6c[1] C RNA (5'-R(P*UP*GP*AP*GP*G)-3') A 25.0
/32.5		 4
/5		 A1ZAW0_DROME Dicer-2, isoform A
7v6c[1] D RNA (5'-R(P*CP*CP*UP*CP*UP*CP*U)-3') A 57.1
/32.5		 7
/8		 A1ZAW0_DROME Dicer-2, isoform A
7eld[1] B pri-miRNA 166f A 26.5
/32.3		 34
/74		 DCL1_ARATH Endoribonuclease Dicer homolog 1
7ele[1] B pre-miRNA 166f A 25.8
/32.3		 31
/63		 DCL1_ARATH Endoribonuclease Dicer homolog 1
3eqt[2] C 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 40.0
/31.2		 15
/15		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
3eqt[2] D 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3' A 66.7
/31.2		 6
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
5v9x[1] B ssDNA A 23.1
/31.1		 13
/52		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
7w0a[2] C RNA (30-MER) A 28.6
/29.7		 7
/17		 A1ZAW0_DROME Dicer-2, isoform A
7w0a[2] D RNA (32-MER) A 50.0
/29.7		 22
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] C RNA (35-MER) A 18.2
/29.7		 11
/20		 A1ZAW0_DROME Dicer-2, isoform A
7w0c[1] D RNA (35-MER) A 47.6
/29.7		 21
/29		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] B dsRNA D 50.0
/29.7		 20
/37		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[2] F dsRNA D 25.0
/29.7		 8
/22		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] A dsRNA C 30.0
/29.7		 10
/38		 A1ZAW0_DROME Dicer-2, isoform A
7w0e[1] B dsRNA C 45.0
/29.7		 20
/61		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] E siRNA A 27.3
/29.7		 11
/19		 A1ZAW0_DROME Dicer-2, isoform A
7w0f[1] F siRNA A 47.4
/29.7		 19
/32		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] F RNA (52-MER) A 30.0
/29.7		 10
/15		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[2] G RNA (52-MER) A 47.4
/29.7		 19
/24		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] E RNA (5'-R(P*GP*AP*GP*AP*CP*UP*UP*GP*G)-3') A 42.9
/29.7		 7
/13		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[3] H RNA (5'-R(P*CP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3') A 50.0
/29.7		 18
/23		 A1ZAW0_DROME Dicer-2, isoform A
8dfv[1] B RNA (60-MER) A 100.0
/24.1		 1
/79		 DCR1_DROME Endoribonuclease Dcr-1
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
COMPOUND
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
3zd7[22] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/99.4		 14
/14		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
6gkh[4] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 81.8
/39.0		 11
/13		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6qv3[1] B ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 71.4
/31.9		 7
/13		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
6qv3[1] D ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/31.9		 1
/13		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
7jl0[4] F ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		C 80.0
/40.2		 10
/11		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/100.0		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] E ADP
ADENOSINE-5'-DIPHOSPHATE[27 atoms] 		A 100.0
/100.0		 12
/12		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5f98[6] O M7G
7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE[29 atoms.. 		A 100.0
/100.0		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[6] Q GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 100.0
/100.0		 10
/10		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
8dvr[1] D GTP
GUANOSINE-5'-TRIPHOSPHATE[32 atoms] 		A 100.0
/100.0		 10
/10		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
3tbk[4] B ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 91.7
/78.8		 12
/12		 DDX58_MOUSE RIG-I Helicase Domain
5v9x[1] C ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 100.0
/31.1		 6
/17		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
6gjz[1] E ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER[31 ato.. 		A 77.8
/38.8		 9
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gkm[2] E ATP
ADENOSINE-5'-TRIPHOSPHATE[31 atoms] 		A 77.8
/38.5		 9
/10		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6qv4[1] E AGS
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER[31 atom.. 		A 75.0
/31.9		 8
/17		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
6qv4[1] F AGS
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER[31 atom.. 		A 33.3
/31.9		 3
/16		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
METAL
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
2qfb[10] K ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2rqa[12] B ZN
ZINC ION[1 atoms] 		A 83.3
/31.2		 6
/6		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
2rqb[3] B ZN
ZINC ION[1 atoms] 		A 80.0
/31.6		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
2ykg[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/99.5		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3lrn[4] E ZN
ZINC ION[1 atoms] 		A 100.0
/99.2		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3ncu[2] E ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN RIG-I
3og8[9] E ZN
ZINC ION[1 atoms] 		A 100.0
/99.2		 4
/4		 DDX58_HUMAN ATP-dependent RNA helicase DDX58
4ay2[7] C ZN
ZINC ION[1 atoms] 		A 100.0
/99.7		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4bpb[23] D ZN
ZINC ION[1 atoms] 		A 100.0
/99.5		 4
/4		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4gl2[10] H ZN
ZINC ION[1 atoms] 		A 80.0
/41.4		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
5jaj[1] D ZN
ZINC ION[1 atoms] 		A 100.0
/35.4		 4
/4		 G0YYQ5_CHICK LGP2
5jb2[3] D ZN
ZINC ION[1 atoms] 		A 100.0
/34.8		 4
/4		 G0YYQ5_CHICK LGP2
6gjz[5] D ZN
ZINC ION[1 atoms] 		A 100.0
/38.8		 4
/4		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[1] D ZN
ZINC ION[1 atoms] 		C 100.0
/99.8		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7bkp[4] D ZN
ZINC ION[1 atoms] 		A 100.0
/38.3		 5
/5		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7bkq[2] D ZN
ZINC ION[1 atoms] 		A 80.0
/38.6		 5
/5		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7jl0[4] E ZN
ZINC ION[1 atoms] 		C 100.0
/40.2		 4
/4		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] H ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7tnx[9] D ZN
ZINC ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
3zd7[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/99.4		 2
/2		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
4a36[13] H MG
MAGNESIUM ION[1 atoms] 		A 100.0
/60.0		 5
/5		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4ay2[1] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/99.7		 3
/3		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
5e3h[5] E MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5e3h[2] G MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] N MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[4] N MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[2] N MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] O MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] P MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] U MG
MAGNESIUM ION[1 atoms] 		E 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9h[1] X MG
MAGNESIUM ION[1 atoms] 		G 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jaj[1] G MG
MAGNESIUM ION[1 atoms] 		A 100.0
/35.4		 2
/2		 G0YYQ5_CHICK LGP2
5jb2[2] G MG
MAGNESIUM ION[1 atoms] 		A 100.0
/34.8		 2
/2		 G0YYQ5_CHICK LGP2
5jb2[1] H MG
MAGNESIUM ION[1 atoms] 		A 0.0
/34.8		 1
/1		 G0YYQ5_CHICK LGP2
5v9x[1] H MG
MAGNESIUM ION[1 atoms] 		A 100.0
/31.1		 3
/3		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
6gkh[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/39.0		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
6gpg[4] E MG
MAGNESIUM ION[1 atoms] 		C 100.0
/99.8		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7bkp[1] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/38.3		 1
/1		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[1] H MG
MAGNESIUM ION[1 atoms] 		C 100.0
/40.2		 1
/1		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7mk1[2] F MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 1
/1		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7to2[3] D MG
MAGNESIUM ION[1 atoms] 		A 100.0
/100.0		 2
/2		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4on9[1] G CL
CHLORIDE ION[1 atoms] 		B 100.0
/100.0		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6bzh[1] G CL
CHLORIDE ION[1 atoms] 		A 66.7
/76.5		 3
/3		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[1] H CL
CHLORIDE ION[1 atoms] 		A 100.0
/76.5		 1
/1		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[1] L CL
CHLORIDE ION[1 atoms] 		D 0.0
/76.5		 3
/3		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
3b6e[1] B NA
SODIUM ION[1 atoms] 		A 100.0
/51.0		 5
/5		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
6qv3[2] F MN
MANGANESE (II) ION[1 atoms] 		A 100.0
/31.9		 2
/2		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
2qfd[10] K HG
MERCURY (II) ION[1 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
2w4r[4] E HG
MERCURY (II) ION[1 atoms] 		A 100.0
/31.5		 4
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
HOMO
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
4on9[2] B DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[495 aa] A 100.0
/100.0		 40
/40		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[18] C DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[648 aa] A 100.0
/100.0		 20
/20		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] E DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[641 aa] A 100.0
/100.0		 26
/26		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] A 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] A 100.0
/100.0		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] G DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[647 aa] C 100.0
/100.0		 11
/11		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f98[6] K DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[644 aa] C 100.0
/100.0		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
7jl3[2] C DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 100.0
/100.0		 7
/7		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
7jl3[2] E DDX58_HUMAN Antiviral innate immune response receptor RIG-I[65.. A 100.0
/100.0		 6
/6		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
4nqk[18] B DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[188 aa] A 100.0
/100.0		 21
/21		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4nqk[12] D DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[188 aa] A 100.0
/100.0		 12
/12		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[2] E DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[188 aa] A 100.0
/99.5		 3
/3		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4p4h[8] H DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58[188 aa] A 100.0
/99.5		 2
/2		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
6bzh[4] C DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58[191 aa] A 82.4
/76.5		 17
/17		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[4] D DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58[189 aa] A 72.7
/76.5		 22
/22		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
7jl2[2] E IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 0.0
/40.2		 9
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl2[2] G IFIH1_HUMAN Interferon-induced helicase C domain-containing pr.. C 0.0
/40.2		 7
/9		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 10.0
/38.6		 10
/11		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
7bkq[1] A IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-.. A 14.3
/38.6		 7
/13		 IFIH1_MOUSE Isoform 2 of Interferon-induced helicase C domain-..
5jc7[2] B D9N195_CHICK Melanoma differentiation associated protein-5[647 .. A 35.0
/38.0		 20
/21		 D9N195_CHICK Melanoma differentiation associated protein-5
3eqt[2] B DHX58_HUMAN ATP-dependent RNA helicase DHX58[142 aa] A 0.0
/31.2		 2
/2		 DHX58_HUMAN ATP-dependent RNA helicase DHX58
7w0a[2] H A1ZAW0_DROME Dicer-2, isoform A[1478 aa] A 46.4
/29.7		 28
/55		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[1] E A1ZAW0_DROME Dicer-2, isoform A[660 aa] D 0.0
/29.7		 1
/6		 A1ZAW0_DROME Dicer-2, isoform A
7w0d[1] D A1ZAW0_DROME Dicer-2, isoform A[1544 aa] E 0.0
/29.7		 2
/8		 A1ZAW0_DROME Dicer-2, isoform A
8hf0[1] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 40.0
/29.7		 5
/13		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[2] D A1ZAW0_DROME Dicer-2, isoform A[1561 aa] A 0.0
/29.7		 7
/28		 A1ZAW0_DROME Dicer-2, isoform A
8hf1[2] A A1ZAW0_DROME Dicer-2, isoform A[1561 aa] D 33.3
/29.7		 6
/31		 A1ZAW0_DROME Dicer-2, isoform A
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.
PRECIPITANT
925 pdb_id contact mol homologue
a3 description a4 identity[%]5 Ncon6 description
5e3h[1] J BEF
BERYLLIUM TRIFLUORIDE ION[4 atoms] 		A 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] O ETF
TRIFLUOROETHANOL[6 atoms] 		A 100.0
/100.0		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Y ETF
TRIFLUOROETHANOL[6 atoms] 		E 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] CA ETF
TRIFLUOROETHANOL[6 atoms] 		G 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] NA ETF
TRIFLUOROETHANOL[6 atoms] 		K 100.0
/100.0		 6
/6		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] P BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 100.0
/100.0		 7
/7		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] Q BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] U BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		A 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] T BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] V BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[5] W BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		C 100.0
/100.0		 8
/8		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[2] AA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		E 100.0
/100.0		 9
/9		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5f9f[1] EA BU3
(R,R)-2,3-BUTANEDIOL[6 atoms] 		G 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
3tbk[1] C EDO
1,2-ETHANEDIOL[4 atoms] 		A 100.0
/78.8		 7
/7		 DDX58_MOUSE RIG-I Helicase Domain
5jaj[1] H EDO
1,2-ETHANEDIOL[4 atoms] 		A 60.0
/35.4		 5
/5		 G0YYQ5_CHICK LGP2
5jaj[1] I EDO
1,2-ETHANEDIOL[4 atoms] 		A 50.0
/35.4		 4
/5		 G0YYQ5_CHICK LGP2
5jaj[1] J EDO
1,2-ETHANEDIOL[4 atoms] 		A 50.0
/35.4		 6
/6		 G0YYQ5_CHICK LGP2
6bzh[2] F EDO
1,2-ETHANEDIOL[4 atoms] 		A 100.0
/76.5		 2
/2		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[1] I EDO
1,2-ETHANEDIOL[4 atoms] 		B 100.0
/76.5		 1
/3		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[1] J EDO
1,2-ETHANEDIOL[4 atoms] 		B 100.0
/76.5		 2
/2		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
6bzh[1] J EDO
1,2-ETHANEDIOL[4 atoms] 		C 75.0
/76.1		 4
/4		 DDX58_MOUSE Probable ATP-dependent RNA helicase DDX58
4a36[2] I AF3
ALUMINUM FLUORIDE[4 atoms] 		A 100.0
/60.0		 9
/9		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
5jaj[1] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/35.4		 8
/8		 G0YYQ5_CHICK LGP2
5jb2[2] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/34.8		 8
/8		 G0YYQ5_CHICK LGP2
6gkh[3] E ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/39.0		 6
/6		 IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
7jl0[4] G ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		C 100.0
/40.2		 6
/6		 IFIH1_HUMAN Interferon-induced helicase C domain-containing pr..
7jl1[4] F ALF
TETRAFLUOROALUMINATE ION[5 atoms] 		A 100.0
/100.0		 5
/5		 DDX58_HUMAN Antiviral innate immune response receptor RIG-I
5jaj[1] K MGF
TRIFLUOROMAGNESATE[4 atoms] 		A 0.0
/35.4		 1
/1		 G0YYQ5_CHICK LGP2
2w4r[4] F SO4
SULFATE ION[5 atoms] 		A 0.0
/31.5		 3
/3		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2w4r[1] K SO4
SULFATE ION[5 atoms] 		C 25.0
/31.9		 4
/4		 DHX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DHX58
2ykg[3] E SO4
SULFATE ION[5 atoms] 		A 100.0
/99.5		 7
/7		 DDX58_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
3ts9[1] B SO4
SULFATE ION[5 atoms] 		A 100.0
/36.8		 1
/1		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
3ts9[4] D SO4
SULFATE ION[5 atoms] 		A 25.0
/36.8		 4
/4		 IFIH1_MOUSE IFIH1_MOUSE Interferon-induced helicase C domain-containing pr..
4on9[2] D SO4
SULFATE ION[5 atoms] 		A 100.0
/100.0		 4
/4		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
4on9[2] E SO4
SULFATE ION[5 atoms] 		A 100.0
/100.0		 1
/1		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5jbg[1] G SO4
SULFATE ION[5 atoms] 		A 50.0
/35.1		 2
/3		 G0YYQ5_CHICK LGP2
5jbg[1] H SO4
SULFATE ION[5 atoms] 		A 33.3
/35.1		 3
/3		 G0YYQ5_CHICK LGP2
5jbg[1] I SO4
SULFATE ION[5 atoms] 		A 0.0
/35.1		 1
/1		 G0YYQ5_CHICK LGP2
5jbg[1] J SO4
SULFATE ION[5 atoms] 		A 25.0
/35.1		 4
/4		 G0YYQ5_CHICK LGP2
6qws[1] C SO4
SULFATE ION[5 atoms] 		A 100.0
/31.9		 5
/5		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
6qws[1] E SO4
SULFATE ION[5 atoms] 		A 100.0
/31.9		 1
/3		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
5m59[4] I ACT
ACETATE ION[4 atoms] 		B 83.3
/31.9		 6
/6		 G0S0B9_CHATD Pre-mRNA splicing helicase-like protein
4a2v[1] C GOL
GLYCEROL[6 atoms] 		A 66.7
/55.3		 6
/8		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
4a2v[1] D GOL
GLYCEROL[6 atoms] 		A 66.7
/55.3		 3
/3		 D3TI84_ANAPL RETINOIC ACID INDUCIBLE PROTEIN I
5e3h[1] H GOL
GLYCEROL[6 atoms] 		A 100.0
/100.0		 5
/5		 DDX58_HUMAN Probable ATP-dependent RNA helicase DDX58
5v9x[1] E GOL
GLYCEROL[6 atoms] 		A 0.0
/31.1		 3
/9		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
5v9x[1] G GOL
GLYCEROL[6 atoms] 		A 50.0
/31.1		 2
/4		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
5v9x[1] I PEG
DI(HYDROXYETHYL)ETHER[7 atoms] 		A 33.3
/31.1		 3
/5		 A0A0D6HFY2_MYCSM ATP-dependent DNA helicase
1wp9[6] G PO4
PHOSPHATE ION[5 atoms] 		A 85.7
/29.3		 7
/7		 Q8TZH8_PYRFU ATP-dependent RNA helicase, putative
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue.