PSIBLAST 2.11.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: uniprot_sprot.fasta
571,282 sequences; 206,678,396 total letters
Results from round 1
Query= sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RIG-I
OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI... 1921 0.0
sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI... 1480 0.0
sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-... 1478 0.0
sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai... 370 2e-111
sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai... 367 2e-110
sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus... 331 4e-100
sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa... 307 3e-91
sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru... 127 3e-28
sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ... 123 3e-27
sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ... 123 4e-27
sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus... 123 4e-27
sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi... 120 4e-26
sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri... 117 3e-25
sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s... 116 4e-25
sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (... 116 4e-25
sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ... 115 8e-25
sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi... 114 3e-24
sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop... 113 3e-24
sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu... 112 7e-24
sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa... 112 8e-24
sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus... 112 1e-23
sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu... 111 2e-23
sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ... 111 2e-23
sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac... 110 2e-23
sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=... 108 6e-23
sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru... 108 1e-22
sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri... 108 2e-22
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ... 106 3e-22
sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (... 106 6e-22
sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa... 105 1e-21
sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s... 103 3e-21
sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu... 102 1e-20
sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi... 97.8 3e-19
sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor... 95.9 8e-19
sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill... 95.9 9e-19
sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill... 95.9 1e-18
sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog... 95.9 1e-18
sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill... 94.4 3e-18
sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (... 94.4 3e-18
sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill... 94.0 3e-18
sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill... 94.0 3e-18
sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele... 94.4 4e-18
sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis... 93.6 5e-18
sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O... 89.7 8e-17
sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill... 87.4 3e-16
sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O... 87.4 4e-16
sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger... 86.3 1e-15
sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79... 84.7 3e-15
sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular... 83.2 8e-15
sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali... 80.5 5e-14
sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu... 80.1 7e-14
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana... 79.3 1e-13
sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (... 78.2 3e-13
sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (... 77.8 3e-13
sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ... 77.8 4e-13
sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1... 77.4 6e-13
sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop... 76.6 9e-13
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M... 75.9 1e-12
sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9... 75.5 2e-12
sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991... 75.5 2e-12
sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s... 75.1 3e-12
sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ... 72.4 2e-11
sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ... 72.4 2e-11
sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ... 71.2 4e-11
sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor... 69.7 9e-11
sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger... 68.2 3e-10
sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=... 67.8 4e-10
sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu... 67.4 5e-10
sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis... 67.8 5e-10
sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec... 65.9 2e-09
sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal... 65.9 2e-09
sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi... 63.2 1e-08
sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom... 62.8 1e-08
sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom... 62.8 1e-08
sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a... 62.8 1e-08
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers... 62.0 2e-08
sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g... 61.6 3e-08
sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin... 61.6 3e-08
sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy... 61.2 4e-08
sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin... 60.1 9e-08
sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom... 60.1 9e-08
sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop... 57.0 8e-07
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell... 49.7 1e-04
sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methano... 49.7 1e-04
sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex su... 48.9 2e-04
sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog... 48.5 4e-04
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar... 47.8 4e-04
sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subu... 48.1 5e-04
sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex su... 47.8 5e-04
sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosacch... 47.8 6e-04
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac... 47.4 6e-04
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 47.4 6e-04
sp|Q9YFQ8|HELS_AERPE ATP-dependent DNA helicase Hel308 OS=Aeropyr... 47.0 0.001
sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex su... 47.0 0.001
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich... 46.2 0.001
sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment... 45.1 0.001
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=... 46.2 0.001
sp|Q3E7X8|YE077_YEAST Y' element ATP-dependent helicase YEL077C O... 45.8 0.002
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular... 45.4 0.002
sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C OS... 45.4 0.003
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or... 45.4 0.003
sp|P53819|YRF16_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|P0CX15|YRF17_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|P0CX14|YRF13_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor... 45.1 0.003
sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C O... 45.4 0.003
sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C O... 45.4 0.003
sp|P0CX22|YRF18_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|P0CX21|YRF15_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|P0CX20|YRF11_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti... 45.1 0.003
sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot... 45.1 0.003
sp|P40105|YRF12_YEAST Y' element ATP-dependent helicase protein 1... 45.4 0.003
sp|P40434|YIR7_YEAST Y' element ATP-dependent helicase YIL177C OS... 45.4 0.003
sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C OS... 44.7 0.003
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=... 45.1 0.003
sp|P40889|YJW5_YEAST Y' element ATP-dependent helicase YJL225C OS... 45.4 0.003
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi... 45.1 0.003
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar... 45.1 0.003
sp|Q08995|YP204_YEAST Y' element ATP-dependent helicase YPR204W O... 45.1 0.003
sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococ... 45.1 0.003
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar... 45.1 0.003
sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermoc... 45.1 0.003
sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil... 44.7 0.004
sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococ... 45.1 0.004
sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helica... 44.7 0.004
sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex su... 45.1 0.004
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz... 44.7 0.004
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 44.7 0.005
sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex su... 44.7 0.005
sp|A0A023PXF5|YH218_YEAST Putative uncharacterized helicase-like ... 41.2 0.005
sp|Q3E7Y4|YB112_YEAST Putative uncharacterized helicase-like prot... 41.2 0.005
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g... 44.3 0.005
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali... 44.3 0.005
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O... 44.3 0.006
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar... 44.3 0.006
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or... 44.3 0.006
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill... 44.3 0.006
sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 ... 44.3 0.006
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O... 44.3 0.007
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti... 43.5 0.007
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ... 43.5 0.007
sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methano... 43.9 0.007
sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=... 43.9 0.007
sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 O... 43.9 0.008
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil... 43.9 0.008
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc... 43.9 0.008
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ... 43.5 0.009
sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 O... 43.9 0.009
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ... 43.5 0.009
sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 ... 43.9 0.009
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or... 43.9 0.009
sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 O... 43.5 0.009
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell... 43.1 0.010
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti... 43.1 0.010
sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococ... 43.5 0.010
sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methano... 43.5 0.010
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica... 43.5 0.011
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a... 43.1 0.011
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell... 42.7 0.012
sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Or... 43.1 0.013
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g... 43.1 0.013
sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=100... 43.1 0.014
sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid... 42.7 0.014
sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex su... 43.1 0.015
sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Ar... 43.1 0.015
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia... 42.7 0.015
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero... 42.7 0.016
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec... 42.7 0.016
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ... 42.4 0.016
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ... 42.7 0.016
sp|P9WMR1|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tube... 42.7 0.017
sp|P9WMR0|HELY_MYCTO Probable helicase HelY OS=Mycobacterium tube... 42.7 0.017
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom... 42.7 0.018
sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methano... 42.7 0.018
sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragmen... 42.4 0.018
sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ... 42.4 0.018
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar... 42.4 0.018
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec... 42.4 0.019
sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methano... 42.7 0.019
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g... 42.4 0.019
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom... 42.4 0.019
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharom... 42.7 0.020
sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothec... 42.4 0.020
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom... 42.4 0.021
sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Di... 42.7 0.021
sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti... 42.0 0.022
sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot... 42.0 0.022
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym... 42.0 0.022
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe... 42.0 0.022
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or... 42.0 0.023
sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid... 42.0 0.023
sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosac... 42.4 0.024
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica... 42.4 0.024
sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot... 42.0 0.025
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha... 42.4 0.025
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar... 42.4 0.025
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor... 42.0 0.026
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom... 42.0 0.026
sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 ... 42.4 0.028
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell... 42.0 0.028
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a... 42.0 0.029
sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa h... 42.4 0.029
sp|Q5UYM9|HELS_HALMA ATP-dependent DNA helicase Hel308 OS=Haloarc... 42.0 0.029
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin... 41.6 0.030
sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Or... 42.0 0.031
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill... 41.6 0.031
sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Or... 42.0 0.031
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym... 42.0 0.031
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy... 42.0 0.032
sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyos... 42.0 0.033
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ... 41.6 0.033
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich... 41.6 0.033
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich... 41.6 0.033
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin... 41.6 0.036
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich... 41.6 0.036
sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberell... 41.6 0.036
sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 O... 41.6 0.036
sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym... 41.6 0.037
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar... 41.6 0.039
sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot... 41.2 0.040
sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid... 41.2 0.042
sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Ar... 41.2 0.042
sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium lepr... 41.6 0.042
sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio r... 41.2 0.043
sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomiu... 41.2 0.046
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell... 41.2 0.047
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell... 41.2 0.048
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O... 41.2 0.049
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin... 41.2 0.050
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar... 40.8 0.050
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar... 40.8 0.050
sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=960... 41.2 0.054
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell... 40.8 0.055
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O... 41.2 0.055
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor... 41.2 0.056
sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA ... 41.2 0.056
sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomy... 40.8 0.057
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy... 40.8 0.058
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ... 40.8 0.059
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ... 40.8 0.059
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas... 40.8 0.060
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell... 40.8 0.060
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica... 41.2 0.061
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill... 40.8 0.062
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill... 40.8 0.062
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu... 40.8 0.063
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica... 41.2 0.063
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica... 40.8 0.066
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor... 40.4 0.071
sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomy... 40.4 0.073
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro... 40.4 0.078
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac... 40.4 0.080
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill... 40.4 0.081
sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricular... 40.4 0.094
sp|Q0UZ59|DBP9_PHANO ATP-dependent RNA helicase DBP9 OS=Phaeospha... 40.0 0.095
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito... 40.0 0.095
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill... 40.4 0.096
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O... 40.0 0.096
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica... 40.4 0.096
sp|O60072|SLH1_SCHPO RQC trigger complex helicase slh1 OS=Schizos... 40.4 0.097
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica... 40.4 0.11
sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobact... 40.0 0.11
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill... 40.0 0.11
sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom... 39.7 0.12
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell... 39.7 0.12
sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherich... 40.0 0.12
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal... 40.0 0.12
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica... 40.0 0.12
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill... 39.7 0.12
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular... 40.0 0.13
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom... 39.7 0.13
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ... 39.7 0.14
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom... 39.7 0.14
sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherich... 39.7 0.14
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O... 39.7 0.14
sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherich... 39.7 0.15
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy... 39.7 0.15
sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A ... 39.7 0.15
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica... 39.7 0.15
sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorha... 39.7 0.16
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas... 39.7 0.16
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas... 39.7 0.16
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa... 39.3 0.17
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or... 39.3 0.18
sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2 ... 39.3 0.18
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or... 39.3 0.18
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch... 39.3 0.18
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi... 39.3 0.18
sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevi... 39.3 0.18
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas... 39.3 0.18
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill... 39.3 0.19
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill... 39.3 0.19
sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Ar... 39.3 0.20
sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevi... 39.3 0.20
sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwal... 38.9 0.20
sp|P53327|SLH1_YEAST RQC trigger complex helicase SLH1 OS=Sacchar... 39.3 0.20
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc... 38.9 0.21
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ... 38.9 0.21
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f... 38.9 0.21
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym... 38.9 0.21
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha... 39.3 0.22
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ... 38.9 0.22
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin... 39.3 0.22
sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Ricke... 39.3 0.22
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill... 38.9 0.24
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa h... 39.3 0.24
sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricular... 38.9 0.25
sp|Q7RX59|ATM1_NEUCR Iron-sulfur clusters transporter atm1, mitoc... 38.9 0.25
sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Ar... 38.9 0.25
sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Ricke... 38.9 0.28
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell... 38.5 0.28
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi... 38.5 0.28
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers... 38.5 0.29
sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methano... 38.9 0.29
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a... 38.5 0.31
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=... 38.5 0.31
sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella f... 38.5 0.31
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom... 38.5 0.32
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ... 38.5 0.32
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo... 38.5 0.33
sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicu... 38.5 0.34
sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ... 38.5 0.35
sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ... 38.5 0.35
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom... 38.5 0.35
sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG, chl... 38.5 0.35
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ... 38.1 0.36
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy... 38.1 0.37
sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa h... 38.5 0.37
sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa hel... 38.5 0.37
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica... 38.5 0.37
sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergill... 38.1 0.38
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal... 38.1 0.39
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=... 38.1 0.39
sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill... 38.1 0.41
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom... 38.1 0.42
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 38.1 0.43
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 38.1 0.43
sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergill... 38.1 0.43
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 38.1 0.44
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 38.1 0.44
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=... 38.1 0.44
sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartor... 37.7 0.46
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ... 38.1 0.47
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas... 38.1 0.47
sp|E9PZM4|CHD2_MOUSE Chromodomain-helicase-DNA-binding protein 2 ... 38.1 0.47
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo... 37.7 0.48
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas... 38.1 0.48
sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O... 38.1 0.48
sp|Q3IU46|HELS_NATPD ATP-dependent DNA helicase Hel308 OS=Natrono... 38.1 0.49
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica... 38.1 0.50
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom... 37.7 0.51
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ... 37.7 0.51
sp|Q8XIZ5|POTA_CLOPE Spermidine/putrescine import ATP-binding pro... 37.4 0.52
sp|Q0TNZ3|POTA_CLOP1 Spermidine/putrescine import ATP-binding pro... 37.4 0.52
sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 ... 38.1 0.54
sp|Q0SRL2|POTA_CLOPS Spermidine/putrescine import ATP-binding pro... 37.4 0.55
sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurel... 37.7 0.56
sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac... 37.7 0.57
sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospo... 37.7 0.58
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O... 37.7 0.61
sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica... 37.7 0.63
sp|P0DW40|HAMB_BACCE Hachiman protein HamB OS=Bacillus cereus OX=... 37.7 0.63
sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago ... 37.4 0.64
sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa h... 37.7 0.65
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ... 37.4 0.65
sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Ricke... 37.7 0.66
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a... 37.4 0.67
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=... 37.4 0.68
sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB OS=... 37.4 0.71
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy... 37.4 0.71
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy... 37.4 0.71
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=... 37.4 0.71
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=... 37.4 0.71
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ... 37.4 0.72
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica... 37.4 0.74
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica... 37.4 0.74
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=... 37.4 0.75
sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwal... 37.4 0.76
sp|B9DFG3|ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15 c... 37.4 0.77
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar... 37.0 0.79
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or... 37.4 0.81
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica... 37.4 0.81
sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospo... 37.0 0.84
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica... 37.4 0.84
sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Ricke... 37.4 0.84
sp|Q7U9X5|SYK_PARMW Lysine--tRNA ligase OS=Parasynechococcus mare... 37.0 0.85
sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothec... 37.0 0.88
sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosa... 37.4 0.92
sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex su... 37.4 0.92
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ... 37.0 0.93
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil... 37.0 0.95
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas... 37.0 0.96
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer... 37.0 0.96
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O... 36.6 0.96
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O... 37.0 0.99
sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyc... 37.0 1.0
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g... 37.0 1.0
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica... 37.0 1.0
sp|Q2LWA6|MNMA1_SYNAS tRNA-specific 2-thiouridylase MnmA 1 OS=Syn... 36.6 1.0
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers... 37.0 1.1
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica... 37.0 1.1
sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo... 37.0 1.1
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago... 37.0 1.1
sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methano... 37.0 1.1
sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchou... 37.0 1.1
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill... 36.6 1.1
sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill... 36.6 1.1
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica... 37.0 1.1
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym... 36.6 1.2
sp|D3Z4R1|HFM1_MOUSE Probable ATP-dependent DNA helicase HFM1 OS=... 37.0 1.2
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill... 36.6 1.2
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi... 36.6 1.2
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas... 36.6 1.3
sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondri... 36.6 1.3
sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor... 36.6 1.3
sp|Q38861|XPB1_ARATH General transcription and DNA repair factor ... 36.6 1.3
sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberell... 36.6 1.3
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu... 36.2 1.4
sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425 ho... 36.2 1.4
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ... 36.2 1.4
sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus mus... 36.6 1.5
sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Or... 36.6 1.5
sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeospha... 36.2 1.5
sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharom... 36.2 1.6
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=... 36.2 1.6
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo... 36.2 1.6
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or... 36.2 1.7
sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase... 36.2 1.7
sp|D0MYB4|EF3_PHYIT Elongation factor 3 OS=Phytophthora infestans... 36.2 1.7
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar... 36.2 1.8
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro... 36.2 1.8
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica... 36.2 1.8
sp|Q3ANE6|SYK_SYNSC Lysine--tRNA ligase OS=Synechococcus sp. (str... 36.2 1.8
sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D ... 36.2 1.8
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin... 36.2 1.9
sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Ar... 36.2 1.9
sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia ... 35.8 1.9
sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharom... 35.8 1.9
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo... 35.8 1.9
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula... 35.8 2.0
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar... 35.8 2.0
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy... 35.8 2.0
sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida a... 35.8 2.1
sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergill... 35.8 2.1
sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio... 35.8 2.1
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell... 35.8 2.1
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic... 35.8 2.2
sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helica... 35.8 2.2
sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Ricke... 35.8 2.2
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil... 35.8 2.2
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin... 35.8 2.2
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ... 35.8 2.2
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas... 35.8 2.2
sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas... 35.8 2.2
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa... 35.8 2.3
sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase... 35.8 2.3
sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricular... 35.8 2.3
sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill... 35.8 2.3
sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell... 35.8 2.3
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular... 35.4 2.4
sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida g... 35.4 2.4
sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago... 35.4 2.5
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy... 35.4 2.6
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica... 35.8 2.6
sp|D0KN27|HELS_SACS9 ATP-dependent DNA helicase Hel308 OS=Sacchar... 35.4 2.7
sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Or... 35.4 2.8
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.... 35.4 2.8
sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyverom... 35.4 2.8
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ... 35.4 2.9
sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Or... 35.4 2.9
sp|Q4JC00|HELS_SULAC ATP-dependent DNA helicase Hel308 OS=Sulfolo... 35.4 2.9
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or... 35.4 2.9
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or... 35.4 2.9
sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 O... 35.4 3.0
sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo... 35.0 3.0
sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia... 35.0 3.1
sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicas... 35.4 3.1
sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mito... 35.4 3.1
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy... 35.0 3.2
sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula... 35.0 3.2
sp|Q8I912|B1H_LOXLA Dermonecrotic toxin LlSicTox-betaIA1 OS=Loxos... 35.0 3.2
sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425 OS... 35.0 3.2
sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartor... 35.4 3.3
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=... 35.0 3.4
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph... 35.0 3.4
sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar... 35.0 3.4
sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergill... 35.0 3.4
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil... 35.0 3.4
sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Or... 35.0 3.5
sp|F0NDL2|HELS_SULIR ATP-dependent DNA helicase Hel308 OS=Sulfolo... 35.0 3.5
sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc... 35.0 3.5
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha... 35.4 3.5
sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeospha... 35.0 3.5
sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=... 35.4 3.5
sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi ... 35.0 3.6
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or... 35.0 3.6
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil... 35.0 3.6
sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph... 35.0 3.7
sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56 O... 35.0 3.7
sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryoti... 35.0 3.7
sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Scleroti... 35.0 3.7
sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL OS=... 34.7 3.7
sp|Q3B0J9|SYK_SYNS9 Lysine--tRNA ligase OS=Synechococcus sp. (str... 35.0 3.7
sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443... 35.0 3.7
sp|Q97VY9|HELS_SACS2 ATP-dependent DNA helicase Hel308 OS=Sacchar... 35.0 3.7
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp... 35.0 3.8
sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevi... 35.0 3.9
sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia ... 35.0 3.9
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas... 35.0 3.9
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu... 35.0 4.0
sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease... 35.0 4.0
sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomiu... 35.0 4.0
sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O... 35.0 4.0
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O... 35.0 4.0
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill... 35.0 4.0
sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus mus... 35.0 4.1
sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricular... 35.0 4.1
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc... 34.7 4.1
sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil... 34.7 4.2
sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Ar... 35.0 4.2
sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC OS=... 34.7 4.2
sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryz... 35.0 4.3
sp|A0PY57|POTA_CLONN Spermidine/putrescine import ATP-binding pro... 34.7 4.4
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar... 35.0 4.4
sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 ... 35.0 4.4
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell... 34.7 4.6
sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergill... 34.7 4.7
sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27 O... 34.7 4.7
sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericel... 34.7 4.7
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas... 34.7 4.7
sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 ... 35.0 4.8
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a... 34.7 4.8
sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ... 34.7 4.9
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil... 34.7 4.9
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li... 34.7 5.0
sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergil... 34.3 5.1
sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ... 34.7 5.1
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar... 34.7 5.1
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro... 34.7 5.2
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal... 34.3 5.2
sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosarto... 34.3 5.2
sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomy... 34.7 5.2
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers... 34.3 5.3
sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi... 34.7 5.3
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10... 34.7 5.3
sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ029... 34.7 5.3
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy... 34.3 5.4
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab... 34.3 5.4
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa... 34.7 5.4
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X... 34.7 5.5
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste... 34.3 5.5
sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 ... 34.7 5.5
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy... 34.3 5.6
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi... 34.3 5.6
sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g... 34.3 5.6
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu... 34.7 5.8
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas... 34.3 5.9
sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochon... 34.3 5.9
sp|Q18AM3|POTA_CLOD6 Spermidine/putrescine import ATP-binding pro... 34.3 6.0
sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergil... 34.3 6.0
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec... 34.3 6.0
sp|Q0W6L1|HELS_METAR ATP-dependent DNA helicase Hel308 OS=Methano... 34.3 6.1
sp|A9X4T1|CHD1_BOMMO Chromodomain-helicase-DNA-binding protein 1 ... 34.7 6.1
sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy... 34.3 6.1
sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canade... 34.3 6.3
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t... 34.3 6.5
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ... 33.9 6.6
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a... 34.3 6.6
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin... 33.9 6.6
sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi... 33.9 6.7
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom... 33.9 6.7
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom... 33.9 6.7
sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomiu... 34.3 6.7
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell... 34.3 6.8
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha... 34.3 6.8
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica... 34.3 6.9
sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryom... 33.9 6.9
sp|Q03VW4|GLMM_LEUMM Phosphoglucosamine mutase OS=Leuconostoc mes... 33.9 7.0
sp|Q4PH16|ATM1_USTMA Iron-sulfur clusters transporter ATM1, mitoc... 34.3 7.0
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin... 34.3 7.2
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ... 33.9 7.3
sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosac... 34.3 7.3
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill... 33.9 7.4
sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch... 33.9 7.4
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch... 33.9 7.4
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch... 33.9 7.4
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal... 33.9 7.4
sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema... 34.3 7.5
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or... 34.3 7.5
sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo... 33.9 7.6
sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo... 33.9 7.6
sp|O67154|PSTB_AQUAE Phosphate import ATP-binding protein PstB OS... 33.5 7.7
sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyverom... 34.3 7.9
sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try... 33.9 8.0
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila... 33.9 8.0
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy... 33.9 8.0
sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo sa... 33.9 8.3
sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ... 33.9 8.4
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra... 33.9 8.6
sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergill... 33.9 8.7
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac... 33.9 8.7
sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Or... 33.9 8.9
sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18 O... 33.9 9.0
sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a... 33.9 9.3
sp|Q974S1|HELS_SULTO ATP-dependent DNA helicase Hel308 OS=Sulfuri... 33.9 9.3
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus... 33.9 9.3
sp|Q9FUG4|XPB2_ARATH General transcription and DNA repair factor ... 33.9 9.4
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom... 33.9 9.4
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha... 33.9 9.6
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom... 33.5 9.6
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor... 33.5 9.8
sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus mus... 33.9 9.9
sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec... 33.5 9.9
sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericell... 33.5 10.0
>sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor
RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925
Score = 1921 bits (4976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 925/925 (100%), Positives = 925/925 (100%), Gaps = 0/925 (0%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF
Sbjct 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP
Sbjct 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN
Sbjct 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
Query 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP
Sbjct 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI
Sbjct 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI
Sbjct 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT
Sbjct 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR
Sbjct 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
Query 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL
Sbjct 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
Query 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV
Sbjct 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI
Sbjct 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN
Sbjct 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI
Sbjct 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
Query 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE
Sbjct 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
Query 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
Sbjct 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
Query 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
VQTLYSKWKDFHFEKIPFDPAEMSK
Sbjct 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
>sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor
RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Length=926
Score = 1480 bits (3831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/925 (77%), Positives = 804/925 (87%), Gaps = 1/925 (0%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MT EQR++LQAF+DYI+K LDPTYILSYM+ W +EEVQYIQAEKNNKGPMEAA+LFL++
Sbjct 1 MTAEQRQNLQAFRDYIKKILDPTYILSYMSSWLEDEEVQYIQAEKNNKGPMEAASLFLQY 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LL+LQ EGWF+ FLDAL HAGY GL EAIESWDF+KIEKLEE+RLLL+RL+PEFK + P
Sbjct 61 LLKLQSEGWFQAFLDALYHAGYCGLCEAIESWDFQKIEKLEEHRLLLRRLEPEFKATVDP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
DI+S+LSECLINQECEEI QI TKG MAGAEK+ ECL+RSDKENWPK L+LALEK+ +
Sbjct 121 NDILSELSECLINQECEEIRQIRDTKGRMAGAEKMAECLIRSDKENWPKVLQLALEKDNS 180
Query 181 KFSELWIVEKGIKDVETE-DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYS 239
KFSELWIV+KG K E++ D +D E S IQIF QE+PECQNLS+N PPSE S NL+S
Sbjct 181 KFSELWIVDKGFKRAESKADEDDGAEASSIQIFIQEEPECQNLSQNPGPPSEASSNNLHS 240
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
P KPRNYQLELALPA KGKNTIICAPTGCGKTFVSLLICEHHLKKFP GQKGKVVFFANQ
Sbjct 241 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 300
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
IPVYEQQ +VFS+YFER GY + ISGAT+++V V+ I+E+NDIIILTPQILVNNL G
Sbjct 301 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA 360
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
IPSLS+FTLMIFDECHNTSK HPYN IMF YLD KLG S PLPQV+GLTASVGVGDAK
Sbjct 361 IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKT 420
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+EA+ +ICKLCA+LDASVIATV+ N+ ELEQVVYKPQK RKV SR S+ FK II+QLM
Sbjct 421 AEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 480
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
++TE LAK + ++L L QIQNREFGTQKYEQWIV V KAC VFQM DK+EESR+CKALF
Sbjct 481 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALF 540
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
LYTSHLRKYNDALIISE A+M DAL+YLK FF +VR A FDE E++LT+RFEEKL+ELE
Sbjct 541 LYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK 600
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
VSRDPSNENPKL DL +LQEEYHL PET TILFVKTRALVDALK WIE NP LSFLKPG
Sbjct 601 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 660
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
ILTGRG+TN+ TGMTLPAQKC+L+AF+ASGD+NILIATSVADEGIDIA+CNLVILYEYVG
Sbjct 661 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 720
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
NVIKMIQTRGRGRAR SKCFLLTS+A VIEKE+ NM KEK+MN+SILRLQTWDE F +
Sbjct 721 NVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWDEMKFGKT 780
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK 839
+ IQ +EK +RDSQ KP+PVPDKENKKLLC KCK ACYTAD+RV+E HYTVLGDAFK
Sbjct 781 VHRIQVNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRVVETSHYTVLGDAFK 840
Query 840 ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIAT 899
E FV +PHPKPK + +FEK+AKIFCA+QNCSHDWGI V+YKTFEIPVIKIESFVVEDI +
Sbjct 841 ERFVCKPHPKPKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFEIPVIKIESFVVEDIVS 900
Query 900 GVQTLYSKWKDFHFEKIPFDPAEMS 924
GVQ +SKWKDFHFE+I FDPAEMS
Sbjct 901 GVQNRHSKWKDFHFERIQFDPAEMS 925
>sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor
RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1
Length=940
Score = 1478 bits (3827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/930 (79%), Positives = 828/930 (89%), Gaps = 9/930 (1%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MT EQRR+L AF DY+RKTLDPT+ILSYMAPWFR++EVQ+IQAEKNNKGP EAA+LFL+F
Sbjct 1 MTAEQRRNLHAFGDYVRKTLDPTFILSYMAPWFRDDEVQHIQAEKNNKGPTEAASLFLQF 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LLELQEEGWFRGFLDAL+ AGY GL EAIESWDF+KIEKLEEYR LL+RLQPEFKT I P
Sbjct 61 LLELQEEGWFRGFLDALNQAGYCGLCEAIESWDFQKIEKLEEYRSLLRRLQPEFKTTINP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
DI+ +++ECLI+QECEEILQICS+KG+MAGAEK+VECLLRSDKENWPKTLKLALEKE +
Sbjct 121 KDILPEIAECLISQECEEILQICSSKGLMAGAEKMVECLLRSDKENWPKTLKLALEKEES 180
Query 181 KFSELWIVEKGIKDVETEDLED-KMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYS 239
+FSELW+V+KG +DV+ +DLED +M+T D+QIFY+E+PE QNLS+NSC S + YS
Sbjct 181 RFSELWMVDKGAEDVKMKDLEDDEMKTCDVQIFYKEEPENQNLSQNSCSSSA---PHTYS 237
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
P KPR YQLELALPA GKNTIICAPTGCGKTFVSLLICEHHLKKFP+G+KGKVVFFA Q
Sbjct 238 PLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQ 297
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+PVYEQQKSVFSK+FER GY+V GISGAT++ V VEQIVEN+DIIILTPQILVN L GT
Sbjct 298 LPVYEQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT 357
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
IPSLS+FTLMIFDECHNTSKQHPYN+IMF+YLD+KLGGSS LPQVIGLTASVGVGDAKN
Sbjct 358 IPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKN 417
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
EA +YICKLCASLD SVIATV+ NLEELE+VVYKPQKFFRKVE R +D+FK II+QLM
Sbjct 418 KAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 477
Query 480 RDTESLAKRICKDLENLS-----QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ ESLAK I ++L ++ QIQN FGTQKYEQWIV VQK C VFQMPDKD+ESRI
Sbjct 478 MEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 537
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
CKALF Y SHLR YNDALII+EHARMKDALDYLKDFF N+RAAGFDEIEQDLTQRFEEKL
Sbjct 538 CKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEKL 597
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
QELES+S DPSNENPKL DLCFILQEEYHLNPET TILFVKTRALVDALK WI+ NPKLS
Sbjct 598 QELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKLS 657
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
FLKP ILTGRGKTNQN GMTLPAQKC+LD F+ D+ ILI TSVADEGIDIAQCNLVIL
Sbjct 658 FLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVIL 717
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
YEYVGNVIKMIQTRGRGRARGSKCFLLT+NA +I+KE++NMYKE+MMN +IL LQTWDEA
Sbjct 718 YEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKMNMYKEEMMNGAILILQTWDEA 777
Query 775 VFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVL 834
VF+EKI IQ EK IRD+Q KP+PVPDK+ KKLLC+KCKA ACYTAD+R++E+CH+TV+
Sbjct 778 VFKEKIHQIQIREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYTADIRMVEKCHFTVV 837
Query 835 GDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV 894
GDAF+E FVS+ HPKPK F + EKRAKI+CAR +CSHDWGI+V+YK FE+P IKIESFVV
Sbjct 838 GDAFRERFVSKLHPKPKSFGNIEKRAKIYCARPDCSHDWGIYVRYKAFEMPFIKIESFVV 897
Query 895 EDIATGVQTLYSKWKDFHFEKIPFDPAEMS 924
EDIATGVQT+++KWKDF+FEK+ FD AEM+
Sbjct 898 EDIATGVQTVHAKWKDFNFEKLSFDAAEMA 927
>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025
Score = 370 bits (950), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 300/980 (31%), Positives = 463/980 (47%), Gaps = 144/980 (15%)
Query 46 NNKGPMEAATLFLKFLLELQ-EEGWFRGFLDALDHAG--YSGLYEAIESWDFKKIEK--- 99
N G AA L L L + Q GW + F++AL+H+G + Y D
Sbjct 51 NTCGNTSAAELLLSTLEQGQWPLGWTQMFVEALEHSGNPLAARYVKPTLTDLPSPSSETA 110
Query 100 LEEYRLLLKRLQPEFKTRIIPTDIISDLSE-CLINQECEEILQICSTKGMMAGAEKLVEC 158
+E LL LQP +++ D++ E L+ E + G +G +L+
Sbjct 111 HDECLHLLTLLQPTLVDKLLINDVLDTCFEKGLLTVEDRNRISAAGNSGNESGVRELLRR 170
Query 159 LLRSDKENWPKTLKLALEKERNK--FSEL------------------------------- 185
+++ KENW T L + N F EL
Sbjct 171 IVQ--KENWFSTFLDVLRQTGNDALFQELTGGGCPEDNTDLANSSHRDGPAANECLLPAV 228
Query 186 ---------WIVEKGIKDVETEDLEDKMET------SDIQIFYQEDPECQNLSENSCPPS 230
W V+ + + D E+ + F + N+ +S
Sbjct 229 DESSLETEAWNVDDILPEASCTDSSVTTESDTSLAEGSVSCFDESLGHNSNMGRDSGTMG 288
Query 231 EVSD-----TNLYSP---FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
SD T SP + R YQ+E+A PA+ GKN IIC PTG GKT V++ I + HL
Sbjct 289 SDSDESVIQTKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHL 348
Query 283 KKFPQG-QKGKVVFFANQIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
K Q + GKV+ N++ + EQ + F+ Y ++ YR+ G+SG T + ++V++
Sbjct 349 DKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKK-WYRIIGLSGDTQLKISFPEVVKS 407
Query 341 NDIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL 395
D+II T QIL N NL+ G LS F+L+I DECH+T+K+ YN IM YL QKL
Sbjct 408 YDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKL 467
Query 396 GGS--------SGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+ + PLPQ++GLTAS GVG AK EA +I +CA+LDA I TVK NL
Sbjct 468 RNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLG 527
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+L+ + +P K F + + FK + ++M ++ ++ +FGTQ
Sbjct 528 QLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSPMS----------DFGTQ 577
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
YEQW + ++K D + + R+C HLRKYN+AL I++ RM DA +L
Sbjct 578 HYEQWAIQMEKKA----AKDGNRKDRVC------AEHLRKYNEALQINDTIRMIDAYSHL 627
Query 568 KDFFSNVRAAGF------------------------------DEIEQDLTQRFEEKLQEL 597
+ F+++ + F DE ++ L F + + L
Sbjct 628 ETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKKSLKLDETDEFLMNLFFDNKKML 687
Query 598 ESVSRDPSNENPKLEDLCFILQEEYHLNPETI-TILFVKTRALVDALKNWIEGNPKLS-- 654
+ ++ +P EN KL L + E++ + E+ I+F KTR AL WI N K +
Sbjct 688 KKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEV 747
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
+K L G G +++ MT QK ++ F+ +G+ N+LIAT+VA+EG+DI +CN+VI
Sbjct 748 GVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAEEGLDIKECNIVIR 806
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDE 773
Y V N I M+Q RGR RA S L+TS+ +GV E+E +N ++EKMM +I R+Q
Sbjct 807 YGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKMMYKAINRVQNMKP 866
Query 774 AVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLLCRKCKALACYTADVRVIEEC 829
+ KIL +Q EK ++ + K D + LLC+ C L C ++ VIE+
Sbjct 867 EEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITLLCKNCSMLVCSGENIHVIEKM 926
Query 830 HYTVLGDAFKECFVSRPHPK-PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIK 888
H+ + FK ++ R + K+F+ ++ +I C C WG + +K ++P +K
Sbjct 927 HHVNMTPEFKGLYIVRENKALQKKFADYQTNGEIIC---KCGQAWGTMMVHKGLDLPCLK 983
Query 889 IESFVVEDIATGVQTLYSKW 908
I +FVV + Y KW
Sbjct 984 IRNFVVNFKNNSPKKQYKKW 1003
>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025
Score = 367 bits (942), Expect = 2e-110, Method: Compositional matrix adjust.
Identities = 260/750 (35%), Positives = 390/750 (52%), Gaps = 93/750 (12%)
Query 216 DPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL 275
D + +N++ + P E+ + R YQ+E+A PA++GKN IIC PTG GKT V++
Sbjct 290 DSDEENVAARASPEPEL---------QLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAV 340
Query 276 LICEHHL-KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE---RHGYRVTGISGATAEN 331
I + HL KK + GKV+ N++ + EQ +F K F+ + YRV G+SG T
Sbjct 341 YIAKDHLDKKKKASEPGKVIVLVNKVLLVEQ---LFRKEFQPFLKKWYRVIGLSGDTQLK 397
Query 332 VPVEQIVENNDIIILTPQILVN---NLKKGTIPS--LSIFTLMIFDECHNTSKQHPYNMI 386
+ ++V++ DIII T QIL N NL+ G LS F+L+I DECH+T+K+ YN I
Sbjct 398 ISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 457
Query 387 MFNYLDQKLGGSSG--------PLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
M +YL QKL + PLPQ++GLTAS GVG A +A ++I KLCA+LDA
Sbjct 458 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFT 517
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
I TVK NL++L+ + +P K F ++ D FK + ++M ++ + +S
Sbjct 518 IKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQ--------MSP 569
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ +FGTQ YEQW + ++K + + + R+C HLRKYN+AL I++
Sbjct 570 MS--DFGTQPYEQWAIQMEKKA----AKEGNRKERVC------AEHLRKYNEALQINDTI 617
Query 559 RMKDALDYLKDFFSNVRAAGF------------------DEIEQDL--------TQRFEE 592
RM DA +L+ F++ + F DE E DL T RF
Sbjct 618 RMIDAYTHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDEDDLKKPLKLDETDRFLM 677
Query 593 KL-----QELESVSRDPSNENPKLEDLCFILQEEYHLNPETI-TILFVKTRALVDALKNW 646
L + L+ ++ +P EN KL L + E+Y E+ I+F KTR AL W
Sbjct 678 TLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQW 737
Query 647 IEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
I N K + +K L G G +++ MT QK ++ F+ +G N+LIAT+VA+EG+
Sbjct 738 ITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR-TGKINLLIATTVAEEGL 796
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-SNAGVIEKEQINMYKEKMMND 763
DI +CN+VI Y V N I M+Q RGR RA S L+ S +GVIE E +N ++EKMM
Sbjct 797 DIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIEHETVNDFREKMMYK 856
Query 764 SILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK----KLLCRKCKALACY 819
+I +Q + KIL +Q + + K +N LC+ C LAC
Sbjct 857 AIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRNIAKHYKNNPSLITFLCKNCSVLACS 916
Query 820 TADVRVIEECHYTVLGDAFKECFVSRPHPK-PKQFSSFEKRAKIFCARQNCSHDWGIHVK 878
D+ VIE+ H+ + FKE ++ R + K+ + ++ +I C C WG +
Sbjct 917 GEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQINGEIIC---KCGQAWGTMMV 973
Query 879 YKTFEIPVIKIESFVVEDIATGVQTLYSKW 908
+K ++P +KI +FVV + Y KW
Sbjct 974 HKGLDLPCLKIRNFVVVFKNNSTKKQYKKW 1003
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (43%), Gaps = 10/169 (6%)
Query 6 RRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLE-L 64
R + F+ ++ + +L Y+ + E + IQ G M+A L L L + +
Sbjct 12 RYLISCFRARVKMYIQVEPVLDYLT-FLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGV 70
Query 65 QEEGWFRGFLDALDHAG--YSGLYEAIESWDFKKIE---KLEEYRLLLKRLQPEFKTRII 119
GW R F++AL G + Y E D +EY LL LQP +++
Sbjct 71 WHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLL 130
Query 120 PTDIISD-LSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENW 167
D++ + E L+ E + G +G +L++ +++ KENW
Sbjct 131 VRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQ--KENW 177
>sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus
musculus OX=10090 GN=Dhx58 PE=1 SV=2
Length=678
Score = 331 bits (848), Expect = 4e-100, Method: Compositional matrix adjust.
Identities = 232/693 (33%), Positives = 356/693 (51%), Gaps = 50/693 (7%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R YQ E+ LPA++GKN II PTG GKT + + + HL+ +GKVV N++ +
Sbjct 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETV---DRGKVVVLVNRVHLV 60
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL---VNNLKKGTI 360
Q F + ++H + VT +SG + ++D++I T ++L +N+ ++
Sbjct 61 SQHAEEFRRMLDKH-WTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEEDEH 119
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
L F+L++ DECH+T K YN I+ YL+QKL + PLPQV+GLTAS G G A
Sbjct 120 VELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAE-PLPQVLGLTASPGTGGATKL 178
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
A+D+I +LCA+LD I + K+ +L KP K + + R D F +I +LM
Sbjct 179 QGAIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKLM- 237
Query 481 DTESLAKRICKDLE--NLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+I + LE +L Q +FGTQ YEQ +V + K + +E R+
Sbjct 238 ------NQIHQQLEMPDLKQ----QFGTQMYEQQVVQLCKDAAEAGL----QEQRV---- 279
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD--LTQRFEEKLQE 596
Y HLR+YNDAL I + R +DALD L+DF+ R + + L + F++
Sbjct 280 --YALHLRRYNDALFIHDTVRARDALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNV 337
Query 597 L-ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
L + +R P ENPKLE L IL +++ T I+F +TR +L W+ P L
Sbjct 338 LGQLAARGP--ENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQT 395
Query 656 --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+KP +L G G T+Q+T MT Q+ ++ F+ G ++L+ATSVA+EG+DIAQCN+V+
Sbjct 396 VGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFR-DGILSLLVATSVAEEGLDIAQCNVVV 454
Query 714 LYEYVGNVIKMIQTRGRGRARGS-KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
Y + N I M+Q RGR RA S FL T + +++E N E +M ++ +Q D
Sbjct 455 RYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKRELTNEALEVLMEKAVAAVQKMD 514
Query 773 EAVFREKILHIQTHEKFIRDSQEKPKPVPDK----ENKKLLCRKCKALACYTADVRVIEE 828
F+ KI +Q R ++ + + E+ +LLC C Y +D+R +E
Sbjct 515 PDEFKAKIRDLQQASLVKRAARAAHREIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEG 574
Query 829 CHYTVLGDAFKECFVSRPHPK--PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPV 886
H+ + F + + +P K F + I C+ NC WG + YK+ +PV
Sbjct 575 THHVNVNPNFSVYYTTSQNPVVINKVFKDWRPGGTIRCS--NCGEVWGFQMIYKSVTLPV 632
Query 887 IKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919
+KI S ++E +Q KW F FD
Sbjct 633 LKIGSILLETPRGKIQA--KKWSRVPFSIPVFD 663
>sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo
sapiens OX=9606 GN=DHX58 PE=1 SV=1
Length=678
Score = 307 bits (786), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 224/696 (32%), Positives = 363/696 (52%), Gaps = 56/696 (8%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ E+ +PA++GKN II PTG GKT + + + HL+ KVV N++ +
Sbjct 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVHLV 60
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS- 362
Q F + + + VT +SG + +D++I T ++L L T P
Sbjct 61 TQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMAL---TSPEE 116
Query 363 -----LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
L++F+L++ DECH+T K YN+IM YL+ KL + PLPQV+GLTAS G G A
Sbjct 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQ-PLPQVLGLTASPGTGGA 175
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477
D A++++ +LCA+LD I + ++ +L++ +P K + R D F ++ +
Sbjct 176 SKLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKK 235
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
LM +I LE + ++ +R+FGTQ YEQ +V + +A + + +E R+
Sbjct 236 LM-------DQIHDHLE-MPEL-SRKFGTQMYEQQVVKLSEAAALAGL----QEQRV--- 279
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS--NVRAAGFDEIEQDLTQRFEEKLQ 595
Y HLR+YNDAL+I + R DAL L+DF+ +V E+ L F+++
Sbjct 280 ---YALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKN 336
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
EL ++ ENPKLE L ILQ ++ + I+F +TR +L W++ L
Sbjct 337 ELAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQT 395
Query 656 --LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
++ +L G G ++Q+T MT Q+ ++ F+ G N+L+ATSVA+EG+DI CN+V+
Sbjct 396 VDIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVV 454
Query 714 LYEYVGNVIKMIQTRGRGRARGS-KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
Y + N I M+Q RGR RA S F+ T + +++E IN E +M ++ +Q D
Sbjct 455 RYGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMD 514
Query 773 EAVFREKILHIQ-------THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV 825
+A ++ KI +Q + R++Q + PV E+ +LLC C + +D+R
Sbjct 515 QAEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRK 571
Query 826 IEECHYTVLGDAFKECF-VSR-PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFE 883
+E H+ + F + VSR P K F ++ I C +NC WG+ + YK+ +
Sbjct 572 VEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVK 629
Query 884 IPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919
+PV+K+ S ++E +Q KW F FD
Sbjct 630 LPVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD 663
>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1
PE=3 SV=2
Length=1522
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/508 (27%), Positives = 229/508 (45%), Gaps = 63/508 (12%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR+YQ+EL L A K +NTI TG GKT ++ L+ H L+ +G K+ FF
Sbjct 69 PRDYQMELFLRA-KMQNTIAVLDTGTGKTHIATLLLRHVLEEELENRAKGCAHKMAFFLV 127
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN----NDIIILTPQILVN 353
+ + + QQ +V ++ V GISGA +++ +Q + N +I+ T Q+LV+
Sbjct 128 DSVNLVFQQANVLRCGLDQG---VEGISGAMGQSLFQKQTWDKLFAVNMVIVCTAQVLVD 184
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
+ + S+S L+IFDE H+ HPY +M +Y +L S P++ +TAS
Sbjct 185 CMMHSFM-SISRMNLLIFDEAHHAKSNHPYARVMKDYYAHELDTSKR--PRIFAMTASPV 241
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
++ + + +L L + + T L + +P++ V +R+ ++F+
Sbjct 242 DVKGQSAEHVREAARELETLLHSRIATTSDSALA--RNSITRPEEEV-AVYTRLRNEFET 298
Query 474 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
+ Q ++ K L +++ E G +W + M + DE+SR
Sbjct 299 PLHQKVKAKYGDVAPFRK-LFITAKLHASELG-----RW-----ASDMYWSFAFADEQSR 347
Query 534 I--CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
+ Y R ++ A + ++ AR+K+A +++ + + A EQDL+
Sbjct 348 KLQIREELKYNRSKRDWSAAELDAQMARLKEATAFVQQY--EIGAPTLS--EQDLSS--- 400
Query 592 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE--G 649
K+ L + L Y I+FV+ R LK + G
Sbjct 401 ------------------KVMKLQYWLNLYYERTTLARCIVFVEKRHTAQLLKLIFDHIG 442
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
P L +L G ++L +Q L F+ G+ N L ATSVA+EG+DI QC
Sbjct 443 GPNLHC---DVLVGINNRAGEENVSLRSQILTLQKFR-RGELNCLFATSVAEEGLDIPQC 498
Query 710 NLVILYEYVGNVIKMIQTRGRGRARGSK 737
NLV+ ++ +I +Q+RGR R R SK
Sbjct 499 NLVVRFDLYRTMIGYVQSRGRARHRNSK 526
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2
Length=1637
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 236/532 (44%), Gaps = 57/532 (11%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--VVFFANQI 300
PR QL A NTI TG GKT V++++ H ++ G+ + VVF A +
Sbjct 38 PRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPTV 97
Query 301 PVYEQQKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ QQ V +Y + +G S G + E+ V N+I+++TPQIL++ L+
Sbjct 98 HLVHQQFEVIREYTDLDVMMCSGASRVGEWGADHWKEE-VGRNEIVVMTPQILLDALRHA 156
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGVGDA 417
+ ++S +L+IFDECH HPY IM ++ S P V G+TAS V A
Sbjct 157 FL-TMSAVSLLIFDECHRACGSHPYARIM-----KEFYFGSQWRPDVFGMTASPVATKGA 210
Query 418 KNTDEALDYICKLCASLDASV-IATVKHNLEELEQVVYKPQKF-------FRKVESRI-- 467
+I +L +LDA + I ++ LE K+ F ++S++
Sbjct 211 STLHNCEAHISQLELTLDAKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQI 270
Query 468 -SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
SD+F ++ L ES + + KD +N+ + + +Y I ++ +
Sbjct 271 FSDEFDSLLVGLQ---ESPSNKF-KDTDNILETSRKSL--SRYHGKI--------LYSLN 316
Query 527 DKDE--ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
D S + K L D I A + + Y K+ S IE+
Sbjct 317 DLGPIITSEVVKIHIESVKPLCDSEDC--IFSKASLCLHMSYFKEALS--------LIEE 366
Query 585 DLTQRFEEKLQELESVSRDPSNE---NPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
L Q + E L + ES S + + + K+ L I + + + E + ++FV
Sbjct 367 ILPQGYGE-LMKSESGSEELTKRGYISSKVNTLINIFK-SFGSSNEVLCLIFVDRIITAK 424
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
A++ ++ G S LTG G T+++ ++ Q+ LD F+A G N+L T V +
Sbjct 425 AVERFMRGIVNFSCFSISYLTG-GSTSKD-ALSPAVQRFTLDLFRA-GKVNLLFTTDVTE 481
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI 753
EG+D+ C+ VI ++ V +Q+RGR R S+ L+ + ++E I
Sbjct 482 EGVDVPNCSCVIRFDLPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHI 533
>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 144/518 (28%), Positives = 233/518 (45%), Gaps = 76/518 (15%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF-ANQI 300
+ R+YQLE+ ++KG N I+ TG GKT ++LL H L + GK+++F A +
Sbjct 13 RARSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHEL----ENSDGKLIWFLAPTV 67
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENNDIIILTPQILVNNL 355
P+ QQ V S++ R + G+ + EQ ++E +I+ TP +L + +
Sbjct 68 PLCLQQHRVISQHIPAVKSRT--LLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVLHDAM 125
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG-SSGPLPQVIGLTASVGV 414
G + +S L+IFDE H+ ++HP NMIM N+ L G +P+++GLTAS G
Sbjct 126 THGFV-RISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTASAG- 183
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
++ E L I +L+ SV T + + +EL + + P+ R+V +
Sbjct 184 ----SSREGLQTIE---MNLN-SVCTTPQAHRQELLEYTHMPE--LRRV----------L 223
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
LM++ SL + L ++ R+ T Q V KA +FQ E I
Sbjct 224 YTPLMKENASLWEG-----STLQKLLERD-NTYCSGQMKTFVCKAVHIFQ------ELGI 271
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
A + +R + L+ + K LDY DE E + + +
Sbjct 272 WAAEYF----IRASVEELLSHAYVHSKIDLDY-------------DEREYLVNILSKSPV 314
Query 595 QELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+++ S DP + +PK E L L +N + +FV+ RA V + + +P
Sbjct 315 PDIDVHSTDPKDFPVSPKFEALISFLMSTEDINFSGL--IFVEQRAAVTVMSYLLSTHPS 372
Query 653 LS--FLKPGILTGRGKTNQNT--GMTLPA--QKCILDAFKASGDHNILIATSVADEGIDI 706
F + TN+ T G L A Q LD F+ G N+++AT V EGID+
Sbjct 373 TRDRFRTGSFIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRY-GRKNLIVATDVLKEGIDV 431
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN 744
+ C++VI Y IQ RGR R + S ++ S
Sbjct 432 SACSVVICYNIPKGFESFIQRRGRARRQNSTYSMMLST 469
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2
Length=1534
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 142/564 (25%), Positives = 234/564 (41%), Gaps = 85/564 (15%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR YQ+EL K +NTI TG GKT +++L+ H L G+ +V FF
Sbjct 123 PREYQIEL-FERAKAQNTIAVLDTGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFFLV 181
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLK 356
+ + + QQ +V +++ G G + V E+ ++ N +I+ T +IL L
Sbjct 182 DSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILNQCLL 241
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ ++ L+IFDE H+T K HPY I+ D S P++ G+TAS
Sbjct 242 NSHV-RMNQINLLIFDEAHHTKKDHPYARII---RDSYFKASPPQRPRIFGMTAS----P 293
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES--RISDKFKYI 474
+ + +L LD+ + T K L L QVV +P KV + R+ FK
Sbjct 294 IDTKGDIIAAATRLETLLDSRIATTSKITL--LRQVVSRP---IEKVWAYDRLESPFK-- 346
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
NL ++ FG V + F E R
Sbjct 347 -------------------TNLHKLMENRFGN-------VKALEGVFRFAWYASSELGRW 380
Query 535 CK-ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
C +LY A D L L+ + + + E+D+ +
Sbjct 381 CSDRAWLY----------------ALADDVLPKLEGHVNKLAESTAAATERDMAFKEITL 424
Query 594 LQELESVSRD--------PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
++E ++ + P +PK+ L L + + PET I+F + R L
Sbjct 425 IKEASNIVKAHTFNDPEFPGELSPKVRLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHE 484
Query 646 WIEGNPKLSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ L+PG+L G R +T Q L F+ G+ N L ATSVA+EG+
Sbjct 485 LFT-ILSIPHLRPGVLIGVRSGDIGGMNITFRQQFLALVKFR-KGEINCLFATSVAEEGL 542
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM-YKEKMMND 763
DI CNLV+ ++ +I+ +Q+RGR R S + A ++EK+ + + + + +
Sbjct 543 DIPDCNLVVRFDLYHTLIQYVQSRGRARHYHS------TYASMVEKDNSDHEARLREVRE 596
Query 764 SILRLQTWDEAVFREKILHIQTHE 787
+ +Q + E + ++ILH H+
Sbjct 597 AEKTMQNFCETLPEDRILHGNDHD 620
>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 142/563 (25%), Positives = 247/563 (44%), Gaps = 60/563 (11%)
Query 244 RNYQLELALPAMKGKNTIICA-PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
R YQLE+ ++K IICA TG GKT V++L + L++ P+GQ V F + +
Sbjct 64 RAYQLEMLEASLK--ENIICAMDTGSGKTHVAILRIKAELEEMPEGQV--VWFLTPTVSL 119
Query 303 YEQQKSVFSKYFERHGYRVTGISGA----TAENVPVEQIVENNDIIILTPQILVNNLKKG 358
QQ +V ++ ++GA + + + + N +II TPQ+L++ L G
Sbjct 120 CAQQYAVVKAQIPSVQTKI--VTGADKVDSWSSTTWDGALLNVKVIITTPQVLLDALLHG 177
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFN-YLDQKLGGSSGPLPQVIGLTAS----VG 413
+ ++S LM+FDE H+ +K H Y+ +M Y + K P+P+++GLTAS
Sbjct 178 FV-NISSLALMVFDEAHHCNKNHAYSRVMKEFYWESK--TKHEPVPRILGLTASPVVRSD 234
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
+ K + LD +C+ +IA + L ++Y P+ + + S+
Sbjct 235 ISSLKRLESTLDAVCRSPTRHREELIANSQR--PALFSIIYNPK--LQPYAAGFSESLTK 290
Query 474 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
++A A+ LE+ + R + + + ++KA + +D
Sbjct 291 LMA---------ARNKLNILEDPYVVSLRAEISDRSRR---KLEKAIKEKRTYVQDTMKS 338
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
C+ L + ISE R+ A Y + S F + E R
Sbjct 339 FCRRSMEMAKELGAWAADWFISEAIRLFLAGIYRQGASSK----SFRDAEVIFLARV--- 391
Query 594 LQELESVSRDPSNENPKL-EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
Q+ P + L E + I++ + + + I FVK RA L + + +P+
Sbjct 392 FQDANIEPPPPLTTHSGLSEKVQRIIEVLLNYDKDARAICFVKERATTVVLSHILTTHPE 451
Query 653 LSF-LKPGILTGRG--KTNQNTGMTLP---AQKCILDAFKASGDHNILIATSVADEGIDI 706
+S + G + G + + LP +C L+AF+ G N+L+ATSV +EGID+
Sbjct 452 VSSKFRIGTMVGTSFVPGVKRDFLDLPETGGSQC-LEAFR-EGRKNMLVATSVLEEGIDV 509
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSIL 766
CNL+I ++ N+ IQ RGR R R S +L + + E + ++ +
Sbjct 510 PACNLIICFDKPNNLRAFIQRRGRARMRQSHLYLFVEDEAEADWEAL---------EAQM 560
Query 767 RLQTWDEAVFREKILHIQTHEKF 789
+LQ DE E++ I+ E
Sbjct 561 KLQYEDEKREHERLEAIENSEAL 583
>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 145/580 (25%), Positives = 258/580 (44%), Gaps = 68/580 (12%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
S V+ SP++PRNYQLE+ +MK +N I+ TG GKT +++L + L P +
Sbjct 3 SSVTACQGASPYQPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDK 61
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENNDII 344
V F A + + QQ V + R ++G + EQ ++ +I
Sbjct 62 --LVWFLAPTVALCIQQHEVIASNLP--AVRTRTLTGLDKVELWTEQSIWDAVLNGYRVI 117
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSS-GPLP 403
+ T +L + L G + +S L+IFDE H+ +++H N IM ++ L S G +P
Sbjct 118 VSTHAVLADALSHGFV-KMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVP 176
Query 404 QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP---QKFF 460
+++GLTAS V N E L + ++LDA V T + + +EL + ++P Q ++
Sbjct 177 RIMGLTASPVV--RSNHQELL----TVESNLDA-VCRTPRVHRQELVKFTHRPHLQQIWY 229
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ + L E+L D + +++ ++ ++T + C
Sbjct 230 TPTDPAGFKSASQTLGALYHAWETLD---IGDDPYIQRLRKSPLDDTALKKALLTGKTYC 286
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
D I + L + + Y A +K D +++ + + +D
Sbjct 287 REQLRRFVDRSRHIFEELGEWAAEYYIY---------ASIKQLGDRVRNSY---MSGDWD 334
Query 581 EIEQDLTQRFEEKL--QELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETIT-ILFVK 635
E E+ F K+ E++ DP + +PK E L L L+ + ++FVK
Sbjct 335 EAEKAYLVDFLSKIPASEIQLALNDPGSFRISPKFESLLNFLDS---LDEREFSGLIFVK 391
Query 636 TRALVDALKNWIEGNP--KLSFLKPGILTGRGKTNQNTG-------MTLPAQKCILDAFK 686
RA V A+ + + +P + F + G +N + + + Q+ LD F+
Sbjct 392 QRATVSAMTSLLSVHPCTRERFRCAAYV---GWSNGSASKDILGDLLNMQLQRDTLDDFR 448
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL--TSN 744
SG N++IAT V +EGIDI+ C++V+ Y+ N+ +Q RGR R + S ++ T +
Sbjct 449 -SGRKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDD 507
Query 745 AGV-------IEKEQINMYKEKMMN-DSILRLQTWDEAVF 776
A +E+ I Y++ S+ L++ DE V
Sbjct 508 ASADVSKWQDLEQAMIEAYQDDERQLQSVSALESLDEEVM 547
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl1 PE=3 SV=2
Length=1525
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 137/524 (26%), Positives = 222/524 (42%), Gaps = 71/524 (14%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK----FPQGQKGKVVFF-A 297
PR YQLEL K +NTI TG GKT +++L+ +H L+K +G+ ++ FF
Sbjct 117 PREYQLEL-FERAKVQNTIAVLDTGSGKTLIAVLLLKHTLEKELNDRMEGKPHRIAFFLV 175
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLK 356
+ + + QQ +V ++ G G + V +Q + N +I+ T +IL L
Sbjct 176 DSVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSKSVWDQHFQKNMVIVCTAEILNQCLL 235
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
I +S ++IFDE H+T K HPY I+ D L P++ G+TAS
Sbjct 236 NSYI-KMSQINILIFDEAHHTKKDHPYARII---RDSYLEEVYSKRPRIFGMTASPIDTK 291
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK---FFRKVESRISDKFKY 473
DEA +L LD+ + T N+ L QV +P + F K+E
Sbjct 292 GDIVDEA----TRLEKLLDSRIATT--SNMSLLRQVARRPVERVWSFNKLE--------- 336
Query 474 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
+ A + K LE+ FG + + F E R
Sbjct 337 ---------QPFATSLYKHLED-------RFGD-------MACLEGIFRFAWQASSELGR 373
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
C + R D ++ ++ + + SNV + + EI R E
Sbjct 374 WCSD----RAWARALADDVLPKLEGSVRKTAN--SETSSNVPESAYKEI-----LRITEA 422
Query 594 LQELESVSRDPSNENPKLEDLCFILQEE----YHLNPETITILFVKTRALVDALKNWIEG 649
+ ++S + +L +L+EE + ET I+F + R L +
Sbjct 423 SEIVKSYAFSSPETFGQLSPKVQVLREELARYFGRQTETKCIVFTQKRYTALILAELFQ- 481
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGIDIAQ 708
+ FL+PG+L G ++ GM + ++ + K +G+ N L ATSVA+EG+DI
Sbjct 482 TLNIPFLRPGVLIG-VRSGDLAGMNITFRQQFISLVKFRTGEINCLFATSVAEEGLDIPD 540
Query 709 CNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQ 752
CNLV+ ++ +I+ +Q+RGR R S + G +E EQ
Sbjct 541 CNLVVRFDLYQTLIQYVQSRGRARHFNS-TYASMVERGNLEHEQ 583
>sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1
PE=3 SV=2
Length=1591
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 137/510 (27%), Positives = 224/510 (44%), Gaps = 66/510 (13%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR YQ+EL K KNTI TG GKT +++L+ H L QG++ ++ FF
Sbjct 108 PREYQIEL-FERAKQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLV 166
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV-----PVEQIVENNDIIILTPQILV 352
+++ + QQ + + VTG+ G T N+ E++++ ++++ T +IL
Sbjct 167 DKVALVRQQTDHIRANLD---FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILY 223
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
L + + ++S +L++FDE H+ K H Y I+ ++ + P++ G+TAS
Sbjct 224 RCLHRSYL-NISQVSLVVFDEAHHAKKNHVYARIIKDFY--LMEEDCQKRPRIFGMTAS- 279
Query 413 GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 472
D K+T + + SL S IAT+ + + L+ + +PQ+ RK +R+ +
Sbjct 280 -PIDTKDTCISYERATHELESLLHSEIATIS-DRDLLKVIGSRPQE-VRKSYARVLRQ-- 334
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
+TE +C L L + N Q ++ + + A D+
Sbjct 335 -------ENTE-----LCNQLREL--VGNHPLFKQTFD----SAEFAVTELGAWCADKLW 376
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+C + D + AR D + SN R A L Q++
Sbjct 377 ELC-----FREEAVSTLDGRVEGSRARDPDEVGESSHEVSNAREA------LSLVQQWSF 425
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI---LFVKTR---ALVDALKNW 646
E S+S K L IL E + I +FVK R L++AL
Sbjct 426 SPPEDGSLST-------KTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAVLLNALCEQ 478
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
E K+ LK L G G+ T Q+ + F+ G+ N L ATS+A+EG+DI
Sbjct 479 AEIRTKIPDLKGAFLIGAGRGGNAAFTTTRQQEQTVSRFR-DGEINCLFATSIAEEGLDI 537
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
CN+VI ++ G I+ IQ+RGR R R S
Sbjct 538 PGCNVVIRFDLHGTTIQYIQSRGRARMRNS 567
>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 150/587 (26%), Positives = 266/587 (45%), Gaps = 102/587 (17%)
Query 230 SEVSDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK-KFPQ 287
+ +SD +L F PRNYQ E+ +++ +N I+ TG GKT V+LL + L+ + PQ
Sbjct 2 ASLSDQDLEMGLFCPRNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRPQ 60
Query 288 GQKGKVVFF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENN 341
K+++F A + + QQ V +K R ++G + EQ I+++
Sbjct 61 ----KLIWFLAPTVALCFQQHDVITKNLPAVKSRT--LTGQDKVELWTEQAIWDAILKDM 114
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
+++ T +L + + G + +S L+IFDE H+ ++HP N IM ++ L GP
Sbjct 115 QVVVSTHAVLADAMSNGFV-RVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTL-VKQGP 172
Query 402 --LPQVIGLTASVGV----GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 455
+P ++GLTAS V + + ++ ICK T + + +EL ++
Sbjct 173 DAVPGILGLTASPVVRTNSQELSMIESNMNAICK-----------TPRAHRQELLTHTHR 221
Query 456 P---QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN---LSQIQNREFGTQKY 509
P Q ++ V + L+ E++ DLE+ + Q++ F +
Sbjct 222 PHLQQIWYTPVNIDDPTSGTRTLRALIHAWETI------DLEDDPYVKQLRRSTFDGKAL 275
Query 510 EQWIVT------------VQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
++ ++T V+++C +FQ E F++ S +R+ + I +
Sbjct 276 QKALLTRKTYCNESLRRFVERSCHIFQ-----ELGGWAVDYFIHAS-IRRLREK--IDDS 327
Query 558 ARMKD----ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLED 613
A M D +YL F SN+ I+ D +R E+ + PS PKLE
Sbjct 328 ALMLDWDNEEKEYLASFLSNIAT-----IQSDPPRRPEDFI---------PS---PKLEA 370
Query 614 LCFILQEEYHLNPETIT-ILFVKTRALVDALKNWIEGNP--KLSFLKPGILTGRGKTNQ- 669
L L + T + ++F K RA V L + +P K F + G N+
Sbjct 371 LISFLSST---DDSTFSGLIFAKQRATVTVLATLLSVHPLTKDRFRCAAFVGWSGGGNRK 427
Query 670 ---NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+++ Q+ L F+ SG N+++AT V +EGIDI+ C++VI Y+ NV +Q
Sbjct 428 DLIGELLSMQMQRDTLSEFR-SGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQ 486
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
RGR R + S +L S + E ++ K +++ ++++ DE
Sbjct 487 RRGRARRKESTFAILFST----DDELCDLRKWQLLEEAMIEAYQDDE 529
>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica
OX=5116 GN=DCL-1 PE=3 SV=1
Length=1548
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/507 (25%), Positives = 224/507 (44%), Gaps = 68/507 (13%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR+YQ+EL K +NTI TG GKT ++ L+ +H L+ +G ++ FF
Sbjct 99 PRDYQMEL-FERAKQQNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFLV 157
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVN 353
++ + QQ +V + V SG + +N + E ++++I+ T +IL
Sbjct 158 EKVALAFQQHAVLECNL---AHSVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQ 214
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG-PLPQVIGLTASV 412
L+ I + L++FDE H+T K HPY I+ +Y G G LP++ G+TAS
Sbjct 215 CLQYAYI-RIDQINLLVFDEAHHTKKNHPYARIIKDYYAS--GKDRGLRLPRIFGMTASP 271
Query 413 --GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+ D + L+ + + A A + ++++YK + +++ ++ K
Sbjct 272 VDALIDVRQAAIELEGLLHSRIATTADPDALRRAVGRPKKEIIYKYNPLVKPIQTMLTFK 331
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
+ +IA + +++ A S+ RE GT ++ + + ++ K E
Sbjct 332 LRPLIANNKQFSKAFA---------FSEAAARELGTWFVDRMWQLFLEDEELLKLEAKTE 382
Query 531 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 590
S L K A + E R + VR+A
Sbjct 383 RS------------LSKDMAAPEVVEKHR------------NAVRSA------------- 405
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E ++ E +P + KL+ L +L EEY + I+FV+ R L ++ E +
Sbjct 406 RELIRSHEFPKPEPGLLSSKLKTLSKLL-EEYFTDSSIRCIVFVERRWTAKLLTDFFESH 464
Query 651 -PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
++ LK G L G ++ + Q + +FK G+ N + ATSVA+EG+DI C
Sbjct 465 AAEIPGLKVGSLMGANAEGGSSQTSFREQIRTILSFK-KGNTNCIFATSVAEEGLDIPDC 523
Query 710 NLVILYEYVGNVIKMIQTRGRGRARGS 736
NL+I ++ +I+ IQ+RGR R S
Sbjct 524 NLIIRFDICKTMIQYIQSRGRARQADS 550
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis
thaliana OX=3702 GN=At3g03300 PE=1 SV=2
Length=1388
Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 131/538 (24%), Positives = 235/538 (44%), Gaps = 44/538 (8%)
Query 230 SEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
+E +D SP R+YQ+E A+K +NTI+ TG GKT +++++ + F +
Sbjct 10 TETTDQVSASPLHFARSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYAYLFRKP 68
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILT 347
VF Q+ + QQ + + G G ++ +Q V+ +++++T
Sbjct 69 SPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMT 128
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIG 407
P IL++ L+ + SLS+ ++I DECH+ +HPY IM + ++L + +P++ G
Sbjct 129 PAILLDALRHSFL-SLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFG 187
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
+TAS+ +N D I +L +++ V E E V+ F
Sbjct 188 MTASLVKTKGENLDSYWKKIHELETLMNSKVYTC------ENESVLAGFVPFS------- 234
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV-TVQK------AC 520
+ FKY Q ++ + + LE L+ GT V +V+K +
Sbjct 235 TPSFKYY--QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISST 292
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
+ + + D I A S ND+ + E AL +K F S+
Sbjct 293 LTYCLDDLG----ILLAQKAAQSLSASQNDSFLWGELNMFSVAL--VKKFCSDASQEFLA 346
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI-TILFVKTRAL 639
EI Q L + +++ + L+ +C I + + E I I+FV
Sbjct 347 EIPQGLN-------WSVANINGNAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVIT 399
Query 640 VDALKNWI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
L++ + E P + K + G QN T Q I++ F+ G NI++ATS
Sbjct 400 AIVLESLLAEILPNCNNWKTKYVAGNNSGLQN--QTRKKQNEIVEDFR-RGLVNIIVATS 456
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
+ +EG+D+ CNLVI ++ N+ IQ+RGR R + S ++ + ++ + ++ Y
Sbjct 457 ILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKY 514
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
OX=330879 GN=dcl1 PE=3 SV=3
Length=1537
Score = 112 bits (281), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 143/557 (26%), Positives = 242/557 (43%), Gaps = 71/557 (13%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR YQ+EL K +NTI TG GKT +++L+ H L G+ +V FF
Sbjct 126 PREYQIEL-FERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLV 184
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQILVNNLK 356
+ + + QQ +V +++ G G + ++ ++ N +I+ T +IL N
Sbjct 185 DSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDKHLQRNMVIVCTAEIL-NQCL 243
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + L+IFDE H+ K HPY I+ D P+V G+TAS
Sbjct 244 LNSYVRMDQINLLIFDEAHHAKKDHPYARII---RDSYFKAQPSQRPRVFGMTASPIDTK 300
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP-QKFFRKVESRISDKFKYII 475
T+ A +L LD+ + T K L L +VV +P +K + +R+ F +
Sbjct 301 GDITEAA----TRLETFLDSRIATTSKITL--LREVVSRPIEKVW--AYNRLEPPFATEL 352
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ-WIVTVQKACMVFQMPDKDEESRI 534
+LM DT ++ + + + + E G ++ W + + E I
Sbjct 353 YKLM-DTRYGNIKVLEGVYRFAWNASSELGKWCSDRAWWHALADDVL------PKLEGNI 405
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
K L S+ K + + R+++A + +K++F F + E
Sbjct 406 NK---LIESNTMKAEHGAVFKDIIRIREASETVKNYF-------FTDPEL---------- 445
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
P +PK++ L L + ++ T I+F + R L N + +
Sbjct 446 ---------PGELSPKVQRLRMELSKHFNDTTGTKCIVFTQKRYTAKIL-NELFTVLNIP 495
Query 655 FLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
L+PG+L G R +T Q L F+ +G+ N L ATSVA+EG+DI CNLVI
Sbjct 496 NLRPGVLIGVRPGDIGGMNITFRQQFLALVKFR-TGEINCLFATSVAEEGLDIPDCNLVI 554
Query 714 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEK---EQINMYKEKMMNDSILRLQT 770
++ +I+ +Q+RGR R C ++ A ++EK E KE ++I+R
Sbjct 555 RFDLYRTLIQYVQSRGRAR----HC--TSTYAIMVEKDNAEHEGRLKEIREAENIMR--R 606
Query 771 WDEAVFREKILHIQTHE 787
+ E + ++ILH H+
Sbjct 607 FCEILPEDRILHGNDHD 623
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1
Length=1883
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 135/549 (25%), Positives = 233/549 (42%), Gaps = 100/549 (18%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL----ICEHHLKKFPQGQKGKVVFFA 297
+ R YQLE+ L K +NTI TG GKT +++L +C+ LK + +K VF
Sbjct 266 RARQYQLEV-LEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLK---ENKKMLAVFLV 321
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
++P+ Q ++++T QIL+N L+
Sbjct 322 PKVPLVYQ-------------------------------------VLVMTAQILLNILRH 344
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGVGD 416
I + L+I DECH+ K+HPY+++M + P V G+TAS V +
Sbjct 345 SII-KMDAIHLLILDECHHAVKKHPYSLVMSEFYHTT---PKEKRPAVFGMTASPVNLKG 400
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP----------------QKFF 460
+ ++ I L + LD SV+ T+K + +ELE+ V P +
Sbjct 401 VTSQEDCAIKIRNLESKLD-SVVCTIK-DRKELEKHVPMPLEVVVQYDKAATLWSLHEQI 458
Query 461 RKVESRISD---------KFKYIIAQ--LMRDTESLAKRICKDLEN------LSQIQNRE 503
+++ES + + K++++ A+ RD L + + E+ + +++
Sbjct 459 KQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAIN 518
Query 504 FGTQKYEQWIV--TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALI--ISEHAR 559
+ + QW Q Q DE + + S+L+K D L ++E A
Sbjct 519 YALGELGQWCAYKVAQSFLTALQ---NDERANYQVDVKFQESYLKKVVDLLHCQLTEGAA 575
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQ-DLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
MK ++ N +++E+ +L E + E+ + P+++ L IL
Sbjct 576 MKSETSDVE--MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKIL 633
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ Y + I+FV+ L + P LSF++ L G N N M
Sbjct 634 LK-YQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGH---NNNQEMRACQM 689
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC 738
+ + F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+RGR R GS
Sbjct 690 QDTISKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 748
Query 739 FLLTSNAGV 747
L+ +
Sbjct 749 ILMLERGNI 757
>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 133/530 (25%), Positives = 242/530 (46%), Gaps = 58/530 (11%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
S V + + ++ RNYQLE+ +MK +N I+ TG GKT +++L + L P
Sbjct 3 SAVPTNSDAAAYQARNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCP--- 58
Query 290 KGKVVFF-ANQIPVYEQQKSVFSKYFERHGYR-VTGISGAT--AENVPVEQIVENNDIII 345
K+++F A + + QQ V + R +TG+ E + I+++ +++
Sbjct 59 PDKIIWFLAPTVALCTQQHKVIASNLPAVQTRTLTGLDKVELWTEQAIWDAILKDVRVVV 118
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD---QKLGGSSGPL 402
T +L + L G + +S L+IFDE H+ ++H N IM ++ K G S+ +
Sbjct 119 STYAVLADALSHGFM-RMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSA--V 175
Query 403 PQVIGLTASVGVGDAK----NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK-PQ 457
P+++GLTAS V + + LD +CK + ++ H EL+Q++Y+ P
Sbjct 176 PRIMGLTASPVVRSNREELFTIETNLDAVCKTPRAHRQELL-KFSHR-PELKQLLYEPPD 233
Query 458 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY--EQWIVT 515
+V S+ L + + KR+ K + ++ + + EQ
Sbjct 234 PMGLQVSSQTLRALIEAWETLDIEDDPYVKRLRKSSLDGGALEKALMTGKTFCREQLKRF 293
Query 516 VQKACMVFQMPDKDEESRICKALFLYTS--HLR-KYNDALIISEHARMKDALDYLKDFFS 572
V ++ +F+ E ++YTS HL+ + + + + + A YL F S
Sbjct 294 VDRSRHIFE-----ELGEWAADYYIYTSIQHLKTRVQTSYMTGDWDEAERA--YLVSFLS 346
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ AA +I+ L+ ++ +PKLE L L + +PE ++
Sbjct 347 KLPAA---DIQITLSDAACLRI-------------SPKLEALIGFL--DAMDDPEFSGLI 388
Query 633 FVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFK 686
FVK RA V + + + +P+ + G ++ + +++ Q LD F+
Sbjct 389 FVKQRATVSVMTDLLAVHPRTRERFRSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFR 448
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
SG N++IAT V +EGIDI+ C++V+ Y+ N+ +Q RGR R + S
Sbjct 449 -SGHKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGRARQKQS 497
>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/528 (25%), Positives = 234/528 (44%), Gaps = 54/528 (10%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
S VS SP++PRNYQLE+ +MK +N I+ TG GKT +++L + L
Sbjct 3 STVSTCQDASPYQPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDI---CS 58
Query 290 KGKVVFF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENNDI 343
KVV+F A + + QQ V + R ++G + +Q ++ +
Sbjct 59 PDKVVWFLAPTVALCIQQHEVIASNLP--AVRTRTLTGLDKVELWTDQSIWDAVLNGYRV 116
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP-- 401
I+ T +L + L G + +S L+IFDE H+ +++H N IM ++ L SGP
Sbjct 117 IVSTHAVLADALSHGFV-KMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTL-TKSGPAA 174
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP---QK 458
+P+++GLTAS V N E L + ++LDA V T + + +EL + ++P Q
Sbjct 175 VPRIMGLTASPVV--RSNHQELL----MVESNLDA-VCRTPRLHRQELLKFTHRPHLQQI 227
Query 459 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQK 518
++ + + L E+L D + +++ + ++ ++T +
Sbjct 228 WYTPTDPAGFRSASLTLGALYHAWENLD---IGDDPYIQRLRKSPLDDRALKKALLTGKT 284
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
C D I + L + + Y A +K D ++D + +
Sbjct 285 YCREQLRRFVDRSRHIFEELGEWAAEYYIY---------ASIKQLRDRVRDSY---MSGD 332
Query 579 FDEIEQDLTQRFEEKL--QELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETITILFV 634
+DE E+ F K+ ++ DP +PK E L L E ++FV
Sbjct 333 WDEAEKAYLVDFLSKIPTSDIHFALNDPDGFRISPKFESLLNFLDSSDQR--EFSGLIFV 390
Query 635 KTRALVDALKNWIEGNP-KLSFLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFKAS 688
K R V A+ + + +P + G ++ + + + Q+ LD F+ S
Sbjct 391 KQRVTVSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFR-S 449
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
G N++IAT V +EGID++ C++V+ Y+ N+ IQ RGR R + S
Sbjct 450 GRKNLIIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQS 497
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 128/537 (24%), Positives = 239/537 (45%), Gaps = 50/537 (9%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVV-FFANQ 299
F PR YQL++ AM+ +NTI TG GKT +++++ + K GKV+ F A
Sbjct 30 FTPRRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLKKG 358
+ + QQ V + + + G G P ++ + ++++TPQ+ + L+
Sbjct 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
+ L + +LMIFDECH+ + HPY IM + + S P V G+TAS + K
Sbjct 149 FL-ILDMVSLMIFDECHHATGNHPYTRIMKEFYHK-----SEHKPSVFGMTASPVI--RK 200
Query 419 NTDEALD---YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR------ISD 469
LD C+L LDA + + EE+E V ++ R +S+ +S+
Sbjct 201 GISSHLDCEGQFCELENLLDAKIYTV--SDREEIEFCVPSAKEMCRYYDSKPVCFEDLSE 258
Query 470 KFKYIIAQ---LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ-- 524
+ + ++ L+ + ++ + KD +++++ R ++ K C
Sbjct 259 ELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSK--------SIAKICYCLDDV 310
Query 525 -MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
+ E ++IC L++ DA + + + ++ S + F+E
Sbjct 311 GLICASEATKICIERGQEKGWLKEVVDA--TDQQTDANGSRLFAEN--SALHMKFFEEAL 366
Query 584 QDLTQRFEEKLQEL---ESVSRDPSNE---NPKLEDLCFILQEEYHLNPETITILFVKTR 637
+ +R ++ + L ES + + +PKL +L I + + ++FV +
Sbjct 367 HLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFH-SFSNSRHARCLIFVDRK 425
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
+ I+ L+ LTG G+++ + +T QK LD+F+ SG N+L T
Sbjct 426 ITARVIDRMIKKIGHLAHFTVSFLTG-GRSSVD-ALTPKMQKDTLDSFR-SGKVNLLFTT 482
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 754
VA+EGI + +C+ VI ++ +Q+RGR R S+ L+ V + + I+
Sbjct 483 DVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLIS 539
>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1
PE=1 SV=2
Length=834
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 126/529 (24%), Positives = 236/529 (45%), Gaps = 81/529 (15%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + A+ +N ++ PTG GKTF++ ++ ++L+ FP K +VF A P+
Sbjct 74 RDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMMNYLRWFP---KSYIVFMAPTKPLV 129
Query 304 EQQKSVFSKYFERHGYRVTGISGA-TAE---NVPV---EQIVENNDIIILTPQILVNNLK 356
QQ Y++TGI + TAE +VPV Q ++ ++ +TPQ ++N++K
Sbjct 130 TQQMEA--------CYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIK 181
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
G I L+I DE H ++ + Y ++ L S +++ L+A+ G
Sbjct 182 HGICDRTRISCLVI-DEAHRSTGNYAYVEVV------HLLSLSNKNFRILALSATPG--- 231
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE-----SRISDKF 471
L+ I + SL S I N ++ Q V K + F V+ + I D+F
Sbjct 232 -----NKLEAIQNVIDSLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRF 286
Query 472 KYIIAQLMRD-TESLAKRI--CKDLENLSQIQNRE----FGTQKY---EQW-IVTVQKAC 520
I+ +++ + RI KD+ + + +Q ++ Q + ++W I+ A
Sbjct 287 SSILEPMLQKLNKGNYYRIQNAKDITSFTVVQAKQAFLAMSGQNFPANQKWDILNTFDAL 346
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
F P + + + LR+ + + K +++
Sbjct 347 ATFAYP---LNLLLNHGIRPFYQKLREVEEECFVGRSGYKKRIINH-------------- 389
Query 581 EIEQDLTQRFEEKLQELESVSRDPS-NENPKLEDLCFILQE--EYHLNPETITILFVKTR 637
+ + + ++E + RD S +PKLE L I+ E E +T ++FV+ R
Sbjct 390 -------ENYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQTKDTRIMIFVEIR 442
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
+ + + ++ ++P I G+ + GM+ Q + F+ G+ N LIAT
Sbjct 443 SSAEEILRFL--GKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQ-KGEVNTLIAT 499
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNA 745
S+ +EG+DI + +++I Y+ + I+M+Q GR GR R ++L +
Sbjct 500 SIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRG 548
>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812
GN=fml2 PE=3 SV=1
Length=783
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 133/518 (26%), Positives = 232/518 (45%), Gaps = 66/518 (13%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
RNYQ E A+ N ++ PTG GKTF++ ++ ++ + FP+ K++F A P+
Sbjct 112 RNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFPE---SKIIFLAPTKPLL 167
Query 304 EQQKSVFSKYFERHGYRVTGIS-GATA----ENVPVEQIVENND--IIILTPQILVNNLK 356
QQ+ S V G+S GATA E P ++ E N + +TPQ L N+LK
Sbjct 168 LQQRVACSN--------VAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLK 219
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + + SI L IFDE H + H Y +M L S +V+GLTA+ G
Sbjct 220 EHLLDAKSIICL-IFDEAHRATGNHSYAQVMRAVL------RSNSHFRVLGLTATPGSST 272
Query 417 AKNTDEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
A + + +D +I KL + N E ++ Y K + ++ IS + +
Sbjct 273 A-SVQKVVDCLHISKL-----------IVRNEESIDIRSYVFHKKIQLIKVTISSEMNIL 320
Query 475 ---IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
A L R + ++ + L I + Y + V+++K + E+
Sbjct 321 KSDFANLYRPYFNFLRQ-----KKLIPINCECLNIKAYTLF-VSLRKYSFSSKNVQSKEK 374
Query 532 SRI--CKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 588
S+I C L + +H+ D II + ++ + + + S F ++
Sbjct 375 SKIMSCFTLLISCAHITYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFT------SK 428
Query 589 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI----TILFVKTRALVDALK 644
F L+ L + + S +PK+ L +L+E + E ++F + R + +
Sbjct 429 PFAFYLEHLHNKIQGLSLNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYIT 488
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ + ++ + G+ + +TGM QK +D F+A G N L+ATS+ +EG+
Sbjct 489 TTLLAIRPM--VRASLFIGQANSAYSTGMNQMQQKETIDQFRA-GVINTLVATSIGEEGL 545
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
DI +++I Y+ + I+ IQ GR GR + K F+L
Sbjct 546 DIGDTDMIICYDASSSPIRTIQRMGRTGRKKSGKVFVL 583
>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2
PE=3 SV=2
Length=1399
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 138/540 (26%), Positives = 233/540 (43%), Gaps = 73/540 (14%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF-A 297
+PF+ R+YQ E+ +M+ N I TG GKT +++ + + + K+V+F A
Sbjct 7 APFRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAI---DRTRAELEICRPDKIVWFLA 62
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENNDIIILTPQILV 352
+ + EQQ +VF GY + +SG + +Q ++ N I++ T Q+L+
Sbjct 63 PTVTLCEQQFAVFKSNLP--GYGIQLLSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLL 120
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ L G + + +L+IFDE H+ S +HP + IM ++ ++G LP+++GL+AS
Sbjct 121 DALSHGFV-KMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRIGTE---LPRILGLSAS- 175
Query 413 GVGDAKNTDEALDYICK-LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-- 469
+ AK T E L I + LCA+ + T K + EL + V++P D
Sbjct 176 PIKTAKVTSEDLQQIERNLCAT-----VKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQ 230
Query 470 -------KFKYIIAQLMRD---TESLAKR-----ICKDLENLSQIQNREFGTQKYEQWIV 514
K Y L +D +E L +R + K++ + I + + + +
Sbjct 231 SNMLSFLKSAYTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVF-IGGKTYCRDQLRSLAL 289
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNV 574
+ M D R C F H+ +D+ ++ A K L + ++
Sbjct 290 KAEAMSQELGMSVMDWYLRGCITQFSKMVHM---SDSQLLDWSADEKRHLLEILRTLPSI 346
Query 575 RAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ--------EEYHLNP 626
D L KLQ L + +P+ L F+ Q E ++P
Sbjct 347 DLNSHDIPPMSLGS-MSHKLQLLIKFLVAEAKHDPEFTCLVFVEQRVWVACIAEVLAIHP 405
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
ET +L V T G + S K I + NQ + L+ F+
Sbjct 406 ETRDLLRVGT----------FVGESENSKRKANIASISEPRNQ---------QATLENFR 446
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG 746
A G N+++ATSV +EGID++ C+LV+ +E N+ +Q RGR R SK + AG
Sbjct 447 A-GKLNLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKEESKYVIFVPQAG 505
>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1
Length=1538
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 137/557 (25%), Positives = 243/557 (44%), Gaps = 71/557 (13%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR YQ+EL K +NTI TG GKT +++L+ H L G+ +V FF
Sbjct 127 PREYQIEL-FERAKTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFFLV 185
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQILVNNLK 356
+ + + QQ +V +++ G G + ++ ++ N +I+ T +IL N
Sbjct 186 DSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEIL-NQCL 244
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + L+IFDE H+ K HPY I+ D P+V G+TAS
Sbjct 245 LNSYVKMDQINLLIFDEAHHAKKDHPYARII---RDSYFKAQPSQRPRVFGMTASPIDTK 301
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP-QKFFRKVESRISDKFKYII 475
T+ A +L LD+ + T K L L +VV +P +K + +R+ F +
Sbjct 302 GDITEAA----TRLETLLDSRIATTSKITL--LREVVSRPIEKVW--AYNRLESPFATEL 353
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDEE-S 532
+LM DT ++ + + + + E G ++ W +P + S
Sbjct 354 YKLM-DTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDV-----LPKLEGNIS 407
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
++ ++ L H + D + R+++A + +K++ F + E
Sbjct 408 KLVESNTLNAEHGAVFKDII------RIREASETVKNY-------SFADPEL-------- 446
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
P +PK++ L L + + T I+F + R L N +
Sbjct 447 -----------PGELSPKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKIL-NELFTVLN 494
Query 653 LSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
+ L+PG+L G R +T Q L F+ +G+ N L ATSVA+EG+DI CNL
Sbjct 495 IPHLRPGVLIGVRPGDIGGMNVTFRQQFLALVKFR-TGEINCLFATSVAEEGLDIPDCNL 553
Query 712 VILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI-NMYKEKMMNDSILRLQT 770
V+ ++ +I+ +Q+RGR R C ++ A ++EK+ + + K + ++ +Q
Sbjct 554 VVRFDLYRTLIQYVQSRGRAR----HC--TSTYAIMVEKDNAEHEGRLKEIREAEKIMQR 607
Query 771 WDEAVFREKILHIQTHE 787
+ E + ++ILH H+
Sbjct 608 FCETLPEDRILHGNDHD 624
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505
PE=3 SV=2
Length=778
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 131/533 (25%), Positives = 236/533 (44%), Gaps = 76/533 (14%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+ R YQ +A A+K K T+ TG GKT +++L+ L K + GKV+ A
Sbjct 13 LEARLYQQIIAANALK-KKTLCVLSTGLGKTAIAILVIAGILTK----KDGKVLILAPSR 67
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
P+ EQ + + ++ ++G E + + I I TPQ++ N++ G I
Sbjct 68 PLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAE-LYKKGKIFIATPQVIENDIIAGRI 126
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
++ F L+I DE H+T+ H Y + + D+ ++GLTAS G
Sbjct 127 -NVDEFILLIADEAHHTTGDHAYAFVAKKFKDK---------CHILGLTASPG------- 169
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
+D + ++C +L + + E+++ + K + +++ + ++FK + +
Sbjct 170 -SDIDKVMEICENLGIEHVEVRTEDDEDVKPYIAKVKLIPIRID--LPNEFKRALKLI-- 224
Query 481 DTESLAKR--ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
E+L +R I KD ++ I + VT K E + L
Sbjct 225 -NEALKERLKILKDAGVINSIAD------------VT------------KTELIELNNKL 259
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKD-----FFSNVRAAGFDEIEQDLTQRFEEK 593
F Y + KY + SE ++ A + L+ F + + + + +EK
Sbjct 260 FSYDEEV-KYELIKVCSEALKLMHAKELLESQGKSVFLNYINKLSMQRTKSAKSIVNDEK 318
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
++E ++ E+PKL + +++ N + I+F + R V+ + N + N
Sbjct 319 VREAVNLLMKSDVEHPKLGKVVDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQN--- 375
Query 654 SFLKPGILTGR--GKTN-QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
GI R G+ N + GM+ Q ++ FK G ++L++TSV++EGIDI N
Sbjct 376 -----GIKAIRFIGQANKEGKGMSQKEQIEAIERFKKEG--SVLVSTSVSEEGIDIPSVN 428
Query 711 LVILYEYVGNVIKMIQTRGRG-RARGSKCFLLTSNAGVIEK-EQINMYKEKMM 761
+I YE V + I+ IQ RGR R G K ++L + E + +YKE+ M
Sbjct 429 YIIFYEPVPSEIRFIQRRGRAMRGEGGKVYVLIAKGTADEAYYRSALYKEREM 481
>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1
Length=1377
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 133/556 (24%), Positives = 237/556 (43%), Gaps = 98/556 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+KPR YQ E+ ++K +N I+ TG GKT ++LL H L+ G + F +
Sbjct 14 YKPRQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEG--GGPRKLTWFLTPTV 70
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATA-----ENVPVEQIVENNDIIILTPQILVNNL 355
+ QQ V + R I+G ++++++ +++ T +L L
Sbjct 71 ALCLQQYEVIRSHLP--AVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEAL 128
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD---QKLGGSSGPLPQVIGLTASV 412
G + +S L+IFDE H+ ++HP NMIM ++ +K G S +P ++GLTAS
Sbjct 129 THGFV-RISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDS--VPCILGLTASP 185
Query 413 GV----GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
V + K + LD ICK T + + +EL ++P+ + I
Sbjct 186 VVRSKSQEMKTLESNLDSICK-----------TPQVHKQELTTYAHRPE-LLPIICKAID 233
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVT-----------VQ 517
+ Q + A I D + + Q + G+ +Y+ +V V
Sbjct 234 EGPGGRALQALEHAWDTAD-IDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVD 292
Query 518 KACMVF-QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
++ +F ++ + + IC ++ + +R + + + R YL +F S +
Sbjct 293 RSRHIFAELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERA-----YLSNFLSKLPV 347
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETITILFV 634
A E++ +L DP+N +PKL L L + +PE ++FV
Sbjct 348 A---EVQANLA---------------DPNNFTMSPKLAALINFLDK--FDDPEFSGLIFV 387
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA--------------QKC 680
K R V L + +P+ R + GM++ + Q+
Sbjct 388 KQRVTVSVLARLLSLHPQTR--------DRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRG 439
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
+D F+ SG N+++ TSV +EGID+ C +V+ ++ N+ IQ RGR R + S +
Sbjct 440 TMDDFR-SGRKNLIVTTSVLEEGIDVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAI 498
Query 741 LTSNA---GVIEKEQI 753
+ S A G + + QI
Sbjct 499 MFSTADEHGDLRRWQI 514
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1
Length=1657
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 158/570 (28%), Positives = 246/570 (43%), Gaps = 94/570 (16%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQGQKGKVVFFANQIP 301
R YQL+L A++ +N I+ TGCGKT +++L+ HL + P + +F A IP
Sbjct 31 RKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKP--SREVCIFLAPTIP 87
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN----DIIILTPQILVNNLKK 357
+ QQ V + + ++V G +N Q EN+ +++++TPQIL+ +L+
Sbjct 88 LVRQQAVVIASSTD---FKVQCYYG-NGKNSRDHQEWENDMREFEVLVMTPQILLQSLRH 143
Query 358 GTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
I SI L+I DECH+ K+HPY IM + + S P+V G+TAS +G
Sbjct 144 CFIKMNSI-ALLILDECHHAQPQKRHPYAQIMKEFYNSN---SVEKFPRVFGMTASPIIG 199
Query 416 DA------------------------KNTDEALDYICKLCASLDASVIATV-KHNLEELE 450
K L+Y K SL+ + A V + EELE
Sbjct 200 KGVMPSHSFTEKGGRSPCQPLIFFLPKGGSNKLNYT-KCINSLEELLHAKVCSVDNEELE 258
Query 451 QVVYKPQK---FFRKV-ESRIS-------DKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
VV P F+ V S ++ D K +++R + K K L++L ++
Sbjct 259 SVVASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRL 318
Query 500 -QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+N F Q+ + +A F D D+ R L TS H
Sbjct 319 HENIIFCLQELGSF--GALQAARTFLSFDGDKLDRREVDLNGSTSSF----------AHH 366
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV-SRDPSNENPKLEDLCFI 617
+ A L ++ AG ++E+ F K L +V SR EN K C +
Sbjct 367 YLNGATSILSRNKTDGSHAGSFDLEKLEEPFFSNKFSVLINVLSRYGLQENMK----CIV 422
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
+ IT+ RA+ + L+N L F K L G ++N M+
Sbjct 423 FVKR-------ITV----ARAISNILQNL----KCLEFWKCEFLVGCHSGSKN--MSRNK 465
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
I+ F +SG+ N+L+ATSV +EG+DI C LV+ ++ V IQ+RGR R SK
Sbjct 466 MDAIVQRF-SSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSK 524
Query 738 CFLLTSNAGVIEKEQINMY--KEKMMNDSI 765
+L ++ +N Y E +MN+ I
Sbjct 525 YVVLLERENQSHEKLLNGYIAGESIMNEEI 554
>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 133/524 (25%), Positives = 220/524 (42%), Gaps = 75/524 (14%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R YQLE+ ++K +N I+ + +++ + H + G++ F + +
Sbjct 72 RAYQLEMFEASLK-QNIIVALFSD------RVMVADGHWQ---WQDSGRIWFLTPTVALA 121
Query 304 EQQKSVF-SKYFERHGYRVTGISG--ATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
QQ V S+ + G G + +E + ++ N I++ T QIL + +
Sbjct 122 RQQHRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANAHSFV 181
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFN-YLDQKLGGSSGPLPQVIGLTASV----GVG 415
L +L++ DE HN S HP +M YL K G P+P ++GLTAS +
Sbjct 182 -RLDSLSLIVIDEAHNCSGSHPIARLMTEAYLPAKKAGL--PVPSILGLTASPLKSNNLA 238
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
D + ++ LD +C+ T + EEL V +P+ +D +
Sbjct 239 DIEKLEQVLDAVCR-----------TPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDL 287
Query 476 AQLMRDTESLAK-RICKDLENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
+ R E+ + I KD + L + Q E +K Q
Sbjct 288 --MTRFLEAYHRLDISKDPDVLLLKAQRTERAREKLRQ---------------------M 324
Query 534 ICKALFLYTSHLRK-YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF-E 591
I K L LR YN AL++ A YL S++ A + E R+
Sbjct 325 ITKKDTLAQKELRGVYNRALLVRREIGPWAADYYLTRTVSHMLAE-LERGEPPAQHRYIG 383
Query 592 EKLQELE--SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG 649
E L+ + ++S++P +PK++ L +L + + I+FVK R +V + + I
Sbjct 384 EALRSIPIPAISKEPIQLSPKVQTLLKVLASHQQ---DPVGIVFVKERVMVSIVTHIIST 440
Query 650 NP-------KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
+P S + G + GK + MT L+ F+ G N+L+ATSV +E
Sbjct 441 HPLTKDRYRTASMI--GTASVPGKARNHMDMTKKEDMTSLEGFRL-GRFNLLVATSVLEE 497
Query 703 GIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG 746
GID+ CNLVI ++ N+ IQ RGR R S +L+ NA
Sbjct 498 GIDVPICNLVICFDEPSNIKSFIQRRGRAREVSSTLYLMVQNAS 541
>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 141/615 (23%), Positives = 256/615 (42%), Gaps = 99/615 (16%)
Query 237 LYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
+Y +P R YQL +A A+ NT++C PTG GKTFV+ ++ + + FP GKV+F
Sbjct 77 IYPTNRPERPYQLRMARAALFA-NTLLCLPTGLGKTFVAAVVMYNFYRWFP---SGKVLF 132
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + QQ ++ G + ++G T + + ++ + + LTPQI+VN+L
Sbjct 133 LAPTKALVAQQMEACAQLMGIPGRDMAEMTGGT-QALSRRELWASRRVFFLTPQIMVNDL 191
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMI---MFNYLDQKLGGSSGPLPQVIGLTASV 412
+GT P++ + L++ DE H H Y + + Y Q +V+ LTA+
Sbjct 192 SRGTCPAVEVKCLVV-DEAHKALGNHAYCQVVKELSRYTTQF---------RVLALTATP 241
Query 413 GVGDAKNTDEALDYI----CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
G D K + + + +LC S D+ I H ++E++V + ++
Sbjct 242 G-SDTKAVQQVVSNLLIAQIELC-SEDSPEIQPYSHE-RQVEKIVVPLGEELGGIQRAYI 298
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA--------C 520
+ +L++ LA+R L I R+ + V +Q C
Sbjct 299 HVLETFAGRLIK-LGVLARRDVPSLTKYQIILARDQYRKNPSPQNVGMQPGIIEGDFALC 357
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
+ + + ++LF+Y + + L R K+ L +DF
Sbjct 358 ISLYHGYELLQQMGVRSLFIYLCGIMDGSKGLT-----RTKNELGRNEDFM--------- 403
Query 581 EIEQDLTQRFEE--------KLQELESVSRDPSN---ENPKLEDLCFILQEEYH------ 623
+ Q LT F + L + +VS + +PKL+ L I+ E +
Sbjct 404 RLYQQLTDMFSDTCQTSANGNLHKSRTVSENKKEFIYSHPKLKKLEEIVIEHFKSRKMGC 463
Query 624 LNPETITILFVKTRALV-----DALKNWIEGNPKLSFLKPGI----LTGRGKTNQNTGMT 674
+ T V TR ++ D+++ E LS P + G G T
Sbjct 464 SDQTTSGGTCVDTRVMIFSSFRDSVQEIAE---MLSRFSPVVRVMTFVGHSTGKSTKGFT 520
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
Q ++ F+ G +N L++T V +EG+DI + +L+I ++ + I+++Q GR GR
Sbjct 521 QKEQLEVVKRFREGG-YNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQ 579
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
R + ++ + +E+ N S ++ +A+ K+LH H
Sbjct 580 RQGRVVVILAEG----------REERTYNQSQSNRRSIQKAISGNKMLHFYQH------- 622
Query 794 QEKPKPVPDKENKKL 808
P+ +P+ N +L
Sbjct 623 --SPRMIPEGINPEL 635
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 135/609 (22%), Positives = 262/609 (43%), Gaps = 107/609 (18%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQL ++ A+ NT++C PTG GKTF++ ++ + + FP GKVVF A P+
Sbjct 92 RDYQLHISRAALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFP---SGKVVFMAPTKPLV 147
Query 304 EQQKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
QQ + + H +TG + A+ ++I + ++ LTPQ++VN+L +G
Sbjct 148 TQQIEACYQVMGIPQSHMAEMTGSTQASTR----KEIWCSKRVLFLTPQVMVNDLSRGAC 203
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMI---MFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
P+ I L+I DE H + Y + + Y + +++ L+A+ G D
Sbjct 204 PAAEIKCLVI-DEAHKALGNYAYCQVVRELVKYTNHF---------RILALSATPG-SDI 252
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVV-YKPQKFFRKVESRISDKFKYIIA 476
K + + + +I ++ E+ ++ Y ++ K+ + ++ I
Sbjct 253 KAVQQVITNL----------LIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQK 302
Query 477 QLMRDTESLAKRIC-------KDLENLSQIQ---NREFGTQKYEQWIVTVQKA------- 519
++ ES A+ + +D+ NL++ Q R+ + IV +Q+
Sbjct 303 TYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFA 362
Query 520 -CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS--EHARMKDAL---DYLKDFFSN 573
C+ + + ++L+ + + + S E R +D + ++L+ F+
Sbjct 363 ICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHLECMFAR 422
Query 574 VR---AAGFDEIEQ-DLTQRF---EEKLQELESV------SRDPSNENPKLEDLCFILQE 620
R A G I+Q D ++F KL++LE V S + N K D
Sbjct 423 TRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRD------- 475
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
ET ++F R V + + + + ++ G G T Q
Sbjct 476 ------ETRVMIFSSFRDSVQEIAEMLSQHQPI--IRVMTFVGHASGKSTKGFTQKEQLE 527
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCF 739
++ F+ G +N L++T V +EG+DI + +L+I ++ + I+++Q GR GR R +
Sbjct 528 VVKQFRDGG-YNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIV 586
Query 740 LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799
++ S +E++ N S Q+ ++++ I ++ + + Q P+
Sbjct 587 IILSEG----------REERIYNQS----QSNKRSIYKA----ISSNRQVLHFYQRSPRM 628
Query 800 VPDKENKKL 808
VPD N KL
Sbjct 629 VPDGINPKL 637
>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1
PE=3 SV=1
Length=1111
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 125/532 (23%), Positives = 225/532 (42%), Gaps = 79/532 (15%)
Query 242 KPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
K R+YQ +A +G N ++ PTG GKTF++ I L + + +++F A
Sbjct 298 KTRDYQFNIA---QRGLFHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPT 351
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P+ QQ S + + T ++G A + E+ ++ + +TPQ LVN+LK G
Sbjct 352 KPLVAQQISACFQVAGIPRSQTTMLTGEAAPGIRAEEW-KSKRVFFMTPQTLVNDLKSG- 409
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVIGLTASV-G 413
I L++ DE H + + Y ++ +N + L ++ P V + A + G
Sbjct 410 IADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTVESVQAVIDG 469
Query 414 VGDAK---NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+G AK T+++LD I + + D V + +++V + F R ++ + D+
Sbjct 470 LGIAKVEIRTEQSLD-IREYVHARDTEV-----QTFKNSDEMVLCMELFTRTLQPLV-DQ 522
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKD 529
+ + A RD +L FG T+ +QW+ + + K
Sbjct 523 LRNLNAYWGRDPMALTA----------------FGLTKARQQWMGSDAGRNANLGLKGKV 566
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ- 588
A + L KY+ H L F SN + ++ + Q
Sbjct 567 NAIFTVLASLAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQD 617
Query 589 -RFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFV 634
F++ + L+ +++P +PKLE L ++ + E T ++FV
Sbjct 618 ESFKKLMNHLQPWTKNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFV 677
Query 635 KTR----ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
R +V LK + ++P + G+ + GM Q I+ FK G
Sbjct 678 HFRDSAEEVVRVLKRY------EPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGT 730
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+N ++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 731 YNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 782
>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1
PE=3 SV=2
Length=1129
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 129/584 (22%), Positives = 237/584 (41%), Gaps = 77/584 (13%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ D+ + +T I Q ++P Q+ ++ + V TNL K
Sbjct 268 GVRQTSLFDMTSRNQTDQPPIGEQVWSPPQKDEPPTQHKLDHDALSTWVYPTNLG---KT 324
Query 244 RNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
R+YQ +A KG N ++ PTG GKTF++ I L F + +++F A P
Sbjct 325 RDYQFNIA---QKGLFHNLLVALPTGLGKTFIAATIM---LNWFRWTESAQIIFVAPTKP 378
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ QQ S + T ++G A + E+ +N + +TPQ L+N+LK G I
Sbjct 379 LVAQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEW-QNKRVFFMTPQTLINDLKSG-IA 436
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIM--FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
L++ DE H + + Y ++ +Q +V+ LTA+ G
Sbjct 437 DPKRIVLLVVDEAHRATGGYAYVEVVKFLRRYNQSF--------RVLALTATPG------ 482
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ---KFFRKVESRI--SDKFKYI 474
++ + + LD + + ++ + V+ + F+ E + D
Sbjct 483 --STVESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMVLCMDLLSKT 540
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKDEESR 533
+ L+ +L +D L+ FG T+ +QW+ + F + K
Sbjct 541 LQPLVDQLRTLNAYWGRDPMMLT-----AFGLTKSRQQWMASDAGRNAHFGLKGKVNAIF 595
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFE 591
A + L KY+ H L F SN + ++ + Q F+
Sbjct 596 TVLASLAHAIDLLKYHGITPFYRH---------LLHFQSNTEGQKGGKYQRQVVQDESFK 646
Query 592 EKLQELESVSRDPSN-ENPKLEDLCFIL------------QEEYHLNPETITILFVKTRA 638
+ + L+ +++P +PKLE L ++ E T ++FV R
Sbjct 647 KLINHLQPWTKNPEFIGHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRD 706
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ + ++ + ++P + G+ + GM Q I+ FK G +N ++ATS
Sbjct 707 SAEEVTRVLKRYEPM--IRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK-KGTYNTIVATS 763
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 764 IGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 807
>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=mph1 PE=3 SV=2
Length=1124
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 130/558 (23%), Positives = 230/558 (41%), Gaps = 87/558 (16%)
Query 224 ENSCPPSE-----------VSDTNLYSPFKPRNYQLELALPAMKG--KNTIICAPTGCGK 270
E S PP++ V TNL K R+YQ +A KG N ++ PTG GK
Sbjct 294 EKSEPPTQHKLNQEALGTWVYPTNL---GKTRDYQFNIA---QKGLFHNLLVALPTGLGK 347
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG---YRVTGISGA 327
TF++ I L F + ++VF A P+ QQ S FE G + T ++G
Sbjct 348 TFIAATIM---LNWFRWTKDAQIVFVAPTKPLVAQQ---ISACFEVAGIPRSQTTMLTGE 401
Query 328 TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 387
A + E+ + + +TPQ L+N+LK G I L++ DE H + + Y ++
Sbjct 402 AAPGIRAEEW-KAKRVFFMTPQTLINDLKTG-IADPKRIVLVVVDEAHRATGGYAYVEVV 459
Query 388 --FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN 445
+Q +V+ LTA+ G ++ + + LD S +
Sbjct 460 KFLRRYNQSF--------RVLALTATPG--------STVESVQAVIDGLDISRVEIRTEQ 503
Query 446 LEELEQVVYKPQ---KFFRKVESRI--SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
++ + V+ + F+ E + D + L+ S +D L+
Sbjct 504 SLDIREYVHSKDTDVQTFQNSEEMVLCMDLMSKALQPLLDQLRSTNAYWGRDPMGLT--- 560
Query 501 NREFG-TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+G T+ +QW+++ F + K A + L KY+ H
Sbjct 561 --AYGLTKARQQWMLSDSGRNAHFGVKAKMNAIFTVLASLAHGIDLLKYHGITPFYRH-- 616
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQELESVSRDPSN-ENPKLEDLCF 616
L F SN + ++ + Q +++ + L+ +++P +PKLE L
Sbjct 617 -------LLHFQSNTEGQKGGKYQRQVVQDESYKKLMNHLQPWTKNPEFIGHPKLEYLKQ 669
Query 617 IL------------QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
++ +E P T ++FV R + + ++ + ++P + G+
Sbjct 670 VVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEVTRVLKRYEPM--IRPHVFVGQ 727
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ GM Q I+ FK G +N ++ATS+ +EG+DI + +L++ Y+ + I+M
Sbjct 728 SSAKGSEGMGQKTQLDIVQKFK-KGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRM 786
Query 725 IQTRGR-GRARGSKCFLL 741
+Q GR GR R K LL
Sbjct 787 LQRMGRTGRKRSGKITLL 804
>sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster
OX=7227 GN=Dcr-2 PE=1 SV=1
Length=1722
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 133/557 (24%), Positives = 236/557 (42%), Gaps = 109/557 (20%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF--PQGQKGK-VVFFAN 298
KPR YQL L + + N I+ PTG GKTFV++L+ + + F P GK +F N
Sbjct 7 KPRGYQLRL-VDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCN 65
Query 299 QIPVYEQQKSVFSKYFE-RHGYRV--TGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + QQ + + G+ V G+ T E ++ N +++ T Q+ ++ +
Sbjct 66 TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDE--IKKNQVLVGTAQVFLDMV 123
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYN--MIMFNYLDQKLGGSSGPLPQVIGLTAS-- 411
+ T +LS +++I DECH+ + HP+ M +F +Q LP+V+GLT
Sbjct 124 TQ-TYVALSSLSVVIIDECHHGTGHHPFREFMRLFTIANQT------KLPRVVGLTGVLI 176
Query 412 -----------------------VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEE 448
+ V D K + + Y A+ V+ + H
Sbjct 177 KGNEITNVATKLKELEITYRGNIITVSDTKEMENVMLY-----ATKPTEVMVSFPHQ--- 228
Query 449 LEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRDTESL-------AKRICKDLENLSQIQ 500
EQV+ + ++E +S I Q +R ++SL K K L N Q
Sbjct 229 -EQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQ 287
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+E+G I+++ + F + + E+ K + + AL + E R
Sbjct 288 MKEYGIYAASIAIISL---IVEFDIKRRQAETLSVKLM---------HRTALTLCEKIRH 335
Query 561 KDALDYLKD--FFSNVRAAGFDEIEQDLT----QRFEEKLQELESVSRDPSNENPKLEDL 614
+ L+D + + +E+ + + QRF L S+ ++++PK D+
Sbjct 336 L-LVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRF------LMSLKVSFADKDPK--DI 386
Query 615 CFILQEEYHLNPETITILFVKTR----ALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQ 669
C ++FV+ R + L N+I+ P+L + L P + GR +
Sbjct 387 C--------------CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISP 432
Query 670 NTGMTLPA--QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ L QK + F+ G+ N++I +SV +EGID+ CN V + + V +Q+
Sbjct 433 DFESVLERKWQKSAIQQFR-DGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQS 491
Query 728 RGRGRARGSKCFLLTSN 744
+GR R +K L T++
Sbjct 492 KGRARTTEAKFVLFTAD 508
>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 115/530 (22%), Positives = 216/530 (41%), Gaps = 75/530 (14%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
K R+YQ + + N ++ PTG GKTF++ I L + + +++F A P
Sbjct 305 KTRDYQFNITQRGLF-HNLLVALPTGLGKTFIAATIM---LNWYRWTKSSQIIFVAPTKP 360
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ QQ S + T ++G A + E+ + + +TPQ L+N+LK G I
Sbjct 361 LVSQQISACFGIAGIPRSQTTMLTGEAAPGIRAEEW-KAKRVFFMTPQTLINDLKSG-IA 418
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIM--FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
L++ DE H + + Y ++ ++ +V+ LTA+ G
Sbjct 419 DPKRIVLLVVDEAHRATGGYAYVEVVKFIKRYNKSF--------RVLALTATPG------ 464
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
++ + + LD + + ++ + V+ + ++ SD+ +
Sbjct 465 --STVESVQAVIDGLDIAKVEIRTEQSLDIREYVHARNTDVQTFQN--SDEMVLCMDLFS 520
Query 480 RDTESLAKRIC-------KDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKDEE 531
R + L ++C KD L+ FG T+ +QW+++ + + K
Sbjct 521 RTLQPLVDQLCSLNAYWGKDPMALT-----PFGLTKARQQWMLSDAGRNANYGLKGKVNA 575
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--R 589
A + L KY+ H L F SN + ++ + Q
Sbjct 576 IFTVLASLAHAIDLLKYHGITPFYRH---------LVHFRSNTDGQKGGKYQRQIVQDES 626
Query 590 FEEKLQELESVSRDPSN-ENPKLEDLCFILQEEY------------HLNPETITILFVKT 636
F++ + L+ +++P +PKLE L ++ + H T ++F
Sbjct 627 FKKLMNHLQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHF 686
Query 637 R----ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
R +V LK + ++P + G+ + GM Q I+ FK GD+N
Sbjct 687 RDSAEEIVRVLKRY------EPLIRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGDYN 739
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 740 TIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 789
>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2
PE=3 SV=3
Length=1485
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 230/514 (45%), Gaps = 47/514 (9%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R YQLE+ +M+ +N I+ TG GKT V++L L++ P + +V F A + +
Sbjct 66 RAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLRIRAELERTPP--EKRVWFLAPTVALC 122
Query 304 EQQKSVF-SKYFERHGYRVTGISGATA-ENVPV-EQIVENNDIIILTPQILVNNLKKGTI 360
QQ V S+ + +TG + +V + ++ N +++ T IL L +
Sbjct 123 AQQYEVIRSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALSHAFV 182
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFN-YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
SI +L++ DE HN + + P +IM Y+ +K G +P ++GLTAS + +
Sbjct 183 TMDSI-SLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDH--VPHILGLTASPVMKSDLS 239
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ---KFFRKVESRISDKFKYIIA 476
+ E L+ +SLD SV EEL V++P +++ + R ++ +
Sbjct 240 SMEDLE------SSLD-SVCRGPTLQREELFANVHQPTMTVTTYKECDLRSPVQYTRNMN 292
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD-KDEESRIC 535
L E+L I +D L + R + + I+T QM + + S +
Sbjct 293 NLHLAFENL--DIAEDPYVLHLMGQRTPKSLRELDRILTKLDTYTQNQMKALQRKSSSLF 350
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ L + YN +S LD + G+ + EQ R + +
Sbjct 351 RELGQWAVDSYIYNVVEKVSN-------LDARSSWL-----GGWLDDEQRYLHRAIQGIN 398
Query 596 ELESVSRDPSNE--NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
L + P+ E + KL+ L IL+ Y +P + I+FVK RA L + P +
Sbjct 399 ALPVSAAIPAPEMTSIKLQVLLRILRG-YEGSP--VGIVFVKERATAGILSQLLAIIPDI 455
Query 654 SF-LKPGILTGRG-----KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+ K G + G K N + + L+ F+ SG N+L+ATSV +EGID+
Sbjct 456 NARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFR-SGAINLLVATSVLEEGIDVP 514
Query 708 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
CNLVI ++ N+ IQ RGR R R SK L+
Sbjct 515 VCNLVICFDMPANLKSFIQRRGRARMRESKLHLM 548
>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 224/528 (42%), Gaps = 71/528 (13%)
Query 242 KPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
K R+YQ +A +G N ++ PTG GKTF++ I L + + +++F A
Sbjct 288 KTRDYQFNIA---QRGLFHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPT 341
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P+ QQ S + T ++G A + E+ ++ + +TPQ LVN+LK G
Sbjct 342 KPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEW-KSKRVFFMTPQTLVNDLKSG- 399
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVIGLTASVG- 413
I L++ DE H + + Y ++ +N + L ++ P V + A +
Sbjct 400 IADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTVESVQAIIDD 459
Query 414 VGDAK---NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+G AK T+++LD I + + D V + +++V + F R ++ + D+
Sbjct 460 LGIAKVEIRTEQSLD-IREYVHARDTEV-----QTFQNSDEMVLCMELFTRTLQPLV-DQ 512
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKD 529
+ + A RD +L FG T+ +QW+ + + K
Sbjct 513 LRNLNAYWGRDPMALTA----------------FGLTKARQQWMGSDAGRNANLALKGKV 556
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ- 588
A + L KY+ H L F SN + ++ + Q
Sbjct 557 NAIFTVLASLAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQD 607
Query 589 -RFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFV 634
F++ + L+ +++P +PKLE L ++ + E T ++FV
Sbjct 608 ESFKKLMNHLQPWTKNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFV 667
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
R + + ++ + L ++P + G+ + GM Q I+ FK G +N +
Sbjct 668 HFRDSAEEVVRVLKRHEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGTYNTI 724
Query 695 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 725 VATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 772
>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804
GN=mph1 PE=3 SV=1
Length=1101
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 224/528 (42%), Gaps = 71/528 (13%)
Query 242 KPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
K R+YQ +A +G N ++ PTG GKTF++ I L + + +++F A
Sbjct 288 KTRDYQFNIA---QRGLFHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPT 341
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P+ QQ S + T ++G A + E+ ++ + +TPQ LVN+LK G
Sbjct 342 KPLVAQQISACFQVAGIPRSETTMLTGEAAPGIRAEEW-KSKRVFFMTPQTLVNDLKSG- 399
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVIGLTASVG- 413
I L++ DE H + + Y ++ +N + L ++ P V + A +
Sbjct 400 IADPKRIVLLVVDEAHRATGGYAYVEVVKFLKRYNKSFRVLALTATPGSTVESVQAIIDD 459
Query 414 VGDAK---NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+G AK T+++LD I + + D V + +++V + F R ++ + D+
Sbjct 460 LGIAKVEIRTEQSLD-IREYVHARDTEV-----QTFQNSDEMVLCMELFTRTLQPLV-DQ 512
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKD 529
+ + A RD +L FG T+ +QW+ + + K
Sbjct 513 LRNLNAYWGRDPMALTA----------------FGLTKARQQWMGSDAGRNANLALKGKV 556
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ- 588
A + L KY+ H L F SN + ++ + Q
Sbjct 557 NAIFTVLASLAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQD 607
Query 589 -RFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFV 634
F++ + L+ +++P +PKLE L ++ + E T ++FV
Sbjct 608 ESFKKLMNHLQPWTKNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFV 667
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
R + + ++ + L ++P + G+ + GM Q I+ FK G +N +
Sbjct 668 HFRDSAEEVVRVLKRHEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGTYNTI 724
Query 695 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 725 VATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 772
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis
elegans OX=6239 GN=dcr-1 PE=1 SV=3
Length=1910
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 22/226 (10%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS-LLICEHHLKKF-PQGQKGKVVFFA- 297
F PR+YQ+EL A K KNTI+ TG GKTF++ LL+ E+ ++ F P Q GK FF
Sbjct 11 FNPRDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVV 69
Query 298 NQIPVYEQQKSVFSKYFERH-GYRVTGISGATAENV-----PVEQIVENNDIIILTPQIL 351
++ + EQQ + + E H ++V + G T+ + +Q ++ + ++++T Q L
Sbjct 70 EKVNLVEQQ----AIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCL 125
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNT-SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
++ ++ + + ++IFDECH+ QHPY IM +Y KL P+P+V+GLTA
Sbjct 126 LDLIRHAYL-KIEDMCVLIFDECHHALGSQHPYRSIMVDY---KLLKKDKPVPRVLGLTA 181
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 456
S+ + ++ ++ + KL +++D SVI T +L L + KP
Sbjct 182 SL-IKAKVAPEKLMEQLKKLESAMD-SVIETAS-DLVSLSKYGAKP 224
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (31%), Positives = 72/140 (51%), Gaps = 18/140 (13%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL-------KNWIEGNPKLSFLKPGI 660
NP+ + L++ HL+ I+FV R + +L K+W PK F+ P
Sbjct 369 NPEFQKERMKLEKAEHLS----AIIFVDQRYIAYSLLLMMRHIKSW---EPKFKFVNPDY 421
Query 661 L---TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
+ +GR + ++ Q +L F + + N LIATSV +EG+D+ QCNLVI ++
Sbjct 422 VVGASGRNLASSDSQGLHKRQTEVLRRFHRN-EINCLIATSVLEEGVDVKQCNLVIKFDR 480
Query 718 VGNVIKMIQTRGRGRARGSK 737
++ +Q++GR R GS+
Sbjct 481 PLDMRSYVQSKGRARRAGSR 500
>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis
(strain RS) OX=246410 GN=DCL2 PE=3 SV=3
Length=1435
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/260 (32%), Positives = 133/260 (51%), Gaps = 29/260 (11%)
Query 233 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
S L P + R YQLE+ +++ +N I+ TG GKT +++L + L++ P +
Sbjct 37 SQEALLPPRRARGYQLEMLSESLR-QNIIVAMDTGSGKTEIAILRIQRELERCPAHKF-- 93
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVP--VEQIVENNDIIILTPQ 349
V F A + + EQQ S SK R+ TG + + + + I+ N I+I TPQ
Sbjct 94 VWFMAPTVALVEQQHSAISKQLPAFQTRLLTGAANVSHWSTKKIWDDILLNIRIVISTPQ 153
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM--FNYLDQKLGGSSGPLPQVIG 407
+L++ L G + L +L++FDE H+ + P N IM F + ++ G+ G LP ++G
Sbjct 154 VLLDALSNGFV-DLHTISLLVFDEAHHCVRDAPANRIMRDFYHYHRQEEGTDG-LPHILG 211
Query 408 LTASVGVGDAKNTD-EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE-- 464
LTAS A+ TD E L+ +L+A V T K + EE+ Q V+ P+ +R +E
Sbjct 212 LTAS-PTTRARQTDLEVLEI------NLNA-VCVTPKMHREEMMQFVHMPE--YRSIEYQ 261
Query 465 ------SRISDKFKYIIAQL 478
S I +K II +L
Sbjct 262 PDVQNFSSIVEKLSVIINEL 281
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (5%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG----KTNQNTGMTLPA- 677
H+N +I I+F + R +V L + +P+ +K G + + T + P
Sbjct 409 HVN-GSIGIVFAEERTIVIMLAQLLSLHPRTKHIKTTAFLGSSASVSRKSDITELHNPID 467
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
Q +D + +G +++IAT+V +EGID+ C+LVI ++ ++ IQ RGR R +GSK
Sbjct 468 QSTAIDDLR-TGKKDLIIATAVLEEGIDVPICDLVICFDLPKDLRSFIQRRGRARKKGSK 526
Query 738 CFLLTSNAGVIEKEQINMYKEKM 760
L + ++++ ++ M
Sbjct 527 FALFLHSEDRATSSELHLMEKTM 549
>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344
Score = 89.7 bits (221), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 126/521 (24%), Positives = 233/521 (45%), Gaps = 80/521 (15%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + A+ NT++ PTG GKT ++ ++ ++ + FPQG K+VF A P+
Sbjct 118 RDYQFAITKTAL-FSNTLVALPTGLGKTLIAAVVMYNYFRWFPQG---KIVFAAPSRPLV 173
Query 304 EQQKSVFSKYFERHGYRVTGIS-----GATAENVPVEQ--IVENNDIIILTPQILVNNLK 356
QQ + + GI T + P ++ + ++ + +TPQ+L +++
Sbjct 174 MQQIEAC--------HNIVGIPQEWTIDLTGQTCPSKRAFLWKSKRVFFVTPQVLEKDIQ 225
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGVG 415
GT + + L+I DE H + Y +++ + + P+ +++ LTA+ G
Sbjct 226 SGTCLTNYLVCLVI-DEAHRALGNYSYCVVVRELM-------AVPIQLRILALTATPG-- 275
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ +A+ I +D I+T+++ E V P RK+E I
Sbjct 276 ---SKTQAIQGI------IDNLQISTLEYRNESDHDVC--PYVHDRKLE--------VIE 316
Query 476 AQLMRDTESLAKRI-------CKDLENLSQIQNREFGTQKYEQWIVTVQK--ACMVFQMP 526
L +D + ++KR+ L+N NR+ T + ++ K + +P
Sbjct 317 VPLGQDADDVSKRLFHVIRPYAVRLKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLP 376
Query 527 D---KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
D ES C A + H+RK ++S H ++ A + L++ A
Sbjct 377 HVNHGDVES--CFAALITLYHIRK-----LLSSHG-IRPAYEMLEEKLKEGPFARLMSKN 428
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPETI-TILFVKTRALVD 641
+D+ R + L + PS PKL + IL + + + +P+T I+F R V
Sbjct 429 EDI--RMTKLLMQQRLSHGAPS---PKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVR 483
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
+ N + + I GKT + G + Q+ +L+ F+A G N+++ATS+ +
Sbjct 484 DIMNALSNIGDMVKATEFIGQSSGKTLK--GQSQKIQQAVLEKFRAGG-FNVIVATSIGE 540
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
EG+DI + +LVI ++ + ++MIQ GR GR + +L
Sbjct 541 EGLDIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRVVVL 581
>sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1
PE=3 SV=2
Length=1100
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 117/536 (22%), Positives = 218/536 (41%), Gaps = 70/536 (13%)
Query 232 VSDTNLYSPFKPRNYQLELALPAMKG--KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
V TNL K R+YQ + KG N ++ PTG GKTF++ I L F +
Sbjct 302 VYPTNLG---KTRDYQFNIT---QKGLFHNLLVALPTGLGKTFIAATIM---LNWFRWTR 352
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
++VF A P+ QQ S + T ++G A + ++ ++ + +TPQ
Sbjct 353 DAQIVFVAPTKPLVAQQVSACFGVAGIPRSQTTMLTGEAAPGIRAQEW-QDKRVFFMTPQ 411
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM--FNYLDQKLGGSSGPLPQVIG 407
L+N+LK G I L++ DE H + + Y ++ +Q +V+
Sbjct 412 TLINDLKSG-IADPKRIVLLVVDEAHRATGGYAYVEVVKFLRRYNQSF--------RVLA 462
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ---KFFRKVE 464
LTA+ G ++ + + L+ S + ++ + V+ + F+ E
Sbjct 463 LTATPG--------STVESVQAVIDGLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSE 514
Query 465 SRI--SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACM 521
+ D + L+ +L +D L+ +G T+ +QW+++
Sbjct 515 EMVLCMDLLSKTLQPLVDQLRTLNAYWGRDPMALT-----AYGLTKSRQQWMLSDAGRNS 569
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
F + K A + L KY+ H L F N +
Sbjct 570 SFGLKGKVNAIFTVLASLAHGIDLLKYHGITPFYRH---------LLHFQGNTDGQKGGK 620
Query 582 IEQDLTQ--RFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHLNPE----------- 627
++ + Q F++ + L +++P +PKLE L ++ + E
Sbjct 621 YQRQIVQDEHFKKLMNHLSPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQS 680
Query 628 -TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++FV R + + ++ + ++P + G+ + GM Q ++ FK
Sbjct 681 TTRVMIFVHFRDSAEEVARVLKRYEPM--IRPQVFVGQASAKGSDGMNQKTQLGVVQKFK 738
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
G +N ++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R LL
Sbjct 739 -QGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLL 793
>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 137/617 (22%), Positives = 252/617 (41%), Gaps = 77/617 (12%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + A+ KNT++ PTG GKTF++ ++ + + +P KGK+VF A P+
Sbjct 59 RSYQQTIVQSAL-FKNTLVVLPTGLGKTFIAAVVMYNFYRWYP---KGKIVFMAPTRPLV 114
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG----T 359
QQ K ++G E + + + TPQ++ +++ + +
Sbjct 115 SQQIHASQKIMPFPSEDTVQLTGQLPRPKRAE-LWASKRVFFATPQVVHSDMLEADGECS 173
Query 360 IPSLSIFTLMIFDECHNTSKQHPYN-----MIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
P SI L++ DE H ++ Y ++ N + L S+ P G T
Sbjct 174 FPFGSI-KLIVVDEAHRAKGRYAYTQVADCLMARNRYFRMLALSATP-----GRTMEDVA 227
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
+N YI L D S+ + + +V ++ ++ R+ +
Sbjct 228 AVCRNL-----YISNLQVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPY 282
Query 475 IAQLM-----RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
+ QLM + + R E S ++ G Q++ + + M M
Sbjct 283 LRQLMEAEIFKGNKGTVSRNSLLFEQKSFVERSAQG-QRHPDHNIIMGNFAMCISM---- 337
Query 530 EESRICKALFLYTSH-LRKYNDALIISEHARMKDAL---DYLKDFFSNVR----AAGFDE 581
+L L H LR + + + R K L L++ VR A D
Sbjct 338 -----YHSLDLMERHGLRVFVNNFDADDDGREKFVLARDGNLRNLVEQVRQELGANPLDY 392
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+T E+ + D + K E L +L + + NP++ I+F + R V
Sbjct 393 TTHAMTN------GEVPPLPSDLDFGHAKYEKLRQVLVQHFQANPDSRAIVFCEYRESVM 446
Query 642 ALKNWI-EGNPKLSFLKPGILTGRGKT-NQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ + + P L+P G+G T + +T Q I+ F+ SG N+L+ATS+
Sbjct 447 LIHRLLLQHRP---VLRPRCFVGQGSTVGASYALTQKQQLQIMTDFR-SGTSNVLVATSI 502
Query 700 ADEGIDIAQCNLVILYEYVG-NVIKMIQTRGR-GRARGSKCFLLTSNAG--------VIE 749
+EG+D+ + +++ ++ N + IQ GR GR + + +L + +
Sbjct 503 GEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLAN 562
Query 750 KEQINMYKEKMMNDSILRLQTWDE-AVFREKILHIQTHEKFIRD-SQEKPKPVPDKENKK 807
K+QIN +K++N S+++L +++ + EK + ++EKPKP + K+
Sbjct 563 KDQIN---KKLLNSSVVKLSLYEQNPRMVPSKFQPKCEEKHMEPVAEEKPKPKSAAKTKE 619
Query 808 LLCRKCKALACYTADVR 824
RK K T +R
Sbjct 620 --SRKRKQPVAQTGSLR 634
>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl2-2 PE=3 SV=2
Length=1362
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 134/524 (26%), Positives = 218/524 (42%), Gaps = 94/524 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF-ANQ 299
+ R YQLE+ ++K +N I+ PTG GKT V++L L +G K V+
Sbjct 21 LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRI---LADIDKGNSDKFVWLLCPT 76
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLKKG 358
+ + EQQ ++ F G AE+ + + + I + T Q+L + L G
Sbjct 77 VALSEQQYIQYATVFLPSG----------AEDKAIWDNALSGIKIAVSTYQVLYDALSHG 126
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIM-FNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ LS +L+IFDE H+ K H N IM +Y Q G LP+++GLTAS + D
Sbjct 127 FV-KLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQN-LPKILGLTASPILSDL 184
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR---------KVESRIS 468
+ + + S S+ T + +L Q +P R V++ I
Sbjct 185 SSLE--------IVESNLGSICKTPRQYYAQLLQFTNRPLILPRLPTYTIPNCSVKAPIL 236
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQ-IQNREFGTQKYEQWIVT--VQKACMVFQM 525
+K I++ + S +K K L+++ + +Q E Q+ W T ++K+ M F+
Sbjct 237 EKLCGILSS-EDEVPSSSKMKSKQLKHIRRFMQTSESINQELGIWAATEYMRKSIMHFK- 294
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
E R+ A + +Y KDF +
Sbjct 295 ----ESMRMG----------------------AEKTNISNYGKDFAMEI----------- 317
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDAL 643
LT +L +L+ S P+ + ++ +C L +E ++FV RA V AL
Sbjct 318 LT-----RLGKLQDCS--PAIQPEEISPMCQCLLDELSKAYREGFCGLVFVTQRATVLAL 370
Query 644 KNWIEGNPKLSFL-KPGILTGRG-----KTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
K IE +P S L G G KT + Q L+ F+ G N++I T
Sbjct 371 KWLIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETLEKFR-QGSLNLIITT 429
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
+EGID+ CN V+ + ++ IQ RGR R S+ ++
Sbjct 430 DALEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIII 473
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955
GN=dicer1 PE=2 SV=2
Length=1865
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/183 (33%), Positives = 95/183 (52%), Gaps = 12/183 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQ 299
+ PR YQ+EL A++ NTI+C TG GKTF+++L+ + L +G+ GK VF N
Sbjct 32 YTPRKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIK-ELSHQIRGENGKRTVFLVNA 89
Query 300 IPVYEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
QQ S + + G ++ + E + +++EN ++++T I ++ LK G
Sbjct 90 ASSVAQQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQ-VLVMTCHIFLHVLKNG 148
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
+P LS L++FDECH HPY IM K+ P+++GLTAS+ G
Sbjct 149 VLP-LSKINLLVFDECHLAITGHPYREIM------KICEGCPSCPRILGLTASILNGKCD 201
Query 419 NTD 421
D
Sbjct 202 PCD 204
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/123 (31%), Positives = 66/123 (54%), Gaps = 10/123 (8%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGR--GKT---NQNTGMTLPAQKCI 681
I+FV+ R L I+ +P+L+++ +TG GK N+ + Q+ +
Sbjct 431 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEV 490
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 491 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIML 549
Query 742 TSN 744
+
Sbjct 550 ADS 552
>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=MPH1 PE=3 SV=1
Length=1102
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 125/524 (24%), Positives = 213/524 (41%), Gaps = 75/524 (14%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + + NT++ PTG GKTF++ + L F + ++VF A P+
Sbjct 141 RDYQFSIVKNGL-FNNTLVALPTGLGKTFIAATVI---LNFFRWTRNAQMVFVAPTKPLA 196
Query 304 EQQKSVFSKYFERHGYRVTGISGA-----TAENVPV--EQIVENNDIIILTPQILVNNLK 356
QQ + GI + T E PV E E + +TPQ L+N+L
Sbjct 197 SQQVEAC--------LNIAGIPRSQSTLLTGETKPVLREAEWEGKRLFFMTPQTLMNDLS 248
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVIGL--- 408
KG I L++ DE H + + Y ++ F+ + L ++ P V G+
Sbjct 249 KGYADPKRI-VLLVVDEAHRATGDYAYVKVIEFIRRFSKSFRVLALTATPGSTVEGVQDV 307
Query 409 TASVGVGDAK-NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
++GV + T+E++D I H+ E+++VV +P RI
Sbjct 308 IDNLGVSHVEIRTEESID-------------IRNYVHS-REIDRVVLEPSDEML----RI 349
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ-WIVTVQKACMVFQMP 526
S+ F + L I +D +++ FG K Q W+ + P
Sbjct 350 SELFSQALKPLHSKISQQKIYIGRDPMSITT-----FGLLKARQDWM----------KGP 394
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
+ + L + L+ A+ + + ++ D L F S G +
Sbjct 395 GRFANQGLKMMLMAIFTILQSLAHAIKLLNYHGIRPFYDNLVAFRSETEDKGQKGSKYKR 454
Query 587 TQRFEEKLQELESVSR-----DPSNENPKLEDLCFILQEEYHLNPE---TITILFVKTRA 638
E+ QE+ ++ D +PKL LC L + E T I+F + R
Sbjct 455 QLIGEQSFQEMMDLASKWLKIDGFAGHPKLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRD 514
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ + + N + + G+ + ++ GM Q + F+ G N+L+ATS
Sbjct 515 SAEEITRVL--NVHKPMISASLFVGQADSKKSEGMKQKQQIETIAKFR-DGIFNVLVATS 571
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+ +EG+DI Q +L+I Y+ + I+M+Q GR GR R K LL
Sbjct 572 IGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKRAGKITLL 615
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/193 (31%), Positives = 96/193 (50%), Gaps = 20/193 (10%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C +G GKTF+++L+ + + ++ + VF
Sbjct 32 YTPRKYQVEL-LEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLV 90
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI----VENNDIIILTPQILVN 353
N QQ S + + +V S ++ E + ++++T I +N
Sbjct 91 NSEKQVSQQVSAVRTHTD---LKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLN 147
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV- 412
LK G + SLS L++FDECH + HPY IM K+ S P P+++GLTAS+
Sbjct 148 VLKSGNV-SLSNINLLVFDECHLAIQDHPYREIM------KICESCQPCPRILGLTASIL 200
Query 413 -GVGDAKNTDEAL 424
G D ++ +E +
Sbjct 201 NGKCDPRDLEEKI 213
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/145 (29%), Positives = 76/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-----KTNQNTGMTLPAQKCI 681
I+FV+ R L I+ +P+L+++ +TG G N+ + Q+ +
Sbjct 436 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEV 495
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 496 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIML 554
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ + +E + YK EK++ +
Sbjct 555 ADSDKIKAFEEDLKTYKAIEKILRN 579
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 97/199 (49%), Gaps = 14/199 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C TG GKTF+++L+ + H ++ + + VF
Sbjct 42 YTPRKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV--GV 414
G + SLS L++FDECH HPY IM KL S P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTASILNGK 213
Query 415 GDAKNTDEALDYICKLCAS 433
D + +E + + K+ S
Sbjct 214 CDPEELEEKIQKLEKILKS 232
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCI 681
I+FV+ R L I+ +P+L+++ +TG G NQ + A Q+ +
Sbjct 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEV 504
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATSV +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 505 LRKFRAH-ETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ +E + YK EK++ +
Sbjct 564 ADTDKIQSFEEDLKTYKAIEKILRN 588
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/236 (29%), Positives = 113/236 (48%), Gaps = 13/236 (6%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH--HLKKFPQGQKGKVVFFANQIP 301
R YQ+EL A + +N I+ TGCGKT +++++ HL P+ K +F A +
Sbjct 125 RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGHLVLSPK--KSVCIFLAPTVA 181
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ EQQ V + G + E+ + N+++++TPQIL++NL+ I
Sbjct 182 LVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEVLVMTPQILLHNLQHCFI- 240
Query 362 SLSIFTLMIFDECHNTSKQ--HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ +L+IFDECH+ +Q HPY IM + + S P++ G+TAS VG
Sbjct 241 KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSE----SLQRPRIFGMTASPVVGKGSF 296
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
E L +L + + +V+ N+ +L+ V P S +SD + I
Sbjct 297 QSENLSKSINSLENLLNAKVYSVESNV-QLDGFVSSPLVKVYYYRSALSDASQSTI 351
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/143 (31%), Positives = 64/143 (45%), Gaps = 5/143 (3%)
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
+ L P I+FV L + L K L G ++ M+ + + I
Sbjct 483 FRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKS--MSRRSMETI 540
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+ S + N+L+AT V +EG+DI C LVI Y+ V IQ+RGR R S+ L
Sbjct 541 LKRFQ-SKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFL 599
Query 742 TSNAGVIEKEQINMYK--EKMMN 762
+ E + I +K E MN
Sbjct 600 VDSGNEKEMDLIENFKVNEDRMN 622
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
Length=1523
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/245 (29%), Positives = 113/245 (46%), Gaps = 30/245 (12%)
Query 228 PPSEVSDTNLYSP-------FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
P +E+S +L + PR YQ+EL K +NTI TG GKT +++L+ +H
Sbjct 94 PDAELSTASLVAKQDAGTGMLDPREYQVEL-FERAKSQNTIAVLDTGSGKTLIAVLLLKH 152
Query 281 ----HLKKFPQGQKGKVVFF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
L G+ ++ FF + + + QQ +V +++ V GA ++ +
Sbjct 153 IIQNELIDRANGKPPRISFFLVDSVTLAFQQAAVLRNNLDQN---VAQFFGAMGTDLWSK 209
Query 336 QI----VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 391
Q ENN +I+ T +IL L I + L+IFDE H+T K HPY I+
Sbjct 210 QTWDHQFENNMVIVCTAEILNQCLLNSYI-RMDQINLLIFDEAHHTKKDHPYARII---R 265
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
+ L P++ G+TAS + ++ KL LD+ + T K NL L +
Sbjct 266 ESYLKADPTKRPRIFGMTAS----PIDTKGDIIESATKLEVLLDSKIATTSKPNL--LRE 319
Query 452 VVYKP 456
VV +P
Sbjct 320 VVRRP 324
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 94/181 (52%), Gaps = 10/181 (6%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P +PK++ L L + + +T I+F + R L + ++ +L+PG+L G
Sbjct 435 PGELSPKVQLLRQKLIKYFEHPTKTKCIVFTQKRYTAKMLFDLF-STLEIPYLRPGVLIG 493
Query 664 RGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
++ GM + ++ L K SG+ N L ATSVA+EG+DI CNLV+ ++ +I
Sbjct 494 V-RSGDIVGMNVSFRQQFLALVKFRSGEINCLFATSVAEEGLDIPDCNLVVRFDLYNTLI 552
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM-MNDSILRLQTWDEAVFREKIL 781
+ +Q+RGR R S + A +IE+ + + + ++ +Q++ E + ++IL
Sbjct 553 QYVQSRGRARHSSS------TYASMIERYNADHAARLVEVREAEKLMQSFCETLPEDRIL 606
Query 782 H 782
H
Sbjct 607 H 607
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 4/158 (3%)
Query 603 DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
D ++ K+ L +L+ Y + T++FV+ +A L +++ L ++
Sbjct 337 DSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLSLFMK-TLNLPNIRAHSFI 395
Query 663 GRGKTNQNT-GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G G ++Q MT QK L FK +G +N+LIAT+VA+EGID+ CNLVI + V
Sbjct 396 GHGPSDQGEFSMTFRRQKDTLHKFK-TGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTV 454
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ +Q+RGR RA SK + + ++ E+I +++EK
Sbjct 455 TQYVQSRGRARAMASKFLIFLNTEELLIHERI-LHEEK 491
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/186 (27%), Positives = 93/186 (50%), Gaps = 13/186 (7%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV------VFFA 297
R YQ ++ A K +NT++ TG GKT +++ + + L++ Q+ + VF
Sbjct 13 RKYQQDVYNIASK-QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLV 71
Query 298 NQIP-VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
N++P V++Q + + S+ + G +S +E + I++ N +I++T + L
Sbjct 72 NKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYN-VIVITADLFYLFLA 130
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK---LGGSSGPLPQVIGLTASVG 413
+G + S++ L+IFDECH+ Y IM ++ + L LP++ G+TAS
Sbjct 131 RGFL-SINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPF 189
Query 414 VGDAKN 419
G N
Sbjct 190 TGKKGN 195
>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2
Length=1519
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/224 (30%), Positives = 101/224 (45%), Gaps = 17/224 (8%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF 296
PR YQ+EL K +NTI TG GKT +++L+ +H L G ++ FF
Sbjct 107 LNPREYQIEL-FERAKVQNTIAVLDTGSGKTLIAVLLLKHVIQTELIDRANGNPPRISFF 165
Query 297 -ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNN 354
+ + + QQ SV +++ G G N + E N +I+ T +IL
Sbjct 166 LVDSVTLVYQQASVLRNNLDQNVAHFFGAMGVDLWNKQTWAEHFEKNMVIVCTAEILNQC 225
Query 355 LKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
L I ++ L++FDE H+T K HPY I+ D L P++ G+TAS
Sbjct 226 LLNAYI-TMQQINLLVFDEAHHTKKDHPYARII---RDSYLRVPPSSRPRIFGMTAS--- 278
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 458
+ L+ L A LD+ + T K L L QVV +P +
Sbjct 279 -PVDTKGDVLEAARNLEALLDSKIATTSK--LTILRQVVNRPNE 319
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/208 (29%), Positives = 103/208 (50%), Gaps = 23/208 (11%)
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGIDIAQCNLVIL 714
L+PG+L G +++ GM + ++ IL + +G+ N L AT+VA+EG+DI CNLV+
Sbjct 480 LRPGVLIGV-RSSDRIGMNVTFRQQILTMVRFRTGEINCLFATAVAEEGLDIPDCNLVVR 538
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMM---NDSILRLQTW 771
++ +I+ +Q+RGR R S + A +IEK+ N E ++ ND+ +Q++
Sbjct 539 FDLYKTLIQYVQSRGRARHADS------TYASMIEKD--NADHESILVQVNDAEKIMQSF 590
Query 772 DEAVFREKILHIQ---THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR---- 824
+ + ++ILH T R+ E+P +P + LA Y + ++
Sbjct 591 CQLLPEDRILHGNDDDTDAVLDREEWEEPYTLPSTAARLTHHSAITVLARYASSLQYEND 650
Query 825 VIEECHYTVL--GDAFKECFVSRPHPKP 850
+ Y VL DA+ C V P P
Sbjct 651 TSAQVTYVVLPVNDAYV-CEVILPEKSP 677
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/179 (32%), Positives = 86/179 (48%), Gaps = 12/179 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C TG GKTF+++L+ + H ++ + VF
Sbjct 42 YTPRKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + + LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
G + SLS L++FDECH HPY IM KL S P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTASILNG 212
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCI 681
I+FV+ R L I+ +P+L+++ +TG G NQ + A Q+ +
Sbjct 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEV 504
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATSV +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 505 LRKFRAH-ETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ +E + YK EK++ +
Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis
thaliana OX=3702 GN=DCL1 PE=1 SV=2
Length=1909
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/221 (29%), Positives = 112/221 (51%), Gaps = 10/221 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH-HLKKFPQGQKGKVVFFANQI 300
+ R YQL++ L K KNTI TG GKT +++L+ + H Q +K VF ++
Sbjct 248 QARRYQLDV-LEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKV 306
Query 301 P-VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P VY+Q + + ++ + G+ + ++ ++ E+ ++++T QIL+N L+
Sbjct 307 PLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSI 366
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGVGDAK 418
I + L+I DECH+ K+HPY+++M + P + G+TAS V +
Sbjct 367 I-RMETIDLLILDECHHAVKKHPYSLVMSEFYHTT---PKDKRPAIFGMTASPVNLKGVS 422
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 459
+ + I L LD S + T+K + +ELE+ V P +
Sbjct 423 SQVDCAIKIRNLETKLD-STVCTIK-DRKELEKHVPMPSEI 461
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 83/182 (46%), Gaps = 12/182 (7%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
PK++ L +L + Y + I+FV+ L P LSF++ + G N
Sbjct 647 PKVQSLIKLLLK-YQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGH---N 702
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ M + + F+ G +L+ATSVA+EG+DI QCN+V+ ++ V+ IQ+R
Sbjct 703 NSQEMKSSQMQDTISKFR-DGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSR 761
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
GR R GS L+ V + ++ LR EA+ R + H++ +
Sbjct 762 GRARKPGSDYILMVERGNV---SHAAFLRNARNSEETLR----KEAIERTDLSHLKDTSR 814
Query 789 FI 790
I
Sbjct 815 LI 816
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/144 (31%), Positives = 80/144 (56%), Gaps = 6/144 (4%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQL+++ A+ NT++C PTG GKTF++ ++ + + FP GKVVF A P+
Sbjct 80 RDYQLDISRSALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFP---SGKVVFMAPTKPLV 135
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ + ++G+T + V ++I + ++ LTPQ++VN+L +G +P+
Sbjct 136 TQQMEACFHVMGIPQSHMAEMTGST-QAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT 194
Query 364 SIFTLMIFDECHNTSKQHPYNMIM 387
+ L++ DE H + Y ++
Sbjct 195 HVKCLVV-DEAHKALGNYAYCQVV 217
Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/149 (26%), Positives = 70/149 (47%), Gaps = 20/149 (13%)
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
G G T Q ++ F+ G +N L++T V +EG+DI + +L+I ++ +
Sbjct 493 FVGHASGKNTKGFTQKEQLQVVRQFR-DGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKS 551
Query 721 VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
I++IQ GR GR R + ++ + +E+ N S Q+ + +++
Sbjct 552 PIRLIQRMGRTGRKRQGRIVVILAEG----------REERTYNQS----QSNKKNIYKA- 596
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
I + + +R Q P+ VPDK N +L
Sbjct 597 ---ISGNRQVLRLYQGSPRMVPDKINPEL 622
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV--GV 414
G + SLS L++FDECH HPY IM KL + P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGK 213
Query 415 GDAKNTDEALDYICKLCAS 433
D + +E + + K+ S
Sbjct 214 CDPEELEEKIQKLEKILKS 232
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCI 681
I+FV+ R L I+ +P+L+++ +TG G NQ + A Q+ +
Sbjct 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 505 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ +E + YK EK++ +
Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913
GN=DICER1 PE=2 SV=3
Length=1923
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 14/199 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV--GV 414
G + SLS L++FDECH HPY IM KL + P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGK 213
Query 415 GDAKNTDEALDYICKLCAS 433
D + +E + + K+ S
Sbjct 214 CDPEELEEKIQKLEKILKS 232
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-KTNQNTGMTLPA----QKCI 681
I+FV+ R L I+ +P+L+++ +TG G NQ + A Q+ +
Sbjct 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 505 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVML 563
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ +E + YK EK++ +
Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
Length=1584
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (31%), Positives = 92/179 (51%), Gaps = 19/179 (11%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL----ICEHHLKKFPQGQKGKVVFF-A 297
PR YQ+EL K +NTI TG GKT ++ + + L+ +G ++ FF
Sbjct 122 PREYQVEL-FERAKQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLV 180
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE----QIVENNDIIILTPQILVN 353
+++ + QQ S +K + + + + G E V + + +E N++++ T +IL
Sbjct 181 DKVALVFQQHSFLTKNLD---FPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILST 237
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN-YLDQKLGGSSGPLPQVIGLTAS 411
L I + L+IFDE H+T K HPY I+ N Y+D++L P+++GLTAS
Sbjct 238 ALHHSWI-RMDQINLLIFDEAHHTKKDHPYARIIKNFYIDEQLERR----PRILGLTAS 291
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 15/177 (8%)
Query 574 VRAAGFDEIEQDLTQRFEE-----KLQELESVSRDPSNENPKLEDLCFILQEEYHLN-PE 627
++ A DEI + ++ E + DP+ + K+ L IL++++
Sbjct 407 MKVAALDEITEKHVKQVREAHELVNAHTFSPAALDPTMLSSKVIMLVRILRDQFERGVGA 466
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGI----LTGRGKTNQ---NTGMTLPAQKC 680
I+FV+ R L + ++ P++ P I L G G T N + Q
Sbjct 467 QRCIIFVRQRNTAMLLADLLQ-QPEIKSHIPSIAAEVLVGGGTTGSSYVNAKINFQQQNR 525
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
I+ FK G+ N L ATSVA+EG+DI CN+VI ++ +I+ IQ+RGR R S+
Sbjct 526 IIRKFKL-GEINCLFATSVAEEGLDIPDCNIVIRFDLYDTLIQCIQSRGRARRPDSR 581
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1
Length=1410
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (51%), Gaps = 5/172 (3%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQIPV 302
R YQLE A++G NT+ TG GKT +++++ + + + + VF + +
Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLKKGTIP 361
QQ V ++ + + G G + +E+ +++++TPQIL++NL+
Sbjct 94 VGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF- 152
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLPQVIGLTASV 412
L L+IFDECH+ PY I + +L S S PLP++ G++AS+
Sbjct 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASL 204
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+PG+L+ K + I+++F+ G +I+IAT + +EG+D+ CNLVI ++
Sbjct 435 RPGLLSQSRKNHTE----------IVESFR-KGKVHIIIATQILEEGLDVPSCNLVIRFD 483
Query 717 YVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK----EKMMNDSILRLQT 770
V IQ+RGR R S LL V + Q N K ++M + LRL +
Sbjct 484 PSATVCSFIQSRGRARMENSDYLLLVGRGDV--EAQTNAEKFLASGQIMREESLRLGS 539
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2
Length=1377
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 5/172 (3%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQIPV 302
R YQLE A++G NT+ TG GKT +++++ + + + + VF + +
Sbjct 35 RWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVVL 93
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPV-EQIVENNDIIILTPQILVNNLKKGTIP 361
QQ V ++ + + G G + +E+ +++++TPQIL++NL+ +
Sbjct 94 VGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRH-SFF 152
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLPQVIGLTASV 412
L L+IFDECH+ PY I + +L S S PLP++ G++AS+
Sbjct 153 RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASL 204
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (33%), Positives = 47/91 (52%), Gaps = 11/91 (12%)
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+PG+L+ K + I+++F+ G +I+IAT + +EG+D+ CNLVI ++
Sbjct 435 RPGLLSQSRKNHTE----------IVESFR-KGKVHIIIATQILEEGLDVPSCNLVIRFD 483
Query 717 YVGNVIKMIQTRGRGRARGSKCFLLTSNAGV 747
V IQ+RGR R S LL V
Sbjct 484 PSATVCSFIQSRGRARMENSDYLLLVGRGDV 514
>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2
Length=1607
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/111 (38%), Positives = 65/111 (59%), Gaps = 7/111 (6%)
Query 631 ILFVKTRALVDALKNWIEGNPKLSF--LKPGILTGRGK---TNQNTGMTLPAQKCILDAF 685
I+FV+ R + L + ++ P++ L+PGIL G G+ + N +T Q + F
Sbjct 483 IVFVRQRNVASLLTDLLQ-QPEMRIPGLEPGILVGGGRPEASYDNAKVTYRDQVLTIIKF 541
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
K G+ N + ATSVA+EG+DI CN++I Y+ +I+ IQ+RGR R GS
Sbjct 542 K-KGELNCIFATSVAEEGLDIPDCNVIIRYDLNNTLIQYIQSRGRARQEGS 591
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 21/160 (13%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC--------EHHLKKFPQGQKGKVV 294
PR+YQLEL K +NTI TG GKT ++ L+ E K+ P+ ++
Sbjct 135 PRDYQLEL-FERAKTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLPK----RIA 189
Query 295 FF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE---QIVENNDIIILTPQI 350
FF +++ + QQ +V + + Y + G E+V + + + N I+ T +I
Sbjct 190 FFLVDKVALVFQQHAVLACNLD---YPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAEI 246
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 390
L L I + L++FDE H+T K HPY I+ ++
Sbjct 247 LYQCLTHSYI-RMDQVNLLVFDEAHHTKKNHPYARIIKDF 285
>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/138 (32%), Positives = 72/138 (52%), Gaps = 8/138 (6%)
Query 608 NPKLEDLCFILQEEYHLNPE---TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+PKLE LC L + E T I+F + R + + + P +K + G+
Sbjct 496 HPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRILNKQP---LIKATVFVGQ 552
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ ++ GM Q ++ FK +G HN+L+ATS+ +EG+DI Q +L++ Y+ + I+M
Sbjct 553 ADSKRSEGMKQKQQIETIEKFK-NGAHNVLVATSIGEEGLDIGQVDLIVCYDASASPIRM 611
Query 725 IQTRGR-GRARGSKCFLL 741
+Q GR GR R LL
Sbjct 612 LQRMGRTGRKRAGNIVLL 629
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (29%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + + NT++ PTG GKTF++ I ++++ + K VF A P+
Sbjct 156 RDYQFSIVKNGLF-NNTLVALPTGLGKTFIAATIMLNYIR---WTKTAKAVFVAPTKPLA 211
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPV--EQIVENNDIIILTPQILVNNLKKGTIP 361
QQ G + + T E PV E + +TPQ L+N+L KG
Sbjct 212 SQQ---VQACLSIAGIPRSQATLLTGETPPVLREDEWATKRLFFMTPQTLMNDLSKGYAD 268
Query 362 SLSIFTLMIFDECHNTSKQHPY 383
SI L++ DE H + + Y
Sbjct 269 PKSIV-LLVIDEAHRATGDYAY 289
>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl2-1 PE=3 SV=2
Length=1387
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/227 (26%), Positives = 107/227 (47%), Gaps = 21/227 (9%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN-Q 299
++PR+YQ+E+ ++K +N I+ TG GKT ++LL L+ P K+++F
Sbjct 17 YRPRSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPH----KLIWFLTPT 71
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-----IVENNDIIILTPQILVNN 354
+ + QQ S R ++ + EQ I++ +++ T +L +
Sbjct 72 VALCLQQFKFLSDNIP--AVRARTLTSLDKVELWTEQPVWDAILKEMQVVVSTHAVLADA 129
Query 355 LKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG-PLPQVIGLTASVG 413
+ G + ++ LMIFDE H+ ++HP N IM ++ L +P+++GLTAS
Sbjct 130 MSHGFV-KITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKILGLTASPV 188
Query 414 VGDAKN----TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 456
V + + LD +CK S + T H L+Q+++ P
Sbjct 189 VRSNRQELLKIESNLDAVCK-TPRTHRSELMTHTHR-PHLQQILFTP 233
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/116 (32%), Positives = 61/116 (53%), Gaps = 6/116 (5%)
Query 626 PETITILFVKTRALVDALKNWIEGNP--KLSFLKPGILTGRGKTNQNT-GMTLPA--QKC 680
P ++F K RA V ++ + +P K F + G +++ G L A Q+
Sbjct 384 PNFSGLIFAKQRATVSVMEKLLSIHPVTKHRFRCASFVGWSGGGSKDVLGELLDARMQRD 443
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
L F+ +G N++IAT V +EGIDI+ C++V+ ++ N+ +Q RGR R R S
Sbjct 444 TLSEFR-TGQKNLIIATDVLEEGIDISACSVVVCFDKPPNLKSFVQRRGRARHRQS 498
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/183 (31%), Positives = 85/183 (46%), Gaps = 20/183 (11%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL L A NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVEL-LEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFS-----KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
N QQ S K E VT T E Q + ++++T + +
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSSLEVT--ESWTKEKW--SQEFSKHQVLVMTCHVAL 156
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
L+ + SLS L++FDECH + HPY IM K+ P+++GLTAS+
Sbjct 157 TVLRNEYL-SLSNINLLVFDECHLAIQDHPYREIM------KICEDYPSCPRILGLTASI 209
Query 413 GVG 415
G
Sbjct 210 LNG 212
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (29%), Positives = 75/145 (52%), Gaps = 13/145 (9%)
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-----KTNQNTGMTLPAQKCI 681
I+FV+ R L I+ +P+L+++ +TG G N+ + Q+ +
Sbjct 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEV 504
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 505 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIML 563
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ +E + YK EK++ +
Sbjct 564 ADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 71/140 (51%), Gaps = 8/140 (6%)
Query 606 NENPKLEDLCFILQEEY---HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
N +PKL LC L + N T I+F + R + + + P ++ +
Sbjct 526 NGHPKLTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLNNQP---LIRATVFV 582
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G+ + ++ GM Q ++ FK +G N+L+ATS+ +EG+DI Q +L++ Y+ + I
Sbjct 583 GQADSKRSEGMKQKQQIETIEKFK-NGGFNVLVATSIGEEGLDIGQVDLIVCYDASASPI 641
Query 723 KMIQTRGR-GRARGSKCFLL 741
+M+Q GR GR R LL
Sbjct 642 RMLQRMGRTGRKRAGNIVLL 661
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (45%), Gaps = 26/150 (17%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + + NT++ PTG GKTF++ I L F ++ K+VF A P+
Sbjct 188 RDYQFSIVKNGLF-HNTLVALPTGLGKTFIAATIM---LNYFRWTKRSKIVFVAPTKPLA 243
Query 304 EQQKSVFSKYFERHGYRVTGISGA--------TAENVPV--EQIVENNDIIILTPQILVN 353
QQ GI+G T E PV + E+ + +TPQ L+N
Sbjct 244 SQQVQA-----------CLGIAGIPRSQATLLTGETPPVLRQGEWESKRLFFMTPQTLMN 292
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPY 383
+L KG SI L++ DE H + + Y
Sbjct 293 DLSKGYADPKSI-VLLVVDEAHRATGDYAY 321
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis
(strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Length=1500
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 3/152 (2%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P +PK+ L L + + + +T I+F + R L + L+PG+L G
Sbjct 420 PELLSPKVRRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLF-SRIGTKHLRPGVLIG 478
Query 664 RGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
+++ + GM + ++ +L G+ N L ATSVA+EG+DI CNL++ ++ +
Sbjct 479 -VRSDASGGMNISFRQQVLAVVSFRKGEVNCLFATSVAEEGLDIPDCNLIVRFDLASTLT 537
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 754
+ IQ+RGR R S L + +E +N
Sbjct 538 QYIQSRGRARHMNSTFAHLVERDNFVHRESVN 569
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 103/227 (45%), Gaps = 27/227 (12%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKVVFF-A 297
PR YQ+EL A K N I TG GKT +++L+ +H L + +V FF
Sbjct 99 PREYQVELFEKA-KKDNIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPHRVSFFLV 157
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVN 353
+ + + QQ +V + RV GA ++ E+ + N +I+ T ++L
Sbjct 158 DSVTLVFQQAAVLQNNINQ---RVDKFCGAMETDLWNGETWERHLAKNMVIVCTAEVLYQ 214
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
L + +I L+IFDE HN K HPY I+ ++ L + P++ G+TAS
Sbjct 215 CLLHAFVKMENI-NLLIFDEAHNAKKDHPYARIVKDFY---LKDGNAKRPKIFGMTAS-- 268
Query 414 VGDAKNTDEALDYI--CKLCASLDASVIATVKHNLEELEQVVYKPQK 458
D +D + + +L S IAT NL L Q V +P +
Sbjct 269 -----PVDAKMDVVKAARNLETLLNSQIATAS-NLSLLRQSVPRPNE 309
>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (62%), Gaps = 2/84 (2%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
TG + Q +GMT QK ++ FK GD+N+L+ TS+ +EG+DI + +++I Y+ +
Sbjct 545 TGSSEEAQISGMTQKQQKEVISLFK-KGDYNVLVCTSIGEEGLDIGEVDMIICYDTTSSP 603
Query 722 IKMIQTRGR-GRARGSKCFLLTSN 744
IK IQ GR GR R + LL S+
Sbjct 604 IKNIQRMGRTGRKRDGRIVLLLSD 627
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (43%), Gaps = 26/160 (16%)
Query 234 DTNLY-SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
+T LY + ++ R YQ + A+ +N + PTG GKTF++ + L + K
Sbjct 82 NTYLYPTNYEVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTVM---LNYYRWTVGTK 137
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDI 343
++F A P+ QQ GI+G + + EQI +
Sbjct 138 IIFTAPTRPLVAQQIKA-----------CLGITGIPYNDTAILLDKSRKHREQIWSEKRV 186
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 383
TPQ++ N+LK+G + + L++ DE H + Y
Sbjct 187 FFATPQVVENDLKRGALNPKDV-VLLVIDEAHRARGSYAY 225
>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=MPH1 PE=3 SV=1
Length=1012
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (41%), Positives = 52/83 (63%), Gaps = 2/83 (2%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
TG + Q +GM QK ++ FK +GD+N+L+ TS+ +EG+DI + +++I ++ G+
Sbjct 540 TGSSEEAQISGMNQKQQKEVISKFK-NGDYNVLVCTSIGEEGLDIGEVDMIICFDTTGSP 598
Query 722 IKMIQTRGR-GRARGSKCFLLTS 743
IK IQ GR GR R K LL S
Sbjct 599 IKNIQRMGRTGRKRDGKILLLFS 621
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/255 (24%), Positives = 114/255 (45%), Gaps = 42/255 (16%)
Query 234 DTNLY-SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
D+ +Y + F+ R YQ + ++ +NT+ PTG GKTF++ + L F + GK
Sbjct 77 DSYIYPTNFEVREYQFNIVQKSLY-QNTLCAIPTGMGKTFIASTVM---LNFFRWSKNGK 132
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDI 343
++F A P+ QQ GI+G + + E I +
Sbjct 133 IIFTAPTRPLVAQQIKA-----------CLGITGIPHDQAAILLDKSRKNREDIWTQKRV 181
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 403
TPQ++ N+LK+G + I L +FDE H + + Y ++ ++D + S
Sbjct 182 FFTTPQVIENDLKRGVLNPKDIICL-VFDEAHRATGSYAYTNVV-KFID-RFNSSY---- 234
Query 404 QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV 463
+++ LTA+ G A + ++ +L+ S I E ++ + Y +++ K+
Sbjct 235 RILALTATPGTDIAS--------VQEVVNNLNISNIEIRTE--ESMDIIRYMKKRYKEKI 284
Query 464 ESRISDKFKYIIAQL 478
E ++ + + II QL
Sbjct 285 EIGLTTEIEMIIEQL 299
>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (34%), Positives = 52/92 (57%), Gaps = 2/92 (2%)
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
F++P + G+ + GM Q ++ FK +G +N ++ATS+ +EG+DI + +L+I
Sbjct 722 FVRPHVFVGQANAKGSEGMDQKTQLEVVGKFK-TGTYNTIVATSIGEEGLDIGEVDLIIC 780
Query 715 YEYVGNVIKMIQTRGR-GRARGSKCFLLTSNA 745
Y+ + I+M+Q GR GR R LL S
Sbjct 781 YDGHSSPIRMLQRMGRTGRKRAGNIILLLSKG 812
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R YQ +A A+ N ++ PTG GKTF++ + L F + ++VF A P+
Sbjct 325 REYQFNIAHRALF-HNLLVALPTGLGKTFIAATVM---LNWFHWTKDAQIVFVAPTKPLV 380
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ + T ++G T V E+ + + +TPQ ++N+LK G I
Sbjct 381 SQQVDACFHIAGIPRSQTTLLTGNTPPGVRAEEW-RSKRVFFMTPQTIMNDLKTG-IADP 438
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
L++ DE H + + Y I+ +L Q+ S +V+ LTA+ G
Sbjct 439 KRIVLLVVDEAHRATGAYAYVEIV-KFL-QRFNNSF----RVLALTATPGA 483
>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (61%), Gaps = 2/84 (2%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
TG + Q +GM QK ++ FK G++N+L+ TS+ +EG+DI + +L+I Y+ +
Sbjct 540 TGSSEEAQISGMNQKMQKEVIHNFK-KGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSP 598
Query 722 IKMIQTRGR-GRARGSKCFLLTSN 744
IK IQ GR GR R K LL S+
Sbjct 599 IKNIQRMGRTGRKRDGKIVLLFSS 622
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/205 (25%), Positives = 91/205 (44%), Gaps = 34/205 (17%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
++ R+YQ + ++ +NT+ PTG GKTF++ + L F +K K++F A
Sbjct 85 YEVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVM---LNYFRWTKKAKIIFTAPTR 140
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDIIILTPQIL 351
P+ QQ GI+G ++ + E+I N + TPQ++
Sbjct 141 PLVAQQIKA-----------CLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQVV 189
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVI 406
N+LK+G + I L+I DE H + + Y ++ FN + L ++ P +
Sbjct 190 ENDLKRGVLDPKDIVCLVI-DEAHRATGSYAYTNVVKFIDRFNSSYRLLALTATPASDLE 248
Query 407 GLTASVGVGDAK----NTDEALDYI 427
G+ V D T+E++D +
Sbjct 249 GVQEVVNNLDISKIEIRTEESMDIV 273
>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1
PE=1 SV=1
Length=993
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (61%), Gaps = 2/84 (2%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
TG + Q +GM QK ++ FK G++N+L+ TS+ +EG+DI + +L+I Y+ +
Sbjct 540 TGSSEEAQISGMNQKMQKEVIHNFK-KGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSP 598
Query 722 IKMIQTRGR-GRARGSKCFLLTSN 744
IK IQ GR GR R K LL S+
Sbjct 599 IKNIQRMGRTGRKRDGKIVLLFSS 622
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/205 (25%), Positives = 90/205 (44%), Gaps = 34/205 (17%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
++ R+YQ + ++ +NT+ PTG GKTF++ + L F +K K++F A
Sbjct 85 YEVRDYQYTIVHKSL-FQNTLCAIPTGMGKTFIASTVM---LNYFRWTKKAKIIFTAPTR 140
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDIIILTPQIL 351
P+ QQ GI+G ++ + E+I N + TPQ++
Sbjct 141 PLVAQQIKA-----------CLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQVV 189
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVI 406
N+LK+G + I L+I DE H + Y ++ FN + L ++ P +
Sbjct 190 ENDLKRGVLDPKDIVCLVI-DEAHRATGSSAYTNVVKFIDRFNSSYRLLALTATPASDLE 248
Query 407 GLTASVGVGDAK----NTDEALDYI 427
G+ V D T+E++D +
Sbjct 249 GVQEVVNNLDISKIEIRTEESMDIV 273
>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1
PE=3 SV=2
Length=1187
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 2/77 (3%)
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q TGM+ QK I+ FK G NIL+ATS+ +EG+DI + +L+I Y+ + IK IQ
Sbjct 572 QMTGMSQKLQKEIIKKFKK-GVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRM 630
Query 729 GR-GRARGSKCFLLTSN 744
GR GR R K +L S+
Sbjct 631 GRTGRKRDGKVLMLFSS 647
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (46%), Gaps = 7/147 (5%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+ R+YQ + A N ++ PTG GKTF++ + + L+ FP K++F A
Sbjct 135 FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFP---ISKIIFMAPTR 190
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
P+ QQ +V + T N +I + + TPQ++ N+L G +
Sbjct 191 PLVAQQIKACCSIAGIPSSKVAILLDKTRRN--RAEIWNSRQVFFTTPQVVENDLASGVV 248
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIM 387
SI L++ DE H + YN ++
Sbjct 249 NPKSI-ALLVIDEAHRAKGNYSYNNVV 274
>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 2/77 (3%)
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q GM QK I+ FK G +NIL+ATS+ +EG+DI + +L+I Y+ + IK IQ
Sbjct 522 QINGMNQKLQKEIIKNFK-QGTYNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRM 580
Query 729 GR-GRARGSKCFLLTSN 744
GR GR R K LL S+
Sbjct 581 GRTGRKRDGKVVLLFSS 597
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (26%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
S F+ R+YQ + A N ++ PTG GKTF++ + + L+ FP+ K++F A
Sbjct 84 SNFEVRDYQFNIVQRAFY-HNLLVALPTGLGKTFIASTVMLNFLRWFPE---SKMIFVAP 139
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
P+ QQ +V + T +N +I + + TPQ++ N+L G
Sbjct 140 TKPLVAQQIKACCSITGIPSSKVAILLDKTRKNRG--EIWDEKQVFFTTPQVVENDLASG 197
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
+ +I L++ DE H + YN I+ ++D+ +++ LTA+ D
Sbjct 198 LVDPKTI-ALLVIDEAHRAKGNYAYNNIV-KFMDRFTNSY-----RILALTATPA-SDVD 249
Query 419 NTDEALD 425
E +D
Sbjct 250 GVQEIID 256
>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (61%), Gaps = 2/84 (2%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
TG + Q +GM QK ++ FK SG +N+L+ TS+ +EG+DI + +L+I Y+ +
Sbjct 535 TGSSEEAQLSGMNQKQQKEVIKKFK-SGLYNVLVCTSIGEEGLDIGEVDLIICYDTTSSP 593
Query 722 IKMIQTRGR-GRARGSKCFLLTSN 744
IK IQ GR GR R + L+ S+
Sbjct 594 IKNIQRMGRTGRKRDGRIVLMFSS 617
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/159 (28%), Positives = 72/159 (45%), Gaps = 28/159 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICA-PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
F+ R+YQ ++ + I+CA PTG GKTF++ + L F + K++F A
Sbjct 80 FEVRDYQFDIVRKGLL--QNILCAIPTGMGKTFIASTVM---LNFFRWTKTAKIIFTAPT 134
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDIIILTPQI 350
P+ QQ GI+G + + E+I N + TPQ+
Sbjct 135 RPLVAQQIKA-----------CLGITGIPHDQTAILLDKTRKNREEIWANKRVFFTTPQV 183
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY-NMIMF 388
+ N+LK+G + I L+I DE H + + Y N++ F
Sbjct 184 VENDLKRGVLNPKDIVCLVI-DEAHRATGSYAYANLVKF 221
>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query 608 NPKLEDLCFILQEEY----------HLNPE-TITILFVKTRALVDALKNWIEGNPKLSFL 656
+PKL LC + + ++ P T I+F + R + + + N +
Sbjct 612 HPKLTHLCDTVLNHFLDAGAGLTGDNMPPSSTRVIVFTEYRDSAEDIARVL--NKHGPMI 669
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
K + G+ + ++ GM Q + FKA G N+++ATS+ +EG+DI + +L++ Y+
Sbjct 670 KASVFVGQSDSKRSEGMNQEKQLETIRKFKAGG-INVIVATSIGEEGLDIGEVDLIVCYD 728
Query 717 YVGNVIKMIQTRGR-GRARGSKCFLL 741
+ I+M+Q GR GR R K LL
Sbjct 729 SSSSPIRMLQRMGRTGRKRAGKIVLL 754
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (47%), Gaps = 9/131 (7%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N ++ PTG GKTF++ I L F + ++VF A P+ QQ FE G
Sbjct 286 NLLVALPTGLGKTFIAATIM---LNFFRWTKNSQIVFMAPTKPLVSQQ---VKACFEIAG 339
Query 319 YRVTGISGATAENVPVEQIVENND--IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
+ + T + P + E ++ + +TPQ + N+LK G I L++ DE H
Sbjct 340 IPRSSTTMLTGDQTPALRAEEWDEKRVFFMTPQTVENDLKTG-IADPKRIALLVVDEAHR 398
Query 377 TSKQHPYNMIM 387
+ ++ Y ++
Sbjct 399 ATGKYAYTKVV 409
>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (44%), Positives = 45/71 (63%), Gaps = 2/71 (3%)
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
GM QK ++ FK G++NIL+ATS+ +EG+DI + +L++ Y+ + IK IQ GR
Sbjct 535 GMNQKLQKDLIKKFKK-GEYNILVATSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRT 593
Query 731 GRARGSKCFLL 741
GR R K LL
Sbjct 594 GRKRDGKVLLL 604
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+ R+YQ + A N ++ PTG GKTF++ + + + FP +GK++F A
Sbjct 85 FEVRDYQFNIVQRAFYD-NLLVALPTGLGKTFIASTVMLNFTRWFP---RGKIIFMAPTK 140
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDIIILTPQIL 351
P+ QQ GI+G V + I ++ + TPQ++
Sbjct 141 PLVAQQIKA-----------CCGITGIPTSEVAILLDKSRRNRADIWDSKTVFFTTPQVV 189
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM-----FNYLDQKLGGSSGPLPQVI 406
N+L G I + L++ DE H + + YN ++ FN + L ++ P V
Sbjct 190 ENDLTAGIIDPKEV-VLLVIDEAHKSKGNYAYNNVVKFITRFNISFRILALTATPASDVE 248
Query 407 GL 408
G+
Sbjct 249 GV 250
>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=mph1 PE=3 SV=1
Length=1235
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/115 (30%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T I+F + R + + + N ++ + G+ + ++ GM Q + FKA
Sbjct 637 TRVIVFTEYRDSAEDIARVL--NKHGPMIRASVFVGQSDSKRSEGMNQEKQLETIRKFKA 694
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
G N+++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R K LL
Sbjct 695 GG-INVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLL 748
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (44%), Gaps = 9/131 (7%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N ++ PTG GKTF++ I L F ++VF A P+ QQ FE G
Sbjct 280 NLLVALPTGLGKTFIAATIM---LNFFRWTTDSQIVFMAPTKPLVSQQ---VKACFEIAG 333
Query 319 YRVTGISGATAENVPVEQIVE--NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
+ + T + P + E + +TPQ + N+LK G I L++ DE H
Sbjct 334 IPRSSTTMLTGDQSPALRAEEWAEKRVFFMTPQTVENDLKTG-IADPKKIALIVVDEAHR 392
Query 377 TSKQHPYNMIM 387
+ + Y ++
Sbjct 393 ATGNYAYTKVV 403
>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/88 (38%), Positives = 51/88 (58%), Gaps = 2/88 (2%)
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ G TG + Q +GM QK ++ FK G +N+L+ TS+ +EG+DI + +L+I ++
Sbjct 549 RTGRRTGSSEEAQLSGMNQKQQKKVISDFK-KGIYNVLVCTSIGEEGLDIGEVDLIICFD 607
Query 717 YVGNVIKMIQTRGR-GRARGSKCFLLTS 743
+ IK IQ GR GR R + LL S
Sbjct 608 STSSPIKNIQRMGRTGRKRDGRIVLLFS 635
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/152 (24%), Positives = 66/152 (43%), Gaps = 25/152 (16%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
++ R YQ ++ A+ +N + PTG GKTF++ + L + + K++F A
Sbjct 99 YEVRQYQYDIVRCAL-FENVLCAIPTGTGKTFIASTVM---LNYYRWTKSSKIIFTAPTR 154
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPV---------EQIVENNDIIILTPQIL 351
P+ QQ GI+G + + E+I + + TPQ++
Sbjct 155 PLVAQQIKA-----------CLGITGIPYSDTAILLDKSRKNREEIWQQKRVFFTTPQVV 203
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 383
N+LK+G + + L++ DE H + Y
Sbjct 204 ENDLKRGVLNPKDV-VLLVIDEAHRARGNYAY 234
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis
thaliana OX=3702 GN=DCL3 PE=1 SV=2
Length=1580
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 109/224 (49%), Gaps = 29/224 (13%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+E E +E+ ++ ++ + E QNL S P ++D+N +Y+L++ A
Sbjct 5 LEPEKMEEGGGSNSLKRKFSEIDGDQNLDSVSSP--MMTDSN-------GSYELKVYEVA 55
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--VVFFANQIPVYEQQ----KS 308
K +N I TG K+ ++ + +K K ++F A + + +QQ ++
Sbjct 56 -KNRNIIAVLGTGIDKSEIT----KRLIKAMGSSDTDKRLIIFLAPTVNLVKQQCCEIRA 110
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
+ + E + + G+ T++ E +D++++TPQIL++ L+ + L + L
Sbjct 111 LVNLKVEEY-FGAKGVDKWTSQRWDEE--FSKHDVLVMTPQILLDVLRSAFL-KLEMVCL 166
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+I DECH+T+ HPY +M + + S P++ GLTAS
Sbjct 167 LIIDECHHTTGNHPYAKLMKEFYHE-----STSKPKIFGLTASA 205
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/161 (20%), Positives = 72/161 (45%), Gaps = 12/161 (7%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+PKL++L F L + + + + ++ V+ ++ +++ L++L LT
Sbjct 392 SPKLKEL-FHLLDSFRGDKQKQCLILVERIITAKVIERFVKKEASLAYLNVLYLT----- 445
Query 668 NQNTGMTLPAQKC---ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
N + AQK I D F+ G N+L T V +EG + C+ ++ ++ +
Sbjct 446 ENNPSTNVSAQKMQIEIPDLFQ-HGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 504
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQIN--MYKEKMMND 763
Q++ + SK + +++ ++ M +E ++ D
Sbjct 505 SQSQKHAKQSNSKSIMFLERGNPKQRDHLHDLMRREVLIQD 545
>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/139 (29%), Positives = 64/139 (46%), Gaps = 20/139 (14%)
Query 625 NPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
N E ++FV T+ + D + ++ +G P LS G QN + +L
Sbjct 381 NKENKILIFVGTKRVADEITRFLRQDGWPALSI--------HGDKQQN------ERDWVL 426
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCF 739
D FK +G I++AT VA GID+ V+ Y+Y N I I GR A G+
Sbjct 427 DQFK-TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAIT 485
Query 740 LLTSNAGVIEKEQINMYKE 758
L T++ ++ +N+ +E
Sbjct 486 LFTTDNQKQARDLVNVLQE 504
>sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula
boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442
GN=hel308 PE=3 SV=1
Length=723
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (25%), Positives = 79/163 (48%), Gaps = 24/163 (15%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GKN ++ PT GKT ++ + H+ GK ++ +P+ K++ S+ +
Sbjct 37 LDGKNLLVAIPTASGKTLIAEMAMHRHI-----ANGGKCLYI---VPL----KALASEKY 84
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFD 372
E G + + +T + + + NDII+ T + + + L+ G IP + TL++ D
Sbjct 85 EEFGNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDI---TLVVID 141
Query 373 ECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
E H ++ + P ++ + K P Q+IGL+A++G
Sbjct 142 EIHLIDSPDRGPTLEMVIAKMRSK-----NPGMQLIGLSATIG 179
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex
subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1
Length=2201
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (47%), Gaps = 24/132 (18%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ F QG + K+V+ A + + + FSK
Sbjct 493 ENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFSK 552
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK---------GTIPSL 363
E G V ++G Q+ +N IL Q+LV +K G +
Sbjct 553 RLEPLGIVVKELTGDM-------QLSKNE---ILRTQMLVTTPEKWDVVTRKSVGDVALS 602
Query 364 SIFTLMIFDECH 375
I L+I DE H
Sbjct 603 QIVKLLILDEVH 614
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster
OX=7227 GN=Dcr-1 PE=1 SV=1
Length=2249
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGR----GKTNQNTGMTLPAQKCILDAFKASGDH 691
R L + L +P L FL+ T R + + Q+ +L F+ D
Sbjct 505 ARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQEEVLKRFRMH-DC 563
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
N+LI TSV +EGID+ +CNLV+ ++ +Q +GR RA + +L +
Sbjct 564 NVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILVA 615
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/256 (19%), Positives = 115/256 (45%), Gaps = 18/256 (7%)
Query 234 DTNLYSP-FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
D NL++ F PR++Q+EL A + +NTIIC K F++L + + ++ + G+
Sbjct 7 DNNLHTTVFTPRDFQVELLATAYE-RNTIICLGHRSSKEFIALKLLQELSRR--ARRHGR 63
Query 293 V-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
V V+ + ++ + S+++ RV +P + + + IL P+
Sbjct 64 VSVYLSCEVGTSTEPCSIYTMLTHLTDLRV--WQEQPDMQIPFDHCWTDYHVSILRPEGF 121
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L+ + LS L++ ++CH+++ Y I + + + P+++GL
Sbjct 122 LYLLETREL-LLSSVELIVLEDCHDSAV---YQRIRPLFENHIMPAPPADRPRILGLAGP 177
Query 412 VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVY--KPQKFFRKVESRISD 469
+ + L + + A+L+ SV+ ++ + + + Y +P ++ + D
Sbjct 178 LHSAGCE-----LQQLSAMLATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMD 232
Query 470 KFKYIIAQLMRDTESL 485
+ ++A ++ +S
Sbjct 233 ELSLVLADVLNTHKSF 248
>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
S++ L DL +E + +T++FV+T+ D+L+NW+ + G
Sbjct 396 SDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWL------------CINGF 443
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
T+ + T ++ L AFK SG IL+AT VA G+DI V+ ++ ++
Sbjct 444 PATSIHGDRTQQEREVALKAFK-SGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
Query 725 IQTRGRGRARGSKCFLLTS 743
+ GR R K L T+
Sbjct 503 VHRIGR-TGRAGKSGLATA 520
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (46%), Gaps = 11/129 (9%)
Query 255 MKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
++G++ + CA TG GKT +S ++ + H+++ P+G + P E
Sbjct 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQR-PRGSRTVYPLAVILSPTRELASQ 252
Query 309 VFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ K+ + G +V G T N + ++ DI++ TP L + L++ + S+ +
Sbjct 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARV-SMQM 311
Query 366 FTLMIFDEC 374
+ DE
Sbjct 312 IRFLALDEA 320
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex
subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1
Length=2197
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/125 (29%), Positives = 62/125 (50%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ F QG + K+V+ A + + + FSK
Sbjct 494 ENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSK 553
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLMI 370
E G V ++G + +I+ +++ TP+ +V G + I L+I
Sbjct 554 RLEPLGIVVKELTGDM--QLSKSEILRTQ-MLVTTPEKWDVVTRKSVGDVALSQIVKLLI 610
Query 371 FDECH 375
DE H
Sbjct 611 LDEVH 615
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex
subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1
Length=2198
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/125 (29%), Positives = 62/125 (50%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ F QG + K+V+ A + + + FSK
Sbjct 494 ENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSK 553
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLMI 370
E G V ++G + +I+ +++ TP+ +V G + I L+I
Sbjct 554 RLEPLGIVVKELTGDM--QLSKSEILRTQ-MLVTTPEKWDVVTRKSVGDVALSQIVKLLI 610
Query 371 FDECH 375
DE H
Sbjct 611 LDEVH 615
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=brr2
PE=1 SV=1
Length=2176
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V++L + L+K + Q K+V+ A + ++ + FS
Sbjct 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K + RV ++G ++ +Q + II+ TP+ + K + +++ L+I
Sbjct 596 KRLTPYNIRVAELTG---DSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVI 652
Query 371 FDECH 375
DE H
Sbjct 653 IDEVH 657
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1
PE=1 SV=1
Length=636
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 89/200 (45%), Gaps = 34/200 (17%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ K+ +E E ++L
Sbjct 382 ARDFLKDYVFLSVGRVG--STSENITQ----KVVHVEDS-----------EKRSYLLDIL 424
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
+ L PE +T++FV+T+ + D L +++ + +F I R T ++
Sbjct 425 HTLPPEGLTLIFVETKRMADTLTDYLLNS---NFPATSIHGDR---------TQRERERA 472
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+ F+ SG +I++AT+VA G+DI VI Y+ + + + I GR G
Sbjct 473 LELFR-SGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAV 531
Query 739 FLLTSNAGVIEKEQINMYKE 758
N I KE I + +E
Sbjct 532 AFFNRNNKGIAKELIELLQE 551
>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
OX=759272 GN=DBP2 PE=3 SV=2
Length=556
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++FV T+ + D + ++ +G P LS G QN + +LD FK +
Sbjct 382 LIFVGTKRVADDITRFLRQDGWPALSI--------HGDKQQNE------RDWVLDQFK-T 426
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK-CFLLTSN 744
G I++AT VA GID+ VI Y+Y N I I GR A+G+ F T N
Sbjct 427 GKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 486
Query 745 A 745
A
Sbjct 487 A 487
>sp|Q9YFQ8|HELS_AERPE ATP-dependent DNA helicase Hel308 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) OX=272557 GN=hel308 PE=3 SV=2
Length=735
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (45%), Gaps = 25/176 (14%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+P+ L+ + KG+N ++ APTG GKTF++L+ + L + G+ +
Sbjct 29 FEPQYMALQAGVE--KGENLVVAAPTGSGKTFIALVAIVNSLAR----AGGRAFYLVPLK 82
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLK 356
V ++ + FS R G ++ G E P +V E D ++ L N+
Sbjct 83 SVAYEKYTSFS-ILSRMGLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNV- 140
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+++I DE H+ S P + + ++ S+G Q++GL+A+V
Sbjct 141 ----------SVLIVDEIHSVS--DPKRGPILESIVSRMLASAGE-AQLVGLSATV 183
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex
subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3
Length=2202
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (49%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ F QG + K+V+ A + + FS+
Sbjct 493 ENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFSR 552
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLMI 370
E G V ++G + +I+ +++ TP+ +V G + I L+I
Sbjct 553 RLEPLGIIVKELTGDM--QLSKSEILRTQ-MLVTTPEKWDVVTRKSVGDVALSQIVRLLI 609
Query 371 FDECH 375
DE H
Sbjct 610 LDEVH 614
>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQIPVYE--QQKSVF 310
+ G++ + APTG GKT LL HL FP+ + G +++ P E Q S
Sbjct 39 LDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILT---PTRELAMQVSDH 95
Query 311 SKYFERHGY-RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
++ +H + + I+G A E EN DI++ T L+ +K+ ++ TL
Sbjct 96 ARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETL- 154
Query 370 IFDEC 374
I DE
Sbjct 155 ILDEA 159
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (46%), Gaps = 27/148 (18%)
Query 582 IEQDLTQRFEEKL-QELESVSRDPSNENPK--------LEDLCFILQEEYHL--NPE-TI 629
+E D Q F E+L ++ VS +PS K +DL HL PE T
Sbjct 191 LEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR 250
Query 630 TILFVKTRALVDALKNWI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+I+FV+ R V L NW+ E +L+ ++ +GK N+ A K + +
Sbjct 251 SIVFVRKRERVHELANWLREAGINNCYLEGEMV--QGKRNE-------AIKRLTE----- 296
Query 689 GDHNILIATSVADEGIDIAQCNLVILYE 716
G N+L+AT VA GIDI + V ++
Sbjct 297 GRVNVLVATDVAARGIDIPDVSHVFNFD 324
>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment)
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/162 (28%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 83 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 138
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ G + G +QNT + I+ F+ SG +LI T + GID
Sbjct 139 KMRGRDH------TVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 185
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +T +
Sbjct 186 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKD 227
>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (30%), Positives = 56/117 (48%), Gaps = 14/117 (12%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ +T++FV+T+ DAL+NW+ N G T+ + T ++ L +FK
Sbjct 428 QALTLVFVETKRGADALENWLYNN------------GFPATSIHGDRTQQEREYALRSFK 475
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
SG IL+AT VA G+DI VI ++ ++ + GR R K L T+
Sbjct 476 -SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGR-TGRAGKSGLATA 530
>sp|Q3E7X8|YE077_YEAST Y' element ATP-dependent helicase YEL077C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=YEL077C PE=2 SV=1
Length=1277
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G+ +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 512 FVTDGNMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 568
>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP2 PE=3 SV=1
Length=548
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/121 (31%), Positives = 56/121 (46%), Gaps = 21/121 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++FV T+ + D + ++ +G P LS G QN + +LD FK +
Sbjct 378 LIFVGTKRVADEITRFLRQDGWPALSI--------HGDKQQNE------RDWVLDQFK-T 422
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK-CFLLTSN 744
G I++AT VA GID+ V+ Y+Y N I I GR A+G+ F T N
Sbjct 423 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 482
Query 745 A 745
+
Sbjct 483 S 483
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (43%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q ++
Sbjct 159 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 218
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
SK+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 219 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKT-NLRRVTYLV 277
Query 371 FDEC 374
DE
Sbjct 278 LDEA 281
>sp|Q03099|YMN3_YEAST Y' element ATP-dependent helicase YML133C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=YML133C PE=2 SV=1
Length=1374
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 665 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 721
>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (29%), Positives = 60/133 (45%), Gaps = 14/133 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L DL + + +T++FV+T+ DAL+NW+ N G T+ +
Sbjct 417 LMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTN------------GFPATSIH 464
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
T ++ L +FK SG IL+AT VA G+DI VI ++ ++ + GR
Sbjct 465 GDRTQQEREYALRSFK-SGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGR 523
Query 731 GRARGSKCFLLTS 743
R K L T+
Sbjct 524 -TGRAGKSGLATA 535
>sp|P53819|YRF16_YEAST Y' element ATP-dependent helicase protein
1 copy 6 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-6 PE=2 SV=1
Length=1859
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1151 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1207
>sp|O13559|YRF14_YEAST Y' element ATP-dependent helicase protein
1 copy 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-4 PE=2 SV=1
Length=1382
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 673 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 729
>sp|P0CX15|YRF17_YEAST Y' element ATP-dependent helicase protein
1 copy 7 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-7 PE=2 SV=1
Length=1859
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1151 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1207
>sp|P0CX14|YRF13_YEAST Y' element ATP-dependent helicase protein
1 copy 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-3 PE=2 SV=1
Length=1859
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1151 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1207
>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G QN + +LD FK +
Sbjct 385 LIFTGTKRVADDITRFLRQDGWPALSI--------HGDKQQNE------RDWVLDQFK-T 429
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA GID+ V+ Y+Y N I I GR A+G+ T++
Sbjct 430 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 489
Query 746 GVIEKEQINMYKE 758
+E + + +E
Sbjct 490 SKQARELVGVLQE 502
Score = 37.4 bits (85), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (42%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 166 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQQEI 225
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
SK+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 226 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKT-NLRRVTYLV 284
Query 371 FDEC 374
DE
Sbjct 285 LDEA 288
>sp|Q99208|YL066_YEAST Y' element ATP-dependent helicase YLL066C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=YLL066C PE=2 SV=2
Length=1374
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 665 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 721
>sp|Q07888|YL067_YEAST Y' element ATP-dependent helicase YLL067C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=YLL067C PE=2 SV=2
Length=1374
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 665 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 721
>sp|P0CX22|YRF18_YEAST Y' element ATP-dependent helicase protein
1 copy 8 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-8 PE=2 SV=1
Length=1796
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1087 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1143
>sp|P0CX21|YRF15_YEAST Y' element ATP-dependent helicase protein
1 copy 5 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-5 PE=2 SV=1
Length=1796
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1087 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1143
>sp|P0CX20|YRF11_YEAST Y' element ATP-dependent helicase protein
1 copy 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-1 PE=2 SV=1
Length=1796
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 1087 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1143
>sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (44%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +TS+
Sbjct 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSD 386
>sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/131 (30%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ G + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 KMRGRDHT------VSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 345 VQQVSLVINYD 355
>sp|P40105|YRF12_YEAST Y' element ATP-dependent helicase protein
1 copy 2 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YRF1-2 PE=2 SV=2
Length=1681
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 973 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1029
>sp|P40434|YIR7_YEAST Y' element ATP-dependent helicase YIL177C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=YIL177C PE=2 SV=1
Length=1758
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 958 FVTDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1014
>sp|P43538|YFG6_YEAST Y' element ATP-dependent helicase YFL066C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=YFL066C PE=2 SV=1
Length=392
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 288 FVTDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR-DGGLCYLLS 344
>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3
SV=1
Length=623
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTN 668
L DL ++ T+T++FV+T+ D+L++W+ G P S G N
Sbjct 400 LMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSI--------HGDRN 451
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q ++ L +FK SG IL+AT VA G+DI V+ ++ ++ +
Sbjct 452 QQE------REYALRSFK-SGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 504
Query 729 GRGRARGSKCFLLTS 743
GR R K L T+
Sbjct 505 GR-TGRAGKSGLATA 518
>sp|P40889|YJW5_YEAST Y' element ATP-dependent helicase YJL225C
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=YJL225C PE=2 SV=2
Length=1758
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 958 FVTDGSMQVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 1014
>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (46%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G QN + +L+ FK +
Sbjct 379 LIFTGTKRVADDITRFLRQDGWPALSI--------HGDKQQN------ERDWVLNEFK-T 423
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA GID+ V+ Y+Y N + I GR A+G+ L T++
Sbjct 424 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDN 483
Query 746 GVIEKEQINMYKE 758
++ +N+ E
Sbjct 484 AKQARDLVNILTE 496
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 5/187 (3%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPE-CQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL 250
+ + +D+E + ++ ++ + P + E P +S+ KP Q +
Sbjct 99 VTNRSAQDVEAFRKEHEMTVYGKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQG 158
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQK 307
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 159 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQ 218
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+ +K+ + R T + G + + ++ I TP L++ L+ G +L T
Sbjct 219 AEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGKT-NLRRVT 277
Query 368 LMIFDEC 374
++ DE
Sbjct 278 YLVLDEA 284
>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 18/135 (13%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW--IEGNPKLSFLKPGILT 662
S++ L DL +E + + +T++FV+T+ D+L+NW I G P +
Sbjct 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTI------- 435
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G +Q ++ L +FK +G IL+AT VA G+DI V+ ++ ++
Sbjct 436 -HGDRSQQE------REVALRSFK-TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDID 487
Query 723 KMIQTRGR-GRARGS 736
+ GR GRA S
Sbjct 488 DYVHRIGRTGRAGNS 502
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 12/134 (9%)
Query 251 ALPAMK-GKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
A+P + G++ + CA TG GKT +S ++ + H+++ P+G +G P
Sbjct 176 AIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIER-PRGVRGVYPLAVILSPTR 234
Query 304 E---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
E Q K+ + G +V G T N + ++ DI++ TP L + L++G +
Sbjct 235 ELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRV 294
Query 361 PSLSIFTLMIFDEC 374
SL + + DE
Sbjct 295 -SLQMVRFLALDEA 307
>sp|Q08995|YP204_YEAST Y' element ATP-dependent helicase YPR204W
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
OX=559292 GN=YPR204W PE=2 SV=1
Length=1032
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 1/58 (2%)
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F G +LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 288 FVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLRD-GGLCYLLS 344
>sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /
Vc1) OX=186497 GN=hel308 PE=1 SV=1
Length=720
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/162 (25%), Positives = 76/162 (47%), Gaps = 21/162 (13%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GKN +I PT GKT ++ + H + Q GK V+ + E++ F +
Sbjct 37 LEGKNALISIPTASGKTLIAEIAMVHRILT----QGGKAVYIVPLKALAEEKFQEFQDW- 91
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E+ G RV + AT + ++ + DIII T + + L+ G+ + +++ DE
Sbjct 92 EKIGLRV---AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEI 147
Query 375 H---NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
H + + +I+ + L + Q+IGL+A++G
Sbjct 148 HLIGSRDRGATLEVILAHMLGK---------AQIIGLSATIG 180
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (27%), Positives = 56/130 (43%), Gaps = 6/130 (5%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQ 306
ALP M G++ I A TG GKT +L H+K P + G P E Q
Sbjct 559 ALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPSLS 364
S K+ + G R + G + + ++ +I++ TP +++ L G I +L
Sbjct 619 HSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLR 678
Query 365 IFTLMIFDEC 374
T ++ DE
Sbjct 679 RVTFLVMDEA 688
Score = 34.3 bits (77), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 740
N+LIATSVA G+D+ + LV+ ++ + + GR GRA C +
Sbjct 828 NLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAV 877
>sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus
kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
OX=69014 GN=hel308 PE=3 SV=1
Length=1125
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 93/210 (44%), Gaps = 33/210 (16%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
++GKN ++ PT GKT VS ++ + L + GK V+ + E++ F K
Sbjct 36 VLEGKNLVLAIPTASGKTLVSEIVMVNKL----LSEGGKAVYLVPLKALAEEKYREF-KE 90
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+E G RV +G + ++ + DII+ T + + L+ G + L++ DE
Sbjct 91 WEVLGLRVAATTG---DYDSTDEWLGRYDIIVATAEKFDSLLRHGA-SWIKDVKLVVADE 146
Query 374 CH---NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKL 430
H + + MI+ + L + Q++ L+A+VG N +E L
Sbjct 147 VHLIGSYDRGATLEMILTHMLGK---------AQILALSATVG-----NAEE-------L 185
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFF 460
LDAS++ + +E + V + Q F+
Sbjct 186 AEWLDASLVVSDWRPVELRKGVFHLGQLFW 215
>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=srmB PE=3 SV=1
Length=439
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 9/138 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQ 299
+P Q+E AM+ + + APTG GKT LL HL +P+ + G +++
Sbjct 26 RPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLT-- 83
Query 300 IPVYEQQKSVFSKYFERHGY---RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
P E V + E + + I+G A + N D+++ TP L+ +K
Sbjct 84 -PTRELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIK 142
Query 357 KGTIPSLSIFTLMIFDEC 374
+ S+ ++IFDE
Sbjct 143 EENFDCRSV-EMLIFDEA 159
>sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus
abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3
SV=1
Length=715
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (49%), Gaps = 15/160 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
++G+N ++ PT GKT ++ + + L + + GK V+ + E++ F K
Sbjct 36 VLEGENLLVAIPTASGKTLIAEIAIANKLLE----EGGKAVYIVPLKALAEEKFREF-KD 90
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ER G +V + AT + ++ + DIII T + + L+ G+ + +++ DE
Sbjct 91 WERLGLKV---AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS-SWIRDVKMLVIDE 146
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
H + + F + Q LG + Q+IGL+A++G
Sbjct 147 IHLIGSRDRGATLEF-IITQMLGRA-----QIIGLSATIG 180
>sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2
Length=855
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (49%), Gaps = 16/133 (12%)
Query 605 SNENPKLEDLCFILQ-EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
SNE K + L L + +LN E TI+FV ++ + D L N +E N +F I G
Sbjct 507 SNEEDKFKSLIHWLALTQQNLNDEK-TIVFVSSQQICDILYNRLEANGFTTF---AIHAG 562
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ T + + KC FK + + ILI T V G+++ + +LVI+Y +
Sbjct 563 KIYTERAWNL-----KC----FKETA-NGILICTEVLSRGLNVPEVSLVIIYNAAKTFAQ 612
Query 724 MIQTRGRGRARGS 736
+ T GR ARGS
Sbjct 613 YVHTTGR-TARGS 624
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex
subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2
Length=1534
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (47%), Gaps = 11/126 (9%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKF--PQG----QKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ P G + K+V+ A + + + FS
Sbjct 90 ENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYFS 149
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
K E G V ++G + + +++ TP+ +V G + + L+
Sbjct 150 KRLEPLGIAVKELTGDMQLT---KGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRLL 206
Query 370 IFDECH 375
I DE H
Sbjct 207 ILDEVH 212
Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (49%), Gaps = 7/92 (8%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN-QIPVYEQQKSVFSKYFERH 317
N ++ APTG GKT + + +P KVV+ A + V E+ + + E+
Sbjct 906 NVLLGAPTGSGKTIAAEMAIFRVFNMYP---TSKVVYIAPLKALVRERIEDWKIRIEEKL 962
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
G +V ++G +N P + + D+I+ TP+
Sbjct 963 GRKVVELTG---DNTPDMRAIAQADLIVTTPE 991
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 10/127 (8%)
Query 253 PAMKGKNTIICAPTGCGKTF---VSLL--ICEHHLKKFPQGQKGKVVFFANQIPVYEQQK 307
PAM+GK+ + A TG GKT + +L I H+ K P GK P E K
Sbjct 131 PAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSP----GKFPLAIVLAPTRELAK 186
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V ++ + + G T + + Q+ D++I TP +++ LK+G + +LS
Sbjct 187 QVEREFSDSSNVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKRGAL-NLSEVR 245
Query 368 LMIFDEC 374
++ DE
Sbjct 246 FVVLDEA 252
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 94/225 (42%), Gaps = 46/225 (20%)
Query 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
Y ++I R+ D L S VR DE +Q L+ F+E ++ + + R P
Sbjct 218 YGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETI--LDRVP--- 272
Query 608 NPKLEDLCFI---------LQEEYHLNPETITILFVKTRALVDALKNWI---EGNPKLSF 655
PK + L F L ++Y NP TI ++ + L + + + EG+ K +
Sbjct 273 -PKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAV 331
Query 656 L--------KPG-----ILTGR---------GKTNQ----NTGMTLPAQKCILDAFKASG 689
L K G T R G++ Q + +T ++ L F+ G
Sbjct 332 LGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFR-EG 390
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
NILIAT VA G+DI +LVI +E + + GR GRA
Sbjct 391 HFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGRA 435
>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G QN + +LD FK +
Sbjct 389 LIFTGTKRVADEITRFLRQDGWPALSI--------HGDKQQN------ERDWVLDQFK-T 433
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA GID+ V+ Y+Y N I I GR A+G+ T++
Sbjct 434 GKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTDN 493
Query 746 GVIEKEQINMYKE 758
++ + + +E
Sbjct 494 SKQARDLVGVLQE 506
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex
subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
Length=2211
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQG-----QKGKVVFFANQIPVYEQQKSVFSK 312
+N +ICAPTG GKT +++L H +++ Q + K+V+ A + + + FSK
Sbjct 502 ENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFSK 561
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLMI 370
E G V ++G + +I+ +++ TP+ +V G + + L+I
Sbjct 562 RLEPLGITVKELTGDM--QLSKGEILRTQ-MLVTTPEKWDVVTRKSVGDVALSQLVKLLI 618
Query 371 FDECH 375
DE H
Sbjct 619 LDEVH 623
>sp|A0A023PXF5|YH218_YEAST Putative uncharacterized helicase-like
protein YHR218W-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) OX=559292 GN=YHR218W-A PE=5 SV=1
Length=105
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
+LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 3 VLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR-DGGLCYLLS 51
>sp|Q3E7Y4|YB112_YEAST Putative uncharacterized helicase-like
protein YBL112C OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=YBL112C PE=5 SV=1
Length=105
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
+LI T + EGIDI Q +VI+ + N+I++IQ GR R G C+LL+
Sbjct 3 VLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR-DGGLCYLLS 51
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)
Query 627 ETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
E+ ++F T+ D + +++ +G P L+ G +Q + +L+
Sbjct 357 ESKILIFASTKRTCDEITSYLRQDGWPALAI--------HGDKDQR------ERDWVLNE 402
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLL 741
F+ +G+ I++AT VA GID+ N V+ Y+ GN+ + I GR A G+
Sbjct 403 FR-TGNSPIMVATDVAARGIDVKGINFVVNYDMPGNIEDYVHRIGRTGRAGATGTAISFF 461
Query 742 TSNAGVIEKEQINMYKEKMMN 762
T + + I++ +E N
Sbjct 462 TEDNKSLGASLISIMREAKQN 482
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP + Q + A+ G++ + A TG GKT L H+ P G V+ A
Sbjct 132 KPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAP 191
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + SK+ + R T + G + +++ +I+I TP L++ L+ G
Sbjct 192 TRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAG 251
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 252 KT-NLKRVTYLVLDEA 266
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/124 (26%), Positives = 54/124 (44%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKK---FPQGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT +L H K +G V+ A + Q K V
Sbjct 121 ALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVV 180
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++ R T + G + + + E +++I TP L++ +G P LS T ++
Sbjct 181 DEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAP-LSRVTFLV 239
Query 371 FDEC 374
DE
Sbjct 240 LDEA 243
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (59%), Gaps = 2/56 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
+LD F+ SG ILIAT VA G+D+ LVI +++ G+ + GR ARG+
Sbjct 373 VLDDFR-SGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGR-TARGN 426
>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/228 (26%), Positives = 97/228 (43%), Gaps = 31/228 (14%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
Q PD DE K L + S KY ++ + A M A++ L + A +
Sbjct 575 QKPDTDEAEDPEKMLANFESGKHKYRQTVMFT--ATMPPAVERLARSYLRRPAVVYIGSA 632
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+R E+K+ + +E+ K + L IL++ + + I+FV + D L
Sbjct 633 GKPHERVEQKVFLM--------SESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVL 680
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+E K+ + + G+G+ + + L KA G +IL+AT VA G
Sbjct 681 AKSLE---KMGYNACTLHGGKGQEQR---------EFALSNLKA-GAKDILVATDVAGRG 727
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSNAGV 747
IDI ++V+ Y+ N+ I GR GRA S FL ++ V
Sbjct 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 775
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (48%), Gaps = 8/126 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQ-KGKVVFF---ANQIPVYEQQKS 308
A+KG++ I A TG GKT LL H+ P+ GQ G +V ++ V Q++S
Sbjct 199 ALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEES 258
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ R G R T I G + + + +I+I TP L++ L+ +L T
Sbjct 259 --RKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHT-NLKRVTY 315
Query 369 MIFDEC 374
++ DE
Sbjct 316 LVLDEA 321
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (46%), Gaps = 4/81 (5%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSK 737
+L FK SG I+ AT VA G+D+ V+ Y++ + I I GR A+G
Sbjct 452 VLAEFK-SGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMA 510
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T + +E + + +E
Sbjct 511 FTFFTHDNAKFARELVKILQE 531
>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2
SV=2
Length=666
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFA--NQIPVYEQQKS 308
A+KG++ I A TG GKT LL H+ P QG V+ A ++ V QQ+S
Sbjct 285 ALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQES 344
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ R T I G + + + +I+I TP L++ L+ G +L T
Sbjct 345 --GKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEGGHT-NLRRVTY 401
Query 369 MIFDEC 374
++ DE
Sbjct 402 LVLDEA 407
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/134 (30%), Positives = 68/134 (51%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + DAL +++ L+ P +T + ++ L+ F+ S
Sbjct 452 LTLIFVETKRMADALSDFL-----LNQRFPATAIHGDRTQRE-------RERALEMFR-S 498
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
G IL+AT+VA G+DI VI Y+ ++ + GR GRA + F SN
Sbjct 499 GRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRSN 558
Query 745 AGVIEKEQINMYKE 758
GV+ +E I++ KE
Sbjct 559 RGVV-RELIDLLKE 571
>sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13
OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1
Length=2172
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (43%), Gaps = 12/128 (9%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKS 308
K N ++CAPTG GKT V++L H L F G K+V+ A + +
Sbjct 520 KADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNY-KIVYVAPMKALVAEVVD 578
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFT 367
S+ + G V +SG + Q ++ II+ TP+ + K G +
Sbjct 579 SLSQRLKDFGVTVKELSG---DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVR 635
Query 368 LMIFDECH 375
L+I DE H
Sbjct 636 LLIIDEIH 643
Score = 38.1 bits (87), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 32/182 (18%)
Query 222 LSENSCPPSEVSDT--------------NLYSPFK---PRNYQLELALPAMKGKNTIICA 264
L E PP+E+ D LY FK P Q+ L N ++ A
Sbjct 1316 LPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVL-YNTSDNVVVAA 1374
Query 265 PTGCGKTFVS-LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH-GYRVT 322
PTG GKT + I +HL+ +VV+ A + ++Q + K F + G RV
Sbjct 1375 PTGSGKTICAEFAILRNHLEGPDSAM--RVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVV 1432
Query 323 GISGATAENVPVEQIVENNDIIILTPQ---ILVNNLK-KGTIPSLSIFTLMIFDECHNTS 378
++G T ++ +++E III TP+ L K + I +S+F I DE H
Sbjct 1433 ELTGETLLDL---KLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLF---IVDELHLIG 1486
Query 379 KQ 380
Q
Sbjct 1487 GQ 1488
>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/228 (26%), Positives = 97/228 (43%), Gaps = 31/228 (14%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
Q PD DE K L + S KY ++ + A M A++ L + A +
Sbjct 575 QKPDTDEAEDPEKMLANFESGKHKYRQTVMFT--ATMPPAVERLARSYLRRPAVVYIGSA 632
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+R E+K+ + +E+ K + L IL++ + + I+FV + D L
Sbjct 633 GKPHERVEQKVFLM--------SESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVL 680
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+E K+ + + G+G+ + + L KA G +IL+AT VA G
Sbjct 681 AKSLE---KMGYNACTLHGGKGQEQR---------EFALSNLKA-GAKDILVATDVAGRG 727
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSNAGV 747
IDI ++V+ Y+ N+ I GR GRA S FL ++ V
Sbjct 728 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAV 775
>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (28%), Positives = 71/162 (44%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRTRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +T++
Sbjct 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTD 386
>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KL+ LC + Y T +++FV TR VD L +
Sbjct 243 LVKRDELTLEGIKQFYVNVEKEEWKLDTLC----DLYETLAITQSVIFVNTRRKVDWLTD 298
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ G + G +QNT + I+ F+ SG +LI T + GID
Sbjct 299 KMRGRDHT------VSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 345
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 346 VQQVSLVINYD 356
>sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM
12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1
Length=730
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/246 (25%), Positives = 107/246 (43%), Gaps = 35/246 (14%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+ P+ +E L ++GKN + PT GKT ++ L LK G GK ++ +
Sbjct 25 YPPQAEAVEKGL--LEGKNLLAAIPTASGKTLLAELAM---LKSVLAG--GKALYI---V 74
Query 301 PVYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
P+ F ++ F G RV GIS T + ++ + NDII+ T + ++L +
Sbjct 75 PLRALASEKFRRFQDFSELGIRV-GIS--TGDYDRRDEGLGINDIIVATSE-KTDSLLRN 130
Query 359 TIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ ++++ DE H +++ + P + L + P Q++ L+A+VG
Sbjct 131 ETAWMQEISVVVVDEVHLIDSADRGPTLEVTLAKLRKM-----NPFCQILALSATVG--- 182
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
N DE L A LDA ++ + + +E V + F + E I K
Sbjct 183 --NADE-------LAAWLDAELVLSEWRPTDLMEGVFFDGTFFCKDKEKLIEQPTKDEAI 233
Query 477 QLMRDT 482
L+ DT
Sbjct 234 NLVLDT 239
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 62/139 (45%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFA 297
KP Q + A+PA M G++ I A TG GKT LL H+ + +G+ V
Sbjct 394 KPTPIQTQ-AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMT 452
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 453 PTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA 512
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 513 NSGRVTNLRRVTYVVLDEA 531
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 62/139 (45%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFA 297
KP Q + A+PA M G++ I A TG GKT LL H+ + +G+ V
Sbjct 394 KPTPIQTQ-AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMT 452
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 453 PTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA 512
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 513 NSGRVTNLRRVTYVVLDEA 531
>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 23/163 (14%)
Query 603 DPSNENPKLEDLCFILQEEYHLN--PETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
D +E K E L +L + Y + P I I+FV+T+ VD L +I SF G+
Sbjct 505 DVCDEFSKEEKLKTLLSDIYDTSESPGKI-IIFVETKRRVDNLVRFIR-----SF---GV 555
Query 661 LTG--RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G G +Q+ + +L F+ SG NIL+AT VA G+D+ VI ++Y
Sbjct 556 RCGAIHGDKSQS------ERDFVLREFR-SGKSNILVATDVAARGLDVDGIKYVINFDYP 608
Query 719 GN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
N I I GR +G+ T N K +++ +E
Sbjct 609 QNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLRE 651
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (44%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFANQIPVYEQQKSVF 310
AM G N + A TG GKT +L H+ Q+G + A + +Q + V
Sbjct 315 AMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVA 374
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+++ R T + G + + + +I+I TP L++ L G+ +L T ++
Sbjct 375 TEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGST-NLKRCTYLV 433
Query 371 FDEC 374
DE
Sbjct 434 LDEA 437
>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3
SV=1
Length=542
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (46%), Gaps = 20/125 (16%)
Query 625 NPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
N + ++F T+ + D + ++ +G P LS G QN + +L
Sbjct 371 NKHSKVLIFTGTKRVADDITRFLRQDGWPALSI--------HGDKQQN------ERDWVL 416
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCF 739
+ FK +G I++AT VA GID+ V+ Y+Y N + I GR A+G+
Sbjct 417 NEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAIT 475
Query 740 LLTSN 744
L T++
Sbjct 476 LFTTD 480
>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum
aestivum OX=4565 PE=2 SV=1
Length=414
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KL+ LC + Y T +++FV TR VD L +
Sbjct 243 LVKRDELTLEGIKQFYVNVEKEEWKLDTLC----DLYETLAITQSVIFVNTRRKVDWLTD 298
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ G + G +QNT + I+ F+ SG +LI T + GID
Sbjct 299 KMRGRDHT------VSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 345
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 346 VQQVSLVINYD 356
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 62/139 (45%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFA 297
KP Q + A+PA M G++ I A TG GKT LL H+ + +G+ V
Sbjct 394 KPTPIQTQ-AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMT 452
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 453 PTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA 512
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 513 NSGRVTNLRRVTYVVLDEA 531
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3
SV=1
Length=552
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/157 (25%), Positives = 62/157 (39%), Gaps = 4/157 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N E PP + + KP Q + A+ G++ I A TG GKT L
Sbjct 117 NFDEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIV 176
Query 281 HLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
H+ P G V+ A + Q + SK+ + R T + G + +
Sbjct 177 HINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDL 236
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ G +L T ++ DE
Sbjct 237 ARGVEIVIATPGRLLDMLESGKT-NLRRVTYLVLDEA 272
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/120 (27%), Positives = 52/120 (43%), Gaps = 17/120 (14%)
Query 625 NPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
N E+ ++F T+ + D + ++ +G P L+ G Q + +L
Sbjct 361 NKESKCLIFTGTKRVADDITKFLRQDGWPALAI--------HGDKQQQ------ERDWVL 406
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
+ F+ G I++AT VA GID+ N VI Y+Y N + GR G+K T
Sbjct 407 NEFR-QGKSPIMVATDVASRGIDVKGINFVINYDYPSNSEDYVHRIGRTGRAGTKGTAYT 465
>sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14
OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1
Length=2157
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/220 (25%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKK-FPQG----QKGKVVFFANQIPVYEQQKSVFSK 312
+N ++CAPTG GKT ++++ H +K+ F G + K+V+ A + + S FS+
Sbjct 524 ENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFSR 583
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT-LMIF 371
V ++G + + +E +I+ TP+ +K + S+S+ L+I
Sbjct 584 RLAPLNMVVKELTG---DMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLII 640
Query 372 DECH--NTSKQHPYNMIMFNYLDQ--------KLGGSSGPLPQVIGLTASVGVGDAKNTD 421
DE H N + ++ L Q ++ G S LP + + + V NTD
Sbjct 641 DEVHLLNDDRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRV----NTD 696
Query 422 EALDYI--CKLCASLDASVIATVKHNL----EELEQVVYK 455
L Y L I +HN E L ++ YK
Sbjct 697 TGLFYFDSSYRPVPLAQQYIGITEHNFAARNELLNEICYK 736
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2
SV=1
Length=1049
Score = 43.9 bits (102), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP + Q + ALP M G++ I A TG GKT +L H+K P G
Sbjct 446 KPMSIQAQ-ALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMA 504
Query 301 PVYE---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
P E Q S K+ + G I G + + ++ +I++ TP +++ L
Sbjct 505 PTRELVVQIHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 564
Query 356 KKGTIPSLSIFTLMIFDEC 374
G I +L T ++ DE
Sbjct 565 SSGKITNLRRVTFLVMDEA 583
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (60%), Gaps = 2/52 (4%)
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
++LIATSVA G+D+ + LV+ Y+ + + GR GRA G K F +T
Sbjct 723 SLLIATSVAARGLDVKELELVVNYDVPNHYEDYVHRVGRTGRA-GRKGFAVT 773
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 62/139 (45%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFA 297
KP Q + A+PA M G++ I A TG GKT LL H+ + +G+ V
Sbjct 394 KPTPIQTQ-AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMT 452
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 453 PTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAA 512
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 513 NSGRVTNLRRVTYVVLDEA 531
>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
OX=318161 GN=rhlB PE=3 SV=1
Length=432
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/189 (28%), Positives = 87/189 (46%), Gaps = 30/189 (16%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRD-------PSNENPK 610
RM DA L FS + E+ D E+ ++ E S++ PS E+ K
Sbjct 185 RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTED-K 243
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+ L +++E++ PE I+F T+ + L +W+EG+ + G+LTG
Sbjct 244 MRLLLTLMEEDW---PEK-AIVFSNTKHSCENLWSWLEGDGH----RVGLLTG------- 288
Query 671 TGMTLPAQKCI--LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+P +K I L+ F SGD ++L+AT VA G+ I+ + V Y+ + +
Sbjct 289 ---DVPQKKRIRILEQF-TSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI 344
Query 729 GRGRARGSK 737
GR G+K
Sbjct 345 GRTGRAGNK 353
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/134 (27%), Positives = 62/134 (46%), Gaps = 13/134 (10%)
Query 250 LALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-----KGKVVFFANQIPVY 303
L+LP + K K+ A TG GKT L+ +HL P Q + + + A P
Sbjct 38 LSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMA---PTR 94
Query 304 EQ--QKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
E Q + + +H G +V + G + V E + + DI+I T +++ +++G I
Sbjct 95 ELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVI 154
Query 361 PSLSIFTLMIFDEC 374
SL+ ++ DE
Sbjct 155 -SLNSIQAVVLDEA 167
>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana
plumbaginifolia OX=4092 PE=2 SV=1
Length=413
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/158 (28%), Positives = 67/158 (42%), Gaps = 17/158 (11%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
+ Q +LVI Y+ + GR G K + S
Sbjct 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINS 382
>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/159 (26%), Positives = 76/159 (48%), Gaps = 15/159 (9%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+KG+N +I PT GKT ++ + + L K + GK V+ + E++ F K +
Sbjct 37 LKGENALIAIPTASGKTLIAEIAIVNRLLK----EGGKAVYLVPLKALAEEKFKEF-KDW 91
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G +V + AT + ++ + DIII T + + L+ G+ + +++ DE
Sbjct 92 EELGLKV---AMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGS-SWIRNVKVLVVDEI 147
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
H + + F + Q L + Q+IGL+A++G
Sbjct 148 HLIGSRDRGATLEF-IITQMLNRA-----QIIGLSATIG 180
>sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methanococcus
vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029
/ OCM 148 / SB) OX=406327 GN=hel308 PE=3 SV=1
Length=751
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/167 (25%), Positives = 71/167 (43%), Gaps = 27/167 (16%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQK-SVFSKYF 314
K KN +IC PT GKT + + +H+ GK F + +K F K +
Sbjct 31 KSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKALASEKFDEFQKKY 90
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E +G +V G + + ++ + +III T + L ++L + I + +L + DE
Sbjct 91 ETYGIKV----GMSIGDYDTKEDLSKYNIIITTSEKL-DSLMRHNIEWIKDLSLAVIDEI 145
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPL--------PQVIGLTASVG 413
H D + GG+ + Q++GL+A+VG
Sbjct 146 HLIG-------------DNERGGTLEVILTKLKNINAQIVGLSATVG 179
>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631
GN=PRP5 PE=3 SV=1
Length=1156
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/139 (31%), Positives = 70/139 (50%), Gaps = 17/139 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFV-KTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+E+ K L IL E Y+ + T++FV + A D LK+ I + ++ + G+
Sbjct 706 SEDTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLLKDLI----RKGYVTMSLHGGK 761
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ +++ + I D FKA G+ I+ ATSVA G+D+ Q LVI Y+ ++
Sbjct 762 DQVDRD--------ETISD-FKA-GNVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDY 811
Query 725 IQTRGR-GRARGSKCFLLT 742
+ GR GRA G K +T
Sbjct 812 VHRAGRTGRA-GQKGTCIT 829
Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK-----KFPQGQKGKVVFFANQIPV-- 302
A+PA M G++ I A TG GKT LL H+K + +G G ++ ++ V
Sbjct 506 AMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTRELAVQI 565
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTI 360
Y + + + + G R + G + + ++ + DI++ TP L++ L G +
Sbjct 566 YREMRP----FIKALGLRAACVYGGAPISEQIAEMKKTADIVVATPGRLIDLLTANSGRV 621
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 622 TNLYRVTYLVLDEA 635
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2
PE=3 SV=2
Length=562
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP Q + A+ G++ I A TG GKT L H+ PQ Q G V+ A
Sbjct 149 KPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAP 208
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q ++ SK+ + R T + G + + + +I I TP L++ L+ G
Sbjct 209 TRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAG 268
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 269 KT-NLKRVTYLVLDEA 283
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ D + ++ +G P L+ G QN + +LD F+
Sbjct 378 LVFASTKRTCDEITTYLRSDGWPALAI--------HGDKEQN------ERDWVLDEFR-K 422
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLT 742
G +I++AT VA GID+ VI Y+ GN+ + I GRG A G+ T
Sbjct 423 GKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFT 479
>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB
PE=3 SV=1
Length=437
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/185 (29%), Positives = 86/185 (46%), Gaps = 29/185 (16%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRDPSNE--NPKLED-- 613
RM DA L FS + E+ D E+ ++ E S++ E P +E+
Sbjct 185 RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEEKM 244
Query 614 --LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L +L+E++ PE I+F T+ + + +W+EG+ + G+LTG
Sbjct 245 PLLLSLLEEDW---PEK-AIVFSNTKHSCEKVWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKC--ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+P +K IL+ F SGD ++L+AT VA G+ IA + V Y+ + + G
Sbjct 289 --DVPQKKRLRILEQF-TSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIG 345
Query 730 R-GRA 733
R GRA
Sbjct 346 RTGRA 350
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3
SV=2
Length=947
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (42%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q + ALP M G++ I A TG GKT +L H+K P G
Sbjct 307 KPMPIQAQ-ALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMA 365
Query 301 PVYE---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
P E Q S K+ + G I G + + ++ +I++ TP +++ L
Sbjct 366 PTRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCT 425
Query 356 KKGTIPSLSIFTLMIFDEC 374
G I +L T ++ DE
Sbjct 426 SSGKITNLRRVTFLVMDEA 444
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (42%), Gaps = 38/218 (17%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL-ESVSRDPSNENPK 610
L+++ R+ D L+ K SNV+ DE ++ L FE +++ + E P+ E
Sbjct 281 LLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPPTGERQT 340
Query 611 L------------------EDLCFILQEEYHLNPETIT--ILFVKTR----ALVDALKNW 646
L D F+ E IT IL+V+ R AL+D L
Sbjct 341 LMFSATFPHDIQHLARDFLHDYIFLSVGRVGSTSENITQRILYVENRDKNSALLDLLAAS 400
Query 647 IEGNPKLSFLKPG----------ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ N L F++ I+ T + + ++ L AF+ SG NIL+A
Sbjct 401 ND-NLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFR-SGRANILVA 458
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
T+VA G+DI VI Y+ +V + GR GRA
Sbjct 459 TAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRA 496
>sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=10090
GN=Polq PE=1 SV=2
Length=2544
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (48%), Gaps = 13/130 (10%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GKN + APT GKT V+ L+ LK+ + +K K +F + V +++K F
Sbjct 105 LEGKNLVYSAPTSAGKTLVAELLI---LKRVLETRK-KALFILPFVSVAKEKKCYLQSLF 160
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILT---PQILVNNLKKGTIPSLSIFTLMIF 371
+ G +V G G+T+ P Q + DI + T LVN L + + + +++
Sbjct 161 QEVGLKVDGYMGSTS---PTGQF-SSLDIAVCTIERANGLVNRLIEEN--KMDLLGMVVV 214
Query 372 DECHNTSKQH 381
DE H H
Sbjct 215 DELHMLGDSH 224
>sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis
thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1
Length=414
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/161 (28%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 243 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 298
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 299 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 345
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
+ Q +LVI ++ N + I GR +G +TS
Sbjct 346 VQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTS 386
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex
subunit 3-like OS=Dictyostelium discoideum OX=44689 GN=ascc3l
PE=3 SV=1
Length=2237
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 11/125 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-------KVVFFANQIPVYEQQKSVFS 311
N ++ APT GKT V++L H + K G K+V+ A + ++ FS
Sbjct 569 NLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFS 628
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K + +G V ++G +++ +QI E II+ TP+ + K G + L+I
Sbjct 629 KRLKSYGIVVNELTG--DQSLTNKQISETQ-IIVTTPEKWDIITRKSGDRAYTQLVKLII 685
Query 371 FDECH 375
DE H
Sbjct 686 IDEIH 690
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query 259 NTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
N I APT GKT ++L+ C F Q K KVV+ A P+ + +
Sbjct 1415 NAFISAPTNSGKTVCAEIALIRC------FKQNPKAKVVYLA---PMQDLASVRLKDWSN 1465
Query 316 RHGYRVT---GISGATAENVPVEQIVENNDIIILTPQ---ILVNNLKKGTIPSLSIFTLM 369
+ G + +S T + V +I++ ++II+ + IL K+ +L L+
Sbjct 1466 KFGVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRK--ALQSINLL 1523
Query 370 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
I DE H ++ M + + + +G +VI L++S+
Sbjct 1524 IVDELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSIA 1567
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/139 (26%), Positives = 61/139 (44%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q + ALP M G++ I A TG GKT +L H+K P + G
Sbjct 418 KPMPIQAQ-ALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMA 476
Query 301 PVYEQQKSVFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
P E + ++S K+ + G + G + + ++ +I++ TP +++ L
Sbjct 477 PTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 536
Query 356 KKGTIPSLSIFTLMIFDEC 374
G I +L T ++ DE
Sbjct 537 SSGKITNLRRVTYLVMDEA 555
>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3
PE=3 SV=1
Length=480
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/83 (39%), Positives = 41/83 (49%), Gaps = 3/83 (4%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G G + ++ A+ L+ FK SG NILIAT VA G+DI +LVI Y+ +
Sbjct 327 GYGAIPLHGDLSQTARLGALNKFK-SGSRNILIATDVASRGLDIPAVDLVINYDIPSDSK 385
Query 723 KMIQTRGR-GRA-RGSKCFLLTS 743
I GR RA R K L S
Sbjct 386 SYIHRVGRTARAGRAGKSVALVS 408
>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 21/167 (13%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F +T+A + + N L L G NQ TG LD FKA G
Sbjct 310 TIVFTRTKANAERISNLCN----LLEFSATALHGDLNQNQRTGA--------LDLFKA-G 356
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG- 746
+IL+AT VA G+DI ++VI Y+ + I GR RA R K L S
Sbjct 357 KRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDL 416
Query 747 --VIEKEQI---NMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
++ E + + KE + D+IL L+ + E ++ + K
Sbjct 417 ELILRIEDVLGKKLPKENVDKDAILALRDSVDKANGEVVMELNRRNK 463
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (40%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + PA+KG + I A TG GKT + + L + Q A
Sbjct 89 KPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL--WHDQQPYYACILAPTRE 146
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q K F G R T I G + ++ III TP L+++L+
Sbjct 147 LAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 206
Query 362 SLSIFTLMIFDEC 374
+L ++ DE
Sbjct 207 NLRKLKYLVMDEA 219
>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (31%), Positives = 41/81 (51%), Gaps = 4/81 (5%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSK 737
+L+ F+ +G I++AT VA GID+ N VI Y+ GN+ + I GR A G+
Sbjct 403 VLNEFR-TGRSPIMVATDVAARGIDVKGINFVINYDMPGNIEDYVHRIGRTGRAGATGTA 461
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T + + I++ +E
Sbjct 462 ISFFTEANKTLGAQLISIMRE 482
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 81/194 (42%), Gaps = 17/194 (9%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-----------KP 243
VE ED++ KM T +++ F +E+ E + + + P D + + KP
Sbjct 80 VEHEDVQ-KMSTDEVEQFRKEN-EMKIVGHDVPKPIRTFDEAGFPEYVLKEVKEEGFEKP 137
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQI 300
Q + A+ G++ I A TG GKT L H+ P G V+ A
Sbjct 138 TAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTR 197
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + SK+ R T + G ++ + + +I+I TP L++ L+ G
Sbjct 198 ELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT 257
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 258 -NLKRVTYLVLDEA 270
>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1
Length=414
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (44%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E+ KL+ LC + Y T +++FV TR VD L +
Sbjct 243 LVKRDELTLEGIKQFYVNVEKEDWKLDTLC----DLYETLAITQSVIFVNTRRKVDWLTD 298
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 299 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 345
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +T +
Sbjct 346 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 387
>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/157 (27%), Positives = 74/157 (47%), Gaps = 23/157 (15%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D L +++ L+ I G T+ + T ++ L+ F+ S
Sbjct 452 LTLIFVETKRMADMLSDFL--------LRSKI----GATSIHGDRTQRERERALELFR-S 498
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG---SKCFLLTSN 744
G I++AT+VA G+DI V+ Y+ +V + GR GRA + F N
Sbjct 499 GKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGN 558
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
++ ++ I + KE + W EAV RE +
Sbjct 559 KNIV-RDLIELLKEANQ-----EVPQWLEAVARESMF 589
>sp|P9WMR1|HELY_MYCTU Probable helicase HelY OS=Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=helY PE=1
SV=1
Length=906
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (41%), Gaps = 17/137 (12%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT V L G F+
Sbjct 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALA------AGSKCFYTTP 68
Query 300 IPVYEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ QK + R+G G ++G + N N ++++T ++L N L
Sbjct 69 LKALSNQK--HTDLTARYGRDQIGLLTGDLSVN-------GNAPVVVMTTEVLRNMLYAD 119
Query 359 TIPSLSIFTLMIFDECH 375
+ P+L + ++ DE H
Sbjct 120 S-PALQGLSYVVMDEVH 135
>sp|P9WMR0|HELY_MYCTO Probable helicase HelY OS=Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=helY PE=3
SV=1
Length=906
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (41%), Gaps = 17/137 (12%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT V L G F+
Sbjct 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALA------AGSKCFYTTP 68
Query 300 IPVYEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ QK + R+G G ++G + N N ++++T ++L N L
Sbjct 69 LKALSNQK--HTDLTARYGRDQIGLLTGDLSVN-------GNAPVVVMTTEVLRNMLYAD 119
Query 359 TIPSLSIFTLMIFDECH 375
+ P+L + ++ DE H
Sbjct 120 S-PALQGLSYVVMDEVH 135
>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2
PE=1 SV=1
Length=546
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query 630 TILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F T+ + D + ++ +G P L+ G +Q + +L F+
Sbjct 363 TLIFASTKRMCDDITKYLREDGWPALAI--------HGDKDQR------ERDWVLQEFR- 407
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSN 744
+G I++AT VA GID+ N VI Y+ GN+ + I GR A G+ T
Sbjct 408 NGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQ 467
Query 745 AGVIEKEQINMYKEKMMN 762
+ + I++ +E N
Sbjct 468 NKGLGAKLISIMREANQN 485
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + A+ G++ + A TG GKT L H+ P G V+ A
Sbjct 135 KPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAP 194
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q ++ SK+ R T + G ++ + + ++I+I TP L++ L+ G
Sbjct 195 TRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIG 254
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 255 KT-NLKRVTYLVLDEA 269
>sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440) OX=243232 GN=hel308 PE=3 SV=1
Length=1195
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/196 (26%), Positives = 87/196 (44%), Gaps = 37/196 (19%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQ 299
P+ LE L K KN +I PT GKT + + +HL K P +KG +F
Sbjct 19 PQKKALERGLLD-KNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKG--IFIVPL 75
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ ++ F +ER+G R+ G E+ + + +II T + L ++L +
Sbjct 76 KALASEKYEEFKSKYERYGLRIALSIGDYDEDEDLSKY----HLIITTAEKL-DSLWRHK 130
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPL--------PQVIGLTAS 411
I ++ ++++ DE H + N D+ GG+ L Q+IGL+A+
Sbjct 131 IDWINDVSVVVVDEIH-----------LIN--DETRGGTLEILLTKLKEFNVQIIGLSAT 177
Query 412 VGVGDAKNTDEALDYI 427
+G N DE +++
Sbjct 178 IG-----NPDELAEWL 188
>sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment)
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=355
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R + L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 345 VQQVSLVINYD 355
>sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays
OX=4577 PE=2 SV=1
Length=410
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (47%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E+ KL+ LC + Y T +++FV TR VD L +
Sbjct 239 LVKRDELTLEGIKQFYVNIDKEDWKLDTLC----DLYETLAITQSVIFVNTRRKVDWLTD 294
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 295 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 341
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 342 VQQVSLVINYD 352
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKS 308
AMKG++ I A TG GKT LL H+ P G V+ ++ V QQ++
Sbjct 133 AMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEA 192
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
SK+ + T I G + V + + +I+I TP L++ ++ +L T
Sbjct 193 --SKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNT-NLRRVTY 249
Query 369 MIFDEC 374
++ DE
Sbjct 250 LVLDEA 255
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/81 (31%), Positives = 39/81 (48%), Gaps = 4/81 (5%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSK 737
+L F+ SG I+ AT VA G+D+ VI Y++ G++ + I GR A+G+
Sbjct 386 VLSEFR-SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 444
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T KE N+ +E
Sbjct 445 YTFFTVANARFAKELTNILQE 465
>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/134 (28%), Positives = 65/134 (49%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + DAL +++ I+ T + T ++ L AF +
Sbjct 404 LTLVFVETKRMADALTDFL------------IMQNLSATAIHGDRTQAERERAL-AFFRT 450
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS---KCFLLTSN 744
G N+L+AT+VA G+DI VI Y+ ++ + GR GRA + F N
Sbjct 451 GRANVLVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGN 510
Query 745 AGVIEKEQINMYKE 758
V+ KE +++ +E
Sbjct 511 KNVV-KELVDILEE 523
>sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1
/ JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1
Length=730
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/253 (25%), Positives = 110/253 (43%), Gaps = 35/253 (14%)
Query 234 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
++ + + P+ +E L ++GKN + PT GKT ++ L LK G GK
Sbjct 18 NSGILELYPPQAEAVEKGL--LEGKNLLAAIPTASGKTLLAELAM---LKSVLNG--GKA 70
Query 294 VFFANQIPVYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
++ +P+ F ++ F G RV GIS T + ++ + NDII+ T +
Sbjct 71 LYI---VPLRALASEKFRRFQEFSVLGMRV-GIS--TGDYDRRDEGLGINDIIVATSE-K 123
Query 352 VNNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 409
++L + + ++++ DE H ++ + P I + L + P QV+ L+
Sbjct 124 TDSLLRNETAWMQEISVVVADEVHLIDSPDRGPTLEITLSKLRRM-----NPSCQVLALS 178
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
A+VG N DE L A LDA ++ + + +E V Y + + E +
Sbjct 179 ATVG-----NADE-------LAAWLDAELVLSEWRPTDLMEGVFYNGIFYCKDKEKPVGQ 226
Query 470 KFKYIIAQLMRDT 482
K L+ DT
Sbjct 227 PTKDEAVNLVLDT 239
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 75/291 (26%), Positives = 115/291 (40%), Gaps = 61/291 (21%)
Query 509 YEQWI---VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
Y W+ V A + QM D D R C L+++ R+ D L+
Sbjct 246 YRSWVKPYVVYGGAPIGQQMRDMD---RGCN---------------LLVATPGRLNDLLE 287
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN----------PK----- 610
K NV+ DE ++ L FE +++ + PS + P+
Sbjct 288 RGKISLVNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPSVNDRQTLMFSATFPREIQHL 347
Query 611 ----LEDLCFILQEEYHLNPETI--TILFV----KTRALVDALKNWIEGNPKLSFLKPG- 659
L+D F+ E I +LFV K AL+D L N I+G L F++
Sbjct 348 ARDFLKDYIFLSVGRVGSTSENIQQKVLFVEDYDKNSALLDILINEIDG-LTLVFVETKR 406
Query 660 ---------ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
I+ T + T ++ L AF+ +G NIL+AT+VA G+DI
Sbjct 407 MADQLTDFLIVQNFKATAIHGDRTQAERERALHAFR-NGIANILVATAVAARGLDIPNVT 465
Query 711 LVILYEYVGNVIKMIQTRGR-GRAR--GSKCFLLTSNAGVIEKEQINMYKE 758
VI Y+ ++ + GR GRA G SN+ I KE +++ E
Sbjct 466 NVINYDLPTDIDDYVHRIGRTGRAGNVGVATSFFNSNSMNIAKELMDLLTE 516
>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 20/138 (14%)
Query 630 TILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F T+ + D + ++ +G P L+ G +Q + +L F+
Sbjct 363 TLIFASTKRMCDDITKYLREDGWPALAI--------HGDKDQR------ERDWVLQEFR- 407
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSN 744
+G I++AT VA GID+ N VI Y+ GN+ + I GR A G+ T
Sbjct 408 NGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQ 467
Query 745 AGVIEKEQINMYKEKMMN 762
+ + I++ +E N
Sbjct 468 NKGLGAKLISIMREANQN 485
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + A+ G++ + A TG GKT L H+ P G V+ A
Sbjct 135 KPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAP 194
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q ++ SK+ R T + G ++ + + ++I+I TP L++ L+ G
Sbjct 195 TRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIG 254
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 255 KT-NLKRVTYLVLDEA 269
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2
PE=1 SV=2
Length=2163
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/199 (25%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLIC----EHHL 282
P SE + N P + + + A +G N +ICAPTG GKT ++LL HH
Sbjct 492 PSSETTSLN---PIQSKVFH-----AAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHY 543
Query 283 KKFPQGQK-----GKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
P+ +K K+V+ A + ++Q F + G +V ++G + + +QI
Sbjct 544 N--PKTKKLNLSAFKIVYIAPLKALVQEQVREFQRRLAFLGIKVAELTGDS--RLSRKQI 599
Query 338 VENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMIFDECHNT-SKQHPY--NMIMFNYLDQ 393
E +++ TP+ + + + + L+I DE H + P +++ +
Sbjct 600 DETQ-VLVSTPEKWDITTRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWAS 658
Query 394 KLGGSSGPLPQVIGLTASV 412
K G P++IGL+A++
Sbjct 659 KYGQE---YPRIIGLSATL 674
>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/143 (29%), Positives = 68/143 (48%), Gaps = 15/143 (10%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVF---- 295
P Q E +++ ++ + CAPTG GKT L+ + K G KG ++
Sbjct 146 PTPIQCEAIPISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAVGTGVKGLIISPTKE 205
Query 296 FANQIPVYEQQKSVFSKYF--ERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQIL 351
ANQI +++ + + F ++ V +S + A + QIV + DIII TP L
Sbjct 206 LANQI--FDECSKLAQRIFLEKKRPLSVALLSKSLAAKLK-NQIVSDKKYDIIISTPLRL 262
Query 352 VNNLKKGTIPSLSIFTLMIFDEC 374
++ +K ++ LS +IFDE
Sbjct 263 IDIVKSESL-DLSAVKYLIFDEA 284
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 18/106 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
I+F T+ D + +++ EG P L+ G QN + +L F+ S
Sbjct 364 IIFASTKRTCDEITSYLRTEGWPALAI--------HGDKAQNE------RDWVLAEFR-S 408
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
G I++AT VA GID+ N VI Y+ GN+ + GR GRA
Sbjct 409 GRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRA 454
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/194 (25%), Positives = 73/194 (38%), Gaps = 32/194 (16%)
Query 212 FYQEDPECQNLSE----------------NSCP-----------PSEVSDTNLYSPF-KP 243
FYQE P+ +SE + P PS V D F KP
Sbjct 77 FYQEHPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKP 136
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQI 300
Q + A+ G++ I A TG GKT L H+ P G V+ A
Sbjct 137 TGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTR 196
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + SK+ R T + G ++ + + +I+I TP L++ L+ G
Sbjct 197 ELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKT 256
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 257 -NLKRVTYLVLDEA 269
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium
discoideum OX=44689 GN=DDB_G0278827 PE=3 SV=1
Length=1816
Score = 42.7 bits (99), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 138/352 (39%), Gaps = 68/352 (19%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
FKP +Q+EL K ++ +ICA T GKTF+S E LK + G VVF
Sbjct 816 FKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILK---ESNDGIVVFVC--- 869
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
P ++++ R+ I+ + + V + + I T QIL+ + I
Sbjct 870 PTKALVNQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLEI 929
Query 361 PSLSIFT--------LMIFDECHNTSKQHP----YNMIMFNYLDQKLGGSSGPLPQVIGL 408
LSI +IFDE H + +++FN P P + L
Sbjct 930 LFLSIMNTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVFN-----------PAP-FLAL 977
Query 409 TASVG-VGDAKNTDEALD--------------------YICKLCASLDASVIATVKHNLE 447
+A++G + D N + +D ++C+ A + S + +E
Sbjct 978 SATLGNLTDFHNFLKKIDPNRKVSLIHYQSRFNDLKNFFLCQTPAKDNKSFPT---YTIE 1034
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN-------LSQIQ 500
L + QK + S IS K I + ++ + L +++ + N + I
Sbjct 1035 PLHPMATLDQK--KTGLSDISPDLKLIAGEAIQMYQVLKEKLGYEKVNHLDPVKFFANIP 1092
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
N++F +K I + +P E+ + KAL TS KYND+L
Sbjct 1093 NKQFNLEKQHIEIYQAELKQFYTNLPSMTEKQLVVKAL---TS--PKYNDSL 1139
>sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R + L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRTRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYE 716
+ Q +LVI Y+
Sbjct 345 VQQVSLVINYD 355
>sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R + L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +T +
Sbjct 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD 386
>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3
SV=2
Length=397
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (45%), Gaps = 16/119 (13%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T ++F T+A V NW+ G + S + G M + I+ F+
Sbjct 264 TQAVIFCNTKAKV----NWLAGQMRKSNFTVAAMHG--------DMKQEDRDSIMKEFR- 310
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V GID+ Q +LVI Y+ N + I GR +G+ LLTS
Sbjct 311 SGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTS 369
>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486
Score = 42.0 bits (97), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 52/116 (45%), Gaps = 15/116 (13%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F +T+A + I G L L G NQ TG LD FKA G
Sbjct 309 TIVFTRTKANAE----RISGLCNLLEFSATALHGDLNQNQRTGA--------LDLFKA-G 355
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
+IL+AT VA G+DI +LVI Y+ + I GR RA R K L S
Sbjct 356 KKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVS 411
Score = 37.4 bits (85), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (40%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + PA++GK+ I A TG GKT + + L + Q A
Sbjct 88 KPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRL--WHDQQPYYACILAPTRE 145
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q K F G R T I G ++ III TP L+++L+
Sbjct 146 LAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 205
Query 362 SLSIFTLMIFDEC 374
+L ++ DE
Sbjct 206 ALRKLQFLVMDEA 218
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3
SV=2
Length=494
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (51%), Gaps = 4/81 (5%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSK 737
+L FK SG I+ AT VA G+D+ VI Y++ G++ + I GR A+G+
Sbjct 378 VLSEFK-SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTA 436
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T+ K+ IN+ +E
Sbjct 437 YTFFTAANARFAKDLINILEE 457
>sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis
thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1
Length=412
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (47%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E+ KLE LC + Y T +++FV TR VD L +
Sbjct 241 LVKRDELTLEGIKQFYVNVEKEDWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 296
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 297 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 343
Query 706 IAQCNLVILYE 716
+ Q +LVI ++
Sbjct 344 VQQVSLVINFD 354
>sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp9
PE=3 SV=1
Length=595
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/140 (26%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQI 300
KP + Q E A++GK+ + A TG GKT L+ I E LK+ + + +F +
Sbjct 36 KPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLV 95
Query 301 PVYEQQKSVF------SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
P E + V+ + + +H R ++ +++ V +++ DI+I TP V +
Sbjct 96 PTRELAQQVYNVLEKLTAFCSKH-IRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVH 154
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+ G +P L ++ DE
Sbjct 155 VASGVLP-LDKLKFLVIDEA 173
>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592
GN=PRP5 PE=3 SV=2
Length=913
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (59%), Gaps = 3/58 (5%)
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAG 746
NILIATS+A G+D+ NLVI YE ++ + GR GRA +G+ ++S G
Sbjct 628 NILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQG 685
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (8%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
A+PA M G++ I A TG GKT +L H++ P +KG P E +
Sbjct 347 AIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELALQI 406
Query 310 FSKYFERHGYRVTGIS-----GATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPS 362
+ H + IS G ++ + ++ + II+ TP +++ L G + +
Sbjct 407 HKEL--NHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTN 464
Query 363 LSIFTLMIFDEC 374
L T ++ DE
Sbjct 465 LQRVTYLVLDEA 476
>sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R + L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+ Q +LVI Y+ N + I GR +G +T +
Sbjct 345 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKD 386
>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DED1 PE=3 SV=1
Length=696
Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L + H + ++++FV+T+ + D+L +++ I G T+ + T
Sbjct 450 VLLDILHTHGAGLSLIFVETKRMADSLSDFL------------INQGFPATSIHGDRTQR 497
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
++ L+ F+ SG IL+AT+VA G+DI V+ Y+ ++ + GR GRA
Sbjct 498 EREKALEMFR-SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGN 556
Query 736 SK---CFLLTSNAGVIEKEQINMYKE 758
+ F N GV+ ++ +++ KE
Sbjct 557 TGIATAFFNRGNRGVV-RDLLDLLKE 581
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760
Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/137 (25%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query 242 KPRNYQLELALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q + ALP + G++ I A TG GKT +L H+ P+ Q+ +
Sbjct 250 KPTAIQCQ-ALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICA 308
Query 301 PVYEQQKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
P E +F K+ + +G RV+ + G +++ +++ +I++ TP L++ LK
Sbjct 309 PTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKM 368
Query 358 GTIPSLSIFTLMIFDEC 374
+ ++ + ++ DE
Sbjct 369 KAL-TMMRASYLVLDEA 384
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/123 (31%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E L ++L++ + E ++F +A VD IE L+ K L G +Q +
Sbjct 458 EKLPWLLEKLPGMIDEGDVLVFASKKATVDE----IEAQLTLNSFKVAAL--HGDKDQAS 511
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
M L FK SG H++LIAT VA G+DI V+ Y+ ++ + GR
Sbjct 512 RME------TLQKFK-SGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRT 564
Query 731 GRA 733
GRA
Sbjct 565 GRA 567
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1
PE=3 SV=1
Length=676
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + DAL +++ L+ P +T + ++ L+ F+ S
Sbjct 454 LTLIFVETKRMADALSDFL-----LNQRFPATAIHGDRTQRE-------RERALEMFR-S 500
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
G IL+AT+VA G+DI VI Y+ ++ + GR GRA + F N
Sbjct 501 GRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 560
Query 745 AGVIEKEQINMYKE 758
GV+ +E I++ KE
Sbjct 561 RGVV-RELIDLLKE 573
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 102/252 (40%), Gaps = 44/252 (17%)
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
+Y L+++ R+ D L+ +NV+ DE ++ L FE +++ + S PS
Sbjct 290 RYGCNLLVATPGRLTDLLERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEGSDMPSV 349
Query 607 ENPK-------------------LEDLCFILQEEYHLNPETIT--ILFV----KTRALVD 641
+N + L+D F+ E IT IL+V K L+D
Sbjct 350 DNRQTLMFSATFPSEIQHLASDFLKDYVFLSVGRVGSTSENITQKILYVEDFDKNDTLLD 409
Query 642 ALKNWIEG------------NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
L EG + FL I+ G T + T ++ L AFK +G
Sbjct 410 LLAASNEGLTLIFVETKRAADSLTDFL---IMEGFKATAIHGDRTQGERERALSAFK-TG 465
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAG-- 746
IL+AT+VA G+DI VI ++ ++ + GR GRA + N G
Sbjct 466 RATILVATAVAARGLDIPNVTHVINFDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNK 525
Query 747 VIEKEQINMYKE 758
+ KE +++ E
Sbjct 526 NVAKELVSLLSE 537
>sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12
OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1
Length=2171
Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/184 (28%), Positives = 81/184 (44%), Gaps = 34/184 (18%)
Query 222 LSENSCPPSEVSD------TNLYSP-----------FKPRNYQLELALPAMKGKNTIICA 264
L E PP+E+ D T L +P F P Q+ L N ++ A
Sbjct 1315 LPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVL-YNTNDNVLVAA 1373
Query 265 PTGCGKTFVS--LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH-GYRV 321
PTG GKT + ++ HH + P +VV+ A + ++Q ++ F + G RV
Sbjct 1374 PTGSGKTICAEFAILRNHH--EGPDATM-RVVYIAPLEAIAKEQFRIWEGKFGKGLGLRV 1430
Query 322 TGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLK-KGTIPSLSIFTLMIFDECHNT 377
++G TA ++ +++E III TP+ L K + + +S+F I DE H
Sbjct 1431 VELTGETALDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF---IVDELHLI 1484
Query 378 SKQH 381
QH
Sbjct 1485 GGQH 1488
Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/128 (27%), Positives = 56/128 (44%), Gaps = 12/128 (9%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLK-------KFPQGQKGKVVFFANQIPVYEQQKS 308
K +N ++CAPTG GKT V++L L+ + G K+V+ A + +
Sbjct 519 KAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDY-KIVYVAPMKALVAEVVG 577
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFT 367
S + +G V +SG + + +E II+ TP+ + K G +
Sbjct 578 NLSNRLKDYGVIVRELSG---DQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVR 634
Query 368 LMIFDECH 375
L+I DE H
Sbjct 635 LLIIDEIH 642
>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/201 (26%), Positives = 94/201 (47%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ K++ +E V D +L +
Sbjct 398 ARDFLKDYIFLSVGRVG--STSENITQ----KVEYVEDV------------DKRSVLLDI 439
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L +++ I T+ + T ++
Sbjct 440 LHSHANGLTLIFVETKRMADSLSDFL------------INQNFPATSIHGDRTQRERERA 487
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK--- 737
L+ F+ +G IL+AT+VA G+DI VI Y+ +V + GR GRA +
Sbjct 488 LEFFR-NGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIAT 546
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N G++ +E +++ KE
Sbjct 547 AFFNRGNRGIV-RELMDLLKE 566
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1
PE=3 SV=1
Length=672
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/274 (22%), Positives = 108/274 (39%), Gaps = 79/274 (29%)
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
Y W+ +AC+V+ D ++ R ++ + D L+++ R+KD LD K
Sbjct 294 YRSWV----RACVVYGGADIGQQMR----------NMDRGCD-LLVATPGRLKDLLDRGK 338
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELE------------------------------ 598
+N+R DE ++ L FE +++ +
Sbjct 339 VSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARD 398
Query 599 --------SVSRDPSNENPKLEDLCFILQEE--------YHLNPETITILFVKTRALVDA 642
SV R S + + ++ +E N +TI+F +T+ + D
Sbjct 399 FLKDYVFLSVGRVGSTSENITQKILYVEDDEKKSVILDLLSANENGLTIVFTETKRMADN 458
Query 643 LKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L +++ +G P + G +Q ++ L AFK +G IL+AT+VA
Sbjct 459 LADYLYDQGFPATAI--------HGDRSQYE------REKALAAFK-NGAAPILVATAVA 503
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
G+DI + VI Y+ ++ + GR GRA
Sbjct 504 ARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRA 537
>sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Drosophila melanogaster OX=7227 GN=Brr2 PE=2
SV=4
Length=2142
Score = 42.4 bits (98), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (46%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKF------PQGQKGKVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+LL + K Q K+++ A + ++ F
Sbjct 497 ENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFG 556
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
+ + V+ ++G + EQI +I+ TP+ + K G +S+ L+I
Sbjct 557 RRLACYNLTVSELTG--DHQLTREQIAATQ-VIVCTPEKWDIITRKGGERTFVSLVRLVI 613
Query 371 FDECH 375
DE H
Sbjct 614 IDEIH 618
>sp|Q5UYM9|HELS_HALMA ATP-dependent DNA helicase Hel308 OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966
/ VKM B-1809) OX=272569 GN=hel308 PE=3 SV=1
Length=799
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 90/194 (46%), Gaps = 19/194 (10%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
P + D + + P+ +E + +G+N + PT GKT ++ L L +G
Sbjct 14 PDHLRDDGIEELYPPQAEAVEAGV--TEGENLVASIPTASGKTLIAELAM---LSSVARG 68
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
GK ++ + ++++ F + FE++G + G+S E+ + + DI++ T
Sbjct 69 --GKALYIVPLRALASEKQADFEE-FEQYGLDI-GVSTGNYESEG--GWLADKDIVVATS 122
Query 349 QILVNNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
+ V++L + P + T ++ DE H + ++ P + L ++L P Q +
Sbjct 123 EK-VDSLVRNDAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAKL-RRL----NPDLQTV 176
Query 407 GLTASVGVGDAKNT 420
L+A++G +A T
Sbjct 177 ALSATIGNAEALAT 190
>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=2
Length=514
Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G QN + +L+ FK +
Sbjct 353 LIFTGTKRVADDITRFLRQDGWPALSI--------HGDKQQN------ERDWVLNEFK-T 397
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA GID+ V Y+Y N I I GR +G+ L T++
Sbjct 398 GKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDN 457
Query 746 GVIEKEQINMYKE 758
++ +N+ E
Sbjct 458 QKQARDLVNVLTE 470
>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/131 (27%), Positives = 57/131 (44%), Gaps = 13/131 (10%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF------ANQIPVY 303
A+P + G + A TG GKT L+ L++ G + + A Q +
Sbjct 79 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKF 138
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ F+ +++ I G + E++ EN DIII TP LV++L + +L
Sbjct 139 AQQLGKFTDL------KISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNL 192
Query 364 SIFTLMIFDEC 374
++FDE
Sbjct 193 RTVEYVVFDEA 203
>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 43/181 (24%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
D +N R E+ D +R ++ ++ LE + D SN+
Sbjct 337 DLSANHRITQIVEVVSDFEKR-DKMIKHLEKIMEDRSNK--------------------- 374
Query 629 ITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++F T+ + D + ++ +G P LS G Q + +L+ FK
Sbjct 375 -ILIFTGTKRIADEITRFLRQDGWPALSI--------HGDKQQQ------ERDWVLNEFK 419
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
A G I++AT VA GID+ V+ Y+Y N I I GR A+G+ T+
Sbjct 420 A-GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTT 478
Query 744 N 744
+
Sbjct 479 D 479
>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2
SV=2
Length=851
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/131 (27%), Positives = 57/131 (44%), Gaps = 13/131 (10%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF------ANQIPVY 303
A+P + G + A TG GKT L+ L++ G + + A Q +
Sbjct 79 AMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKF 138
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ F+ +++ I G + E++ EN DIII TP LV++L + +L
Sbjct 139 AQQLGKFTDL------KISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNL 192
Query 364 SIFTLMIFDEC 374
++FDE
Sbjct 193 RTVEYVVFDEA 203
>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3
SV=3
Length=637
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L + N +TI+F +T+ + D L +++ +G P + G +Q
Sbjct 416 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAI--------HGDRSQYE--- 464
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
++ L AFK SG IL+AT+VA G+DI + V+ Y+ G++ + GR GRA
Sbjct 465 ---REKALAAFK-SGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGRTGRA 520
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/114 (31%), Positives = 57/114 (50%), Gaps = 18/114 (16%)
Query 623 HLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ N E +TI+F +T+ + D L +++ +G P + G +Q ++
Sbjct 428 NANSEGLTIVFTETKRMADNLADFLYDQGFPATAI--------HGDRSQYE------REK 473
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
L AFK SG IL+AT+VA G+DI + VI Y+ ++ + GR GRA
Sbjct 474 ALAAFK-SGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRA 526
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151
Score = 42.0 bits (97), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP + Q + M G++ I A TG GKT LL H+ P+ G+ + P
Sbjct 531 KPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSP 590
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E + FSK G R + G + + + ++ DI++ TP +++ L
Sbjct 591 TRELALQIHVECKKFSKVL---GLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDIL 647
Query 356 --KKGTIPSLSIFTLMIFDEC 374
I +L T ++ DE
Sbjct 648 CANNRRITNLRRVTFLVLDEA 668
>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A P
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLA---P 82
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E V FSK+ G V + G +V + + + I++ TP L+++L
Sbjct 83 TRELAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+GT+ LS + ++ DE
Sbjct 141 KRGTL-DLSKLSGLVLDEA 158
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R + L N
Sbjct 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351
>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A P
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLA---P 82
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E V FSK+ G V + G +V + + + I++ TP L+++L
Sbjct 83 TRELAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+GT+ LS + ++ DE
Sbjct 141 KRGTL-DLSKLSGLVLDEA 158
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R + L N
Sbjct 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351
>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310
GN=deaD PE=3 SV=2
Length=629
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A P
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLA---P 82
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E V FSK+ G V + G +V + + + I++ TP L+++L
Sbjct 83 TRELAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+GT+ LS + ++ DE
Sbjct 141 KRGTL-DLSKLSGLVLDEA 158
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R + L N
Sbjct 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351
>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp2 PE=3 SV=1
Length=572
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G QN + +L+ FK +
Sbjct 400 LIFTGTKRVADDITRFLRQDGWPALSI--------HGDKQQN------ERDWVLNEFK-T 444
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA GID+ V Y+Y N I I GR +G+ L T++
Sbjct 445 GKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTAITLFTTDN 504
Query 746 GVIEKEQINMYKE 758
++ +N+ E
Sbjct 505 QKQARDLVNVLTE 517
>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A P
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLA---P 82
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E V FSK+ G V + G +V + + + I++ TP L+++L
Sbjct 83 TRELAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+GT+ LS + ++ DE
Sbjct 141 KRGTL-DLSKLSGLVLDEA 158
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R + L N
Sbjct 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351
>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++G+T A+ I+ F+A GD ILI T V G+D A N V+ Y+ G+ + G
Sbjct 510 HSGLTDSARSSIMRKFRA-GDIWILITTDVLARGVDFAGVNGVVNYDVPGSSAGYVHRAG 568
Query 730 R-GRA 733
R GRA
Sbjct 569 RTGRA 573
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQ-KGKVVFFAN 298
KP Q + A+PA M G++ I A TG GKT LL + H L + P G+ +G +
Sbjct 362 KPTPIQAQ-AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMT 420
Query 299 QIPVYEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
Q + K F + RV + G T + + ++ +II+ TP +++ L
Sbjct 421 PTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGA 480
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 481 NNGRVTNLRRVTYVVIDEA 499
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 36/64 (56%), Gaps = 3/64 (5%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKC 738
I++ FK +G +L+ATSVA G+D+ Q LV+ Y + + GR GRA G+K
Sbjct 628 SIINDFK-NGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRA-GNKG 685
Query 739 FLLT 742
+ T
Sbjct 686 YAYT 689
>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3
SV=2
Length=537
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/137 (28%), Positives = 60/137 (44%), Gaps = 8/137 (6%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFAN 298
P Q E + +G++ I CAPTG GKT L+ L P+ G +G V+ N
Sbjct 129 PTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTN 188
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKK 357
++ + Q + VT +S A + I N D++I TP L++ +KK
Sbjct 189 ELAI--QIYQTLAPMCRGSNLNVTLLSKQVASKISSSIISANKFDVLICTPLRLIDLVKK 246
Query 358 GTIPSLSIFTLMIFDEC 374
+ LS ++ DE
Sbjct 247 EQV-DLSKVEHLVIDEA 262
>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/168 (29%), Positives = 76/168 (45%), Gaps = 26/168 (15%)
Query 569 DFFSN--VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
DF SN A G DL + E +QE S++ L DL +E +
Sbjct 358 DFMSNYIFLAVGRVGSSTDLITQRVEFVQE--------SDKRSHLMDLLHAQRETQ--DK 407
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+++T++FV+T+ D L+NW+ N F P +T Q ++ L +FK
Sbjct 408 QSLTLVFVETKRGADTLENWLCMN---EF--PATSIHGDRTQQE-------REVALRSFK 455
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+G IL+AT VA G+DI V+ ++ ++ + GR GRA
Sbjct 456 -TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRA 502
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 11/126 (9%)
Query 258 KNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQKS 308
++ + CA TG GKT +S ++ + H+++ P+G + F P E Q
Sbjct 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVER-PRGSRAVYPFAVILSPTRELACQIHD 247
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ + G +V G T + + ++ DI++ TP L + L++ + S+ +
Sbjct 248 EAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARV-SMQMIRF 306
Query 369 MIFDEC 374
+ DE
Sbjct 307 LALDEA 312
>sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 242 LVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 297
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 298 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 344
Query 706 IAQCNLVILYE 716
+ Q +LVI ++
Sbjct 345 VQQVSLVINFD 355
>sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis
thaliana OX=3702 GN=EIF4A1 PE=1 SV=1
Length=412
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (46%), Gaps = 17/131 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ + E KLE LC + Y T +++FV TR VD L +
Sbjct 241 LVKRDELTLEGIKQFYVNVEKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTD 296
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
K+ + G +QNT + I+ F+ SG +LI T + GID
Sbjct 297 ------KMRSRDHTVSATHGDMDQNT------RDIIMREFR-SGSSRVLITTDLLARGID 343
Query 706 IAQCNLVILYE 716
+ Q +LVI ++
Sbjct 344 VQQVSLVINFD 354
>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/130 (27%), Positives = 56/130 (43%), Gaps = 6/130 (5%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQIPVYE---Q 305
A+P + G++ ++ APTG GKT L HHL+ P+ + F +P E Q
Sbjct 60 AIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQ 119
Query 306 QKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
K R + V G + G + ++ + I+I TP L+++LK
Sbjct 120 VYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHK 179
Query 365 IFTLMIFDEC 374
+IFDE
Sbjct 180 NLRWVIFDEA 189
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium
leprae (strain TN) OX=272631 GN=helY PE=3 SV=1
Length=920
Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 60/137 (44%), Gaps = 17/137 (12%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT V HL G+ F+
Sbjct 15 PFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAV--HLALAAGGK----CFYTTP 68
Query 300 IPVYEQQKSVFSKYFERHGY-RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ QK ++ R+G R+ ++G + N ++ ++++T ++L N L
Sbjct 69 LKALSNQK--YTDLTARYGRNRIGLLTGDQSVN-------GDSPVVVMTTEVLRNMLYAD 119
Query 359 TIPSLSIFTLMIFDECH 375
+ +L + ++ DE H
Sbjct 120 SF-ALQGLSHVVMDEVH 135
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
++ + APTG GKT ++ L K Q + + + +Q +VFS Y E
Sbjct 241 RDVCVSAPTGSGKTLAFVIPVVQALSKRVVRQVRALAVLPTK-ELAQQVSNVFSAYTEGS 299
Query 318 GYRVTGISGA---TAENVPVEQI---VENN--DIIILTPQILVNNLKKGTIPSLSIFTLM 369
+V I+G AE + +I V ++ DI++ TP LV+++ K + SL +
Sbjct 300 SLKVVMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHINKNSSFSLQHLRFL 359
Query 370 IFDEC 374
I DE
Sbjct 360 IIDEA 364
>sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP7 PE=3 SV=1
Length=806
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (6%)
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----G 731
P + L+AF A D +LI T ++ G+D+ +LVI Y+ V + GR G
Sbjct 504 PVRSATLNAFSACKDPAVLITTDISSRGLDVPAVDLVIEYDPAFAVPDHVHRIGRTARAG 563
Query 732 RARGSKCFLL 741
RA + FLL
Sbjct 564 RAGKAVLFLL 573
>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB
PE=3 SV=1
Length=436
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (46%), Gaps = 31/186 (17%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRD-------PSNENPK 610
RM DA L FS + E+ D E+ ++ E S++ PS E K
Sbjct 185 RMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEE-K 243
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+ L +L+E++ PE I+F T+ + + +W+EG+ + G+LTG
Sbjct 244 MPLLLSLLEEDW---PEK-AIVFSNTKHSCEKVWSWLEGDGH----RAGLLTG------- 288
Query 671 TGMTLPAQKC--ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+P +K IL+ F GD +IL+AT VA G+ I+ + V Y+ + +
Sbjct 289 ---DVPQKKRLRILEQF-TKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRI 344
Query 729 GR-GRA 733
GR GRA
Sbjct 345 GRTGRA 350
>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/139 (26%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +++ P+ + +++ A P
Sbjct 28 KPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--PELRAPQILVLA---P 82
Query 302 VYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
E V FSK+ G V + G +V + + + I++ TP L+++L
Sbjct 83 TRELAVQVAEAMTEFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHL 140
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+GT+ LS + ++ DE
Sbjct 141 KRGTL-DLSKLSGLVLDEA 158
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R + L N
Sbjct 294 GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 17/115 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 330 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI--------HGDKSQ------ 375
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y + + GR
Sbjct 376 PERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=ded1 PE=3 SV=1
Length=678
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/201 (25%), Positives = 94/201 (47%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ+ E +++++ S +L +
Sbjct 398 ARDFLKDYVFLSVGRVG--STSENITQKVE-YVEDIDKRS---------------VLLDI 439
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L +++ I T+ + T ++
Sbjct 440 LHTHGAGLTLIFVETKRMADSLSDFL------------INQNFPATSIHGDRTQRERERA 487
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG---SK 737
L+ F+ +G IL+AT+VA G+DI V+ Y+ ++ + GR GRA S
Sbjct 488 LEMFR-NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N GV+ ++ I + KE
Sbjct 547 AFFNRGNRGVV-RDLIELLKE 566
>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427
Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 1/90 (1%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++GM+ + +FK G IL+AT + GIDI + N+VI Y+ + + G
Sbjct 319 HSGMSQEERLTRYKSFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
R G+K +T A + E +N +E+
Sbjct 378 RAGRFGTKGLAITFVASASDSEVLNQVQER 407
>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427
Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/90 (29%), Positives = 44/90 (49%), Gaps = 1/90 (1%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++GM+ + +FK G IL+AT + GIDI + N+VI Y+ + + G
Sbjct 319 HSGMSQEERLTRYKSFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVG 377
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
R G+K +T A + E +N +E+
Sbjct 378 RAGRFGTKGLAITFVASASDSEVLNQVQER 407
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=9606
GN=POLQ PE=1 SV=2
Length=2590
Score = 41.2 bits (95), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (47%), Gaps = 13/130 (10%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GKN + APT GKT V+ L+ LK+ + +K K +F + V +++K F
Sbjct 106 LEGKNLVYSAPTSAGKTLVAELLI---LKRVLEMRK-KALFILPFVSVAKEKKYYLQSLF 161
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILT---PQILVNNLKKGTIPSLSIFTLMIF 371
+ G +V G G+T+ + + DI + T L+N L + + + +++
Sbjct 162 QEVGIKVDGYMGSTSPSRHFSSL----DIAVCTIERANGLINRLIEEN--KMDLLGMVVV 215
Query 372 DECHNTSKQH 381
DE H H
Sbjct 216 DELHMLGDSH 225
>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ VI Y+Y N + I GR A+G+
Sbjct 429 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTA 487
Query 738 -CFLLTSNA 745
F T NA
Sbjct 488 ITFFTTDNA 496
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (42%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + A+ G++ + A TG GKT L H+ P G V+ A
Sbjct 162 KPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAP 221
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q ++ SK+ + R T + G + + + ++ I TP L++ L+ G
Sbjct 222 TRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAG 281
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 282 RT-NLRRVTYLVLDEA 296
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729
Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 17/115 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 409 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI--------HGDKSQ------ 454
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y + + GR
Sbjct 455 PERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688
Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/201 (25%), Positives = 94/201 (47%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ+ E +++++ S +L +
Sbjct 406 ARDFLKDYIFLSVGRVG--STSENITQKVE-YVEDIDKRS---------------VLLDI 447
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L +++ I T+ + T ++
Sbjct 448 LHTHAGGLTLIFVETKRMADSLSDFL------------INQNFPATSIHGDRTQRERERA 495
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK--- 737
L+ F+ +G IL+AT+VA G+DI VI Y+ ++ + GR GRA +
Sbjct 496 LEMFR-NGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 554
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N GV+ +E + + KE
Sbjct 555 AFFNRGNRGVV-RELLELLKE 574
>sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA
OS=Bacillus subtilis (strain 168) OX=224308 GN=yprA PE=1
SV=1
Length=749
Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 8/122 (7%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F ++R V+ + + I+ +L + G + RG G LP ++ ++ G
Sbjct 291 TIVFARSRVRVEIILSHIQ---ELVKKEIGTKSIRGYR----GGYLPKERREIERGLREG 343
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVI 748
D +++T+ + G+DI Q + ++ Y G+V Q GR GR G ++ +N+ I
Sbjct 344 DILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHGESLIIMVANSTPI 403
Query 749 EK 750
++
Sbjct 404 DQ 405
>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/140 (28%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSL------LICEHHLKKFPQGQKGKVVFF 296
P Q E + ++ I CAPTG GKT L L+ ++ LK G +G ++
Sbjct 143 PTPIQCEAIPITLANRDLIACAPTGSGKTLAFLIPLLQQLVSQNVLKN--HGIRGLIISP 200
Query 297 ANQIPV-YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNN 354
N++ V QQ + SK G + +S A + + + + DI++ TP L++
Sbjct 201 TNELAVQIFQQLEIISKG---KGLNIAILSKQLAGKISNDVVKASKYDILVSTPLRLIDV 257
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K G + LS T ++ DE
Sbjct 258 VKLGKV-DLSKVTQLVIDEA 276
>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 20/130 (15%)
Query 620 EEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
E +PE ++F T+ D + N++ +G P L+ G Q
Sbjct 345 ETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAI--------HGDKQQG------E 390
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRAR 734
+ +L FK +G I++AT VA GID+ + VI + GN+ + I GR +
Sbjct 391 RDWVLKEFK-TGKSPIMVATDVAARGIDVKGISYVINLDMPGNIEDYVHRIGRTGRAGST 449
Query 735 GSKCFLLTSN 744
G+ T N
Sbjct 450 GTAVSFFTDN 459
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP + Q + A+ G++ + A TG GKT L H+ P G V+ A
Sbjct 127 KPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSIVHINAQPLLSPGDGPIVLVLAP 186
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + SK+ R T + G + + + +I I TP L++ L+ G
Sbjct 187 TRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETG 246
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 247 KT-NLRRVTYLVLDEA 261
>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 42/84 (50%), Gaps = 4/84 (5%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR-- 734
++ L AFK SG IL+AT+VA G+DI VILY+ +V + GR GRA
Sbjct 461 REAALYAFK-SGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNV 519
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ I + KE
Sbjct 520 GTSTAFFNRGNTNIGKDLIELLKE 543
>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DED1 PE=3 SV=1
Length=637
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 42/84 (50%), Gaps = 4/84 (5%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR-- 734
++ L AFK SG IL+AT+VA G+DI VILY+ +V + GR GRA
Sbjct 461 REAALYAFK-SGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNV 519
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ I + KE
Sbjct 520 GTSTAFFNRGNTNIGKDLIELLKE 543
>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592
GN=PRP28 PE=3 SV=2
Length=580
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (56%), Gaps = 4/68 (6%)
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-- 733
A++ +D+F+ G ILIAT VA GIDI +LV+ Y+ + I GR GRA
Sbjct 475 ARERAIDSFR-EGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIGRTGRAGN 533
Query 734 RGSKCFLL 741
+G+ C +
Sbjct 534 KGTSCTFI 541
>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 38/202 (19%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ K++ +E D +L +
Sbjct 398 ARDFLKDYVFLSVGRVG--STSENITQ----KVEYVED------------HDKRSVLLDI 439
Query 622 YHLNPET-ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H + T +T++FV+T+ + DAL ++ ++ P +T + ++
Sbjct 440 LHTHGTTGLTLIFVETKRMADALSEFL-----INQRFPATAIHGDRTQRE-------RER 487
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK-- 737
L+ F+ SG + IL+AT+VA G+DI VI Y+ ++ + GR GRA +
Sbjct 488 ALEMFR-SGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 546
Query 738 -CFLLTSNAGVIEKEQINMYKE 758
F N GV+ ++ I++ KE
Sbjct 547 TAFFNRGNRGVV-RDLIDLLKE 567
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3
SV=2
Length=1207
Score = 41.2 bits (95), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/141 (27%), Positives = 62/141 (44%), Gaps = 11/141 (8%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVF 295
KP Q++ ALPA M G++ I A TG GKT LL H+K P G G ++
Sbjct 599 KPTPIQMQ-ALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHIKDQPPLKDTDGPIGLIMT 657
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
++ V Q + + G R G + ++ +II+ TP +++ L
Sbjct 658 PTRELAV--QIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDLL 715
Query 356 --KKGTIPSLSIFTLMIFDEC 374
+G + +L T ++ DE
Sbjct 716 AANQGRVTNLKRVTYVVLDEA 736
Score = 37.4 bits (85), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 18/131 (14%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN--WIEGNPKLSFLKPGILTG 663
+E K + +L E Y + + T++FV+ + D L ++G P +S I G
Sbjct 806 DEPSKFHRVLELLGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMS-----IHGG 860
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + ++++ + FK G ILIATSVA G+D+ Q LVI Y+ ++
Sbjct 861 KDQIDRDS---------TISDFK-KGVVPILIATSVAARGLDVKQLKLVINYDAPNHLED 910
Query 724 MIQTRGR-GRA 733
+ GR GRA
Sbjct 911 YVHRAGRTGRA 921
>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 36/159 (23%), Positives = 64/159 (40%), Gaps = 4/159 (3%)
Query 219 CQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
+N E P +S+ +P Q + A+ G++ + A TG GKT L
Sbjct 120 VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 179
Query 279 EHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
H+ P G V+ A + Q ++ SK+ + R T + G + +
Sbjct 180 IVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIR 239
Query 336 QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ I TP L++ L+ G +L T ++ DE
Sbjct 240 DLSRGVEVCIATPGRLIDMLEAGRT-NLRRVTYLVLDEA 277
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (45%), Gaps = 21/121 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G Q + +L+ FK +
Sbjct 372 LIFTGTKRIADEITRFLRQDGWPALSI--------HGDKQQQ------ERDWVLNEFK-T 416
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK-CFLLTSN 744
G I++AT VA GID+ V+ Y+Y N I I GR A+G+ F T N
Sbjct 417 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 476
Query 745 A 745
+
Sbjct 477 S 477
>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/79 (37%), Positives = 36/79 (46%), Gaps = 4/79 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
LDAFK SG +L+AT VA G+DI LVI + V + + I GR A G
Sbjct 381 LDAFK-SGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAI 439
Query 739 FLLTSNAGVIEKEQINMYK 757
L T IN+ K
Sbjct 440 TLFTETDKAQSGALINVLK 458
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688
Score = 40.8 bits (94), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+L D+ F +V G +++TQ K++ +E V D +L +
Sbjct 409 AQDFLNDYVFLSVGRVG--STSENITQ----KVEYVEDV------------DKRSVLLDI 450
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L +++ I T+ + T ++
Sbjct 451 LHTHAGGLTLIFVETKRMADSLSDFL------------INQNFPATSIHGDRTQRERERA 498
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS---K 737
L+ F+ +G IL+AT+VA G+DI VI Y+ +V + GR GRA +
Sbjct 499 LELFR-NGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIAT 557
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N G++ +E +++ KE
Sbjct 558 AFFNRGNRGIV-RELLDLLKE 577
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5
PE=3 SV=1
Length=1194
Score = 41.2 bits (95), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/160 (27%), Positives = 67/160 (42%), Gaps = 13/160 (8%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK-KFP-QGQKGKVVFFAN 298
KP Q++ ALP M G++ I A TG GKT L H+K + P G G +
Sbjct 583 KPTPIQMQ-ALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGAIALI-- 639
Query 299 QIPVYEQQKSVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
P E ++S + + RV G A + ++ +II+ TP L++ L
Sbjct 640 MTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLL 699
Query 356 --KKGTIPSLSIFTLMIFDECHNTSKQ--HPYNMIMFNYL 391
G + +L T ++ DE P M +FN +
Sbjct 700 AANGGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNV 739
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (62%), Gaps = 1/42 (2%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
ILIATS+A G+D+ Q LVI Y+ ++ + GR GRA
Sbjct 864 ILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRA 905
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5
PE=3 SV=1
Length=1064
Score = 40.8 bits (94), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/160 (26%), Positives = 68/160 (43%), Gaps = 13/160 (8%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK-KFP-QGQKGKVVFFAN 298
KP + Q++ ALP M G++ I A TG GKT +L H+K + P G G +
Sbjct 451 KPTSIQMQ-ALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVTGDDGAIALI-- 507
Query 299 QIPVYEQQKSVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
P E ++S + + R G A + ++ +II+ TP +++ L
Sbjct 508 MTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLL 567
Query 356 --KKGTIPSLSIFTLMIFDECHNTSKQ--HPYNMIMFNYL 391
G + +L T ++ DE P M +FN +
Sbjct 568 AANSGRVTNLKRATYLVLDEADRMFDMGFEPQVMKIFNNV 607
Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/42 (43%), Positives = 26/42 (62%), Gaps = 1/42 (2%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
I+IATSVA G+D+ Q LV+ Y+ ++ + GR GRA
Sbjct 732 IMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRA 773
>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2
PE=3 SV=1
Length=545
Score = 40.4 bits (93), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/159 (23%), Positives = 64/159 (40%), Gaps = 4/159 (3%)
Query 219 CQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
+N E P +S+ +P Q + A+ G++ + A TG GKT L
Sbjct 118 VENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPA 177
Query 279 EHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
H+ P G V+ A + Q ++ SK+ + R T + G + +
Sbjct 178 IVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIR 237
Query 336 QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ I TP L++ L+ G +L T ++ DE
Sbjct 238 DLSRGVEVCIATPGRLIDMLEAGRT-NLRRVTYLVLDEA 275
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (45%), Gaps = 21/121 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G Q + +L+ FK +
Sbjct 370 LIFTGTKRIADEITRFLRQDGWPALSI--------HGDKQQQ------ERDWVLNEFK-T 414
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK-CFLLTSN 744
G I++AT VA GID+ V+ Y+Y N I I GR A+G+ F T N
Sbjct 415 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 474
Query 745 A 745
+
Sbjct 475 S 475
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550
Score = 40.4 bits (93), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 71/134 (53%), Gaps = 16/134 (12%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQ----GQKGKVVFFANQIPVYE 304
A+P +++G++ I CAPTG GKT L+ + + L+ P G +G ++ N++ V
Sbjct 144 AIPISLEGRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAVQI 203
Query 305 -QQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGTI 360
Q+ + +K G ++ GI N +I+ ++ DI++ TP L++++K TI
Sbjct 204 FQELNTMTK-----GKKMKIGILSKQLANKINNKIINSSKYDILVSTPLRLIDSIKNETI 258
Query 361 PSLSIFTLMIFDEC 374
SLS ++ DE
Sbjct 259 -SLSKVEQLVIDET 271
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (55%), Gaps = 4/66 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L+AF+ G +L+AT VA G+DI +LVI YE + + GR GRA GS
Sbjct 393 LNAFR-QGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAI 451
Query 739 FLLTSN 744
+ TS+
Sbjct 452 LMHTSS 457
>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2
PE=2 SV=2
Length=550
Score = 40.4 bits (93), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/81 (30%), Positives = 41/81 (51%), Gaps = 4/81 (5%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSK 737
+L+ F+ +G I++AT VA GID+ V Y++ GN + I GR A+G+
Sbjct 411 VLNEFR-TGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
Query 738 CFLLTSNAGVIEKEQINMYKE 758
TS+ +E +++ E
Sbjct 470 YTYFTSDNAKQARELVSILSE 490
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=ded1 PE=3 SV=1
Length=678
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/134 (28%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D+L +++ L+ P +T + ++ L+ F+ S
Sbjct 451 LTLIFVETKRMADSLSDFL-----LNQRFPATAIHGDRTQRE-------RERALEMFR-S 497
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
G IL+AT+VA G+DI VI Y+ ++ + GR GRA + F N
Sbjct 498 GRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 557
Query 745 AGVIEKEQINMYKE 758
GV+ ++ I++ KE
Sbjct 558 RGVV-RDLIDLLKE 570
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (39%), Gaps = 18/137 (13%)
Query 255 MKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQ---GQKGKVVFFANQ----------I 300
M G++ + CA TG GKT L I + P Q G + Q
Sbjct 222 MNGRDLMACAQTGSGKTGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILA 281
Query 301 PVYEQQKSVFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
P E +F K+ R R + G + QI D+++ TP LV+ +++
Sbjct 282 PTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIER 341
Query 358 GTIPSLSIFTLMIFDEC 374
G I SL +I DE
Sbjct 342 GRI-SLVNIKYLILDEA 357
>sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP7 PE=3 SV=1
Length=825
Score = 40.4 bits (93), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (6%)
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----G 731
P + LD+F S D +ILI T ++ G+D+ +LVI Y+ V + GR G
Sbjct 525 PVRTATLDSFSKSKDPSILITTDISSRGLDVPAVDLVIEYDPAFAVADHVHRIGRTARAG 584
Query 732 RARGSKCFL 740
R + FL
Sbjct 585 RPGKAVLFL 593
>sp|Q0UZ59|DBP9_PHANO ATP-dependent RNA helicase DBP9 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP9 PE=3 SV=1
Length=597
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/127 (26%), Positives = 58/127 (46%), Gaps = 9/127 (7%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
A+P A++G++ + + TG GKT LL H+ +KGK Q +
Sbjct 77 AIPLALQGRDILARSGTGTGKTGAYLLPILHNTLL----RKGKTSLILVPTKELALQITK 132
Query 310 FSKYFERH---GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+K H R+ I+G +E V ++ +N DI+I TP N+ G + +++
Sbjct 133 VAKALSAHCGQAVRIQNIAGKESEVVTKAKLADNPDIVIATPARASANINTGAL-AVTEL 191
Query 367 TLMIFDE 373
++ DE
Sbjct 192 AHLVVDE 198
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53,
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616
Score = 40.0 bits (92), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 40/77 (52%), Gaps = 7/77 (9%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNA 745
G NIL+AT VA G+D+ +L+I YE N + GR GRA +GS + + +
Sbjct 397 GHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQ 456
Query 746 G----VIEKEQINMYKE 758
+IE+E + + E
Sbjct 457 SRAVKIIEREVGSRFTE 473
>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1
PE=3 SV=1
Length=674
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/134 (28%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D+L +++ L+ P +T + ++ L+ F+ S
Sbjct 450 LTLIFVETKRMADSLSDFL-----LNQRFPATAIHGDRTQRE-------RERALEMFR-S 496
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
G IL+AT+VA G+DI VI Y+ ++ + GR GRA + F N
Sbjct 497 GRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 556
Query 745 AGVIEKEQINMYKE 758
GV+ ++ I++ KE
Sbjct 557 RGVV-RDLIDLLKE 569
>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508
Score = 40.0 bits (92), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query 678 QKCILDAFKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----G 731
QK L A K SG +L+AT VA G+DI +VI Y+ + I GR G
Sbjct 281 QKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFG 340
Query 732 RARGSKCFLLTSNAGVIE------KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
R+ + F+ + +I+ K+Q+ +YK +D + R EA KI+ I
Sbjct 341 RSGRAISFITPHDVSLIKGIEEIIKKQLELYKTD--DDEVFR--HLKEASTARKIVEIHL 396
Query 786 HE 787
E
Sbjct 397 DE 398
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612
GN=prp5 PE=3 SV=1
Length=1192
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/144 (30%), Positives = 70/144 (49%), Gaps = 22/144 (15%)
Query 606 NENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGIL 661
NE+ K L IL Y N + +++FV+ + DAL + +G P +S I
Sbjct 786 NEDTKFVRLLEILGNLYSDDANEDARSLIFVERQEAADALLRELMRKGYPCMS-----IH 840
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G+ + ++++ ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 841 GGKDQIDRDS---------TIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL 890
Query 722 IKMIQTRGR-GRA--RGSKCFLLT 742
+ GR GRA G+ LT
Sbjct 891 EDYVHRAGRTGRAGNTGTAVTFLT 914
>sp|O60072|SLH1_SCHPO RQC trigger complex helicase slh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=slh1
PE=1 SV=1
Length=1935
Score = 40.4 bits (93), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/92 (34%), Positives = 45/92 (49%), Gaps = 7/92 (8%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA-NQIPVYEQQKSVFSKYFERH 317
N + APTG GKT + L L +P K KVV+ A + V E+ K + E
Sbjct 1152 NIFVGAPTGSGKTMAAELATWRALHNYP---KSKVVYIAPMKALVKERVKDWGHRLVEPM 1208
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
G + ++G T +V + V N +III TP+
Sbjct 1209 GISMIELTGDTNPDV---KAVTNANIIITTPE 1237
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 27/175 (15%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK--------------GKVVFFANQIPVY 303
+N +ICAPTG GKT V+LL + + + K+V+ A
Sbjct 294 ENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIA------ 347
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQI----VENNDIIILTPQI--LVNNLKK 357
K++ ++ E+ G R+ + T E Q+ + I++ TP+ +V
Sbjct 348 -PMKALAAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSV 406
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
G L+I DE H + + Q+L +S + +++GL+A++
Sbjct 407 GDTQLAEKVRLVIIDEVHMLHDERGAVIESLVARTQRLVETSQQMIRIVGLSATL 461
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648
GN=prp5 PE=3 SV=1
Length=1151
Score = 40.4 bits (93), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (51%), Gaps = 18/130 (14%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFV-KTRALVDALKNWI-EGNPKLSFLKPGILTGR 664
E K L +L E Y+ + + T++FV + D LK+ + +G P +S I G+
Sbjct 784 EKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMS-----IHGGK 838
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ ++++ +D FKA G I+IATSVA G+D+ Q LV+ ++ ++
Sbjct 839 DQVDRDS---------TIDDFKA-GVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDY 888
Query 725 IQTRGR-GRA 733
+ GR GRA
Sbjct 889 VHRAGRTGRA 898
Score = 37.7 bits (86), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 67/160 (42%), Gaps = 13/160 (8%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK-KFP-QGQKGKVVFFAN 298
+P + Q++ A+PA M G++ I A TG GKT LL H++ + P +G G +
Sbjct 576 RPTSIQMQ-AIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKGSDGPIGLI-- 632
Query 299 QIPVYEQQKSVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
P E + + + + G R G + + +II+ TP ++ L
Sbjct 633 MTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCTPGRMIELL 692
Query 356 --KKGTIPSLSIFTLMIFDECHNTSKQ--HPYNMIMFNYL 391
G + +L T ++ DE P M +FN +
Sbjct 693 AANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNI 732
>sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria
phage T4 OX=10665 GN=uvsW PE=1 SV=2
Length=587
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 79/191 (41%), Gaps = 21/191 (11%)
Query 232 VSDTNLYSPFK---PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
+S +YS K P YQ + + + I+ PT GK+ + L+ ++L+ +
Sbjct 100 LSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGKSLIQALLARYYLENY--- 156
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
+GK++ + Q F Y + I G +++ ++ + +++ T
Sbjct 157 -EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKD---DKYKNDAPVVVGTW 212
Query 349 QILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI------MFNY-LDQKLGGSSGP 401
Q +V K+ S F +M+ DECH + + ++I MF + L L
Sbjct 213 QTVVKQPKEW----FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGKAN 268
Query 402 LPQVIGLTASV 412
+ Q +G+ +
Sbjct 269 IMQYVGMFGEI 279
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1
PE=3 SV=1
Length=675
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/134 (28%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D+L +++ L+ P +T + ++ L+ F+ S
Sbjct 450 LTLIFVETKRMADSLSDFL-----LNQRFPATAIHGDRTQRE-------RERALEMFR-S 496
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
G IL+AT+VA G+DI VI Y+ ++ + GR GRA + F N
Sbjct 497 GRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGN 556
Query 745 AGVIEKEQINMYKE 758
GV+ ++ I++ KE
Sbjct 557 RGVV-RDLIDLLKE 569
>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 13/102 (13%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSKCFLLTSNAGVI 748
+LIAT VA G+DI LV+ Y+ GN I GR GR S CF+ + +
Sbjct 309 VLIATDVASRGLDIPIVELVVNYDIPGNPDTFIHRAGRTARAGRHGESLCFVTEKDIQRV 368
Query 749 E--KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
E +E+IN E+ + D AV R+ + + ++
Sbjct 369 EAIEERINKKMEEFTD-------VGDTAVIRKSLTKVTAAKR 403
>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3
SV=1
Length=434
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/185 (28%), Positives = 88/185 (48%), Gaps = 29/185 (16%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRDPSNE--NPKLED-- 613
RM DA L FS + E+ D E+ +++ LE S++ E P +ED
Sbjct 185 RMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKM 244
Query 614 --LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L +++E++ P+ I+F T+ + L +++EG+ + G+LTG
Sbjct 245 RLLLSLIEEDW---PDK-AIVFSNTKHSCEKLWSYLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCI--LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+P +K I L+ F SG+ ++L+AT VA G+ I+ + V Y+ + + G
Sbjct 289 --DVPQKKRIRILEQF-TSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIG 345
Query 730 R-GRA 733
R GRA
Sbjct 346 RTGRA 350
>sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=recG
PE=3 SV=1
Length=693
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (55%), Gaps = 16/102 (16%)
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK-CILDAFKASGDHNILIATSVADEG 703
W E L L G++ GR K PA+K ++ +FK G+ ++L+AT+V + G
Sbjct 507 TWEELKLALPELNVGLVHGRMK---------PAEKQAVMTSFK-QGELHLLVATTVIEVG 556
Query 704 IDIAQCNLVILY--EYVGNVIKMIQTRGR-GR-ARGSKCFLL 741
+D+ +L+I+ E +G + ++ Q RGR GR A S C LL
Sbjct 557 VDVPNASLMIIENPERLG-LAQLHQLRGRVGRGAVASHCVLL 597
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DED1 PE=3 SV=1
Length=650
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (28%), Positives = 55/108 (51%), Gaps = 14/108 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ +T++FV+T+ + D L +++ I+ T + T ++ L AFK
Sbjct 417 DGLTLIFVETKRMADELTDFL------------IMQDFRATAIHGDRTQSERERALAAFK 464
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+G+ N+L+AT+VA G+DI V+ Y+ ++ + GR GRA
Sbjct 465 -NGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRTGRA 511
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (51%), Gaps = 18/130 (14%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFV-KTRALVDALKNWI-EGNPKLSFLKPGILTGR 664
E K L +L E Y+ + + T++FV + D LK+ + +G P +S I G+
Sbjct 713 EKEKFHRLLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRKGYPCMS-----IHGGK 767
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ ++++ +D FKA G I+IATSVA G+D+ Q LV+ ++ ++
Sbjct 768 DQVDRDS---------TIDDFKA-GVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDY 817
Query 725 IQTRGR-GRA 733
+ GR GRA
Sbjct 818 VHRAGRTGRA 827
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/163 (25%), Positives = 66/163 (40%), Gaps = 19/163 (12%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK-----KFPQGQKGKVVF 295
KP + Q++ A+PA M G++ I A TG GKT LL H++ K G G ++
Sbjct 505 KPTSIQMQ-AIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKNSDGPIGLIM- 562
Query 296 FANQIPVYEQQKSVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
P E + + + + G R G + + +II+ TP ++
Sbjct 563 ----TPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCTPGRMI 618
Query 353 NNL--KKGTIPSLSIFTLMIFDECHNTSKQ--HPYNMIMFNYL 391
L G + +L T ++ DE P M +FN +
Sbjct 619 ELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNI 661
>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3
PE=3 SV=1
Length=493
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (46%), Gaps = 4/79 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
LDAFK +G +L+AT VA G+DI LVI + V + + I GR A G
Sbjct 371 LDAFK-TGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 429
Query 739 FLLTSNAGVIEKEQINMYK 757
L T IN+ K
Sbjct 430 TLFTETDKAQSGALINVLK 448
>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DED1 PE=3 SV=2
Length=671
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/202 (27%), Positives = 92/202 (46%), Gaps = 37/202 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQR E + +S L DL
Sbjct 401 ARDFLKDYIFLSVGRVG--STSENITQRVMEVKHRDDKISH--------LLDLL------ 444
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
+ +T++FV+T+ D L ++++ N L T+ + T ++
Sbjct 445 -STHGGGLTLIFVETKRNADELSDFLQ-NQNLP-----------ATSIHGDRTQRERERA 491
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKC-- 738
L+ F+ +G IL+AT+VA G+DI VI Y+ ++ + GR GRA +
Sbjct 492 LEMFR-TGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 550
Query 739 --FLLTSNAGVIEKEQINMYKE 758
F + N+GV + E +N+ KE
Sbjct 551 AFFDMKDNSGVAQ-ELLNILKE 571
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/127 (26%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ +T++FV+T+ + D L +++ I+ T + T ++ L AF+
Sbjct 399 DGLTLIFVETKRMADQLTDFL------------IMQNFRATAIHGDRTQSERERALAAFR 446
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS---KCFLLT 742
SG +L+AT+VA G+DI VI Y+ +V + GR GRA + F +
Sbjct 447 -SGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query 743 SNAGVIE 749
N+ +++
Sbjct 506 ENSNIVK 512
>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804
GN=deaD PE=3 SV=1
Length=601
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (49%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQK-SVFSKY 313
++G++ + A TG GKT L H+L + + V+ ++ V + S FSKY
Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY 100
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G V + G V + + + I++ TP L+++LK+GT+ +LS ++ DE
Sbjct 101 I--MGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTL-NLSNLYALVLDE 157
Query 374 C 374
Sbjct 158 A 158
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (44%), Gaps = 15/119 (13%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ TI+FVKT+ + +E N G N M ++ L+ K
Sbjct 245 SATIIFVKTKNATLEVSEALERN------------GYNSAALNGDMNQALREQTLERLK- 291
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
SG +ILIAT VA G+D+ + + VI Y+ + + GR GRA R + L N
Sbjct 292 SGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 350
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1
PE=1 SV=2
Length=604
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/127 (26%), Positives = 61/127 (48%), Gaps = 17/127 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ +T++FV+T+ + D L +++ I+ T + T ++ L AF+
Sbjct 399 DGLTLIFVETKRMADQLTDFL------------IMQNFRATAIHGDRTQSERERALAAFR 446
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS---KCFLLT 742
SG +L+AT+VA G+DI VI Y+ +V + GR GRA + F +
Sbjct 447 -SGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNS 505
Query 743 SNAGVIE 749
N+ +++
Sbjct 506 ENSNIVK 512
>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia
coli O157:H7 OX=83334 GN=recG PE=3 SV=1
Length=693
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (55%), Gaps = 16/102 (16%)
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK-CILDAFKASGDHNILIATSVADEG 703
W E L L G++ GR K PA+K ++ +FK G+ ++L+AT+V + G
Sbjct 507 TWEELKLALPELNVGLVHGRMK---------PAEKQAVMASFK-QGELHLLVATTVIEVG 556
Query 704 IDIAQCNLVILY--EYVGNVIKMIQTRGR-GR-ARGSKCFLL 741
+D+ +L+I+ E +G + ++ Q RGR GR A S C LL
Sbjct 557 VDVPNASLMIIENPERLG-LAQLHQLRGRVGRGAVASHCVLL 597
>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/131 (30%), Positives = 59/131 (45%), Gaps = 16/131 (12%)
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F +TR VD L+ ++ + F GI G +Q P + +L FK +G
Sbjct 633 IVFAETRKGVDDLQRVLQFS---GFKSIGI---HGNKSQ------PERDFVLSQFK-NGM 679
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGV 747
I+IAT VA G+DI V+ Y++ + I I R A G LLT++
Sbjct 680 VPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNAR 739
Query 748 IEKEQINMYKE 758
+ E I + E
Sbjct 740 LANELIKVLTE 750
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/126 (27%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKVVFFANQIPVYE---QQKS 308
A+KG++ I A TG GKT LL H+ P + G +V P E Q +
Sbjct 418 ALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVL--APTRELALQIQE 475
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
+K+ T + G +++ V + + +I+I TP L++ L+ G +L T
Sbjct 476 ETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKT-NLRRVTY 534
Query 369 MIFDEC 374
++ DE
Sbjct 535 LVLDEA 540
>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia
coli (strain K12) OX=83333 GN=recG PE=1 SV=1
Length=693
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 56/102 (55%), Gaps = 16/102 (16%)
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK-CILDAFKASGDHNILIATSVADEG 703
W E L L G++ GR K PA+K ++ +FK G+ ++L+AT+V + G
Sbjct 507 TWEELKLALPELNVGLVHGRMK---------PAEKQAVMASFK-QGELHLLVATTVIEVG 556
Query 704 IDIAQCNLVILY--EYVGNVIKMIQTRGR-GR-ARGSKCFLL 741
+D+ +L+I+ E +G + ++ Q RGR GR A S C LL
Sbjct 557 VDVPNASLMIIENPERLG-LAQLHQLRGRVGRGAVASHCVLL 597
>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + A+ G++ + A TG GKT L H+ P ++G P
Sbjct 138 KPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAP 197
Query 302 VYE---QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
E Q ++ SK+ R T + G + + + +I I TP L++ L+ G
Sbjct 198 TRELACQIQTECSKFGASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAG 257
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 258 KT-NLKRVTYLVLDEA 272
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (61%), Gaps = 1/41 (2%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
+L F+ G H+I++AT VA GID+ V+ Y+ GN+
Sbjct 405 VLKEFR-QGSHSIMVATDVAARGIDVKGITHVVNYDMPGNI 444
>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query 252 LPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+PA + G++ I A TG GKTF L L + P V+ P +E +
Sbjct 38 IPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVL-----TPTHELAYQIS 92
Query 311 SKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
++ + G RV +SG T + V +++++ I++ P L ++L S
Sbjct 93 EQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNLK 152
Query 368 LMIFDEC 374
++ DE
Sbjct 153 YLVVDEA 159
>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5
PE=3 SV=1
Length=1197
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/66 (41%), Positives = 36/66 (55%), Gaps = 4/66 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGS 736
+D FKA G +LIATSVA G+D+ Q LVI Y+ ++ + GR GRA G+
Sbjct 852 STIDDFKA-GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGT 910
Query 737 KCFLLT 742
LT
Sbjct 911 AVTFLT 916
>sp|Q09475|YP93_CAEEL Uncharacterized helicase C28H8.3 OS=Caenorhabditis
elegans OX=6239 GN=C28H8.3 PE=3 SV=2
Length=1714
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (42%), Gaps = 11/143 (8%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
S F P +Q ++ +G + +I APT GKTFVS E L+ VV+ A
Sbjct 781 SGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLR---SSDNDVVVYVAP 837
Query 299 QIPVYEQQ-KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q SV++++ + R + G + Q ++I P+ L L
Sbjct 838 SKALINQVCGSVYARFRNKSMKRGISLFGTLTQE--YSQNAMQCQVLITVPECL-QELML 894
Query 358 GTIPSLSIFT----LMIFDECHN 376
P++ F ++FDE H+
Sbjct 895 SRTPAVQKFVSHIKYVVFDEVHS 917
>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3
SV=1
Length=738
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/115 (29%), Positives = 57/115 (50%), Gaps = 7/115 (6%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++G + ++ L A + G+ ++L+AT +A GID+ +LVI ++ + K + G
Sbjct 615 HSGKSQEQREAALQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIG 673
Query 730 R-GRARGSK---CFLLTSNAGVIEKEQINMYKEKM--MNDSILRLQTWDEAVFRE 778
R GRA + FL + V+ +I + K KM MN + R + V RE
Sbjct 674 RTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTRE 728
>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/115 (29%), Positives = 57/115 (50%), Gaps = 7/115 (6%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++G + ++ L A + G+ ++L+AT +A GID+ +LVI ++ + K + G
Sbjct 615 HSGKSQEQREAALQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIG 673
Query 730 R-GRARGSK---CFLLTSNAGVIEKEQINMYKEKM--MNDSILRLQTWDEAVFRE 778
R GRA + FL + V+ +I + K KM MN + R + V RE
Sbjct 674 RTGRAGKTGVAITFLTNDDDEVMYDLRIEVEKSKMSKMNPELARHEAARTRVTRE 728
>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=RRP3 PE=3 SV=1
Length=506
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/169 (29%), Positives = 72/169 (43%), Gaps = 27/169 (16%)
Query 631 ILFVKTRA---LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
I+F +T+A + L N +E L G NQ TG LD FKA
Sbjct 330 IVFTRTKANAERITTLANLLE-------FSATALHGDLNQNQRTGS--------LDLFKA 374
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNA 745
G +IL+AT VA G+DI ++VI Y+ + I GR RA R K L S
Sbjct 375 -GRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQY 433
Query 746 G---VIEKEQI---NMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
++ E + + KE + D+IL L+ + E ++ + K
Sbjct 434 DLELILRIEDVLGKKLPKENVNKDAILTLRDSVDKANGEVVMELNRRNK 482
>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/94 (28%), Positives = 44/94 (47%), Gaps = 1/94 (1%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++GMT + FK G IL+AT + GIDI + N+VI Y+ + + G
Sbjct 324 HSGMTQEERLTRYKNFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVG 382
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
R G+K +T + + + +N +E+ D
Sbjct 383 RAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 416
>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/131 (27%), Positives = 54/131 (41%), Gaps = 5/131 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
P ++ ++ I APTG GKT +L + P V+ Q V Q F +
Sbjct 152 PPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVA-QIVDEFKR 210
Query 313 YFERHGY-RVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIP--SLSIFTL 368
+ + G +V +SGA Q+ + ++I+ TP LV +L P LS
Sbjct 211 WNDESGVAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRF 270
Query 369 MIFDECHNTSK 379
+I DE K
Sbjct 271 LIVDEADRMGK 281
>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/94 (28%), Positives = 44/94 (47%), Gaps = 1/94 (1%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++GMT + FK G IL+AT + GIDI + N+VI Y+ + + G
Sbjct 324 HSGMTQEERLTRYKNFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVG 382
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
R G+K +T + + + +N +E+ D
Sbjct 383 RAGRFGTKGLAITFVSSASDSDVLNQVQERFEVD 416
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (52%), Gaps = 7/77 (9%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFL----L 741
G+ +IL+AT VA G+D+ +LVI YE N + GR GRA +GS +
Sbjct 409 GNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQ 468
Query 742 TSNAGVIEKEQINMYKE 758
T +IEKE + + E
Sbjct 469 TRAVKMIEKEVGSRFNE 485
>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/201 (26%), Positives = 91/201 (45%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ K++ +E D +L +
Sbjct 395 ARDFLKDYVFLSVGRVG--STSENITQ----KVEYVEDA------------DKRSVLLDI 436
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L ++ +F I R T ++
Sbjct 437 LHTHGTGLTLIFVETKRMADSLSEFLINQ---NFPATAIHGDR---------TQRERERA 484
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG---SK 737
L+ F+ +G IL+AT+VA G+DI V+ Y+ ++ + GR GRA S
Sbjct 485 LEYFR-NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLST 543
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N GV+ ++ I + KE
Sbjct 544 AFFNRGNRGVV-RDLIELLKE 563
>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (5%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RG 735
++ +L F+ G +LIAT+VA G+DI + +LV+LY + GR GRA R
Sbjct 512 REVVLKGFR-QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRT 570
Query 736 SKCFLL 741
C L
Sbjct 571 GVCISL 576
>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+ I+FV T++ DA+ ++ + SF +T G Q+ ++ L +F+
Sbjct 533 LVIVFVNTKSNCDAVAKDLKSS---SF---SAVTLHGNKTQD------QREAALQSFR-D 579
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
G N+L+AT VA G+DI +LVI + G + GR GRA
Sbjct 580 GRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRA 625
>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp2 PE=3 SV=1
Length=565
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 20/119 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G Q + +L+ FK +
Sbjct 388 LIFTGTKRIADEITRFLRQDGWPALSI--------HGDKQQQE------RDWVLNEFK-T 432
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSN 744
G I++AT VA GID+ V+ Y+Y N + I GR A+G+ T++
Sbjct 433 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTD 491
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (43%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q ++
Sbjct 171 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 230
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
SK+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 231 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRT-NLRRVTYLV 289
Query 371 FDEC 374
DE
Sbjct 290 LDEA 293
>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2
PE=3 SV=1
Length=554
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (45%), Gaps = 20/119 (17%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F T+ + D + ++ +G P LS G Q + +L+ FK +
Sbjct 381 LIFTGTKRIADEITRFLRQDGWPALSI--------HGDKQQQ------ERDWVLNEFK-T 425
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSN 744
G I++AT VA GID+ V+ Y+Y N + I GR A+G+ T++
Sbjct 426 GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTD 484
>sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis
thaliana OX=3702 GN=RH51 PE=2 SV=1
Length=568
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKK---FPQGQKGKVVFFANQIPVYE---QQ 306
P ++GK+ + A TG GKT L+ L K P+ G +V P E Q
Sbjct 122 PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVI----CPTRELAIQT 177
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
K+V + + H V+ + G ++I ++++I TP L+++L+
Sbjct 178 KNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQ 227
>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (5%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RG 735
++ +L F+ G +LIAT+VA G+DI + +LV+LY + GR GRA R
Sbjct 470 REVVLKGFR-QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAGRT 528
Query 736 SKCFLL 741
C L
Sbjct 529 GVCISL 534
>sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP2 PE=3 SV=1
Length=441
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + A+ G++ I A TG GKT L H+ P G V+ A
Sbjct 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAP 194
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + SK+ R + + G + ++ +I+I TP L++ L+ G
Sbjct 195 TRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAEIVIATPGRLIDMLEIG 254
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 255 KT-NLKRVTYLVLDEA 269
>sp|P53327|SLH1_YEAST RQC trigger complex helicase SLH1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=SLH1 PE=1 SV=2
Length=1967
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/178 (26%), Positives = 78/178 (44%), Gaps = 32/178 (18%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N + +PTG GKT V+ L H K FP K+V+ A + ++ + K
Sbjct 1156 ENAFVGSPTGSGKTIVAELAIWHAFKTFP---GKKIVYIAPMKALVRERVDDWRK----- 1207
Query 318 GYRVTGISG-----ATAENVPVEQIVENNDIIILTPQ----ILVNNLKKGTIPSLSIFTL 368
++T ++G T +++P + V + I+I TP+ I N + + +S L
Sbjct 1208 --KITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVS---L 1262
Query 369 MIFDECH-NTSKQHP-YNMIM--FNYLDQ------KLGGSSGPLPQVIGLTASVGVGD 416
+I DE H S + P MI+ NY+ +L G S + + +GV D
Sbjct 1263 IIMDEIHLLASDRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKD 1320
Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 27/192 (14%)
Query 240 PFKPRNYQLELALPAM--KGKNTIICAPTGCGKTFVSLLICEHHLKKFP----------Q 287
P++ N L P +N +ICAPTG GKT ++LL + +K+F Q
Sbjct 284 PYETLNQIQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQ 343
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG---ATAENVPVEQIVENNDII 344
KV++ A + + FSK +V ++G T + Q +I
Sbjct 344 YDDFKVIYVAPLKALAAEIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQ------VI 397
Query 345 ILTPQI--LVNNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSG 400
+ TP+ +V G +S L+I DE H + + ++ L Q SS
Sbjct 398 VTTPEKWDVVTRKANGDNDLVSKVKLLIIDEVHLLHEDRGSVIETLVARTLRQV--ESSQ 455
Query 401 PLPQVIGLTASV 412
+ ++IGL+A++
Sbjct 456 SMIRIIGLSATL 467
>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3
SV=1
Length=487
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (33%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
LDAFK SG +L+AT VA G+DI LV+ + V + + I GR + G
Sbjct 365 LDAFK-SGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTVEDYVHRIGRTGRAGSDGLAI 423
Query 739 FLLTSNAGVIEKEQINMYK 757
+ T N + +N+ K
Sbjct 424 TMFTENDKALSGGLVNILK 442
>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
OX=169963 GN=dbpA PE=2 SV=1
Length=470
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 44/226 (19%)
Query 570 FFSNVRAAGFDEIEQDLTQRFE----------EKLQELESVSRDPSNENPKLEDLCFILQ 619
FFS A E QDL +R++ EK + V N+ L+D+
Sbjct 177 FFS----ATMPEEMQDLIKRYQDNPMVIEMASEKTNPIFHVEMQTDNKEKTLKDVLITE- 231
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
NP++ I+F T+ VD L + ++ +K + G G+ +
Sbjct 232 -----NPDS-AIIFCNTKNQVDELTDLLD-------VKASKIHG--------GLRQEDRF 270
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGS 736
+D FK SG LIAT VA GID+ +LVI Y+ N + I GR G
Sbjct 271 RAMDDFK-SGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGK 329
Query 737 KCFLLTSNAGVIEK---EQINMYKEKMMNDSILRLQTWDEAVFREK 779
+ +N + + E +++ EK +++ ++ ++A FR+K
Sbjct 330 AISFVKTNENPLLRDIEEMLDVTIEKKRKPTVIEVKVNEDA-FRKK 374
>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB
PE=3 SV=1
Length=543
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 10/133 (8%)
Query 250 LALP-AMKGKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIP 301
L LP A+ G++ A TG GKT L++ + L + P+ + ++ ++
Sbjct 38 LTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELA 97
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +V K+ G R I G + E + + D++I TP L++ LK+ +
Sbjct 98 IQIYNDAV--KFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATPGRLIDYLKQHEVV 155
Query 362 SLSIFTLMIFDEC 374
SL + + + DE
Sbjct 156 SLRVCEICVLDEA 168
>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3
SV=3
Length=554
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (44%), Gaps = 20/121 (17%)
Query 627 ETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
E ++F T+ D + +++ +G P L+ G QN + +L
Sbjct 372 EAKVLIFSSTKRACDEITSYLRADGWPALAI--------HGDKQQN------ERDWVLRE 417
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLL 741
FK +G I++AT VA GID+ + VI Y+ GN+ + I GR G+ L
Sbjct 418 FK-TGKSPIMVATDVAARGIDVKGISYVINYDMPGNIEDYVHRIGRTGRAGTTGTAVSLF 476
Query 742 T 742
T
Sbjct 477 T 477
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + A+ G++ I A TG GKT L H+ P G V+ A
Sbjct 147 KPTAIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAP 206
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + SK+ R T I G + + + +I I TP L++ L+ G
Sbjct 207 TRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDMLETG 266
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 267 KT-NLRRVTYLVLDEA 281
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (44%), Gaps = 23/133 (17%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
T++FV RA+ D L + LS + +T G Q + L F+ +G
Sbjct 609 TMVFVSQRAMADTLASI------LSSAQVPAITIHGAREQRE------RSEALRQFR-NG 655
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-------GRAR---GSKCF 739
+LIAT+VA+ G+DI + VI Y+ N+ I GR GRA C
Sbjct 656 SKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNSGRATSFISEDCS 715
Query 740 LLTSNAGVIEKEQ 752
LL+ GV+ Q
Sbjct 716 LLSELVGVLADAQ 728
>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915
GN=deaD PE=3 SV=1
Length=602
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 13/154 (8%)
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK- 283
NSC + ++D +P Q +KGK+ + A TG GKT L H++K
Sbjct 14 NSCIITALNDIGY---VQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKL 70
Query 284 --KFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVEN 340
+ PQ ++ + Q FS + ++ G V + G ++ ++ + +
Sbjct 71 DVRVPQ-----ILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKG 125
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
II+ TP L+++LK+ T+ SLS ++ DE
Sbjct 126 PQIIVGTPGRLLDHLKRRTL-SLSNLHSLVLDEA 158
>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/201 (25%), Positives = 93/201 (46%), Gaps = 37/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ+ E +++++ S +L +
Sbjct 398 ARDFLKDYVFLSVGRVG--STSENITQKVE-YVEDIDKRS---------------VLLDI 439
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
H + +T++FV+T+ + D+L +++ I T+ + T ++
Sbjct 440 LHTHGAGLTLIFVETKRMADSLSDFL------------INQNFPATSIHGDRTQRERERA 487
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG---SK 737
L+ F+ +G IL+AT+VA G+DI V+ Y+ ++ + GR GRA S
Sbjct 488 LEMFR-NGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGIST 546
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N GV ++ I + KE
Sbjct 547 AFFNRGNRGVC-RDLIELLKE 566
>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) OX=257363
GN=mfd PE=3 SV=1
Length=1120
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/109 (27%), Positives = 54/109 (50%), Gaps = 19/109 (17%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILY--EYVGNVIKMIQTR---GRGRARGSKCFLLT 742
+G +ILI+T++ + GIDI + N +I++ + +G + ++ Q R GRG+ RG +
Sbjct 839 AGKFDILISTTIIESGIDITEANTMIIHNADTLG-LSQLYQLRGRIGRGKIRGYAYLTVA 897
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
SN +K+M S+ RL+ + I +H+ +R
Sbjct 898 SN-------------KKLMQHSLRRLEIIQNSCALGSGFTIASHDADLR 933
>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/201 (27%), Positives = 92/201 (46%), Gaps = 36/201 (18%)
Query 563 ALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A D+LKD+ F +V G +++TQ K++ +E V K L IL
Sbjct 403 ARDFLKDYVFLSVGRVG--STSENITQ----KVEYVEDVD--------KRSVLLDILHTH 448
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
+T++FV+T+ + DAL +++ ++ P +T + ++
Sbjct 449 ---GTSGLTLIFVETKRMADALSDFL-----INQRFPATAIHGDRTQRE-------RERA 493
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK--- 737
L+ F+ S IL+AT+VA G+DI VI Y+ ++ + GR GRA +
Sbjct 494 LEMFR-SARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIAT 552
Query 738 CFLLTSNAGVIEKEQINMYKE 758
F N GV+ +E I++ KE
Sbjct 553 AFFNRGNRGVV-RELIDLLKE 572
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/189 (26%), Positives = 75/189 (40%), Gaps = 29/189 (15%)
Query 209 IQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL-----ELALP-AMKGKNTII 262
++ Q+ PE N N PP D +L S K YQ + ++P M G++ +
Sbjct 177 VEASGQDVPEPVNAFTN--PPL---DDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMA 231
Query 263 CAPTGCGKTFVSLL-ICEHHLKKFPQ---GQKGKVVFFANQ----------IPVYEQQKS 308
CA TG GKT L I +K P Q + + Q P E
Sbjct 232 CAQTGSGKTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQ 291
Query 309 VFS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+F K+ R R + G + QI D+++ TP LV+ +++G I SL
Sbjct 292 IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI-SLVN 350
Query 366 FTLMIFDEC 374
++ DE
Sbjct 351 INYLVLDEA 359
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Length=2136
Score = 39.3 bits (90), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+L+ + K K+++ A + ++ F
Sbjct 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 556
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K +G V ++G ++ ++ + II+ TP+ + K G + L+I
Sbjct 557 KRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLII 613
Query 371 FDECH 375
DE H
Sbjct 614 LDEIH 618
Score = 38.5 bits (88), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query 259 NTIICAPTGCGKTFVSLLICEHH--LKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFE 315
N + APTG GKT IC L+ Q +G+ V+ + EQ + K+ +
Sbjct 1345 NVFVGAPTGSGKT-----ICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 1399
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLK-KGTIPSLSIFTLMIF 371
R +V ++G T+ ++ +++ +III TP+ IL K + + ++++F +
Sbjct 1400 RLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF---VV 1453
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
DE H +GG +GP+ +VI
Sbjct 1454 DEVH------------------LIGGENGPVLEVI 1470
>sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP5 PE=3 SV=2
Length=477
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 15/109 (14%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSFLKPGILTGRGKT 667
P L++ +L + Y L +++FVKTR D ++ +E + K+S L G G+ +
Sbjct 291 PSLKEKYEVLCKLYGLMTIGSSVIFVKTRESADEIQRRMEADGHKVSALH-GAFQGQERD 349
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+LD F+ SG +LI T+V GID++ ++VI Y+
Sbjct 350 Q------------LLDDFR-SGKSKVLITTNVLARGIDVSSVSMVINYD 385
>sp|Q7RX59|ATM1_NEUCR Iron-sulfur clusters transporter atm1, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=fes-4
PE=3 SV=1
Length=716
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/97 (30%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL-YSPFKPRNYQLELALPAMKG 257
D+E + + +E P + L+ E D Y P P L L +PA G
Sbjct 418 DMETLFNLQKVNVTIKEQPNAKPLTLTRGGEIEFKDVTFGYHPESPILRDLSLTIPA--G 475
Query 258 KNTIICAPTGCGK-TFVSLLICEHHLKKFPQGQKGKV 293
K I P+GCGK T + LL +F QKG +
Sbjct 476 KKVAIVGPSGCGKSTLLRLLF------RFYDPQKGAI 506
>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis
thaliana OX=3702 GN=RH41 PE=2 SV=1
Length=505
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 65/164 (40%), Gaps = 32/164 (20%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
IL+ + H P + ++V +R D L N I ++TG + + +
Sbjct 349 ILRSQNHFKPPAV--VYVSSRVGADLLANAIT-----------VVTGVKALSIHGEKPMK 395
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
++ ++ +F G+ +L++T V G+D+ VI+++ + + I GR G
Sbjct 396 ERRDVMGSF-LGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGE 454
Query 737 K------------------CFLLTSNAGVIEKEQINMYKEKMMN 762
K L S+ I KE IN+ +M N
Sbjct 455 KGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSREMHN 498
>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia
prowazekii (strain Madrid E) OX=272947 GN=mfd PE=3
SV=2
Length=1120
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (61%), Gaps = 6/64 (9%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILY--EYVGNVIKMIQTR---GRGRARGSKCFLLTS 743
G +ILI+T++ + GIDIA+ N +I++ + +G + ++ Q R GRG+ RG + S
Sbjct 840 GKFDILISTTIIESGIDIAEANTMIIHKADTLG-LSQLYQLRGRIGRGKIRGYAYLTVAS 898
Query 744 NAGV 747
N +
Sbjct 899 NKKI 902
>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (46%), Gaps = 4/79 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+AFK SG +L+AT VA G+DI LV+ + V + + I GR A G
Sbjct 366 LEAFK-SGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAI 424
Query 739 FLLTSNAGVIEKEQINMYK 757
L T IN+ K
Sbjct 425 TLFTETDKAQSGALINVLK 443
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 70/310 (23%), Positives = 118/310 (38%), Gaps = 73/310 (24%)
Query 501 NREFGTQKYEQWI-----VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
RE Q Y+Q + V V AC+ P KD + R + N +++I+
Sbjct 181 TRELAVQIYDQLLRFSSAVDVGIACIYGGSP-KDHQRREIR------------NASVVIA 227
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
R+KD S V+ DE ++ L + FE+ +Q++ V PS + K + +
Sbjct 228 TPGRLKDFQADQTINLSGVKYLVLDEADRMLDKGFEQDIQDI--VKGIPSTQ--KRQTIM 283
Query 616 FI---------LQEEYHLNPETITI-------LFVKTRALVDALKNWIEGNPKLSFLKPG 659
F L + NP T+TI + + +V+ L+ + + + L L+
Sbjct 284 FTATWPIGVRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRR- 342
Query 660 ILTGRGKTNQ-----------------------------NTGMTLPAQKCILDAFKASGD 690
GK N + M+ + L+AFK SG
Sbjct 343 -YQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFK-SGS 400
Query 691 HNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGV 747
++L+AT VA G+DI LV+ + + + + I GR A G L T
Sbjct 401 ISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERDKA 460
Query 748 IEKEQINMYK 757
+ IN+ +
Sbjct 461 LSGPLINVLR 470
>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (42%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 131 ALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQEC 190
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
SK+ R T + G + + + +I+I TP L++ L+ G +L T ++
Sbjct 191 SKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKT-NLKRVTYLV 249
Query 371 FDEC 374
DE
Sbjct 250 LDEA 253
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/97 (27%), Positives = 46/97 (47%), Gaps = 17/97 (18%)
Query 627 ETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
E+ ++F T+ D + +++ +G P L+ G Q+ + +L
Sbjct 344 ESKVLIFASTKKTCDEVTSYLRADGWPALAI--------HGDKQQS------ERDWVLRE 389
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
FK +G I++AT VA GID+ N VI ++ GN+
Sbjct 390 FK-TGKSPIMVATDVAARGIDVKGINFVINFDMPGNI 425
>sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308
PE=3 SV=1
Length=729
Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 39/262 (15%)
Query 229 PSEVS----DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
P EV ++ + + P+ +E L ++G+N + PT GKT ++ L LK
Sbjct 9 PDEVKQFYLNSGIMELYPPQAEAVEKGL--LEGRNLLAAIPTASGKTLLAELAM---LKS 63
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENND 342
G GK ++ +P+ F ++ F G RV GIS T + ++ + ND
Sbjct 64 ILAG--GKALYI---VPLRALASEKFRRFREFSELGIRV-GIS--TGDYDLRDEGLGVND 115
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSG 400
II+ T + + L+ T+ I ++++ DE H ++ + P + L +
Sbjct 116 IIVATSEKTDSLLRNETVWMQEI-SVVVADEVHLIDSPDRGPTLEVTLAKLRKM-----N 169
Query 401 PLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 460
P Q++ L+A+VG N DE L L+A ++ + E LE V + +
Sbjct 170 PSCQILALSATVG-----NADE-------LAVWLEAELVVSEWRPTELLEGVFFNGTFYC 217
Query 461 RKVESRISDKFKYIIAQLMRDT 482
+ E + K L DT
Sbjct 218 KDREKTVEQSTKDEAVNLALDT 239
>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3
PE=3 SV=1
Length=564
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (6%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRAR 734
+ L AFK SG N+L+AT VA G+DI +VI + + + + I GR A+
Sbjct 439 RTAALSAFK-SGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAK 497
Query 735 GSKCFLLT 742
G+ L T
Sbjct 498 GTAHTLFT 505
>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1
SV=1
Length=492
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (44%), Gaps = 15/130 (12%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+I+F +T+ D L ++ S G + R + + + AFK +
Sbjct 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDR------------RASIMAFKKN- 306
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVI 748
D ++L+AT VA G+DI+ + V Y N I GR GRA G K +T +
Sbjct 307 DADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA-GKKGMAITLVTPLE 365
Query 749 EKEQINMYKE 758
KE + M KE
Sbjct 366 YKELLRMQKE 375
>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543
Score = 38.5 bits (88), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 10/133 (8%)
Query 250 LALP-AMKGKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIP 301
L LP A+ G++ A TG GKT L++ + L + P+ + ++ ++
Sbjct 38 LTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELA 97
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +V K+ G R I G + E + + D++I TP L++ LK+ +
Sbjct 98 IQIYNDAV--KFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVV 155
Query 362 SLSIFTLMIFDEC 374
SL + + + DE
Sbjct 156 SLRVCEICVLDEA 168
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1
PE=1 SV=2
Length=617
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (49%), Gaps = 17/125 (14%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D L +++ I+ T + T ++ L AFKA+
Sbjct 413 LTLIFVETKRMADQLTDFL------------IMQNFKATAIHGDRTQAERERALSAFKAN 460
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
+IL+AT+VA G+DI VI Y+ ++ + GR GRA + F ++N
Sbjct 461 -VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNN 519
Query 745 AGVIE 749
+++
Sbjct 520 QNIVK 524
>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/115 (35%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F +T+A + L G L L G NQ TG LD FKA G
Sbjct 317 IIFTRTKANAERL----SGLCNLLEFSATALHGDLNQNQRTGA--------LDLFKA-GK 363
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
+IL+AT VA G+DI ++VI Y+ + I GR RA R K L S
Sbjct 364 RSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 418
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 50/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q PA+ G + I A TG GKT + + L + Q A
Sbjct 95 KPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKL--WEDQQPYYACVLAPTRE 152
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q K F G R T I G ++ III TP L+++L+
Sbjct 153 LAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 212
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 213 SLKNLKFLVMDEA 225
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3
SV=1
Length=501
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F +T+A + L + L+ G NQN M LD FKA G
Sbjct 325 IIFTRTKANAERLSGLC------NLLEFSATALHGDLNQNQRM------GALDLFKA-GK 371
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
+IL+AT VA G+DI ++V+ Y+ + I GR RA R K L S
Sbjct 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (39%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
ED ++ SE + P + + KP Q + PA++G + I A TG GKT
Sbjct 76 EDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAF 135
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
+ + L + + A + +Q K F G R T I G
Sbjct 136 AIPILNRL--WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ III TP L+++L+ SL ++ DE
Sbjct 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEA 233
>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus
filamentous virus (isolate Iceland/Hveragerdi) OX=654908
GN=SIFV0022 PE=4 SV=1
Length=559
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 0/38 (0%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+LI+TS+ADEG+DI LV+L + IK+IQ GR
Sbjct 476 VLISTSLADEGLDIPNLRLVVLLTQGKSRIKLIQRIGR 513
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 33/237 (14%)
Query 241 FKPRNYQLELALPAMKGKNTI----ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
F+ RNYQ+ + N I I APTG GK+ +++L LK K+V+
Sbjct 172 FEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILK---NKNNAKIVYA 228
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
N + +Q F + ++ +SG E E+ +D I L+ + K
Sbjct 229 VNSTTLLKQ----FQNFAKKEDLPFVLVSGEIDEIKKGER----SDFIALSISYYYSKKK 280
Query 357 KGTIPSLSIFT----LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ L L+I DE H+T P N++ LD P +GL+A+
Sbjct 281 RNEHEKLKELVTNADLVIIDEAHHT----PANIVKSLLLD-------SPNSIRLGLSATP 329
Query 413 GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
D K E + + K+ ++D + + ++ L +E + Y P+ +K++ +I D
Sbjct 330 IREDGKEL-EIMGLLGKISFTIDYTELVRNRY-LVPIEYIRYIPE-IPKKLKLKIQD 383
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=1
Length=808
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 19/178 (11%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP----------AMKGKNTI 261
F+ DP + + PS + NL P L+ P A+ G++ +
Sbjct 208 FFSSDP----TTTDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDIL 263
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQKSVFSKYFERHG 318
A TG GKT ++ L +G+ G P E Q ++V E+ G
Sbjct 264 GSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG 323
Query 319 Y--RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R + G + N + DI+I TP L+++L +LS +++ DE
Sbjct 324 LDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEA 381
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DRS1 PE=3 SV=1
Length=808
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 19/178 (11%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP----------AMKGKNTI 261
F+ DP + + PS + NL P L+ P A+ G++ +
Sbjct 208 FFSSDP----TTTDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDIL 263
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQKSVFSKYFERHG 318
A TG GKT ++ L +G+ G P E Q ++V E+ G
Sbjct 264 GSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG 323
Query 319 Y--RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R + G + N + DI+I TP L+++L +LS +++ DE
Sbjct 324 LDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEA 381
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (49%), Gaps = 17/125 (14%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+T++FV+T+ + D L +++ I+ T + T ++ L AFKA+
Sbjct 413 LTLIFVETKRMADQLTDFL------------IMQNFKATAIHGDRTQAERERALSAFKAN 460
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSN 744
+IL+AT+VA G+DI VI Y+ ++ + GR GRA + F ++N
Sbjct 461 -VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNN 519
Query 745 AGVIE 749
+++
Sbjct 520 QNIVK 524
>sp|F4INA9|RECG_ARATH ATP-dependent DNA helicase homolog RECG,
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3
SV=1
Length=973
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/101 (31%), Positives = 58/101 (57%), Gaps = 16/101 (16%)
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY--E 716
G+L GR K++ ++ L+ F+ SG+ IL++T V + G+D+ +++++ E
Sbjct 800 GLLHGRMKSDD--------KEEALNKFR-SGETQILLSTQVIEIGVDVPDASMMVVMNAE 850
Query 717 YVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINM 755
G + ++ Q RGR GR R SKC L+ S+ +++ +NM
Sbjct 851 RFG-IAQLHQLRGRVGRGTRKSKCLLVGSSTNSLKR--LNM 888
>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3
SV=1
Length=532
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 112/300 (37%), Gaps = 57/300 (19%)
Query 501 NREFGTQKYEQW-----IVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
RE Q Y+ +V + C+ +P + + S + +A F +I+
Sbjct 203 TRELAMQIYDNIKELCDVVGLHAVCVYGGVPKEQQRSDLKRASF-------------VIA 249
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN------- 608
R+ D +D S V DE ++ L + FEE ++++ +R +
Sbjct 250 TPGRLCDLIDEGSCDLSKVSYLVLDEADRMLEKGFEEDIKKIIGSTRPTGRQTVMFSATW 309
Query 609 -PKLEDLC---------FILQEEYHLNPE---TITILFVKTRA----LVDALKNWIEGNP 651
P++ L ++ E L T ++ + RA L+D L+ + +
Sbjct 310 PPEVRKLAEGFMKTPTKVMIGERDELAANKRITQSVEVLDPRAKEGRLLDLLRQYANDDF 369
Query 652 KLSFLK---------PGILTGRGKTNQNTGMTLPAQKCI--LDAFKASGDHNILIATSVA 700
K+ LT RG L Q+ LD FK G+ NIL+AT VA
Sbjct 370 KILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFK-KGEKNILLATDVA 428
Query 701 DEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
G+DI LVI + V + + I GR G L T + + IN+ +
Sbjct 429 ARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHEKHLSGALINVLR 488
>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3
SV=2
Length=475
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/57 (44%), Positives = 31/57 (54%), Gaps = 2/57 (4%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC 738
L+ FK SG NILIAT VA G+DI ++VI Y+ + I GR AR K
Sbjct 346 LNKFK-SGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGR-TARAGKS 400
>sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
Length=2136
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+L+ + K K+++ A + ++ F
Sbjct 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 556
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K +G V ++G ++ ++ + II+ TP+ + K G + L++
Sbjct 557 KRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIV 613
Query 371 FDECH 375
DE H
Sbjct 614 LDEIH 618
Score = 38.5 bits (88), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query 259 NTIICAPTGCGKTFVSLLICEHH--LKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFE 315
N + APTG GKT IC L+ Q +G+ V+ + EQ + K+ +
Sbjct 1345 NVFVGAPTGSGKT-----ICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQD 1399
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLK-KGTIPSLSIFTLMIF 371
R +V ++G T+ ++ +++ +III TP+ IL K + + ++++F +
Sbjct 1400 RLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF---VV 1453
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
DE H +GG +GP+ +VI
Sbjct 1454 DEVH------------------LIGGENGPVLEVI 1470
>sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1
Length=2139
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT V+L+ + K K+++ A + ++ F
Sbjct 497 ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 556
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMI 370
K +G V ++G ++ ++ + II+ TP+ + K G + L++
Sbjct 557 KRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIV 613
Query 371 FDECH 375
DE H
Sbjct 614 LDEIH 618
Score = 38.5 bits (88), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 36/155 (23%)
Query 259 NTIICAPTGCGKTFVSLLICEHH--LKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFE 315
N + APTG GKT IC L+ Q +G+ V+ + EQ + K+ +
Sbjct 1348 NVFVGAPTGSGKT-----ICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYEKFQD 1402
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ---ILVNNLK-KGTIPSLSIFTLMIF 371
R +V ++G T+ ++ +++ +III TP+ IL K + + ++++F +
Sbjct 1403 RLNKKVVLLTGETSTDL---KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF---VV 1456
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
DE H +GG +GP+ +VI
Sbjct 1457 DEVH------------------LIGGENGPVLEVI 1473
>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
OX=331117 GN=prp5 PE=3 SV=1
Length=1193
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/144 (30%), Positives = 67/144 (47%), Gaps = 22/144 (15%)
Query 606 NENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGIL 661
NE+ K L IL Y N + ++FV + D L + +G P +S I
Sbjct 786 NEDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMS-----IH 840
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G+ + ++++ ++ FKA G ILIATSVA G+D+ Q LV+ Y+ ++
Sbjct 841 GGKDQIDRDS---------TIEDFKA-GIFPILIATSVAARGLDVKQLKLVVNYDAPNHL 890
Query 722 IKMIQTRGR-GRA--RGSKCFLLT 742
+ GR GRA G+ LT
Sbjct 891 EDYVHRAGRTGRAGNTGTAVTFLT 914
>sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5
PE=3 SV=1
Length=487
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 62/240 (26%), Positives = 104/240 (43%), Gaps = 50/240 (21%)
Query 576 AAGFDEIEQDLTQRFEE-KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFV 634
A+ F +LT + EE ++ ++ + D S+E K + L + Y L +I+FV
Sbjct 274 ASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQL----YGLLTVASSIIFV 329
Query 635 KTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
KTRA ++ + EG+ S LTG G+ + ++D F+A G
Sbjct 330 KTRASAAEIEKRMVAEGHTVAS------LTG--------GIEGSQRDAVIDQFRA-GQAK 374
Query 693 ILIATSVADEGIDIAQCNLVILYEY--------------VGNVIKMIQTRGR-GRARGSK 737
+LI T+V GID++ ++VI Y+ + I GR GR S
Sbjct 375 VLITTNVLARGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVGVSI 434
Query 738 CFLLTSNAGVIEKEQINMYK--EKMMNDSILRLQT--WDEA--VFREKILHIQTHEKFIR 791
F V +E+ NM ++ N +I R+ T WDE + ++ I + + +F R
Sbjct 435 SF-------VSNREEWNMLNQIQQYFNCTIQRVDTKDWDEVEDIIKKTIKNTRAQAQFGR 487
>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=FAL1 PE=3 SV=1
Length=399
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/196 (26%), Positives = 85/196 (43%), Gaps = 28/196 (14%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+++ KD L+ K F S D ++ L +R E L+ ++ + E+ K
Sbjct 202 VVVVSATMSKDILEVTKKFMS-------DPVKI-LVKRDEISLEGIKQYYVNVEKEDWKF 253
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ LC + Y T ++F T+ VD W+ + KL+ +++ G Q
Sbjct 254 DTLC----DLYDSLTITQCVIFCNTKKKVD----WL--SAKLTQSNFAVVSMHGDMKQED 303
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQTR 728
+ ++ F+ SG +LI+T V GID+ Q +LVI Y E + N I I
Sbjct 304 ------RNKVMSDFR-SGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRS 356
Query 729 GRGRARGSKCFLLTSN 744
GR +G +TS+
Sbjct 357 GRFGRKGVAINFITSS 372
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/122 (32%), Positives = 53/122 (43%), Gaps = 18/122 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + K+ Q G
Sbjct 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGD-------KSQQERGW-- 382
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct 383 -----VLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query 736 SK 737
+K
Sbjct 436 TK 437
>sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp5 PE=3 SV=1
Length=482
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/144 (28%), Positives = 70/144 (49%), Gaps = 22/144 (15%)
Query 576 AAGFDEIEQDLTQRFEE-KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFV 634
A+ F ++T + EE ++ ++ + D SN+ K + L + Y L +I+FV
Sbjct 270 ASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKYQTLVNL----YGLLTVGSSIIFV 325
Query 635 KTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
KTRA ++ + EG+ S LTG G+ + ++D F+A G
Sbjct 326 KTRASAQEIEKRMVAEGHTVAS------LTG--------GIEGSQRDAVIDQFRA-GHAK 370
Query 693 ILIATSVADEGIDIAQCNLVILYE 716
+LI T+V GID++ ++VI Y+
Sbjct 371 VLITTNVLARGIDVSTVSMVINYD 394
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/57 (44%), Positives = 31/57 (54%), Gaps = 2/57 (4%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC 738
L+ FKA G NILIAT VA G+DI ++VI Y+ + I GR AR K
Sbjct 347 LNKFKA-GKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGR-TARAGKS 401
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 54/211 (26%)
Query 563 ALDYLKDFF----------SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
A+D+L DF +N A E+ D +R + L LE +S+ EN K+
Sbjct 306 AMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKR-SKLLSHLEKISQ----ENGKV- 359
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQN 670
++FV T+ + D L ++ +G P L+ G Q
Sbjct 360 ------------------LIFVATKRVADDLTKFLRMDGWPALAI--------HGDKQQ- 392
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ +L FK SG I++AT VA G+D+ VI Y++ N I GR
Sbjct 393 -----AERDWVLAEFK-SGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGR 446
Query 731 -GRA--RGSKCFLLTSNAGVIEKEQINMYKE 758
GRA +G+ T + +E + + +E
Sbjct 447 TGRAGRKGTSYTYFTMDNSKAARELVQILRE 477
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP2 PE=3 SV=1
Length=540
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 85/211 (40%), Gaps = 54/211 (26%)
Query 563 ALDYLKDFF----------SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
A+D+L DF +N A E+ D +R + L LE +S+ EN K+
Sbjct 306 AMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKR-SKLLSHLEKISQ----ENGKV- 359
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQN 670
++FV T+ + D L ++ +G P L+ G Q
Sbjct 360 ------------------LIFVATKRVADDLTKFLRMDGWPALAI--------HGDKQQ- 392
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ +L FK SG I++AT VA G+D+ VI Y++ N I GR
Sbjct 393 -----AERDWVLAEFK-SGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGR 446
Query 731 -GRA--RGSKCFLLTSNAGVIEKEQINMYKE 758
GRA +G+ T + +E + + +E
Sbjct 447 TGRAGRKGTSYTYFTMDNSKAARELVQILRE 477
>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503
Score = 38.1 bits (87), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 43/94 (46%), Gaps = 6/94 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+AFK +G +L+AT VA G+DI LVI + V + + I GR A G
Sbjct 381 LEAFK-TGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439
Query 739 FLLTSNAGVIEKEQINMYKEKMMN--DSILRLQT 770
L T IN+ + + D++L+ T
Sbjct 440 TLFTEADKAQSGALINVLRAAKQDVPDALLKFGT 473
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/92 (35%), Positives = 44/92 (48%), Gaps = 3/92 (3%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
MT + L+ FK SG +IL+AT VA G+DI +LVI Y+ N + GR
Sbjct 311 MTQSLRLASLNKFK-SGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTA 369
Query 732 RA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
RA R K L + V ++I + K M
Sbjct 370 RAGRSGKSITLVTQYDVEILQRIESHIGKKMT 401
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=RRP3 PE=3 SV=1
Length=484
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/92 (35%), Positives = 44/92 (48%), Gaps = 3/92 (3%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
MT + L+ FK SG +IL+AT VA G+DI +LVI Y+ N + GR
Sbjct 311 MTQSLRLASLNKFK-SGGRSILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTA 369
Query 732 RA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
RA R K L + V ++I + K M
Sbjct 370 RAGRSGKSITLVTQYDVEILQRIESHIGKKMT 401
>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962
GN=rhpA PE=1 SV=1
Length=492
Score = 38.1 bits (87), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (44%), Gaps = 15/130 (12%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+I+F +T+ D L ++ S G + R + + + AFK +
Sbjct 260 SIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDR------------RSSIMAFKKN- 306
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVI 748
D ++L+AT VA G+DI+ + V Y N I GR GRA G K +T +
Sbjct 307 DADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRA-GKKGMAITLVTPLE 365
Query 749 EKEQINMYKE 758
KE + M KE
Sbjct 366 YKELLRMQKE 375
>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3
PE=3 SV=1
Length=503
Score = 37.7 bits (86), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/94 (31%), Positives = 43/94 (46%), Gaps = 6/94 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+AFK +G +L+AT VA G+DI LVI + V + + I GR A G
Sbjct 381 LEAFK-TGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAI 439
Query 739 FLLTSNAGVIEKEQINMYKEKMMN--DSILRLQT 770
L T IN+ + + D++L+ T
Sbjct 440 TLFTETDKAQSGALINVLRAAKQDVPDALLKFGT 473
>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
MT A+ L+AFK +G N+L+AT VA G+DI LVI + + GR G
Sbjct 473 MTQEARFKALEAFK-TGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTG 531
Query 732 RA 733
RA
Sbjct 532 RA 533
>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 /
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746
GN=PRP28 PE=3 SV=2
Length=575
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 75/330 (23%), Positives = 130/330 (39%), Gaps = 60/330 (18%)
Query 458 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWI 513
K + +VE + ++ ++ T LA +I K+ + + + G +YE+ +
Sbjct 217 KDYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETV 276
Query 514 VTVQK-ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD-----ALDYL 567
+VQ A +V P + +S + L + L + E RM D AL +
Sbjct 277 KSVQDGAHIVVATPGRLIDSAEKGLIDLSQCY------HLTMDEADRMIDMGFEKALQSI 330
Query 568 KDFFSNVRAAGFD------EIEQDLTQRFEEKLQE-LESVSRD----PS----------- 605
F + ++GF +++ +T F + +E +++D P+
Sbjct 331 LSFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIV 390
Query 606 -NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK------LSFLKP 658
N N K E L + + LN +T ++ AL+ I + +F +
Sbjct 391 DNINQKFEYLGDNVDSQEELNAP-------RTNKMISALRQHIRETEQPLIIIFANFKRT 443
Query 659 GILTGRGKTNQNTGMTL-----PAQKCILDAFKASGDH--NILIATSVADEGIDIAQCNL 711
L +NQN G + +Q+ A + +H N+LIAT VA GIDI +L
Sbjct 444 CELLSVELSNQNVGSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSL 503
Query 712 VILYEYVGNVIKMIQTRGR-GRARGSKCFL 740
V+ Y + I GR GRA S L
Sbjct 504 VVNYHMPKRFDEYIHRIGRTGRAGKSGASL 533
>sp|E9PZM4|CHD2_MOUSE Chromodomain-helicase-DNA-binding protein
2 OS=Mus musculus OX=10090 GN=Chd2 PE=1 SV=1
Length=1827
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (48%), Gaps = 9/107 (8%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + V++++ N +Q + R G
Sbjct 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL--RLQTWDEAVF 776
K + L + G +E+E I K+KM+ D ++ R+ T V
Sbjct 906 QKKQVNIYRLVTK-GTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVL 951
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=RRP3 PE=1 SV=2
Length=501
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F +T+A + L + L+ G NQN M LD FKA G
Sbjct 325 IIFTRTKANAERLSGLC------NLLEFSATALHGDLNQNQRM------GSLDLFKA-GK 371
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
+IL+AT VA G+DI ++V+ Y+ + I GR RA R K L S
Sbjct 372 RSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVS 426
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (39%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
ED ++ SE + P + + KP Q + PA++G + I A TG GKT
Sbjct 76 EDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAF 135
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
+ + L + + A + +Q K F G R T I G
Sbjct 136 AIPILNRL--WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ III TP L+++L+ SL ++ DE
Sbjct 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEA 233
>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGV 747
SG N+L+AT +A GID+ +LV+ + N+ GR R K + + G
Sbjct 700 SGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGR-TGRAGKSGVAITFLGN 758
Query 748 IEKEQINMYKEKMMNDSILRL 768
+ + + K+ +M SI R+
Sbjct 759 EDADTMYDLKQMLMKSSISRV 779
>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631
Score = 38.1 bits (87), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/140 (28%), Positives = 61/140 (44%), Gaps = 10/140 (7%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVV 294
KP Q + ++G + I+ A TG GKT L+ HL P G V+
Sbjct 243 VKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVL 302
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
++ ++ + + SKY + G + I G N +E I + DIII TP L N+
Sbjct 303 TPTRELALHVEAEC--SKYSYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-ND 358
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L+ +L T ++ DE
Sbjct 359 LQMNNSVNLRSITYLVIDEA 378
>sp|Q3IU46|HELS_NATPD ATP-dependent DNA helicase Hel308 OS=Natronomonas
pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997
/ JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara) OX=348780
GN=hel308 PE=3 SV=1
Length=747
Score = 38.1 bits (87), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (45%), Gaps = 17/158 (11%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
++ + PT GKT V+ L L +G G ++ + +++ F+ FE +
Sbjct 41 ESLVASVPTASGKTLVAQLAM---LSAIDRG--GTALYIVPLRALASEKREEFAA-FEEY 94
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 377
G V G++ + E+ + + + DII+ T + V++L + P + ++ DE H
Sbjct 95 GLSV-GVTTGSYEDTG--EWLADKDIIVATSEK-VDSLVRNGAPWIDDLDCVVADEVHLV 150
Query 378 SKQH--PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
+H P + L + P QV+ L+A+VG
Sbjct 151 DDEHRGPTLEVTLAKLRR-----VNPNLQVVALSATVG 183
>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 /
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211
Score = 38.1 bits (87), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (47%), Gaps = 22/144 (15%)
Query 606 NENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGIL 661
NE+ K L IL Y N + ++FV + D L + +G P +S I
Sbjct 804 NEDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRKGYPCMS-----IH 858
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G+ + ++++ ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 859 GGKDQIDRDS---------TIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHL 908
Query 722 IKMIQTRGR-GRA--RGSKCFLLT 742
+ GR GRA G+ LT
Sbjct 909 EDYVHRAGRTGRAGNTGTAVTFLT 932
>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/186 (26%), Positives = 76/186 (41%), Gaps = 25/186 (13%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+++ KD L+ K F S+ L +R E L ++ D E K
Sbjct 201 VVVVSATMSKDILEITKKFMSDPVKI--------LVKRDEISLDVIKQYYVDVEKEEWKF 252
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ LC + Y T ++F TR VD W+ + KL+ + + G Q
Sbjct 253 DTLC----DLYDSLTITQCVIFCNTRKKVD----WL--SRKLTQTNFSVSSMHGDMKQE- 301
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
+ +++ F+ SG +LI+T V GID+ Q +LVI Y+ N+ I GR
Sbjct 302 -----ERDQVMNDFR-SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRS 355
Query 732 RARGSK 737
G K
Sbjct 356 GRFGRK 361
>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP3 PE=3 SV=1
Length=605
Score = 37.7 bits (86), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
MT A+ L+AFK +G N+L+AT VA G+DI LVI + + GR G
Sbjct 473 MTQEARFKALEAFK-TGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTG 531
Query 732 RA 733
RA
Sbjct 532 RA 533
>sp|Q8XIZ5|POTA_CLOPE Spermidine/putrescine import ATP-binding
protein PotA OS=Clostridium perfringens (strain 13 / Type A)
OX=195102 GN=potA PE=3 SV=1
Length=349
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 33/68 (49%), Gaps = 9/68 (13%)
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF---FANQIPVYEQQ 306
L+L K + + P+GCGKT +I F G+VVF N IP YE+Q
Sbjct 25 LSLNIKKNEFLTLLGPSGCGKTTTLKIIA-----GFETADSGQVVFENNIINDIPPYERQ 79
Query 307 -KSVFSKY 313
+VF KY
Sbjct 80 LNTVFQKY 87
>sp|Q0TNZ3|POTA_CLOP1 Spermidine/putrescine import ATP-binding
protein PotA OS=Clostridium perfringens (strain ATCC 13124
/ DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A) OX=195103
GN=potA PE=3 SV=1
Length=349
Score = 37.4 bits (85), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 33/68 (49%), Gaps = 9/68 (13%)
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF---FANQIPVYEQQ 306
L+L K + + P+GCGKT +I F G+VVF N IP YE+Q
Sbjct 25 LSLNIKKNEFLTLLGPSGCGKTTTLKIIA-----GFETADSGQVVFENNIINDIPPYERQ 79
Query 307 -KSVFSKY 313
+VF KY
Sbjct 80 LNTVFQKY 87
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein
2 OS=Homo sapiens OX=9606 GN=CHD2 PE=1 SV=2
Length=1828
Score = 38.1 bits (87), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + V++++ N +Q + R G
Sbjct 846 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 905
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL 766
K + L + G +E+E I K+KM+ D ++
Sbjct 906 QKKQVNIYRLVTK-GTVEEEIIERAKKKMVLDHLV 939
>sp|Q0SRL2|POTA_CLOPS Spermidine/putrescine import ATP-binding
protein PotA OS=Clostridium perfringens (strain SM101 / Type
A) OX=289380 GN=potA PE=3 SV=2
Length=349
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 33/68 (49%), Gaps = 9/68 (13%)
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF---FANQIPVYEQQ 306
L+L K + + P+GCGKT +I F G+VVF N IP YE+Q
Sbjct 25 LSLNIKKNEFLTLLGPSGCGKTTTLKIIA-----GFETADSGQVVFENNIINDIPPYERQ 79
Query 307 -KSVFSKY 313
+VF KY
Sbjct 80 LNTVFQKY 87
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella
multocida (strain Pm70) OX=272843 GN=recG PE=3 SV=1
Length=693
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 46/141 (33%), Positives = 69/141 (49%), Gaps = 34/141 (24%)
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKC-ILDAFKASGDHNILIATSVADEGIDIAQCNL 711
L L+ G++ GR K PA+K I+ AFK + + ++L+AT+V + G+D+ +L
Sbjct 515 LPHLRIGLVHGRMK---------PAEKQDIMQAFKQA-EIDLLVATTVIEVGVDVPNASL 564
Query 712 VIL--YEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
+I+ E +G + ++ Q RGR GR S C L MYK + S R
Sbjct 565 MIIENAERLG-LSQLHQLRGRVGRGTTASFCVL--------------MYKPPLGKISQKR 609
Query 768 LQ----TWDEAVFREKILHIQ 784
LQ T D V EK L I+
Sbjct 610 LQVLRDTQDGFVISEKDLEIR 630
>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5
PE=1 SV=1
Length=503
Score = 37.7 bits (86), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (64%), Gaps = 2/47 (4%)
Query 671 TGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
TG AQ+ I+D+F+ G +L+ T+V GID++Q NLV+ Y+
Sbjct 383 TGNLEGAQRDAIMDSFRV-GTSKVLVTTNVIARGIDVSQVNLVVNYD 428
>sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1
Length=814
Score = 37.7 bits (86), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/70 (33%), Positives = 32/70 (46%), Gaps = 4/70 (6%)
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----G 731
P + L AF D +LI T ++ G+D+ LVI Y+ V + GR G
Sbjct 515 PVRSATLKAFSECKDPAVLITTDISSRGLDVPAVELVIEYDPAFAVPDHVHRIGRTARAG 574
Query 732 RARGSKCFLL 741
RA + FLL
Sbjct 575 RAGKAVLFLL 584
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G G N M + L+ FK G +IL+AT VA G+DI +LVI Y+ N
Sbjct 382 GFGAIPINGDMDQGKRLASLNKFK-QGTKSILVATDVAARGLDIPSVDLVINYDVPTNSK 440
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ + GR G+ +T ++ + + MY+
Sbjct 441 EYVHRVGRTARAGNSGRAIT----IVTQYDVEMYQ 471
>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 /
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746
GN=PRP5 PE=3 SV=2
Length=862
Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (54%), Gaps = 6/67 (9%)
Query 684 AFKASGDHN---ILIATSVADEGIDIAQCNLVILYE---YVGNVIKMIQTRGRGRARGSK 737
A K D N +LIATS+A G+D+ NLVI Y+ ++ + + + GR A G+
Sbjct 564 AIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRVGRTGRAGATGTA 623
Query 738 CFLLTSN 744
L+ S+
Sbjct 624 VTLVLSS 630
>sp|P0DW40|HAMB_BACCE Hachiman protein HamB OS=Bacillus cereus
OX=1396 GN=hamB PE=3 SV=1
Length=1120
Score = 37.7 bits (86), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/129 (26%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+K +I PT GKT V+ + L K P ++ A + + + S F
Sbjct 282 LKNDGFVIGMPTSSGKTKVAEVTILKTLTKSPGAL---CIYIAPYRSLANEVEFSLSSMF 338
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E GY+V+ + G + + Q+ + ++II+TP+ + L+ I L+I DE
Sbjct 339 EIMGYQVSQLYGGSQTSPLDRQLTKQANVIIVTPEKAKSMLRSNKDLKDRI-QLVIIDEG 397
Query 375 HNTSKQHPY 383
H Q Y
Sbjct 398 HLVGFQPRY 406
>sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2
Length=574
Score = 37.4 bits (85), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/111 (28%), Positives = 52/111 (47%), Gaps = 12/111 (11%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICE----HHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
P M GK+ + A TG GKT +S LI H LK P+ G ++ P E
Sbjct 83 PLMAGKDVLGAAQTGSGKT-LSFLIPAIEMLHRLKFKPRNGTGAIII----SPTRELALQ 137
Query 309 VF--SKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+F +K H ++ G I G +++ + ++I+ TP L+++L+
Sbjct 138 IFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQ 188
>sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3
SV=1
Length=2145
Score = 37.7 bits (86), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (46%), Gaps = 11/137 (8%)
Query 247 QLELALPAMKGK-NTIICAPTGCGKTFVSLLI----CEHHLKKFPQGQ--KGKVVFFANQ 299
Q L A++ K + ++CAPTG GKT V+LL +HL + + + K+V+ A
Sbjct 479 QSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPM 538
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ ++ FSK G V ++G + EQ + +I+ TP+ V K G
Sbjct 539 KSLVQEMVGSFSKRLAPFGITVGEMTGDA--QMSKEQFMATQ-VIVCTPEKYDVVTRKGG 595
Query 359 TIPSLSIFTLMIFDECH 375
+ L+I DE H
Sbjct 596 ERAYNQMVRLLIIDEIH 612
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (24%), Positives = 46/96 (48%), Gaps = 13/96 (14%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I+CAP G GKT ++ L H + P+ K V+ P+ + V++ + R
Sbjct 1338 ENVIVCAPNGSGKTAIAELAVLRHFENTPE---AKAVYIT---PMEDMATKVYADWKRRL 1391
Query 318 ----GYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
G+ + ++G ++ ++ + +II TP+
Sbjct 1392 EPAIGHTIVLLTGEQTMDL---KLAQRGQLIISTPE 1424
>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806
GN=deaD PE=3 SV=1
Length=601
Score = 37.4 bits (85), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 59/121 (49%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQK-SVFSKY 313
++G++ + A TG GKT L H+L + + V+ ++ V + S FSKY
Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKY 100
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G V + G + + + + I++ TP L+++LK+GT+ +LS ++ DE
Sbjct 101 M--IGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTL-NLSNLHGLVLDE 157
Query 374 C 374
Sbjct 158 A 158
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/119 (28%), Positives = 52/119 (44%), Gaps = 15/119 (13%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ TI+FV+T+ + +E N G N M ++ L+ K
Sbjct 245 SATIIFVRTKNATLEVSEALERN------------GYNSAALNGDMNQALREQTLERLK- 291
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 744
+G +ILIAT VA G+D+ + + VI Y+ + + GR GRA R + L N
Sbjct 292 NGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 350
>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) OX=315456
GN=mfd PE=3 SV=1
Length=1142
Score = 37.7 bits (86), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 17/108 (16%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEY-VGNVIKMIQTR---GRGRARGSKCFLLTS 743
+G +IL++T++ + GIDIA+ N +++++ + + ++ Q R GRG+ RG + S
Sbjct 840 AGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIGRGKVRGYAYLTVAS 899
Query 744 NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
+ +KM + S+ RL+ + I +H+ +R
Sbjct 900 H-------------KKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLR 934
>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1
PE=3 SV=1
Length=399
Score = 37.4 bits (85), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (5%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGS 736
I++ F+ G+ +LI+T V GID+ Q +LVI Y+ N I I GR +G+
Sbjct 306 SIMNDFR-RGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGT 364
Query 737 KCFLLTSNAGVIEKEQINMYKEKM 760
L+T + V KE Y K+
Sbjct 365 AINLITKDDVVTLKEFEKYYSTKI 388
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614
Score = 37.4 bits (85), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 18/122 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI--------HGDKSQQ----- 378
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ +L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct 379 -ERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query 736 SK 737
+K
Sbjct 436 TK 437
>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/120 (28%), Positives = 53/120 (44%), Gaps = 14/120 (12%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
HLNP + I+F T+ D + ++ G +K G+L G G+T +K ++
Sbjct 242 HLNP-YLGIVFANTKNTADHIAQYLTGKG----MKIGLLHG--------GLTPRERKKVM 288
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
+ +IAT +A GIDI + VI YE ++ + GR GS +T
Sbjct 289 KQIN-DLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMT 347
>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/120 (27%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L + N +TI+F +T+ + D L +++ +G P + G +Q
Sbjct 403 VLLDLLSANDNGLTIIFTETKRMADNLADFLYDQGFPATAI--------HGDRSQYE--- 451
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
++ L AFK +G IL+AT+VA G+DI + ++ Y+ ++ + GR GRA
Sbjct 452 ---REKALAAFK-TGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRTGRA 507
>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 36/66 (55%), Gaps = 4/66 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGS 736
I++ F+ SG+ +LI+T V GID+ Q +LVI Y+ N I I GR +G+
Sbjct 306 AIMNDFR-SGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRKGT 364
Query 737 KCFLLT 742
LLT
Sbjct 365 AINLLT 370
>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/123 (31%), Positives = 53/123 (43%), Gaps = 18/123 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI--------HGDKSQQ----- 378
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ +L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct 379 -ERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query 736 SKC 738
+K
Sbjct 436 TKT 438
>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 18/122 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI--------HGDKSQQ----- 378
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ +L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct 379 -ERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query 736 SK 737
+K
Sbjct 436 TK 437
>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L+ F+ G +L+AT VA G+DI +L+I YE + + GR GRA G+
Sbjct 377 LNGFR-QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAI 435
Query 739 FLLTSN 744
+ TS+
Sbjct 436 LMFTSS 441
>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 2/56 (4%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+GD I++ATSVA G+D+ + LVI Y+ ++ + GR GRA G+K +T
Sbjct 704 NGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRA-GNKGTCIT 758
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/132 (22%), Positives = 61/132 (46%), Gaps = 10/132 (8%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK--KFPQGQKGKVVFFANQIPVYEQQK 307
A+PA M G++ I A TG GKT LL H++ + G +G + + P E
Sbjct 433 AIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMS--PTRELAS 490
Query 308 SVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPS 362
++ + + + R + G ++ + + + + +++I TP +++ L G + +
Sbjct 491 QIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVTN 550
Query 363 LSIFTLMIFDEC 374
+ T ++ DE
Sbjct 551 VRRTTYIVMDEA 562
>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (61%), Gaps = 2/56 (4%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+GD I++ATSVA G+D+ + LVI Y+ ++ + GR GRA G+K +T
Sbjct 704 NGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRA-GNKGTCIT 758
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/132 (22%), Positives = 61/132 (46%), Gaps = 10/132 (8%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLK--KFPQGQKGKVVFFANQIPVYEQQK 307
A+PA M G++ I A TG GKT LL H++ + G +G + + P E
Sbjct 433 AIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMS--PTRELAS 490
Query 308 SVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPS 362
++ + + + R + G ++ + + + + +++I TP +++ L G + +
Sbjct 491 QIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGRVTN 550
Query 363 LSIFTLMIFDEC 374
+ T ++ DE
Sbjct 551 VRRTTYIVMDEA 562
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614
Score = 37.4 bits (85), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 18/122 (15%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L EE E TI+FV+T+ D L + +G P + G +Q
Sbjct 332 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGI--------HGDKSQQ----- 378
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ +L+ FK G ILIAT VA G+D+ VI Y+Y + I GR AR
Sbjct 379 -ERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGR-TARS 435
Query 736 SK 737
+K
Sbjct 436 TK 437
>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=ROK1 PE=3 SV=1
Length=570
Score = 37.4 bits (85), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/134 (30%), Positives = 68/134 (51%), Gaps = 13/134 (10%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSL--LICEHHLKKFPQGQKGKVVF----FANQIPVY 303
A+P A+ ++ + CAPTG GKT L LI + K QG KG ++ ANQI +
Sbjct 161 AIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKGLIISPTKELANQI--F 218
Query 304 EQQKSVFSKYF--ERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTI 360
+ + ++ F ++ +V +S + + + + I + DII+ TP L++ +K +
Sbjct 219 LECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDIIVSTPLRLIDVVKNEAL 278
Query 361 PSLSIFTLMIFDEC 374
LS +IFDE
Sbjct 279 -DLSQVKHLIFDEA 291
>sp|B9DFG3|ISE2_ARATH DExH-box ATP-dependent RNA helicase DExH15
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISE2 PE=1
SV=2
Length=1171
Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/136 (26%), Positives = 61/136 (45%), Gaps = 22/136 (16%)
Query 250 LALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LA+ A ++G + ++ APT GKT ++ KG+ +F+ + QK
Sbjct 161 LAIEAFLRGSSVVVSAPTSSGKTLIA------EAAAVSTVAKGRRLFYTTPLKALSNQK- 213
Query 309 VFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
F ++ E G G ++G +A N ++ I+I+T +IL N L + + S
Sbjct 214 -FREFRETFGDDNVGLLTGDSAIN-------KDAQIVIMTTEILRNMLYQSVGMASSGTG 265
Query 368 L-----MIFDECHNTS 378
L ++ DE H S
Sbjct 266 LFHVDAIVLDEVHYLS 281
>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/58 (40%), Positives = 31/58 (53%), Gaps = 1/58 (2%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
MT + L+ FKA G+ NIL+ T VA G+DI ++VI Y+ N I GR
Sbjct 294 MTQSKRLGALNKFKA-GECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGR 350
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2
SV=1
Length=770
Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/139 (26%), Positives = 65/139 (47%), Gaps = 10/139 (7%)
Query 242 KPRNYQLELALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q + ALP + G++ I A TG GKT +L H+ P+ +K +
Sbjct 241 KPTTIQCQ-ALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCA 299
Query 301 PVYEQQKSVF---SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
P E ++ K+ + + RV + G ++ +++ +I+I TP L++ LK
Sbjct 300 PTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLK- 358
Query 358 GTIPSLSIF--TLMIFDEC 374
+ +L +F T ++ DE
Sbjct 359 --MKALKMFRATYLVLDEA 375
>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
OX=341663 GN=prp5 PE=3 SV=1
Length=1181
Score = 37.4 bits (85), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 37/68 (54%), Gaps = 4/68 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGS 736
++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++ + GR GRA G+
Sbjct 842 STIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT 900
Query 737 KCFLLTSN 744
LT +
Sbjct 901 AVTFLTED 908
>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1
Length=483
Score = 37.0 bits (84), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 15/109 (14%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSFLKPGILTGRGKT 667
P +D IL + Y L +++FV+TR + ++ +E + K+S L G G+
Sbjct 296 PTEKDKYDILCKLYGLMTIGSSVIFVRTRETANEIQKRMEADGHKVSALH-GAYEGQ--- 351
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
++ +LD F+ SG +LI T+V GID++ ++VI Y+
Sbjct 352 ---------SRDVLLDEFR-SGRSKVLITTNVLARGIDVSSVSMVINYD 390
>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
OX=237561 GN=PRP5 PE=3 SV=1
Length=884
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 38/69 (55%), Gaps = 6/69 (9%)
Query 692 NILIATSVADEGIDIAQCNLVILYE---YVGNVIKMIQTRGRGRARGSKCFLLTSNAGVI 748
NILIATS+A G+D+ LVI ++ ++ + + + GR A+G+ ++S+
Sbjct 608 NILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQ--- 664
Query 749 EKEQINMYK 757
KE N+ K
Sbjct 665 PKEVFNLVK 673
>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) OX=272944
GN=mfd PE=3 SV=1
Length=1122
Score = 37.4 bits (85), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (63%), Gaps = 6/62 (10%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILY--EYVGNVIKMIQTR---GRGRARGSKCFLLT 742
+G +IL++T++ + GIDIA+ N +I++ + +G + ++ Q R GRG+ RG +
Sbjct 841 AGKFDILVSTTIIESGIDIAEANTMIIHNADMLG-LSQLYQLRGRIGRGKMRGYAYLTVA 899
Query 743 SN 744
S+
Sbjct 900 SH 901
>sp|Q7U9X5|SYK_PARMW Lysine--tRNA ligase OS=Parasynechococcus
marenigrum (strain WH8102) OX=84588 GN=lysS PE=3 SV=1
Length=502
Score = 37.0 bits (84), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (10%)
Query 56 LFL-KFLLELQEEGWFR---GFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQ 111
LFL K LE Q+EGWF+ G +D D G SG + + K+ ++R+L K LQ
Sbjct 82 LFLEKAGLEAQQEGWFKQITGLVDGGDWLGVSGTLRRTDRGELSV--KVSDWRMLTKALQ 139
Query 112 P 112
P
Sbjct 140 P 140
>sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2
Length=504
Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (43%), Gaps = 10/110 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLIC---EHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
P M G++ + A TG GKT LL H LK P+ G +V P E +
Sbjct 72 PLMAGRDVLGAAKTGSGKTLAFLLPAIEMLHSLKFKPRNGTGVIVI----TPTRELALQI 127
Query 310 FS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
F + E H + G E++ + +++I TP L+++L+
Sbjct 128 FGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQ 177
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC694.02
PE=3 SV=1
Length=1717
Score = 37.4 bits (85), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 49/191 (26%), Positives = 76/191 (40%), Gaps = 31/191 (16%)
Query 199 DLEDKMETSDIQIFYQEDPECQNL--------SENSCPPSEVSDTNLYSPFKPRNYQLEL 250
DLED E D+++ Y P Q L S S P S V+ F P +Q E
Sbjct 694 DLED--EEFDLEVPYTS-PTFQLLHFGEYMERSMGSAPDSRVA-------FDPDEWQRET 743
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+ ++ + APT GKTF+S E L+ G V++ A + Q +
Sbjct 744 LDILDRDESVFVVAPTSSGKTFISFYAMEKVLR---DNDDGVVIYVAPTKALVNQLSAEV 800
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENN----DIIILTPQILVNNLKKGTIPSLSIF 366
F +H +G T +V NN ++I P +L + L + + +
Sbjct 801 YARFNKHYPH----AGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANAWCP 856
Query 367 TL--MIFDECH 375
+ +IFDE H
Sbjct 857 KIRRIIFDEIH 867
>sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex
subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3
SV=1
Length=2195
Score = 37.4 bits (85), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 48/202 (24%), Positives = 88/202 (44%), Gaps = 26/202 (13%)
Query 183 SELWIVEKGIKDVETEDL----EDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLY 238
S+ W+ +GI+++ L +D++ +++ + Q L + + + +
Sbjct 1272 SDRWLGSEGIREISFRHLVLPQQDRVVNTELL-------DLQPLPKEALKNKDFESLFKF 1324
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
S F P Q+ L N ++ +PTG GKT + L K F KVV+ A
Sbjct 1325 SHFNPIQTQVFHTL-YYTNNNVLLGSPTGSGKTICAELAM---FKVFRDEPHMKVVYIAP 1380
Query 299 -QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ----ILVN 353
+ V E+ K+ E+ G ++ ++G N+ ++N DI+ TP+ I N
Sbjct 1381 LKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIA---LQNADIVTTTPEKWDGISRN 1437
Query 354 NLKKGTIPSLSIFTLMIFDECH 375
+ + S+S L+I DE H
Sbjct 1438 WKNRSYVTSVS---LLIIDEIH 1456
>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L+ F+ G +L+AT VA G+DI +L+I YE + + GR GRA G+
Sbjct 377 LNGFR-QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAI 435
Query 739 FLLTSN 744
+ TS+
Sbjct 436 LMFTSS 441
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=rrp3 PE=3 SV=1
Length=467
Score = 37.0 bits (84), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (46%), Gaps = 14/114 (12%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F +T + +L+FL + G G + ++ A+ L F+A
Sbjct 291 TIIFTRT----------VNETQRLAFLLRAL--GFGAIPLHGQLSQSARLGALGKFRAR- 337
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
NIL+AT VA G+DI ++V+ ++ G+ + GR AR K L S
Sbjct 338 SRNILVATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGR-TARAGKSGLAIS 390
>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508
GN=PRP28 PE=3 SV=1
Length=597
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 14/128 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ +L L ++Q N + I+F + + D L +E N L+ + G K
Sbjct 441 ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNNLLNVVIHG-----SK 495
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ + A++ L+ F+ + IL+AT VA GID+ +LVI Y+ + I
Sbjct 496 SQE-------AREEALEDFR-THQAPILVATDVAARGIDVPNVSLVINYQMSKKFDEYIH 547
Query 727 TRGR-GRA 733
GR GRA
Sbjct 548 RIGRTGRA 555
>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484
Score = 37.0 bits (84), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (54%), Gaps = 6/65 (9%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSK 737
L+ FK SG NILIAT VA G+DI ++VI Y+ + + GR GR+ G
Sbjct 353 LNKFK-SGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRS-GKS 410
Query 738 CFLLT 742
L+T
Sbjct 411 ISLVT 415
>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408
Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (52%), Gaps = 1/60 (2%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
+ I++ F+ SGD +LI T V GID+ Q +LVI Y+ N I GR G K
Sbjct 313 RDAIMNEFR-SGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 371
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (40%), Gaps = 6/163 (4%)
Query 216 DPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL 275
+P C C P + + KP Q + ++G + I A TG GKT L
Sbjct 238 NPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297
Query 276 LICEHHLKKFP--QGQKGKVVFFANQIPVYEQQKSVFSK--YFERHGYRVTGISGATAEN 331
+ HL P +GQ+ + P E V + + G R + G +
Sbjct 298 MPGFIHLVLQPSLKGQRNRPGMLV-LTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRD 356
Query 332 VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+E++ + DIII TP L N+L+ +L T ++ DE
Sbjct 357 EQIEELKKGVDIIIATPGRL-NDLQMSNFVNLKNITYLVLDEA 398
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/77 (34%), Positives = 39/77 (51%), Gaps = 4/77 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L+ FK +G ILIAT +A G+D+ V +++ N+ + + GR GRA G
Sbjct 530 LENFK-TGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSI 588
Query 739 FLLTSNAGVIEKEQINM 755
LT N + E IN+
Sbjct 589 TTLTRNDWRVASELINI 605
>sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP9 PE=3
SV=1
Length=625
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/140 (26%), Positives = 60/140 (43%), Gaps = 9/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQI 300
KP Q E A+ GK+ + A TG GKT LL + + L++ K + +
Sbjct 46 KPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKRNTPAHKSISALILV 105
Query 301 PVYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
P E + V FS + +H R ++ ++ V + + DI++ TP V N
Sbjct 106 PTRELAEQVHRTAISFSAFSGKH-VRSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVAN 164
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+ + SL T ++ DE
Sbjct 165 VNSSAL-SLERLTHLVIDEA 183
>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 68/286 (24%), Positives = 111/286 (39%), Gaps = 58/286 (20%)
Query 502 REFGTQKYEQWIVTVQKA----CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
RE +Q Y+ ++ QK C+V+ KD++ R + K N ++++
Sbjct 209 RELASQIYDNLVLLTQKVGIDCCVVYGGVPKDDQRR----------QIAKSN--VVVATP 256
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN-------PK 610
R+ D ++ S V DE ++ L + FEE ++ + ++ + PK
Sbjct 257 GRLLDLIEEGSVDLSPVDYMVLDEADRMLEKGFEEDIKRIIGQTKSKDRQTLMFTATWPK 316
Query 611 -LEDLCFIL-----------QEEYHLNPETITILFV-----KTRALVDALKNWIEGNPK- 652
+ +L ++E N I+ V K R L+D LK + G K
Sbjct 317 EVRELASTFMKEPVKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKN 376
Query 653 ---LSFLKPGILTGRGKTNQN-TGMTLPA---------QKCILDAFKASGDHNILIATSV 699
L F R + N N G + A + L+ FK SG N+L+AT V
Sbjct 377 DKVLIFALYKKEASRVERNLNYNGYKVAAIHGDLSQQQRTQALNEFK-SGKSNLLLATDV 435
Query 700 ADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLT 742
A G+DI VI + V + + I GR G+ L T
Sbjct 436 AARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFT 481
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 56/123 (46%), Gaps = 7/123 (6%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ I A TG GKTF + ++L KG V + P E ++
Sbjct 163 LSGKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVIS--PTRELASQIYDNLV 220
Query 315 ---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
++ G + G ++ QI ++N +++ TP L++ +++G++ LS M+
Sbjct 221 LLTQKVGIDCCVVYGGVPKDDQRRQIAKSN-VVVATPGRLLDLIEEGSV-DLSPVDYMVL 278
Query 372 DEC 374
DE
Sbjct 279 DEA 281
>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
OX=510516 GN=prp5 PE=3 SV=1
Length=1186
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 37/68 (54%), Gaps = 4/68 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGS 736
++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++ + GR GRA G+
Sbjct 847 STIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT 905
Query 737 KCFLLTSN 744
LT +
Sbjct 906 AVTFLTED 913
>sp|Q2LWA6|MNMA1_SYNAS tRNA-specific 2-thiouridylase MnmA 1 OS=Syntrophus
aciditrophicus (strain SB) OX=56780 GN=mnmA1 PE=3
SV=1
Length=372
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (5%)
Query 560 MKDALDYLKD---FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+K A D +KD F + A + I L R +++++E+ + P E P+ +DLCF
Sbjct 156 LKKAKDLVKDQTYFLYPIPVAALEHILFPLADRTKDEVREIARQALLPIAEKPESQDLCF 215
Query 617 ILQEEY 622
+ Q+ Y
Sbjct 216 VTQDSY 221
>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/108 (31%), Positives = 53/108 (49%), Gaps = 18/108 (17%)
Query 629 ITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+TI+F +T+ + D L +++ +G P + G +Q ++ L AFK
Sbjct 427 LTIIFTETKRMADNLADFLYDQGFPATAI--------HGDRSQYE------REKALAAFK 472
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
SG IL+AT+VA G+DI VI Y+ ++ + GR GRA
Sbjct 473 -SGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIGRTGRA 519
>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 37/68 (54%), Gaps = 4/68 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGS 736
++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++ + GR GRA G+
Sbjct 840 STIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT 898
Query 737 KCFLLTSN 744
LT +
Sbjct 899 AVTFLTED 906
>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/80 (34%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query 670 NTGMTLPAQKCILDAFKAS-------GDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
++GM A+ +D FKA+ G IL+AT VA G+DI +LVI Y
Sbjct 551 HSGMIQQARLRSIDRFKANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAE 610
Query 723 KMIQTRGR-GRARGSKCFLL 741
+ GR RA S +L
Sbjct 611 DYVHRSGRTARASNSGTSIL 630
>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3
SV=2
Length=561
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (53%), Gaps = 6/70 (9%)
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GR 732
A+ L+ FK +G +IL+AT VA G+DI +LV+ Y+ N I GR GR
Sbjct 391 ARLGALNKFK-TGGRSILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVGRTARAGR 449
Query 733 ARGSKCFLLT 742
+ G L+T
Sbjct 450 S-GRSVTLVT 458
>sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides
burtonii (strain DSM 6242 / NBRC 107633 / OCM
468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1
Length=760
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (45%), Gaps = 26/197 (13%)
Query 234 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
D+ + + P+ +E+ L ++ KN + PT GKT ++ L +K +G GK
Sbjct 18 DSGIKELYPPQAEAIEMGL--LEKKNLLAAIPTASGKTLLAELAM---IKAIREG--GKA 70
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVENNDIIILTPQILV 352
++ +P+ F ++ E + + GIS T + + NDII+ T +
Sbjct 71 LYI---VPLRALASEKFERFKELAPFGIKVGIS--TGDLDSRADWLGVNDIIVATSEKTD 125
Query 353 NNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
+ L+ GT + T ++ DE H ++ + P + L +L P QV+ L+A
Sbjct 126 SLLRNGT-SWMDEITTVVVDEIHLLDSKNRGPTLEVTITKL-MRL----NPDVQVVALSA 179
Query 411 SVGVGDAKNTDEALDYI 427
+VG N E D++
Sbjct 180 TVG-----NAREMADWL 191
>sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune
OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2
Length=680
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (46%), Gaps = 4/107 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQIPVYEQQKSV 309
P +KG++ + A TG GKT L+ + K P+ G V+ + + Q V
Sbjct 220 PLLKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTG-VIIISPTRELSMQTFGV 278
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ H + + G + V E++ + +I++ TP L+++L+
Sbjct 279 LKELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQ 325
>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3
PE=3 SV=1
Length=498
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (33%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
LDAFK +G +L+AT VA G+DI VI + V + + I GR A G
Sbjct 376 LDAFK-TGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAV 434
Query 739 FLLTSNAGVIEKEQINMYK 757
L T IN+ +
Sbjct 435 TLFTETDKAQSGALINVLR 453
>sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp5 PE=3 SV=2
Length=489
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (18%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQ 669
ED L + Y L +I+FV+TRA ++ + EG+ +S
Sbjct 306 EDKYRTLVQLYGLLTVGSSIIFVQTRAAAQEIERRMTAEGHTVVSL-------------- 351
Query 670 NTGMTLPA-QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
TG P+ + I+D F+ G+ +LIAT+V GID++ ++VI Y+
Sbjct 352 -TGERDPSVRDAIIDQFR-RGEAKVLIATNVLARGIDVSTVSMVINYD 397
>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173
Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (37%), Positives = 37/68 (54%), Gaps = 4/68 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGS 736
++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++ + GR GRA G+
Sbjct 834 STIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGT 892
Query 737 KCFLLTSN 744
LT +
Sbjct 893 AVTFLTED 900
>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3
SV=2
Length=534
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (57%), Gaps = 2/53 (4%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
LD+FK GD N+L+AT VA G+DI +VI + V + GR GRA
Sbjct 413 LDSFK-RGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRA 464
>sp|D3Z4R1|HFM1_MOUSE Probable ATP-dependent DNA helicase HFM1
OS=Mus musculus OX=10090 GN=Hfm1 PE=3 SV=2
Length=1434
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query 236 NLYSPFKPRNYQLELALPAM--KGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGK 292
N++ F NY A + +N +ICAPTG GKT V L L + P K
Sbjct 272 NIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNMK 331
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+V+ A + Q+ + + F G ++G T + E +++ +III TP+
Sbjct 332 IVYMAPIKALCSQRFDDWKEKFGPVGLNCKELTGDTVMDDLFE--IQHANIIITTPEKWD 389
Query 353 NNLKKGTIPS-LSIFTLMIFDECH 375
+ +K S + + L + DE H
Sbjct 390 SVTRKWRDNSFIQLVRLFLIDEVH 413
>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 22/144 (15%)
Query 576 AAGFDEIEQDLTQRFEE-KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFV 634
AA F +LT + EE ++ ++ + D S+E ED L + Y L +I+FV
Sbjct 273 AAKFAPNANELTLQHEELTVEGIKQLYLDCSDE----EDKYKTLVQLYGLLTVGSSIIFV 328
Query 635 KTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
+TR ++ + EG+ S LTG G+ + + I+D F+ SG+
Sbjct 329 QTRTSASEIEKRMVAEGHTVAS------LTG--------GIDVTKRDEIIDKFR-SGEAK 373
Query 693 ILIATSVADEGIDIAQCNLVILYE 716
+LI T+V GID++ ++VI Y+
Sbjct 374 VLITTNVLARGIDVSTVSMVINYD 397
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (31%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G G + G++ A+ L+ F+A G +IL+AT VA G+DI + V+ + G+
Sbjct 329 GMGAIPLHGGLSQSARLGALNKFRA-GSRDILVATDVAARGLDIPNVDCVLNLDLPGDSK 387
Query 723 KMIQTRGR 730
+ GR
Sbjct 388 TYVHRVGR 395
>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28
PE=3 SV=2
Length=820
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 13/87 (15%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTS 743
+G+ ++L+AT +A GID+ +LV+ + N+ GR GRA S FL
Sbjct 703 NGNTDVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGNE 762
Query 744 NAGVIEKEQINMY--KEKMMNDSILRL 768
+A V MY K+ +M SI R+
Sbjct 763 DADV-------MYDLKQMLMKSSISRV 782
>sp|A2QZ71|MRH4_ASPNC ATP-dependent RNA helicase mrh4, mitochondrial
OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88
/ FGSC A1513) OX=425011 GN=mrh4 PE=3 SV=2
Length=633
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (30%), Positives = 37/87 (43%), Gaps = 5/87 (6%)
Query 660 ILTGRGKTNQNTGM--TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
I+ + K Q+ + P Q+ A + + +L+ T +A GID VILY
Sbjct 524 IMLAKNKRRQDNSIPFVFPEQQNKPGAERGLPNTKVLVTTDIASRGIDTIAVKTVILYHV 583
Query 718 VGNVIKMIQTRGR-GRA--RGSKCFLL 741
N I I GR GR RG L+
Sbjct 584 PHNTIDFIHRLGRLGRMGKRGRAVVLV 610
>sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5
PE=3 SV=1
Length=489
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 53/108 (49%), Gaps = 19/108 (18%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQ 669
ED L + Y L +I+FV+TRA ++ + EG+ +S
Sbjct 306 EDKYKTLVQLYGLLTVGSSIIFVQTRAAAQEIEKRMTAEGHTVVSL-------------- 351
Query 670 NTGMTLPA-QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
TG P+ + I+D F+ G+ +LIAT+V GID++ ++VI Y+
Sbjct 352 -TGERDPSVRDAIIDQFR-RGEAKVLIATNVLARGIDVSTVSMVINYD 397
>sp|Q38861|XPB1_ARATH General transcription and DNA repair factor
IIH helicase subunit XPB1 OS=Arabidopsis thaliana OX=3702
GN=XPB1 PE=2 SV=3
Length=767
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/57 (39%), Positives = 33/57 (58%), Gaps = 2/57 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVI-LYEYVGNVIKMIQTRGR-GRARG 735
IL+AFK S D N + + V D IDI + N++I + + G+ + Q GR RA+G
Sbjct 561 ILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 617
>sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1
Length=744
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-- 730
++ P + L +F A ++LI T V+ G+DI +LVI Y+ + I GR
Sbjct 500 LSQPIRTATLKSFSACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHRVGRTA 559
Query 731 --GRARGSKCFLL-TSNAGVIEKEQINMYKEKMMNDSILR 767
G+ + FLL + G IE + + DSIL+
Sbjct 560 RAGKPGDALLFLLPGTEEGYIELMKGSTTPTSQSYDSILQ 599
>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E+ K + LC + Y T ++F TR VD L +
Sbjct 229 LVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 284
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + + M + I+ F+ G+ +LI+T V GI
Sbjct 285 KMREANFTVS-------------SMHGDMPQKERDSIMQDFR-QGNSRVLISTDVWARGI 330
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 331 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 363
>sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129
/ Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1
Length=450
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (52%), Gaps = 3/114 (3%)
Query 249 ELALPA-MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
+LA+P ++ +N I+ +PTG GKT V + + E LKK +G +V A + EQ
Sbjct 31 QLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLV-VAPTRELAEQI 89
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
K+ F + + +V + G ++Q+ +I++ T +++ L++G I
Sbjct 90 KTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLLERGVI 143
>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/133 (26%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query 631 ILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
I+F T+ + D L ++ +G P L+ G Q + +L FK S
Sbjct 380 IIFTSTKRVADDLTKFLRQDGWPALAI--------HGDKQQQE------RDWVLAEFK-S 424
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT+VA G+D+ + VI Y++ N + I GR G+ T
Sbjct 425 GRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPEN 484
Query 746 GVIEKEQINMYKE 758
+E I + +E
Sbjct 485 SKSARELIGILRE 497
>sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus
musculus OX=10090 GN=Ddx18 PE=1 SV=1
Length=660
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/109 (25%), Positives = 52/109 (48%), Gaps = 8/109 (7%)
Query 253 PAMKGKNTIICAPTGCGKTFVSL-----LICEHHLKKFPQGQKGKVVFFANQIPVYEQQK 307
P ++G++ + A TG GKT L LI + LK P+ G V+ + + Q
Sbjct 202 PLLEGRDLLAAAKTGSGKTLAFLIPVIELIVK--LKFMPRNGTG-VLILSPTRELAMQTF 258
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
V + H + I G + + V++++ +II+ TP L+++++
Sbjct 259 GVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATPGRLLDHMQ 307
>sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2
SV=2
Length=773
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 6/129 (5%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKK---FPQGQKGKVVFFANQIPVYEQQ 306
ALP A+ G++ + A TG GKT ++ L + P+ G +V N+ + Q
Sbjct 110 ALPHALCGRDVLGAAKTGSGKTLAFVIPVLEKLYRERWGPEDGVGCIVLSPNK-DLAGQI 168
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS-I 365
+VF K + HG+ I G + ++ N +I++ TP L+ ++ + T S I
Sbjct 169 FNVFQKVGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGRLLQHMGETTNFDCSQI 228
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 229 QQILVIDEA 237
>sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP5 PE=3 SV=1
Length=471
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/97 (30%), Positives = 50/97 (52%), Gaps = 17/97 (18%)
Query 622 YHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
Y L + +I+FV+TR + L+ + EG+ K++ L G L G+ +
Sbjct 298 YGLMTQASSIIFVRTRRTAEELERRMVAEGH-KVAQLS-GALEGQDRDR----------- 344
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
++D F+ SG+ +LI T+V GID+ +VI Y+
Sbjct 345 -VIDQFR-SGEAKVLITTNVLARGIDVESVTMVINYD 379
>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1
PE=1 SV=1
Length=564
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 14/142 (10%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVF----F 296
P Q E A+ ++ + C PTG GKT L+ + K G KG ++
Sbjct 145 PTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKEL 204
Query 297 ANQIPVYEQQKSVFSKYFE-RHGYRVTGIS---GATAENVPVEQIVENNDIIILTPQILV 352
ANQI + E K + + E + +V +S GA +N V + DIII TP L+
Sbjct 205 ANQIFI-ECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSD--KKYDIIISTPLRLI 261
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +K + LS +IFDE
Sbjct 262 DVVKNEAL-DLSKVKHLIFDEA 282
>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2
SV=2
Length=602
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (46%), Gaps = 21/124 (17%)
Query 627 ETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ +T++FV+T+ D+L+ W+ +G P + G Q ++ L +
Sbjct 351 QPLTLVFVETKREADSLRYWLYSKGFPATAI--------HGDRTQQE------RESALRS 396
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSKCFL 740
FK +G I++AT VA G+D+ VI Y+ ++ + GR G+A + F
Sbjct 397 FK-TGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFF 455
Query 741 LTSN 744
S+
Sbjct 456 TESD 459
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (41%), Gaps = 18/150 (12%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKT------FVSLLICE-----HHLKKFP- 286
SP + Y + +AL G++ + CA TG GKT VS L+ H ++
Sbjct 106 SPTPVQRYSMPIAL---AGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSF 162
Query 287 --QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + A + Q K+ + G RV G T + + DI+
Sbjct 163 NRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADIL 222
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP LV+ +++ + SL ++ DE
Sbjct 223 VATPGRLVDMVERSKV-SLEAIKYLVMDEA 251
>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 70/274 (26%), Positives = 106/274 (39%), Gaps = 76/274 (28%)
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH-ARMKDALDYLKDFFSNVRAA 577
A +F DK+E+ + L K N II+ R+KD L +NV A
Sbjct 288 AVCIFGGSDKNEQRNL----------LYKNNGVDIITATPGRLKDFLSEGSISLANVSFA 337
Query 578 GFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI---------LQEEYHLNPET 628
DE ++ L + F E ++ + +S P E + + L F L E Y +NP
Sbjct 338 VLDEADRMLDRGFSEDIKLI--LSGCPPKE--QRQTLMFTATWPLDIQKLAESYMINPAQ 393
Query 629 ITILFVKTRALVDALKNW---IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK------ 679
+TI +TRA D N ++ N ++ K ++ RGK + + AQK
Sbjct 394 VTIGH-RTRAGGDGEGNGNIELQANSRIE-QKVEVVDPRGKEFRLYELLKEAQKGSQKDD 451
Query 680 -----CI----------------------------------LDAFKASGDHNILIATSVA 700
C+ L+AFK SG +L+AT VA
Sbjct 452 RILVFCLYKKEAVRVEQFLSRKGIKVASIHGDLRQDQRTRSLEAFK-SGTTTVLVATDVA 510
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
G+DI + LVI + + + GR GRA
Sbjct 511 ARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRA 544
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2
SV=2
Length=602
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/66 (38%), Positives = 34/66 (52%), Gaps = 4/66 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKC 738
L F+ G NIL+AT VA G+DI +LVI YE + GR RA +GS
Sbjct 370 LSGFR-DGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAI 428
Query 739 FLLTSN 744
+ T++
Sbjct 429 LIYTND 434
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/123 (24%), Positives = 55/123 (45%), Gaps = 2/123 (2%)
Query 253 PAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
PAM+GK+ I A TG GKT + I + L+ + G+ P E + V
Sbjct 117 PAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEK 176
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
++ E + G + + + D+++ TP +++ L++G + +LS ++
Sbjct 177 EFKESAPLDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVL-NLSEIQFVVL 235
Query 372 DEC 374
DE
Sbjct 236 DEA 238
>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase
29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1
Length=845
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 10/147 (7%)
Query 236 NLYSPFKPRNYQLEL-----ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKK-FPQG 288
N+++ K + Y++ +P + G + + A TG GKT L+ LK+ PQG
Sbjct 38 NVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQG 97
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILT 347
G + +Q F+K + RV+ + G + E++ + D+II T
Sbjct 98 --GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIAT 155
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P L++ L + +L ++FDE
Sbjct 156 PGRLMHLLSEVDDMTLRTVEYVVFDEA 182
>sp|D0MYB4|EF3_PHYIT Elongation factor 3 OS=Phytophthora infestans
(strain T30-4) OX=403677 GN=TEF3 PE=1 SV=1
Length=1038
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 0/54 (0%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+G +C P GCGK+ + I L+ FP + K VF + + E + SV
Sbjct 464 RGHRYGLCGPNGCGKSTLMRAISNGQLEGFPSRDELKTVFVEHNLQASEAELSV 517
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (41%), Positives = 31/54 (57%), Gaps = 2/54 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+L+ F+ SG +LIAT VA G+DI +VI Y++ V + GR GRA
Sbjct 721 VLNQFR-SGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRA 773
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700
PE=2 SV=2
Length=758
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCF 739
L+ F+ G +L+AT VA G+DI +L+I YE + + GR GRA +
Sbjct 393 LNGFR-QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAI 451
Query 740 LLTSNA 745
L+ +N+
Sbjct 452 LMFTNS 457
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/136 (23%), Positives = 61/136 (45%), Gaps = 13/136 (10%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF------VSLLICEHHLKKFPQGQKGKVVFFANQI 300
Q + +PA+ G++ I A TG GKT + L+ E + +G+ +V+ A
Sbjct 131 QRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLA--- 187
Query 301 PVYEQQKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
P E K V K + +++ + G + NV + D+++ TP +++ + G
Sbjct 188 PTRELAKQV-EKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGG 246
Query 359 TIPSLSIFTLMIFDEC 374
++ L ++ DE
Sbjct 247 SL-QLGEVKYLVLDEA 261
>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 /
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3
SV=2
Length=875
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 6/130 (5%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQ 306
ALPA M G++ I A TG GKT +L H++ P + G+ P E Q
Sbjct 303 ALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTRELAVQI 362
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPSLS 364
+ + +R G G + + ++ + I++ TP ++ L G I +L
Sbjct 363 HKEITNFTKRLGMTACCCYGGSPIESQIAELKKGAQILVGTPGRIIELLAANSGRITNLR 422
Query 365 IFTLMIFDEC 374
T ++ DE
Sbjct 423 RVTYVVLDEA 432
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (59%), Gaps = 3/56 (5%)
Query 692 NILIATSVADEGIDIAQCNLVILYE---YVGNVIKMIQTRGRGRARGSKCFLLTSN 744
+ILIATS+A G+D+ +LVI Y+ ++ + + + GR +G+ ++S+
Sbjct 584 DILIATSIAARGLDVKGLDLVINYDPPNHMEDYVHRVGRTGRAGMKGTAITFVSSD 639
>sp|Q3ANE6|SYK_SYNSC Lysine--tRNA ligase OS=Synechococcus sp.
(strain CC9605) OX=110662 GN=lysS PE=3 SV=1
Length=502
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (36%), Positives = 33/59 (56%), Gaps = 2/59 (3%)
Query 56 LFL-KFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIE-KLEEYRLLLKRLQP 112
LFL K LE Q+EGWF+ +D + G+ + D ++ K+ ++R+L K LQP
Sbjct 82 LFLEKAGLEAQQEGWFKQITSLVDSGDWLGVSGTLRRTDRGELSVKVSDWRMLTKALQP 140
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D
OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3
Length=687
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (53%), Gaps = 5/78 (6%)
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG 746
A+G N LI + GID+A ++V+ YE ++ I GR G K +T
Sbjct 495 AAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVT---- 550
Query 747 VIEKEQINMYKEKMMNDS 764
V+ ++ + ++K K+++D+
Sbjct 551 VLTEQDMTLFK-KILSDA 567
>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=1
Length=592
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/94 (32%), Positives = 44/94 (47%), Gaps = 6/94 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+AFK SG+ +L+AT VA G+DI LVI + V + + I GR G
Sbjct 471 LEAFK-SGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAI 529
Query 739 FLLTSNAGVIEKEQINMYK--EKMMNDSILRLQT 770
L T + IN+ K + + D +L+ T
Sbjct 530 TLFTEHDKAQSGALINVLKAANQPVPDELLKFGT 563
>sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis
thaliana OX=3702 GN=RH27 PE=2 SV=2
Length=633
Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 60/233 (26%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQEL-------ESVSRD 603
L+++ R+ D L+ F F N++ DE ++ L Q FEE L+++ S
Sbjct 279 LLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLF 338
Query 604 PSNENPKLEDLCFI---------------------LQEEYHLNPETITILFVKTRALVDA 642
+ ++ K+EDL + L++ Y + P + +LF L+
Sbjct 339 SATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLF-----LLTF 393
Query 643 LKNWIEGNPKL-----------------SFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
LK + +G K+ ++K L RG +QN L
Sbjct 394 LKRF-QGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNK-----RTPTFLQFI 447
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
KA + IL+ T+VA G+D + ++ Y+ N I GR R G+K
Sbjct 448 KA--ETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAK 498
>sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3
SV=1
Length=488
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/101 (26%), Positives = 52/101 (51%), Gaps = 15/101 (15%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSFLKPGILTGRGKTNQNTGMTL 675
+L+E Y + +++FV R+ +AL + N K+S L ++ +++
Sbjct 326 MLEELYSMLTIASSVIFVAQRSTANALYQRMSKNGHKVSLL-------------HSDLSV 372
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ ++D F+ G +LI+T+V GIDIA ++V+ Y+
Sbjct 373 DERDRLMDDFRF-GRSKVLISTNVIARGIDIATVSMVVNYD 412
>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1
Length=564
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/143 (29%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVF----F 296
P Q E A+ ++ + C PTG GKT L+ + K G KG ++
Sbjct 145 PTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKEL 204
Query 297 ANQIPV--YEQQKSVFSKYFERHGYRVTGIS---GATAENVPVEQIVENNDIIILTPQIL 351
ANQI + ++ +F + ++ +V +S GA +N V + DIII TP L
Sbjct 205 ANQIFIECFKLSHKIFLE--KKRPLQVALLSKSLGAKLKNKVVSD--KKYDIIISTPLRL 260
Query 352 VNNLKKGTIPSLSIFTLMIFDEC 374
++ +K + LS +IFDE
Sbjct 261 IDVVKNEAL-DLSKVKHLIFDEA 282
>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E+ K + LC + Y T ++F TR VD L +
Sbjct 228 LVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 283
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + + M + I+ F+ G+ +LI+T V GI
Sbjct 284 KMREANFTVS-------------SMHGDMPQKERDSIMQDFR-QGNSRVLISTDVWARGI 329
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 330 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 362
>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=RRP3 PE=3 SV=1
Length=538
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (50%), Gaps = 11/113 (10%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L+ FKA +IL+AT VA G+DI + +LVI ++ + + I GR AR +
Sbjct 393 LNKFKAR-SRDILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGR-TARAGRSGRA 450
Query 742 TSNAGVIEKEQINMY---KEKMMNDSILRLQTWDE---AVFREKILHIQTHEK 788
S +I + + ++ ++ +N L L D+ VF+E++ Q H +
Sbjct 451 IS---IITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQRHAR 500
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (34%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
P + +L+ F+ SG +L+AT VA G+D+ V+ Y++ V + GR GRA
Sbjct 439 PERDNVLNQFR-SGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRA 496
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (2%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
L FKA G ILIAT VA G+DI LV+ Y+ + I GR G K
Sbjct 296 LHRFKA-GAAKILIATDVASRGLDIPTVELVVNYDIPADADDFIHRVGRTARAGRK 350
>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1
PE=3 SV=1
Length=613
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/133 (28%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query 254 AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQ---IPVYEQQKSV 309
A+ GK+ + A TG GKT ++ I E L K P ++ + + VYE
Sbjct 164 ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYK-PSTSTKVIILTPTRELALQVYE----- 217
Query 310 FSKYFERH------GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
F K H G V G++ E EQ+ DI+I TP L+++++ PS
Sbjct 218 FGKKLSHHVNNLNIGLAVGGLNLRQQE----EQLKTRPDIVIATPGRLIDHIRNS--PSF 271
Query 364 SI--FTLMIFDEC 374
S+ +++ DE
Sbjct 272 SVQDIQVLVIDEA 284
>sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp9 PE=3 SV=1
Length=621
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/131 (27%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIP---VYEQ 305
A+P A++GK+ + A TG GKT +L I + L+K K +P + EQ
Sbjct 57 AIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQ 116
Query 306 QKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
+SV +K+ F R ++ ++ V + + D+I+ TP ++ NL + +L
Sbjct 117 VQSVITKFTAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGSSAL-AL 175
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 176 DNLTHLVIDEA 186
>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 51/111 (46%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL + G+ Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLIARDFTVSAMHGEMEQ 300
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
N + I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 NQ------RDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E+ K + LC + Y T ++F TR VD L +
Sbjct 229 LVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 284
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + + M + I+ F+ G+ +LI+T V GI
Sbjct 285 KMREANFTVS-------------SMHGDMPQKERDSIMQDFR-QGNSRVLISTDVWARGI 330
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 331 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 363
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/128 (27%), Positives = 61/128 (48%), Gaps = 14/128 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E K L +L E Y+ + T++FV + DAL + + K + I G+ +
Sbjct 648 EESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLM---KRGYTSNSIHGGKDQ 704
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++++ ++ +KA G ++LIATSV G+D+ LV+ Y+ ++ +
Sbjct 705 HDRDSTIS---------DYKA-GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
Query 727 TRGR-GRA 733
GR GRA
Sbjct 755 RVGRTGRA 762
Score = 33.9 bits (76), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/139 (24%), Positives = 58/139 (42%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP + Q + A+PA+ G++ I A TG GKT LL H+K + G+
Sbjct 440 KPTSIQAQ-AIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMT 498
Query 301 PVYEQQKSVFSK---YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 355
P E +F + + + R G + + +I++ TP +++ L
Sbjct 499 PTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSA 558
Query 356 KKGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 559 NAGRVTNLHRCTYLVLDEA 577
>sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590
GN=PRP5 PE=3 SV=1
Length=812
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 11/133 (8%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVY 303
A+PA M G++ I + TG GKT LL +K P G G ++ ++ V
Sbjct 276 AIPAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQ 335
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN--NLKKGTIP 361
Q++++ K+ + G G + + ++ DII+ TP ++ L G +
Sbjct 336 IQEEAL--KFCKGSGISSICCVGGSELKQQINELKRGVDIIVATPGRFIDLMTLNSGHLL 393
Query 362 SLSIFTLMIFDEC 374
S + + ++ DE
Sbjct 394 SPTRISFVVMDEA 406
Score = 35.8 bits (81), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 18/121 (15%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI- 681
H + TI+FV ++ L D L + + N +F I G+ P+ + +
Sbjct 496 HRGEDEKTIIFVGSQQLCDLLYDELLLNGITTF---PIHAGK-----------PSAERLR 541
Query 682 -LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCF 739
L FK + D+ ILI T V G+++ + +LVI+Y + + + T GR GR +
Sbjct 542 NLQKFKET-DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHTVGRTGRGTNNGVA 600
Query 740 L 740
L
Sbjct 601 L 601
>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia
bellii (strain RML369-C) OX=336407 GN=mfd PE=3 SV=1
Length=1120
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY-VGNVIKMIQTR---GRGRARGS 736
I+ F A G +ILI+T++ + GIDI N +I+++ + + ++ Q R GRG+ RG
Sbjct 833 IMSEFYA-GKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGRGKMRGY 891
Query 737 KCFLLTSN 744
L S+
Sbjct 892 AYLTLPSH 899
>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=deaD PE=3 SV=1
Length=613
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
N MT ++ LD + +G +I++AT VA GIDI + +LV+ Y+ + + G
Sbjct 275 NGDMTQQLREQTLDRLR-NGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIG 333
Query 730 R-GRARGSKCFLL 741
R GRA S LL
Sbjct 334 RTGRAGRSGRALL 346
>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp3 PE=3 SV=2
Length=596
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/94 (32%), Positives = 44/94 (47%), Gaps = 6/94 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+AFK SG+ +L+AT VA G+DI LVI + V + + I GR G
Sbjct 475 LEAFK-SGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAI 533
Query 739 FLLTSNAGVIEKEQINMYK--EKMMNDSILRLQT 770
L T + IN+ K + + D +L+ T
Sbjct 534 TLFTEHDKAQSGALINVLKAANQPVPDELLKFGT 567
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFV---SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
AM G++ I A TG GKT +LI K+ G V + +Q S
Sbjct 287 AMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSEC 346
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++ + + R + G + + + E +I++ TP L++++KK +L T ++
Sbjct 347 KRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT-NLQRVTYLV 405
Query 371 FDEC 374
FDE
Sbjct 406 FDEA 409
>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648
GN=prp28 PE=3 SV=1
Length=783
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
SG N+L+AT +A GID+ +LV+ + N+ GR GRA
Sbjct 701 SGATNVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRA 747
>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
OX=237561 GN=PRP28 PE=3 SV=2
Length=581
Score = 35.8 bits (81), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+LIAT VA GIDI LVI Y+ V + I GR GRA
Sbjct 494 VLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRA 535
>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926
GN=rhlB PE=3 SV=1
Length=437
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/136 (31%), Positives = 66/136 (49%), Gaps = 23/136 (17%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
PSNE+ K+ L +++EE+ P+ I+F T+ +++ W G+ + G+LTG
Sbjct 238 PSNED-KMALLQTLIEEEW---PDR-AIVFANTKHKCESV--W--GHLAADGHRVGLLTG 288
Query 664 RGKTNQNTGMTLPAQKC--ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
+P +K IL+ F GD +IL+AT VA G+ I Q V Y+ +
Sbjct 289 ----------DVPQKKREKILEQF-TKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDC 337
Query 722 IKMIQTRGR-GRARGS 736
+ GR GRA S
Sbjct 338 EDYVHRIGRTGRAGAS 353
>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100
PE=3 SV=2
Length=590
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/130 (24%), Positives = 55/130 (42%), Gaps = 14/130 (11%)
Query 253 PAMKGKNTIICAPTGCGKTFVSL-----LICEHHLKKFPQGQKGKVVFFANQ---IPVYE 304
P M G + + A TG GKT L L+C L+ P+ G +V + I +
Sbjct 119 PLMLGSDVMASAKTGSGKTLAFLIPAIELLCR--LRFSPRNGTGVIVLCPTRELAIQTHN 176
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
K + + + GY + GI EQ+ + ++++ TP L+++++K
Sbjct 177 VAKELMRYHSQTLGYVIGGIDLRGE----AEQLAKGINVLVATPGRLLDHMQKTKSFKYE 232
Query 365 IFTLMIFDEC 374
+I DE
Sbjct 233 CLKCLIIDEA 242
>sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=ROK1 PE=3 SV=1
Length=775
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++ M A+ ++ F+A+ D +LI T V G+D A N V+ Y+ G+ + G
Sbjct 587 HSSMPESARAAVIRRFRAA-DVWVLITTDVLARGVDFAGVNGVVNYDVPGSAAAYVHRAG 645
Query 730 R-GRA 733
R GRA
Sbjct 646 RTGRA 650
>sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5
PE=3 SV=1
Length=487
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 48/220 (22%)
Query 576 AAGFDEIEQDLTQRFEE-KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFV 634
A+ F +LT + EE ++ ++ + D S+E K L + Y L +I+FV
Sbjct 274 ASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYRTLVSL----YGLLTVGSSIIFV 329
Query 635 KTR--ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
KTR A+ + EG+ S LTG G+ + ++D F+A G
Sbjct 330 KTRQSAMEIEKRMVAEGHTVAS------LTG--------GIEGSQRDAVIDQFRA-GAAK 374
Query 693 ILIATSVADEGIDIAQCNLVILYEY--------------VGNVIKMIQTRGR-GRARGSK 737
+LI T+V GID++ ++VI Y+ + I GR GR S
Sbjct 375 VLITTNVLARGIDVSTVSMVINYDIPELHLPPNQPRQADFQTYLHRIGRTGRFGRVGVSI 434
Query 738 CFLLTSNAGVIEKEQINMYK--EKMMNDSILRLQT--WDE 773
F V +++ NM +K N SI R+ T WDE
Sbjct 435 SF-------VSNRDEWNMLNQIQKYFNTSIQRIDTKDWDE 467
>sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp5 PE=3 SV=1
Length=477
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/107 (32%), Positives = 52/107 (49%), Gaps = 17/107 (16%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQ 669
ED L + Y L +I+FVKTRA ++ + EG+ S LTG
Sbjct 298 EDKYRTLVQLYGLLTVGSSIIFVKTRASAVEIERRMVAEGHTVAS------LTG------ 345
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
G+ + I+D F+A G +LI T+V GID++ ++VI Y+
Sbjct 346 --GIEGSQRDQIIDQFRA-GHAKVLITTNVLARGIDVSTVSMVINYD 389
>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=FAL1 PE=3 SV=1
Length=401
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E+ K + LC + Y T ++F TR VD L +
Sbjct 229 LVKRDELTLEGLKQYFIAIEKEDWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 284
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + + M + I+ F+ G+ +LI+T V GI
Sbjct 285 KMREANFTVS-------------SMHGDMPQKERDSIMQDFR-QGNSRVLISTDVWARGI 330
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 331 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 363
>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1
Length=494
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/159 (23%), Positives = 67/159 (42%), Gaps = 19/159 (12%)
Query 204 METSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIIC 263
+E+SD+ ++ NLS+ + E + +P + R P M G++ +
Sbjct 22 VESSDVDHSFK----SLNLSQPTMRAIEKMGFSKMTPVQARTIP-----PLMAGRDVLGA 72
Query 264 APTGCGKTFVSLLIC---EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS---KYFERH 317
A TG GKT LL H LK P+ G ++ P E +F + E H
Sbjct 73 AKTGSGKTLAFLLPTIELLHSLKFKPRNGTGVIII----TPTRELALQIFGVVRELMEFH 128
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ G E++++ ++++ TP L+++L+
Sbjct 129 SQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQ 167
>sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3
SV=1
Length=411
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (44%), Gaps = 17/135 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ ++ E+ KL+ LC + Y T ++F TR VD L +
Sbjct 240 LVKRDELTLEGIKQFYVAVEKEDWKLDTLC----DLYETVTITQAVIFCNTRRKVDWLTD 295
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
KL+ + + G Q ++ I+ F+ SG +LI T + GID
Sbjct 296 ------KLTSREFTVSAMHGDMEQ------AQREVIMREFR-SGSSRVLITTDLLARGID 342
Query 706 IAQCNLVILYEYVGN 720
+ Q +LVI Y+ N
Sbjct 343 VQQVSLVINYDLPSN 357
>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 17/102 (17%)
Query 617 ILQEEYHLNPETITILFVKTRALVDAL--KNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L E Y L +I+FVKT+ + L K EG+ K S L G+ T
Sbjct 331 VLSELYGLLTIGSSIIFVKTKDTANILYAKMKKEGH-KCSILHAGLETSE---------- 379
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ ++D F+ G +LI T+V GIDIA ++V+ Y+
Sbjct 380 ---RDRLIDDFR-EGRSKVLITTNVLARGIDIASVSMVVNYD 417
>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (46%), Gaps = 14/129 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+E K L +L E Y + + +++FV+ + D L L+ + G G
Sbjct 607 DEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADEL------------LRELLRKGYG 654
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + G + + FK SG ++IATSVA G+D+ Q LV+ Y+ ++ +
Sbjct 655 CMSLHGGKDQVDRDSTISDFK-SGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV 713
Query 726 QTRGR-GRA 733
GR GRA
Sbjct 714 HRAGRTGRA 722
>sp|D0KN27|HELS_SACS9 ATP-dependent DNA helicase Hel308 OS=Saccharolobus
solfataricus (strain 98/2) OX=555311 GN=hel308 PE=1
SV=1
Length=715
Score = 35.4 bits (80), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G ++ +PTG GKT LI E + F GK + + + +K + K +
Sbjct 44 LEGNRLLLTSPTGSGKT----LIAEMGIISFLLKNGGKAI-YVTPLRALTNEKYLTFKDW 98
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G++V SG + + ++N DIII T + L ++L + L+ + DE
Sbjct 99 ELIGFKVAMTSGDYDTD---DAWLKNYDIIITTYEKL-DSLWRHRPEWLNEVNYFVLDEL 154
Query 375 H 375
H
Sbjct 155 H 155
>sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3
SV=1
Length=590
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (44%), Gaps = 10/108 (9%)
Query 255 MKGKNTIICAPTGCGKTFVSLLIC---EHHLKKFPQGQKGKVVFFANQIPVYE---QQKS 308
+ GK+ + A TG GKT L+ HH P+ G VV P E Q +
Sbjct 131 LNGKDVMGAAKTGSGKTLAFLIPAIEMLHHAHFMPRNGTGVVVV----CPTRELAIQTHN 186
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
V + + H + I G +Q+ + ++++ TP L+++L+
Sbjct 187 VAKELMKYHSQTLGYIIGGNGRRGEADQLAKGVNLLVATPGRLLDHLQ 234
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 55/139 (40%), Gaps = 12/139 (9%)
Query 241 FKPRNYQLELALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
KP Q + ALP A++GK+ I A TG GKT + L PQ FF
Sbjct 65 MKPSKIQ-QAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQA------FFCLV 117
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE----QIVENNDIIILTPQILVNNL 355
+ + + FE G + I+ V + + II+ TP LV++L
Sbjct 118 LTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDHL 177
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ +L +I DE
Sbjct 178 ENTKGFNLKALKFLIMDEA 196
>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1
Length=497
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (44%), Gaps = 10/110 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLIC---EHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
P + GK+ + A TG GKT L+ H LK P+ G +V P E +
Sbjct 67 PLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIVI----TPTRELALQI 122
Query 310 FS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
F + E H + G +++++ +I+I TP L+++L+
Sbjct 123 FGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQ 172
>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3
SV=1
Length=618
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 118/292 (40%), Gaps = 63/292 (22%)
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
Y W+ + C+V+ D E+ R ++ + D L+++ R+ D +D K
Sbjct 269 YRSWV----RPCVVYGGADIGEQMR----------NIERGCD-LLVAAPGRLVDLIDRGK 313
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS-NEN---------PK-------- 610
N++ DE ++ L FE +++ + S P NE P+
Sbjct 314 VSLENIKYLVLDEADRMLDMGFEPQIRAIVQGSGMPDVNERQTLMFSATFPRNIQMLARD 373
Query 611 -LEDLCFILQEEYHLNPETIT--ILFV----KTRALVDALKNWIEGNPKLSFLKPGILTG 663
L+D F+ E IT + +V K AL+D L +G L F++ T
Sbjct 374 FLKDYIFLSVGRVGSTSENITQKVEYVEDGDKISALLDILSAAGKG-LTLVFVE----TK 428
Query 664 RG--------KTNQNTGMTLPAQKCILDAFKA-----SGDHNILIATSVADEGIDIAQCN 710
RG ++ ++ + D +A G IL+AT+VA G+DI
Sbjct 429 RGADYLCDVLQSEDFPATSIHGDRSQRDRERALEMFRDGTTPILVATAVAARGLDIPNVT 488
Query 711 LVILYEYVGNVIKMIQTRGR-GRARGSK---CFLLTSNAGVIEKEQINMYKE 758
V+ Y+ ++ + GR GRA + F N G++ +E I++ KE
Sbjct 489 HVVNYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNKGIV-RELIDILKE 539
>sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0728800 PE=2
SV=1
Length=670
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/137 (26%), Positives = 62/137 (45%), Gaps = 15/137 (11%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ----IPVYEQ 305
A+P ++GK+ + A TG GKTF LL H L K +G++ A +P E
Sbjct 122 AIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKL--SAEGRIRKSAPNVFILVPTREL 179
Query 306 QKSVFSKY-----FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ V ++ F +V ++ + ++ + +I++ TP + + + KG I
Sbjct 180 CQQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGII 239
Query 361 PSLSI---FTLMIFDEC 374
SI ++MI DE
Sbjct 240 RGSSIKESLSMMILDEA 256
>sp|Q4JC00|HELS_SULAC ATP-dependent DNA helicase Hel308 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) OX=330779 GN=hel308 PE=3 SV=1
Length=705
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (41%), Gaps = 45/210 (21%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
K +I PT GKT ++ L HL + GK ++ + ++ S F K +E+
Sbjct 43 KRLLITTPTASGKTLMAELGMISHL----LNKGGKAIYVTPLRALTSEKYSTF-KDWEKL 97
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 377
G++V SG + P + N DII+ T + L ++L + + L + DE H
Sbjct 98 GFKVGVTSGDYDTDDP---WLRNFDIIVTTYEKL-DSLWRHSAEWLKDIDYFVLDEFH-- 151
Query 378 SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA---------SVGVGDAKNTDEALDYIC 428
Y++ G GP+ + + + A S +G+AK+
Sbjct 152 ------------YMND---GDRGPVVEGVAVRAKRQGTILALSATIGNAKD--------- 187
Query 429 KLCASLDASVIATVKHNLEELEQVVYKPQK 458
+ L+A ++AT + E V+Y K
Sbjct 188 -VAKWLNADIVATNWRPVPLKEGVMYSEGK 216
>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 22/132 (17%)
Query 615 CFILQEEYHLNPETITILFVKT----RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
CF++ L P ++ ++FV+T R L L+N L F K ++G+ ++
Sbjct 271 CFLVHVLNEL-PGSMIMIFVRTCESTRLLALTLRN-------LRF-KAISISGQMSQDKR 321
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
G L+ FK + D NILI T VA G+DI ++VI Y+ N + GR
Sbjct 322 LGA--------LNRFK-TKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGR 372
Query 731 GRARGSKCFLLT 742
G+ + ++
Sbjct 373 TARAGNTGYAVS 384
>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472
Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 22/132 (17%)
Query 615 CFILQEEYHLNPETITILFVKT----RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
CF++ L P ++ ++FV+T R L L+N L F K ++G+ ++
Sbjct 271 CFLVHVLNEL-PGSMIMIFVRTCESTRLLALTLRN-------LRF-KAISISGQMSQDKR 321
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
G L+ FK + D NILI T VA G+DI ++VI Y+ N + GR
Sbjct 322 LGA--------LNRFK-TKDCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGR 372
Query 731 GRARGSKCFLLT 742
G+ + ++
Sbjct 373 TARAGNTGYAVS 384
>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668
Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/132 (26%), Positives = 59/132 (45%), Gaps = 2/132 (2%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P Q+++ +K + + APTG GKT S I P+ + + V A +
Sbjct 222 PSPIQMQVIPILLKEREVVAIAPTGSGKT-ASFSIPILQALYEPKKEGFRSVIIAPTREL 280
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
+Q F + +R+ +S E +++N DI+I TP LV +K+ + S
Sbjct 281 AQQIYRNFRLLSKGKPFRICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLIKENLL-S 339
Query 363 LSIFTLMIFDEC 374
L+ ++FDE
Sbjct 340 LNKVEYLVFDEA 351
>sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2
Length=397
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G +Q
Sbjct 246 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMDQ 299
Query 670 NTGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
AQ+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 300 -------AQRDLIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 343
>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1
PE=3 SV=1
Length=395
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (46%), Gaps = 19/136 (14%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L ++ E L+ ++ D E+ K E LC + Y + ++F TR VD L
Sbjct 224 LVKKDELTLEGIKQFYIDVEQESYKFEVLC----DLYETINVSQAVIFCNTRRKVDYLTQ 279
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E + +S + G+T Q+ + I+ AF+ +G ILI T + GI
Sbjct 280 ALTEADFTVSSM-------HGETEQS------QRDVIMKAFR-TGSSRILITTDLLARGI 325
Query 705 DIAQCNLVILYEYVGN 720
D+ Q +LVI ++ N
Sbjct 326 DVQQVSLVINFDLPSN 341
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
OX=284591 GN=PRP28 PE=3 SV=1
Length=575
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/56 (36%), Positives = 30/56 (54%), Gaps = 3/56 (5%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLL 741
G ++L+AT VA G+DI +LV+ ++ N+ GR GRA RG+ L
Sbjct 480 GAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRTGRAGKRGTAVTFL 535
>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47,
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551
Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
+ +L FK +G+ +L+ ++ G+D+A+C+LV+ E + + GR G
Sbjct 445 GRSTVLKKFK-NGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGR 503
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
K ++T V E+ Q+ + K+
Sbjct 504 KGTVVT----VCEESQVFIVKK 521
>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 21/116 (18%)
Query 603 DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL--KNWIEGNPKLSFLKPGI 660
D N+ K E LC E Y L +I+FV+ +A D+L + EG+ I
Sbjct 334 DCKNQEHKFEVLC----ELYGLLTIGSSIIFVEQKATADSLYLRMKEEGHT------VSI 383
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
L G G+ + + ++D F+ G +LI T+V GIDIA ++V+ Y+
Sbjct 384 LHG--------GLEVADRDRLIDDFR-EGRSKVLITTNVLARGIDIATVSMVVNYD 430
>sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=TIF1 PE=3 SV=1
Length=396
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 24/112 (21%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G +Q
Sbjct 245 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMDQ 298
Query 670 NTGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
AQ+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 299 -------AQRDLIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 342
>sp|Q8I912|B1H_LOXLA Dermonecrotic toxin LlSicTox-betaIA1 OS=Loxosceles
laeta OX=58217 PE=1 SV=1
Length=304
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query 53 AATLFLKFLLE-LQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKR 109
A ++ LE + + + GF DA+D +G++ LYE I WDF E L E R + ++
Sbjct 151 GARAYIVLSLETITRQDFISGFKDAIDASGHTELYEKI-GWDFSGNEDLGEIRRIYQK 207
>sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 /
NCTC 10195 / G37) OX=243273 GN=MG425 PE=3 SV=1
Length=449
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query 242 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q ++++P + KN I+ +PTG GKT + L K Q K +V +
Sbjct 25 KPTKIQ-QISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVIAPTR- 82
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ EQ K+ FS + R+ + G +++I N II+ T +++ L++ I
Sbjct 83 ELVEQIKTTFSNIAKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLERKAI 142
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 393
S +I DE + + +FN L+Q
Sbjct 143 -HFSDLEHLIIDEV-DLMLDRGFKKQIFNLLEQ 173
>sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp9
PE=3 SV=1
Length=619
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (47%), Gaps = 8/131 (6%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIP---VYEQ 305
A+P A++GK+ + A TG GKT +L I + L+K K +P + EQ
Sbjct 57 AIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLVLVPTRELAEQ 116
Query 306 QKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
+SV K+ F R ++ ++ V + + D+I+ TP ++ NL + SL
Sbjct 117 VQSVIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSAL-SL 175
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 176 EHLTHLVIDEA 186
>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3
SV=1
Length=619
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query 683 DAFKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
DAFK+ + + ++L+AT VA +G+DI VI Y+ + + GR RG
Sbjct 465 DAFKSFKASEKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIGRTGRRGKTGVA 524
Query 741 LT 742
T
Sbjct 525 TT 526
>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 16/139 (12%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P Q E A++GK+ I A TG GKT L H L + PQ +FA +
Sbjct 84 PSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQ------RYFALVLTP 137
Query 303 YEQQKSVFSKYFERHGYR-------VTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + FE G V G A+ + Q+ + III TP LV++L
Sbjct 138 TRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGL---QLAKKPHIIIATPGRLVDHL 194
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ +L ++ DE
Sbjct 195 ENMKGFNLKAIKYLVMDEA 213
>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/94 (30%), Positives = 46/94 (49%), Gaps = 11/94 (12%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSK 737
L FK SG IL+AT VA G+DI +LVI Y+ + + GR GR +
Sbjct 345 LSKFK-SGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAV 403
Query 738 CFLLTSNAGVIEK------EQINMYKEKMMNDSI 765
+ ++ +I K +++ Y +K++ DS+
Sbjct 404 SIITETDVKLIHKIEEEVGKKMEPYNKKVITDSL 437
>sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp9 PE=3 SV=1
Length=616
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/139 (27%), Positives = 61/139 (44%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQI 300
KP Q + A+ GK+ + A TG GKT +L I + L+K K +
Sbjct 49 KPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILV 108
Query 301 P---VYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
P + EQ + V + + F R ++ +E V + + DI+I TP ++ NL
Sbjct 109 PTRELAEQVQKVVTTFAAFCGKDVRSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANL 168
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ SL T ++ DE
Sbjct 169 GNSSL-SLDNLTHLVIDEA 186
>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 51/111 (46%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ + I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 S------QRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (45%), Gaps = 6/130 (5%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLLICEHHLK-KFPQGQKGKVVFFANQIPVYE---Q 305
A+P AM G++ ++ A TG GKT L H L+ + P+ ++ F +P E Q
Sbjct 54 AIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQ 113
Query 306 QKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
+ + R + V G I G ++ + I+I TP L+++L+ +
Sbjct 114 VYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYP 173
Query 365 IFTLMIFDEC 374
++FDE
Sbjct 174 NMRWIVFDEA 183
>sp|F0NDL2|HELS_SULIR ATP-dependent DNA helicase Hel308 OS=Sulfolobus
islandicus (strain REY15A) OX=930945 GN=hel308 PE=1
SV=1
Length=715
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G ++ +PTG GKT LI E + F GK + + + +K + K +
Sbjct 44 LDGNRLLLTSPTGSGKT----LIAEMGIISFLLKNGGKAI-YVTPLRALTNEKYLTFKDW 98
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G++V SG + + ++N DIII T + L ++L + L+ + DE
Sbjct 99 ESIGFKVAMTSGDYDTD---DAWLKNYDIIITTYEKL-DSLWRHRPDWLNEANYFVLDEL 154
Query 375 H 375
H
Sbjct 155 H 155
>sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3
SV=1
Length=497
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 17/102 (17%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMT 674
IL + Y L +I+FVKTRA ++ + EG+ +S LTG G+
Sbjct 321 ILVKFYGLLTIGSSIIFVKTRASAVEIERRMVAEGHTVVS------LTG--------GVE 366
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ I+D F+ GD +LI T+V GID+ ++VI Y+
Sbjct 367 GQKRDEIIDKFR-QGDAKVLITTNVLARGIDVQTVSMVINYD 407
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974
Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/142 (31%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHL--NPETIT---ILFVKTRALVDALKNWIE 648
LQE E R S + KL ++ I + Y N E T I+FV RA+ D L +
Sbjct 781 LQEFEKCDR--SEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASI-- 836
Query 649 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 708
LS + +T G Q + L F+ +G +LIAT+VA+ G+DI
Sbjct 837 ----LSSAQVPAITIHGAREQRE------RSEALRQFR-NGSKPVLIATAVAERGLDIKG 885
Query 709 CNLVILYEYVGNVIKMIQTRGR 730
+ VI Y+ N+ I GR
Sbjct 886 VDHVINYDMPDNIDDYIHRIGR 907
>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=HAS1 PE=3 SV=1
Length=610
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/109 (24%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQIPVYEQQKSV 309
P + GK+ + A TG GKT L+ L P+ G +V P E +
Sbjct 164 PLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRFKPRNGTGVIVVS----PTRELALQI 219
Query 310 FS---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
F + E+H + G E++ + +++I TP L+++L
Sbjct 220 FGVARELMEKHSQTFGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHL 268
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1
OS=Homo sapiens OX=9606 GN=HFM1 PE=1 SV=2
Length=1435
Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (46%), Gaps = 4/120 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFER 316
+N +ICAPTG GKT V L L + P K+V+ A + Q+ + + F
Sbjct 297 RNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGP 356
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL-SIFTLMIFDECH 375
G ++G T + E +++ II+ TP+ + +K SL + L + DE H
Sbjct 357 IGLNCKELTGDTVMDDLFE--IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVH 414
>sp|Q68XG5|UVRB_RICTY UvrABC system protein B OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) OX=257363 GN=uvrB PE=3
SV=1
Length=662
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYE-----YVGNVIKMIQTRGRGRARGSK 737
G+ +IL+ ++ EGIDI +C LV + + ++ + + +IQT GR AR S+
Sbjct 494 GNIDILVGINLLREGIDIPECGLVAILDADKEGFLRSEVSLIQTIGRA-ARNSR 546
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2
SV=2
Length=792
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/54 (39%), Positives = 30/54 (56%), Gaps = 2/54 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+L F+ SG IL+AT VA G+DI +VI Y++ + + GR GRA
Sbjct 436 VLSHFR-SGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRA 488
>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/135 (27%), Positives = 58/135 (43%), Gaps = 17/135 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L ++ E L+ ++ + EN KL LC + Y T +++F TR VD L
Sbjct 232 LVKKEELTLEGIKQFYVNVKQENWKLGTLC----DLYDTLSITQSVIFCNTRRKVDQLTQ 287
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
++S + G Q ++ I+ F+ SG +LI T + GID
Sbjct 288 ------EMSIHNFTVSAMHGDMEQRD------REVIMKQFR-SGSSRVLITTDLLARGID 334
Query 706 IAQCNLVILYEYVGN 720
+ Q +LVI Y+ N
Sbjct 335 VQQVSLVINYDLPSN 349
>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=TIF1 PE=3 SV=1
Length=396
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query 627 ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK-CI 681
ET+TI +F TR VD W+ KL+ + G +Q AQ+ I
Sbjct 258 ETVTITQAVIFCNTRRKVD----WL--TDKLTARDFTVSAMHGDMDQ-------AQRDVI 304
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 305 MKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 342
>sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56
OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
Length=546
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/138 (27%), Positives = 62/138 (45%), Gaps = 16/138 (12%)
Query 249 ELALP-AMKGKNTIICAPTGCGKTF---VSLLICEHHLKK----FPQGQKGKVVF----F 296
E A+P A++GK+ + A TG GKT + +L H K Q +G V+
Sbjct 35 EKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKEL 94
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
A Q QQ + Y R RV +S A ++E D+++ TP ++++L+
Sbjct 95 ARQAQAMIQQ---LAAYCAR-DVRVANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQ 150
Query 357 KGTIPSLSIFTLMIFDEC 374
+ T+ L++ DE
Sbjct 151 QNTLKLRDSLELLVVDEA 168
>sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1
Length=398
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/98 (32%), Positives = 45/98 (46%), Gaps = 17/98 (17%)
Query 627 ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
ET+TI +F TR VD L + KL+ + G +Q + I+
Sbjct 260 ETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMDQG------QRDLIM 307
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 308 KEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=tif1 PE=3 SV=1
Length=398
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/98 (32%), Positives = 45/98 (46%), Gaps = 17/98 (17%)
Query 627 ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
ET+TI +F TR VD L + KL+ + G +Q + I+
Sbjct 260 ETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMDQG------QRDLIM 307
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 308 KEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 2/107 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + A M GK+ I +PTG GKT L +K P+ + + V A
Sbjct 26 KPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIK--PEQKHPQAVILAPSRE 83
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
+ Q V + R + G VE++ ++ II+ TP
Sbjct 84 LVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTP 130
>sp|Q3B0J9|SYK_SYNS9 Lysine--tRNA ligase OS=Synechococcus sp.
(strain CC9902) OX=316279 GN=lysS PE=3 SV=1
Length=502
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/59 (36%), Positives = 33/59 (56%), Gaps = 2/59 (3%)
Query 56 LFL-KFLLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIE-KLEEYRLLLKRLQP 112
LFL K LE Q+EGWF+ +D + G+ + D ++ K+ ++R+L K LQP
Sbjct 82 LFLEKAGLEAQQEGWFKQITSLVDAGDWLGVSGTLRRTDRGELSVKVRDWRMLSKSLQP 140
>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 56/236 (24%), Positives = 91/236 (39%), Gaps = 33/236 (14%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
+M D E IC+ L H + LI+S + + F A EI
Sbjct 486 RMIDVGLEGNICRLLCRLRPHAQ-----LIVSSTSWSSNLKRMANKFLGQYTAIRVGEIN 540
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN--PETITILFVKTRALVD 641
++ R + Q +E V N K+E L L Y + P + +++VK + +V+
Sbjct 541 -NIGVRLQNIRQRVEVV-----NGLSKVERLMKELTAIYDTSDIPGKV-VIYVKRQKVVE 593
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L + I GI GR T + I+ F +G +NI++AT +
Sbjct 594 ELVDLIRNCVPCE----GIHGGR---------TAQENQGIIHDF-GTGAYNIIVATQMTS 639
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+D+ VI Y++ N+ K +Q R + C N VI + YK
Sbjct 640 NCLDVPGIRYVINYDFPDNIDKYVQRMSR-----TGCLSYNRNCEVISFFTMANYK 690
>sp|Q97VY9|HELS_SACS2 ATP-dependent DNA helicase Hel308 OS=Saccharolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM
11322 / P2) OX=273057 GN=hel308 PE=3 SV=1
Length=708
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G ++ +PTG GKT LI E + F GK + + + +K + K +
Sbjct 37 LDGNRLLLTSPTGSGKT----LIAEMGIISFLLKNGGKAI-YVTPLRALTNEKYLTFKDW 91
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G++V SG + + ++N DIII T + L ++L + L+ + DE
Sbjct 92 ESIGFKVAMTSGDYDTD---DAWLKNYDIIITTYEKL-DSLWRHRPDWLNEANYFVLDEL 147
Query 375 H 375
H
Sbjct 148 H 148
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/76 (32%), Positives = 37/76 (49%), Gaps = 2/76 (3%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G G + G++ A+ L+ F+A G IL+AT VA G+DI + VI ++ +
Sbjct 354 GMGAIPLHGGLSQSARLGALNKFRA-GSREILVATDVAARGLDIPNVDCVINHDLPQDSK 412
Query 723 KMIQTRGRGRARGSKC 738
+ GR AR K
Sbjct 413 TYVHRVGR-TARAGKS 427
>sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) OX=559292 GN=YEF3 PE=1
SV=4
Length=1044
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/54 (30%), Positives = 24/54 (44%), Gaps = 0/54 (0%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
IC P GCGK+ + I + FP ++ + V+ + I SV FE
Sbjct 461 ICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE 514
>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3
SV=1
Length=547
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 12/135 (9%)
Query 251 ALPAM-KGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
++P M G++ I CAPTG GKT S+ + E KK K + P E
Sbjct 141 SIPTMLNGRDLIACAPTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQ 200
Query 309 VFSKYF--------ERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGT 359
+F+ F ++ + + +TA+ + ++ DI I TP LV+ L G+
Sbjct 201 IFNAVFSLCVGVGKKKDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSALNDGS 260
Query 360 IPSLSIFTLMIFDEC 374
+ L L+IFDE
Sbjct 261 L-DLGSLDLVIFDEA 274
>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28
PE=3 SV=1
Length=705
Score = 35.0 bits (79), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+G NIL+AT +A GID+A +LV+ + ++ GR GRA
Sbjct 590 NGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRA 636
>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L++FKA G ++L+AT VA G+DI + LVI + + + + I GR +G
Sbjct 495 LESFKA-GTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAI 553
Query 739 FLLT 742
L T
Sbjct 554 TLFT 557
>sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease
subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1
Length=810
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query 243 PRNYQLELALPAMK----GKNTIICA-PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 297
PR YQL+ ++ G+N ++ TG GKT+ + I + + K +++F A
Sbjct 170 PRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQII---WRLWKSKNKKRILFLA 226
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
++ + +Q K+ F+ G +T +SG T + P +I I P+ K+
Sbjct 227 DRNILVDQTKN---NDFQPFGTAMTKVSGRTID--PAYEIHLALYQAITGPEEDQKAFKQ 281
Query 358 GTIPSLSIFTLMIFDECHNTS 378
P F L++ DECH S
Sbjct 282 -VAPDF--FDLIVIDECHRGS 299
>sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1
Length=479
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/115 (28%), Positives = 56/115 (49%), Gaps = 19/115 (17%)
Query 603 DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSFLKPGIL 661
D +E+ K + LC + Y L +++FV+TR ++ +E + K+S L G
Sbjct 292 DCPDESKKYDILCKL----YGLMTIGSSVIFVRTRESASEIQRRMEADGHKVSALH-GAH 346
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
G+ + +LD F+ SG +LI T+V GID++ ++VI Y+
Sbjct 347 EGQNR------------DALLDDFR-SGRSKVLITTNVLARGIDVSSVSMVINYD 388
>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 67/165 (41%), Gaps = 15/165 (9%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
V+ DL D + T F Q D Q NS + D +P P Q A+P
Sbjct 149 VQGTDLPDPIAT-----FQQLD---QEYKINSRLLQNILDAGFQTP-TPIQMQ---AIPV 196
Query 255 M-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
M G+ + APTG GKT + HLK+ P + + + + + Q K
Sbjct 197 MLHGRELLASAPTGSGKTLAFSIPILMHLKQ-PTNKGFRALIISPTRELASQIHRELVKL 255
Query 314 FERHGYRVTGI-SGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
E G+R+ I A A + + DI++ TP L+ LK+
Sbjct 256 SEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQ 300
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 83/203 (41%), Gaps = 46/203 (23%)
Query 210 QIFYQEDPECQNLSENSC------PPSEVSDTNLYSPFKPRNY--------------QLE 249
+IFY+E P+ NL+E ++ T+L +P + +E
Sbjct 267 KIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIE 326
Query 250 LALP--------AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
P A+ G++ I A TG GKT + H+ P +KG +F A
Sbjct 327 TPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLA- 385
Query 299 QIPVYEQQKSV------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
P E + +SKYF+ + T + G ++ +++ +II+ TP L+
Sbjct 386 --PTRELAHQIYLETLKYSKYFK---LKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLI 440
Query 353 NNLK-KGTIPSLSIFTLMIFDEC 374
+ +K K T L+ + ++ DE
Sbjct 441 DMIKLKAT--KLNRVSYLVLDEA 461
>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp3 PE=3 SV=1
Length=495
Score = 35.0 bits (79), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/64 (36%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L++FK G +L+AT VA G+DI LVI + V + + I GR A G
Sbjct 373 LESFK-KGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAI 431
Query 739 FLLT 742
L T
Sbjct 432 TLFT 435
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK----FPQGQKGKVVFFANQIPV 302
Q++ P +GK+ I A TG GKTF + L++ + + KV+ A +
Sbjct 161 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 220
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q F + V G T+ + QI DI++ TP + ++L+ G +
Sbjct 221 ANQVAKDFKDITRK--LSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRL-D 277
Query 363 LSIFTLMIFDEC 374
LS ++ DE
Sbjct 278 LSKLRHVVLDEV 289
>sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=HAS1 PE=3 SV=2
Length=587
Score = 35.0 bits (79), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/110 (25%), Positives = 49/110 (45%), Gaps = 10/110 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQIPVYEQQKSV 309
P + GK+ + A TG GKT L+ L+ P+ G +V P E +
Sbjct 145 PLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIVV----SPTRELALQI 200
Query 310 F--SKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
F ++ +H + GI G E++ + +++I TP L+++L+
Sbjct 201 FGVARDLMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQ 250
>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3
SV=1
Length=450
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E K + LC + Y T ++F TR VD L +
Sbjct 227 LVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 282
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + G+ Q + I+ F+ G+ +LI+T V GI
Sbjct 283 KMREANFTVSSMH-------GEMPQK------ERDSIMQDFR-QGNSRVLISTDVWARGI 328
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 329 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 361
>sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1
PE=3 SV=1
Length=421
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 51/111 (46%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 270 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 323
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ + I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 324 S------QRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 367
>sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis
thaliana OX=3702 GN=RH50 PE=2 SV=2
Length=781
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/143 (24%), Positives = 60/143 (42%), Gaps = 15/143 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-----ICEHHLKKFPQGQKG--KVV 294
+P + Q P + GK+ II +G GKT L+ + E L+ + G +V+
Sbjct 396 RPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVI 455
Query 295 FFANQIPVYEQQKSVFS--KYFERHG--YRVTGISGATAENVPVEQIVENNDIIILTPQI 350
+P E V + + + G +R ++G + +E + + D++I TP
Sbjct 456 VL---VPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGR 512
Query 351 LVNNLKKGTIPSLSIFTLMIFDE 373
+ +G I LS I DE
Sbjct 513 FTYLMNEG-ILGLSNLRCAILDE 534
>sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=cshC PE=2 SV=1
Length=389
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/133 (25%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query 251 ALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
A+P ++G++ I +PTG GKT LL H + P+ ++ +VV A + Q
Sbjct 28 AIPTILEGQDVIAESPTGTGKTLAYLLPLLHKIN--PEVKQPQVVVLAPTRELVMQIHEE 85
Query 310 FSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G ++G S G VE++ ++ +I+ +P ++ ++ + + T
Sbjct 86 VQKFTA--GTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKKLKMHEVKT 143
Query 368 LMIFDECHNTSKQ 380
+ +FDE KQ
Sbjct 144 I-VFDEFDQIVKQ 155
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (44%), Gaps = 18/105 (17%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F +T+ L I G+ L G Q AQ+ ++ A SG
Sbjct 372 TIIFTETKESASDLSGLIAGSRAL----------HGDVAQ-------AQREVILAGFRSG 414
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+L+AT+VA G+DI L+I E +V I GR GRA
Sbjct 415 KFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRA 459
>sp|A0PY57|POTA_CLONN Spermidine/putrescine import ATP-binding
protein PotA OS=Clostridium novyi (strain NT) OX=386415 GN=potA
PE=3 SV=1
Length=347
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/82 (32%), Positives = 39/82 (48%), Gaps = 9/82 (11%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
N+Y F ++ L K + + P+GCGKT +L I L F G+V+F
Sbjct 10 NVYKEFNGVPILKDINLNIKKNEFLTLLGPSGCGKT-TTLRI----LGGFEDATNGEVIF 64
Query 296 FA---NQIPVYEQQ-KSVFSKY 313
N +P Y++Q +VF KY
Sbjct 65 EGKKINDVPPYKRQINTVFQKY 86
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis
thaliana OX=3702 GN=RH21 PE=2 SV=1
Length=733
Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/128 (26%), Positives = 57/128 (45%), Gaps = 18/128 (14%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--------QGQKGKV 293
KP Q+ ++ ++ I A TG GKT +L ++ + P +G V
Sbjct 335 KPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVV 394
Query 294 VF----FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
+ A QI E++ F+ Y G+RVT I G + +I + +I+I TP
Sbjct 395 MAPTRELAQQI---EEETVKFAHYL---GFRVTSIVGGQSIEEQGLKITQGCEIVIATPG 448
Query 350 ILVNNLKK 357
L++ L++
Sbjct 449 RLIDCLER 456
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 16/118 (14%)
Query 627 ETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
E I+FV T+ D++ KN + +++ L + G + ++ L+ F
Sbjct 576 EKTAIVFVNTKKNCDSIAKNLDKAGYRVTTL-------------HGGKSQEQREISLEGF 622
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
+A +N+L+AT V GIDI VI Y+ ++ GR R K + TS
Sbjct 623 RAK-RYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRT-GRAGKSGVATS 678
>sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein
1 OS=Gallus gallus OX=9031 GN=CHD1 PE=1 SV=1
Length=1719
Score = 35.0 bits (79), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (49%), Gaps = 9/107 (8%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + V++++ N +Q + R G
Sbjct 839 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 898
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL--RLQTWDEAVF 776
K + L + G +E++ + K+KM+ D ++ R+ T + V
Sbjct 899 QKKQVNIYRLVTK-GSVEEDILERAKKKMVLDHLVIQRMDTTGKTVL 944
>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581
Score = 34.7 bits (78), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/53 (42%), Positives = 30/53 (57%), Gaps = 2/53 (4%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
L+AFK SG +L+AT VA G+DI + LVI + + + GR GRA
Sbjct 460 LEAFK-SGQTPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRA 511
>sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp9 PE=3 SV=1
Length=649
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (47%), Gaps = 8/131 (6%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIP---VYEQ 305
A+P A++GK+ + A TG GKT +L I + L+K K +P + EQ
Sbjct 87 AIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQ 146
Query 306 QKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
+SV K+ F R ++ ++ V + + D+I+ TP ++ NL + SL
Sbjct 147 VQSVIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSAL-SL 205
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 206 ENLTHLVIDEA 216
>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/126 (25%), Positives = 56/126 (44%), Gaps = 2/126 (2%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
A+P A+ GK+ + A TG GKT LL + E L + + + +V+ + Q +S
Sbjct 220 AIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQCQS 279
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V + I G + ++ ++ D++I TP L+++L L +
Sbjct 280 VMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEI 339
Query 369 MIFDEC 374
+I DE
Sbjct 340 LILDEA 345
>sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2
Length=398
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
AQ+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 -------AQRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590
GN=PRP28 PE=3 SV=1
Length=539
Score = 34.7 bits (78), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLT 742
+G +ILIAT VA GIDI +LV+ ++ + + GR GRA G+ LT
Sbjct 436 NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVGRTGRAGKTGTALTFLT 493
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein
1 OS=Homo sapiens OX=9606 GN=CHD1 PE=1 SV=2
Length=1710
Score = 35.0 bits (79), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (49%), Gaps = 9/107 (8%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + V++++ N +Q + R G
Sbjct 843 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 902
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL--RLQTWDEAVF 776
K + L + G +E++ + K+KM+ D ++ R+ T + V
Sbjct 903 QKKQVNIYRLVTK-GSVEEDILERAKKKMVLDHLVIQRMDTTGKTVL 948
>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8
PE=3 SV=1
Length=440
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 1/56 (2%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
L FKA G ILIAT VA G+DI LVI ++ + I GR G K
Sbjct 296 LHRFKA-GAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRK 350
>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP5 PE=3 SV=1
Length=546
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (3%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ ILD F+ +G+ +LI T+V GIDI N+V+ Y+
Sbjct 427 RDAILDGFR-NGETKVLITTNVIARGIDIPAVNMVVNYD 464
>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1
PE=3 SV=2
Length=396
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 51/111 (46%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 245 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 298
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ + I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 299 SQ------RDIIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 342
>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 0/55 (0%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
+G HNIL+AT+V G+DI +V+ Y+ ++ + + GR G++ ++
Sbjct 564 TGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYVHRIGRTGRLGNRGLSIS 618
>sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=tif1 PE=3 SV=1
Length=398
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 50/111 (45%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 G------QRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=1
Length=546
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (3%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ ILD F+ +G+ +LI T+V GIDI N+V+ Y+
Sbjct 427 RDAILDGFR-NGETKVLITTNVIARGIDIPAVNMVVNYD 464
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+L+ F+ SG +L+AT VA G+D+ +V+ Y++ V + GR GRA
Sbjct 447 VLNQFR-SGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRA 499
>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660
Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/148 (24%), Positives = 69/148 (47%), Gaps = 17/148 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
Query 731 GRARGSKCFLLTSNAGVIEKEQINMYKE 758
R L TS ++ IN+ K+
Sbjct 530 -TGRVGNLGLATS---FFNEKNINITKD 553
>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/109 (24%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q ++ + G + I + TG GKT +L HL QK + + P
Sbjct 23 RPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHLL-----QKNRSFYCLVVAP 77
Query 302 VYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
E + + F+ G RV + G NV Q+ + +++ TP
Sbjct 78 TRELSSQIAECFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTP 126
>sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1
PE=3 SV=1
Length=398
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
AQ+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 -------AQRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1
Length=790
Score = 34.7 bits (78), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 62/149 (42%), Gaps = 19/149 (13%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVF----- 295
KP Q A++GK+ I A TG GKT + I E HL+K + + K V
Sbjct 221 KPTAIQKRTIPLAIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTG 280
Query 296 --------FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
A+Q+ + + + F+ +HG + I+G + + I++ T
Sbjct 281 IIFAPTRELAHQVVDHLNRIAKFTP-LSQHG--IVSITGGLSIQKQERLLSHGPGIVVAT 337
Query 348 PQILVNNLKK--GTIPSLSIFTLMIFDEC 374
P + L+K + LS +++ DE
Sbjct 338 PGRFLELLQKDMALVQRLSCTDIVVLDEA 366
>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/66 (35%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGS 736
I++ F+ +G+ +LI+T V GID+ Q +LVI Y+ N I I GR +G
Sbjct 306 SIMNDFR-TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGV 364
Query 737 KCFLLT 742
L+T
Sbjct 365 AINLIT 370
>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (51%), Gaps = 17/102 (17%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMT 674
IL + Y L +I+FVKTRA ++ + EG+ +S LTG G+
Sbjct 324 ILVKFYGLLTIGSSIIFVKTRASAAEIERRMVAEGHTVVS------LTG--------GIE 369
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ I+D F+ +G +LI T+V GID++ ++VI Y+
Sbjct 370 GQKRDEIIDRFR-NGTAKVLITTNVLARGIDVSTVSMVINYD 410
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/57 (37%), Positives = 31/57 (54%), Gaps = 2/57 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
+L F+A G +L+AT VA G+DI +VI Y++ + + GR GRA S
Sbjct 431 VLSQFRA-GRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGAS 486
>sp|Q57742|HELX_METJA Uncharacterized ATP-dependent helicase MJ0294
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0294
PE=3 SV=1
Length=841
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (56%), Gaps = 0/34 (0%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK 290
GKN +IC+PTG GKT + L + L K K
Sbjct 49 GKNVLICSPTGSGKTLSAFLAGINELIKLSMENK 82
>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3
SV=1
Length=385
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/111 (31%), Positives = 50/111 (45%), Gaps = 22/111 (20%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD W+ KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVD----WL--TDKLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 QQ------RDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402
Score = 34.3 bits (77), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (42%), Gaps = 15/117 (13%)
Query 622 YHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
Y++ T ++F TR VD L + E +S L G +Q +
Sbjct 263 YNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCL-------HGDMDQ------AERDT 309
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
I+ F+ SG +LI T + GID+ Q +LVI Y+ N I GR G K
Sbjct 310 IMREFR-SGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 365
>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660
Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 13/120 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (47%), Gaps = 17/149 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+++ F+L +++T++FV+T+ DAL++++ G T+
Sbjct 465 EMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFL------------YHEGYACTSI 512
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + G
Sbjct 513 HGDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 571
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKE 758
R R L TS ++ IN+ K+
Sbjct 572 R-TGRVGNLGLATS---FFNEKNINITKD 596
>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (44%), Gaps = 9/140 (6%)
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVV 294
Y KP Q LP +KG++TI A +G GKT + L C + PQ V+
Sbjct 50 YGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQ-----VL 104
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ + +Q + V E +V G + V+++ I+ TP +++
Sbjct 105 ILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDM 164
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+ + ++P+ I +MI DE
Sbjct 165 ITRKSLPTRHI-KMMILDEA 183
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein
1 OS=Mus musculus OX=10090 GN=Chd1 PE=1 SV=3
Length=1711
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (49%), Gaps = 9/107 (8%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + V++++ N +Q + R G
Sbjct 841 RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 900
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL--RLQTWDEAVF 776
K + L + G +E++ + K+KM+ D ++ R+ T + V
Sbjct 901 QKKQVNIYRLVTK-GSVEEDILERAKKKMVLDHLVIQRMDTTGKTVL 946
>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/216 (23%), Positives = 88/216 (41%), Gaps = 59/216 (27%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQEL--------------ESVSR-----------DPSNE 607
N++ DE ++ +T+ F+E++ E+ ++SR DP
Sbjct 168 NIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATLSREVLEVTGKFTTDPVKI 227
Query 608 NPKLEDLCFILQEEYHLNPE----------------TIT--ILFVKTRALVDALKNWIEG 649
K +D+ ++YH+ E TIT ++F T+ V NW+
Sbjct 228 LVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSLTITQAVIFCNTKVKV----NWLTD 283
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
K + + G K ++ + I++ F+ +G+ +LI+T V GID+ Q
Sbjct 284 QMKKANFTVVAMHGDMKQDE--------RDSIMNDFR-TGNSRVLISTDVWARGIDVQQV 334
Query 710 NLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+LVI Y+ N + I GR +G L+T
Sbjct 335 SLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVT 370
>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E K + LC + Y T ++F TR VD L +
Sbjct 227 LVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 282
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + G+ Q + I+ F+ G+ +LI+T V GI
Sbjct 283 KMREANFTVSSMH-------GEMPQK------ERDSIMQDFR-QGNSRVLISTDVWARGI 328
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 329 DVQQVSLVINYDLPSNRENYIHRIGRSGRFGRK 361
>sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1
Length=399
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT--ILFVKTRALVDAL 643
L +R E L+ ++ + E K + LC I + TIT ++F ++ VD
Sbjct 228 LVKRDEITLEGIKQYYVNVEKEEWKFDTLCDIY------DSLTITQCVIFCNSKKKVD-- 279
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
W+ K S +++ G Q+ + +++ F+ +G +LI+T V G
Sbjct 280 --WLAHKLKQSNF--AVISMHGDMKQD------ERDRVMNEFR-TGQSRVLISTDVWARG 328
Query 704 IDIAQCNLVILY---EYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
ID+ Q +LVI Y E N + I GR +G LT KE YK K+
Sbjct 329 IDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRMKEIEKYYKIKV 388
>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702
Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (42%), Gaps = 31/178 (17%)
Query 211 IFYQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCG 269
+ ++E CQ L+ N Y+ P + Y + + L G++ + CA TG G
Sbjct 261 LTFEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIVL---AGRDLMACAQTGSG 310
Query 270 KTFVSLL-ICEHHLK------KFPQGQKGKVVFFA------NQIPVYEQQKSVFSKYFER 316
KT LL I H ++ +F + Q+ + + A NQI E +K F
Sbjct 311 KTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI-YLEARKFSFGTCV-- 367
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R I G T V QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 368 ---RAVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKI-GLKQVKYLVLDEA 421
>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28
PE=3 SV=1
Length=582
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/47 (43%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
SG N+LIAT+VA G+DI LV+ ++ I GR GRA
Sbjct 479 SGTANVLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRA 525
>sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial
OS=Eremothecium gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1
Length=658
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (42%), Gaps = 28/137 (20%)
Query 616 FILQEEYHLNPETITILFVKTRALVD----ALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ ++EE NP+ I+F+ T V+ L++ G P L F +
Sbjct 378 YKIREEASANPKLKAIVFMPTIVAVEYWGELLQSQCRGTPVLLF--------------HG 423
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG------NVIKMI 725
G++ + + F+A D IL+ T VA G+D++ V Y+ VG N I I
Sbjct 424 GLSQGRRNSTMKRFRAM-DSGILVCTDVAARGMDVSDVQHV--YQ-VGVPTSPDNYIHRI 479
Query 726 QTRGRGRARGSKCFLLT 742
GR +GS L
Sbjct 480 GRTGRAGRKGSSTIFLA 496
>sp|Q18AM3|POTA_CLOD6 Spermidine/putrescine import ATP-binding
protein PotA OS=Clostridioides difficile (strain 630) OX=272563
GN=potA PE=3 SV=1
Length=347
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/56 (38%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA---NQIPVYEQQ-KSVFSKY 313
+ P+GCGKT +I F GKV+F N +P YE+Q +VF KY
Sbjct 36 LLGPSGCGKTTTLKIIA-----GFEYADDGKVLFEGKEINNLPPYERQVNTVFQKY 86
>sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC
A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1
Length=406
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 24/112 (21%)
Query 619 QEEYHLNP-----ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+EE+ L+ ET+TI +F TR VD L + KL+ + G Q
Sbjct 247 KEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTD------KLTARDFTVSAMHGDMEQ 300
Query 670 NTGMTLPAQK-CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
AQ+ I+ F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 301 -------AQRDVIMKEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 344
>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/58 (38%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query 688 SGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQTRGRGRARGSKCFLLT 742
SG +LI+T V GID+ Q +LVI Y E + N I I GR +G +T
Sbjct 312 SGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGVAINFIT 369
>sp|Q0W6L1|HELS_METAR ATP-dependent DNA helicase Hel308 OS=Methanocella
arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
OX=351160 GN=hel308 PE=3 SV=1
Length=740
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 114/275 (41%), Gaps = 55/275 (20%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GKN + PT GKT ++ + LK +G GK ++ +P+ + ++
Sbjct 37 LDGKNLLAAIPTASGKTLLAEMAM---LKSIAEG--GKAIYI---VPLKALASEKYDRFL 88
Query 315 E-------RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
E G +V GI AT + ++ + DII+ T + + L+ G LS +
Sbjct 89 EFSKLPIKPDGVKV-GI--ATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGA-SWLSGLS 144
Query 368 LMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD 425
+++ DE H ++ + P + L +K+ + Q++ L+A++G A
Sbjct 145 VVVADEVHLIDSPNRGPTLEVTLAKL-RKINVNL----QILALSATIGNAKA-------- 191
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK------------VESRISDKFK- 472
L +DA+++ + E V Y F+K V S ++D +
Sbjct 192 ----LAKWMDAALVQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPDEVNSLVADTLEE 247
Query 473 ----YIIAQLMRDTESLAKRICKDLENLSQIQNRE 503
+ A + +ES+A+++ + L Q +E
Sbjct 248 GGQCLVFANTRKSSESIAQKVARSLSKKLQPAEKE 282
>sp|A9X4T1|CHD1_BOMMO Chromodomain-helicase-DNA-binding protein
1 OS=Bombyx mori OX=7091 GN=CHD1 PE=1 SV=1
Length=1365
Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query 678 QKCILDAFKASGDHNI--LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K LD F A G + L++T GI++A + VI+++ N +Q + R G
Sbjct 569 RKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIG 628
Query 736 SK----CFLLTSNAGVIEKEQINMYKEKMMNDSIL--RLQTWDEAVFREK 779
K + L + A +E++ + K KM+ D ++ R+ T + V ++
Sbjct 629 QKNQVNIYRLVT-ARSVEEDIVERAKRKMVLDHLVIQRMDTTGKTVLNKR 677
>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3
SV=1
Length=396
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/43 (42%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ I++ F+ SG ILIAT + GID+ Q +LVI Y+ N
Sbjct 300 RDTIMNEFR-SGSSRILIATDLLARGIDVQQVSLVINYDLPAN 341
>sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis
(strain McKiel) OX=293613 GN=uvrB PE=3 SV=1
Length=661
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query 689 GDHNILIATSVADEGIDIAQCNLVILYE-----YVGNVIKMIQTRGRGRARGSK 737
G NIL+ ++ EG+DI +C LV + + ++ + + +IQT GR AR S+
Sbjct 494 GTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRA-ARNSE 546
>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 /
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430
Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 53/178 (30%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query 571 FSNVRAAGFDEIEQD--LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
F N+ A + E+E D R +E+L PSNE K+ L +++EE+ P+
Sbjct 210 FENMNNAEYVEVEPDQKTGHRIKEELFY-------PSNEE-KMRLLQTLIEEEW---PDR 258
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK---CILDAF 685
TI+F T+ + + W G+ + G+LTG AQK ILD F
Sbjct 259 -TIIFANTKHRCEDV--W--GHLAADGHRVGLLTGD-----------VAQKKRLRILDDF 302
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFL 740
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 -TKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISL 359
>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3
SV=1
Length=397
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/57 (39%), Positives = 30/57 (53%), Gaps = 1/57 (2%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
I++ F+ SG +LI+T V GID+ Q +LVI Y+ N I GR G K
Sbjct 305 IMNEFR-SGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRK 360
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 13/120 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399
Score = 33.9 bits (76), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L +R E L+ L+ E+ K + LC + Y T ++F TR VD L +
Sbjct 227 LVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVIFCNTRRKVDWLTD 282
Query 646 WI-EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ E N +S + G+ Q + I+ F+ G+ +LI+T V GI
Sbjct 283 KMREANFTVSSMH-------GEMPQK------ERDSIMQDFR-QGNSRVLISTDVWARGI 328
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
D+ Q +LVI Y+ N I GR G K
Sbjct 329 DVQQVSLVINYDLPVNRENYIHRIGRSGRFGRK 361
>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/98 (32%), Positives = 44/98 (45%), Gaps = 17/98 (17%)
Query 627 ETITI----LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
ET+TI +F TR VD L + KL + G +Q + I+
Sbjct 259 ETVTITQAVIFCNTRRKVDWLTD------KLQARDFTVSAMHGDMDQT------QRDLIM 306
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
F+ SG +LIAT + GID+ Q +LVI Y+ N
Sbjct 307 KEFR-SGSSRVLIATDLLARGIDVQQVSLVINYDLPAN 343
>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1
PE=1 SV=1
Length=399
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQTRGRGRARGSK 737
+++ F+ +G +LI+T V GID+ Q +LVI Y E + N I I GR +G
Sbjct 307 VMNDFR-TGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365
Query 738 CFLLT 742
+T
Sbjct 366 INFIT 370
>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQTRGRGRARGSK 737
+++ F+ +G +LI+T V GID+ Q +LVI Y E + N I I GR +G
Sbjct 307 VMNDFR-TGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVA 365
Query 738 CFLLT 742
+T
Sbjct 366 INFIT 370
>sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1
Length=586
Score = 34.3 bits (77), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 59/124 (48%), Gaps = 10/124 (8%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQ---IPVYEQQ 306
P + GK+ + A TG GKT L+ L P+ G +V + + ++
Sbjct 145 PLLAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVA 204
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ + + + +G + G + E +++ + +++I TP L+++L++G+ ++
Sbjct 205 RELMKNHSQTYGVVIGGANIRAEE----DKLGKGVNLLIATPGRLLDHLRRGSFVFKNLK 260
Query 367 TLMI 370
+L+I
Sbjct 261 SLII 264
>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (5%)
Query 675 LPAQKCI--LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
LP ++ I L F+AS IL+AT VA G+DI + +LVI Y+ + I GR
Sbjct 405 LPQRQRIDNLARFRASA-ARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVGRTA 463
Query 733 ARGSK 737
G K
Sbjct 464 RAGRK 468
>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP3 PE=3 SV=1
Length=592
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 122/332 (37%), Gaps = 73/332 (22%)
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA-----CMVFQMPDKDEESR 533
+R SL K K ++ + RE Q Y+Q + A C+ +P KD +
Sbjct 237 VRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVP-KDPQVA 295
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
C+ + + + ND LI A + +A DY+ DE ++ L + FEE
Sbjct 296 ACRKAHIVVATPGRLND-LIGDGSADLSNA-DYVV----------LDEADRMLDKGFEEP 343
Query 594 LQELESVSRDPSNEN---------PKLEDLCFILQEEYHLNPETITI---------LFVK 635
++++ +S+ P P + DL + ++P ITI V+
Sbjct 344 IRQI--ISQTPKKRQTLMFTATWPPSVRDLA----STFMVSPVRITIGDNQSGELRANVR 397
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI-------LDAFKAS 688
+ LV+ L + L LK +G+ K ++ L ++ + + F+
Sbjct 398 IKQLVEVLDPHAKEQRLLQLLKQ-YQSGKNKDDRILVFCLYKKEAMRIENFIRMKGFRVG 456
Query 689 GDHN--------------------ILIATSVADEGIDIAQCNLVILYEY---VGNVIKMI 725
G H +L+AT VA G+DI LVI + + + I
Sbjct 457 GIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRI 516
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR G T + + IN+ K
Sbjct 517 GRTGRAGKEGLAITFFTEHDKGLSGSLINVLK 548
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508
GN=PRP5 PE=3 SV=1
Length=994
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/43 (40%), Positives = 27/43 (63%), Gaps = 1/43 (2%)
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
N+LIATS+A G+D+ +LV+ +E ++ + GR GRA
Sbjct 698 NVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRA 740
>sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1
Length=397
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/135 (26%), Positives = 63/135 (47%), Gaps = 17/135 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
L ++ E L+ ++ + E+ K + LC + Y T ++F TR+ V+ L
Sbjct 225 LVKKDELTLEGIKQFYINVEQEDYKFDCLC----DLYDSISVTQAVIFCNTRSKVEFLTT 280
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
++G +F I + +++T I++ F+ SG ILI+T + GID
Sbjct 281 KLKGE---NFTVSAIHADLPQADRDT---------IMNEFR-SGSSRILISTDLLARGID 327
Query 706 IAQCNLVILYEYVGN 720
+ Q +LVI Y+ N
Sbjct 328 VQQVSLVINYDLPAN 342
>sp|Q03VW4|GLMM_LEUMM Phosphoglucosamine mutase OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 / DSM
20343 / BCRC 11652 / CCM 1803 / JCM 6124 / NCDO 523 / NBRC 100496
/ NCIMB 8023 / NCTC 12954 / NRRL B-1118 / 37Y) OX=203120
GN=glmM PE=3 SV=1
Length=455
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (46%), Gaps = 7/79 (9%)
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE 494
DA V T HN + KFF ++SD+ +Y I QL+ ++E R D
Sbjct 100 DAGVQITASHNPAADNGI-----KFFGNDGFKLSDQLEYEIEQLLDESEDTLPRPSAD-- 152
Query 495 NLSQIQNREFGTQKYEQWI 513
L + N G QKY +++
Sbjct 153 GLGVVNNYPEGVQKYLEFL 171
>sp|Q4PH16|ATM1_USTMA Iron-sulfur clusters transporter ATM1, mitochondrial
OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631
GN=ATM1 PE=3 SV=1
Length=763
Score = 34.3 bits (77), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (42%), Gaps = 23/103 (22%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL--------YSPFKPRNYQLEL 250
D+E ++ + +ED + PP +VS + Y P +P +
Sbjct 467 DMETMFNLENVNVAVKED--------KNAPPLKVSGGEIRFENVTFGYHPDRPIFRNISF 518
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
+PA G T P+GCGK+ + L L +F + Q GK+
Sbjct 519 TVPA--GYKTAFVGPSGCGKSTIFRL-----LFRFYEPQSGKI 554
>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp8 PE=3 SV=1
Length=540
Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query 675 LPAQKCI--LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
LP ++ I L F+AS IL+AT VA G+DI + LVI Y+ + I GR
Sbjct 400 LPQRQRIDNLGRFRASA-ARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRTA 458
Query 733 ARGSKCFLLT 742
G K +T
Sbjct 459 RAGRKGEAVT 468
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3
PE=3 SV=3
Length=534
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSK 737
L+ FK S NIL+AT VA G+DI ++VI Y+ + I GR GR+ G
Sbjct 400 LNKFK-SNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRS-GKS 457
Query 738 CFLLT 742
L+T
Sbjct 458 ISLIT 462
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6
PE=2 SV=1
Length=604
Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 1/65 (2%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
+K I+ F A+GD N+L+ + + GID+A VI Y+ +V + GR G +
Sbjct 476 RKKIISRF-ATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGRE 534
Query 738 CFLLT 742
F T
Sbjct 535 GFAWT 539
>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (2%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+AS IL+AT VA G+DI +LVI Y+ N + GR G + +
Sbjct 394 LARFRASA-ARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRRGEAV 452
Query 742 T 742
T
Sbjct 453 T 453
>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3
SV=1
Length=438
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/159 (29%), Positives = 72/159 (45%), Gaps = 30/159 (19%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E EQ R +E+L PSNE+ K+ L +++EE+ P+ I+F T+
Sbjct 222 EPEQKTGHRIQEELFY-------PSNEH-KMALLQTLIEEEW---PDR-AIIFANTKHRC 269
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC--ILDAFKASGDHNILIATS 698
+ + + + + G+LTG +P +K IL+ F GD +IL+AT
Sbjct 270 EQIWAHLAADNH----RVGLLTG----------DVPQKKRERILEQF-TQGDVDILVATD 314
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
VA G+ I Q V Y+ + + GR GRA S
Sbjct 315 VAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 353
>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
OX=243277 GN=rhlB PE=3 SV=1
Length=438
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/159 (29%), Positives = 72/159 (45%), Gaps = 30/159 (19%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E EQ R +E+L PSNE+ K+ L +++EE+ P+ I+F T+
Sbjct 222 EPEQKTGHRIQEELFY-------PSNEH-KMALLQTLIEEEW---PDR-AIIFANTKHRC 269
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC--ILDAFKASGDHNILIATS 698
+ + + + + G+LTG +P +K IL+ F GD +IL+AT
Sbjct 270 EQIWAHLAADNH----RVGLLTG----------DVPQKKRERILEQF-TQGDVDILVATD 314
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
VA G+ I Q V Y+ + + GR GRA S
Sbjct 315 VAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 353
>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 46/159 (29%), Positives = 72/159 (45%), Gaps = 30/159 (19%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E EQ R +E+L PSNE+ K+ L +++EE+ P+ I+F T+
Sbjct 222 EPEQKTGHRIQEELFY-------PSNEH-KMALLQTLIEEEW---PDR-AIIFANTKHRC 269
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC--ILDAFKASGDHNILIATS 698
+ + + + + G+LTG +P +K IL+ F GD +IL+AT
Sbjct 270 EQIWAHLAADNH----RVGLLTG----------DVPQKKRERILEQF-TQGDVDILVATD 314
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
VA G+ I Q V Y+ + + GR GRA S
Sbjct 315 VAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 353
>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP8 PE=3 SV=1
Length=431
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (9%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSK 737
L F+A+ +LIAT VA G+DI LVI Y+ + I GR GR+ +
Sbjct 297 LQRFRANA-ARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIHRSGRTARAGRSGDAI 355
Query 738 CFLLTSNAGVIE--KEQIN 754
F+ + IE +E+IN
Sbjct 356 SFVTPRDVSRIEAIEERIN 374
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema
pallidum (strain Nichols) OX=243276 GN=recG PE=3 SV=1
Length=686
Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (8%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN-LVILYEYVGNVIKMIQTR 728
++ MT Q+ I+ F + G +IL+ATSV + G+D+ N +VI + + + Q R
Sbjct 528 HSKMTEEEQQRIMKYF-SEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLR 586
Query 729 GRGRARG---SKCFLLTSN 744
GR RG S CFL+ +
Sbjct 587 GR-VGRGDVQSYCFLMHGD 604
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2
SV=1
Length=708
Score = 34.3 bits (77), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/57 (37%), Positives = 31/57 (54%), Gaps = 2/57 (4%)
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ +L F+ SG IL+AT VA G+DI +V+ Y++ V + GR GRA
Sbjct 463 RDSVLSEFR-SGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRA 518
>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=TIF1 PE=1 SV=3
Length=395
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/48 (42%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query 675 LPAQK--CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
LP Q+ I+ F+ SG ILI+T + GID+ Q +LVI Y+ N
Sbjct 294 LPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPAN 340
>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3
SV=1
Length=395
Score = 33.9 bits (76), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/48 (42%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query 675 LPAQK--CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
LP Q+ I+ F+ SG ILI+T + GID+ Q +LVI Y+ N
Sbjct 294 LPQQERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPAN 340
>sp|O67154|PSTB_AQUAE Phosphate import ATP-binding protein PstB
OS=Aquifex aeolicus (strain VF5) OX=224324 GN=pstB PE=3 SV=1
Length=257
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/54 (30%), Positives = 30/54 (56%), Gaps = 4/54 (7%)
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK--GKVVFFANQI 300
++ P + K T I P+GCGKT +LL C + + +G + G+ + + ++I
Sbjct 26 DITFPVYENKITAIIGPSGCGKT--TLLRCFNRMHDLYEGARYEGEAILYPDEI 77
>sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1
Length=796
Score = 34.3 bits (77), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/187 (24%), Positives = 84/187 (45%), Gaps = 15/187 (8%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSEN-SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
L+ + +S++ I QE P SEN + + + +P QL+ A+KG
Sbjct 198 LQSNVFSSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGH 257
Query 259 NTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVF-----FANQIPVYEQQKSVFSK 312
N + A TG GKT + I E +K + ++F A+Q+ + Q+ V++K
Sbjct 258 NIMGKASTGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQK--VWTK 315
Query 313 YFERHGYRVTGISGATAENVPVEQIVE---NNDIIILTPQILVNNLKKG--TIPSLSIFT 367
+ + Y + ++G + E+I++ + II+ TP + L++ IP +
Sbjct 316 MNKLNKYTILSLTGGLSIQ-KQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKID 374
Query 368 LMIFDEC 374
++ DE
Sbjct 375 TLVLDEA 381
>sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma
brucei brucei OX=5702 GN=HEL64 PE=3 SV=1
Length=568
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (54%), Gaps = 2/52 (4%)
Query 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG-SKCFLLTS 743
L+AT VA G+DI Q VI Y++ + + GR GRA G +C L +
Sbjct 399 LVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGEGRCVYLIT 450
>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (48%), Gaps = 17/122 (14%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE--GNPKLSFLKPGILTGRGKTN 668
L DL +++ +++T++FV+T+ D+L+ ++ +P S
Sbjct 543 LLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSI------------- 589
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ T ++ L F+ SGD IL+AT+VA G+DI VI ++ +V + +
Sbjct 590 -HGDRTQKEREEALRCFR-SGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI 647
Query 729 GR 730
GR
Sbjct 648 GR 649
>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (2%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
L FKA G ILIAT VA G+DI LV+ ++ + I GR G K
Sbjct 299 LHRFKA-GAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGRTARAGRK 353
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666
Score = 33.9 bits (76), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/122 (25%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query 262 ICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
+ APTG GKT ++ + + L + + VV ++ +Q VF+ Y + R
Sbjct 254 VSAPTGSGKTLAFVIPVVQALLSRVVCHIRALVVLPTKEL--AQQVSKVFNIYTDATPLR 311
Query 321 VTGISGATAENVPVEQIVENN--------DIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
V+ ++G + E +V+ DI++ TP LV+++ + SL +I D
Sbjct 312 VSLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIID 371
Query 373 EC 374
E
Sbjct 372 EA 373
>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456
Score = 33.9 bits (76), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/35 (49%), Positives = 23/35 (66%), Gaps = 1/35 (3%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+DAF+ G +LI+T+V GIDI Q LVI Y+
Sbjct 345 IDAFR-DGKSKVLISTNVIARGIDIQQVTLVINYD 378
>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713
Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 31/176 (18%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 275 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIVL---AGRDLMACAQTGSGKT 324
Query 272 FVSLL-ICEHHLK------KFPQGQKGKVVFFA------NQIPVYEQQKSVFSKYFERHG 318
LL I H ++ +F + Q+ + + A NQI E +K F
Sbjct 325 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQI-YLEARKFSFGTCV---- 379
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R I G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 380 -RAVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKI-GLKQVKYLVLDEA 433
>sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp9
PE=3 SV=2
Length=619
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/131 (26%), Positives = 61/131 (47%), Gaps = 8/131 (6%)
Query 251 ALP-AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIP---VYEQ 305
A+P A++GK+ + A TG GKT +L I + L+K K +P + EQ
Sbjct 57 AIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKANDPSLKATTGLILVPTRELAEQ 116
Query 306 QKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
++V + + F R ++ ++ V + + D+I+ TP ++ NL + SL
Sbjct 117 VQNVITTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSAL-SL 175
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 176 ENLTHLVIDEA 186
>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3
PE=3 SV=1
Length=578
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRG 729
M+ A+ L+ FK SG +L+AT VA G+DI + LVI + + + + I G
Sbjct 450 MSQGARLQALNDFK-SGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTG 508
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKE 758
R +G+ T E +N+ ++
Sbjct 509 RANTKGTAITFFTPQDKSHAGELVNVLRQ 537
>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2
SV=2
Length=802
Score = 33.9 bits (76), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/122 (24%), Positives = 51/122 (42%), Gaps = 1/122 (1%)
Query 254 AMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
A+ G++ A TG GKT SL + E L + + +V+ + Q S+ K
Sbjct 228 ALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEK 287
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ R I G + V + DI++ TP ++++L+ L ++I D
Sbjct 288 LAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILD 347
Query 373 EC 374
E
Sbjct 348 EA 349
>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18
OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1
Length=602
Score = 33.9 bits (76), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 10/116 (9%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQ---I 300
Q + LP ++GK+ + A TG GKT L+ L K P+ G ++ + +
Sbjct 146 QAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELAL 205
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+Y + + + + HG + G S E E++ + ++++ TP L+++L+
Sbjct 206 QIYGVARELMKYHTQTHGIVIGGASKKPEE----ERLEKGVNLLVATPGRLLDHLQ 257
>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1
PE=3 SV=2
Length=578
Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/140 (26%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-----ICEHHLKKFPQGQKGKVVFFA 297
P Q E + ++ I CAPTG GKT L+ I ++ K G +G ++
Sbjct 154 PTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKNVSK-NHGIRGLIISPT 212
Query 298 NQIPVYE-QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNN 354
N++ V Q+ + ++ ++ + A+ N I++++ DII+ TP L++
Sbjct 213 NELAVQIFQELEIITRGCKQINVAILSKQLASKLN---NNIIKSSKYDIIVSTPLRLIDV 269
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K+G + LS +I DE
Sbjct 270 VKQGNM-DLSKIEQLIIDEA 288
>sp|Q974S1|HELS_SULTO ATP-dependent DNA helicase Hel308 OS=Sulfurisphaera
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140
/ 7) OX=273063 GN=hel308 PE=1 SV=1
Length=704
Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK ++ +PT GKT LI E + + + GK ++ + ++ + F K +
Sbjct 40 LDGKRLLVTSPTASGKT----LIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF-KDW 94
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G + SG + + +EN DII+ T + L ++L + L+ + + DE
Sbjct 95 ETLGIKTGMTSGDYDTD---DAWLENYDIIVTTYEKL-DSLWRHKAKWLNEVSYFVLDEF 150
Query 375 H 375
H
Sbjct 151 H 151
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947
Score = 33.9 bits (76), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/126 (24%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query 254 AMKGKNTIICAPTGCGKT--FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
A+ G++ I A TG GKT F+ ++ +K Q G + P E + + S
Sbjct 284 ALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIV--CPTRELCQQIHS 341
Query 312 ---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
++ + + R + G + + + E +I++ TP L++++KK +L T
Sbjct 342 ECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKAT-NLQRVTY 400
Query 369 MIFDEC 374
++FDE
Sbjct 401 LVFDEA 406
>sp|Q9FUG4|XPB2_ARATH General transcription and DNA repair factor
IIH helicase subunit XPB2 OS=Arabidopsis thaliana OX=3702
GN=XPB2 PE=2 SV=1
Length=766
Score = 33.9 bits (76), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/57 (37%), Positives = 32/57 (56%), Gaps = 2/57 (4%)
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVI-LYEYVGNVIKMIQTRGR-GRARG 735
IL+AFK S N + + V D IDI + N++I + + G+ + Q GR RA+G
Sbjct 561 ILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 617
>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523
Score = 33.9 bits (76), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/64 (36%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+ FK SG N+L+AT VA G+DI VI + V + + I GR G+
Sbjct 402 LNEFK-SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAH 460
Query 739 FLLT 742
L T
Sbjct 461 TLFT 464
>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720
Score = 33.9 bits (76), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/108 (30%), Positives = 48/108 (44%), Gaps = 14/108 (13%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+FV + + D L + +S + +T G Q + L F+ SG
Sbjct 566 TIVFVAQQKMADTLASI------MSAAQVPAITIHGAREQK------ERSAALKLFR-SG 612
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
+LIAT+V + G+DI + VI Y+ N+ I GR GR S
Sbjct 613 AKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRVGNS 660
>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3
PE=1 SV=2
Length=523
Score = 33.5 bits (75), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/64 (36%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKC 738
L+ FK SG N+L+AT VA G+DI VI + V + + I GR G+
Sbjct 402 LNEFK-SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAH 460
Query 739 FLLT 742
L T
Sbjct 461 TLFT 464
>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8
PE=3 SV=1
Length=526
Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/49 (41%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
L F+AS IL+AT VA G+DI +LVI Y+ N + GR
Sbjct 394 LARFRASA-ARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGR 441
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639
Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query 262 ICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
+ APTG GKT ++ + + L + + VV ++ +Q VF+ Y + R
Sbjct 226 VSAPTGSGKTLAFVIPVVQALLHRVVCHIRALVVLPTKEL--AQQVSKVFNIYTDTTPLR 283
Query 321 VTGISGATAENVPVEQIVENN--------DIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
V ++G + E +V+ DI++ TP LV+++ + SL +I D
Sbjct 284 VALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIID 343
Query 373 EC 374
E
Sbjct 344 EA 345
>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCF 739
L F+A+ +LIAT VA G+DI LV+ Y+ N I GR RA RG +
Sbjct 301 LQRFRANA-ARVLIATDVASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEAL 359
>sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp9 PE=3 SV=1
Length=610
Score = 33.5 bits (75), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (44%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKF---PQGQKGKVVFFA 297
KP Q + A++GK+ + A TG GKT +L I + L+K P + +
Sbjct 50 KPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILV 109
Query 298 NQIPVYEQQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ EQ + V + + F R ++ ++ V + + DI++ TP ++ NL
Sbjct 110 PTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVSDAVQKAMLADYPDIVVSTPARVIANL 169
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL T ++ DE
Sbjct 170 GTSAL-SLENLTHLVIDEA 187
Lambda K H a alpha
0.319 0.136 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 107032214436
Results from round 2
Query= sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RIG-I
OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Sequences used in model and found again:
sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor RI... 1341 0.0
sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor RI... 1244 0.0
sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor RIG-... 1211 0.0
sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-contai... 806 0.0
sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-contai... 736 0.0
sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus mus... 624 0.0
sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo sa... 602 0.0
sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergill... 467 5e-147
sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri... 466 3e-143
sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus ... 464 2e-142
sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatu... 463 3e-142
sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus... 461 2e-141
sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergill... 448 1e-139
sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergill... 445 1e-138
sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergill... 443 4e-138
sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergill... 443 4e-138
sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergill... 440 4e-137
sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartor... 439 1e-136
sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (... 446 5e-136
sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (s... 446 9e-136
sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri... 443 2e-135
sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatu... 438 5e-134
sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus... 422 5e-128
sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis... 419 3e-126
sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus ... 409 2e-123
sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza ... 413 3e-123
sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (... 409 3e-123
sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasi... 406 1e-121
sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioi... 398 5e-121
sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodoru... 404 1e-120
sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidop... 399 2e-119
sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomiu... 391 2e-118
sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidop... 399 9e-118
sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger... 391 8e-117
sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospor... 386 2e-116
sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricular... 385 3e-116
sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallu... 395 4e-116
sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotin... 387 4e-116
sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotin... 386 8e-116
sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodoru... 387 2e-115
sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans ... 386 1e-114
sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae (... 387 1e-114
sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasi... 386 3e-114
sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa (s... 385 1e-113
sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapi... 387 2e-113
sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis... 378 9e-112
sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae (... 379 2e-111
sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosac... 365 2e-111
sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog OS=M... 380 4e-111
sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza ... 376 4e-110
sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sa... 372 1e-108
sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sa... 372 2e-108
sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2 OS=... 354 9e-108
sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana... 369 1e-107
sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm O... 367 2e-107
sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa (s... 364 2e-106
sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum ... 364 3e-106
sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza ... 357 3e-104
sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza ... 354 2e-103
sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseu... 352 2e-101
sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens OX=9... 349 2e-100
sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus OX=1... 348 3e-100
sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=991... 347 6e-100
sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=79... 343 2e-98
sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicali... 342 3e-98
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffers... 334 7e-98
sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus OX=... 337 2e-96
sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM O... 333 4e-96
sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (... 330 4e-95
sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger... 330 4e-95
sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida a... 326 3e-94
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 ... 317 5e-94
sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomy... 320 1e-92
sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidop... 319 9e-91
sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwal... 310 2e-89
sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis ele... 314 2e-88
sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharom... 297 4e-85
sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharom... 293 7e-84
sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanog... 289 2e-80
sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida g... 283 8e-80
sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothec... 281 8e-79
sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyverom... 275 2e-77
sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanog... 163 1e-39
sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 124 3e-28
sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosac... 123 1e-27
sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Ar... 121 4e-27
sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment... 114 4e-27
sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B OS=... 120 1e-26
sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberell... 119 1e-26
sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex su... 116 5e-25
sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex su... 116 9e-25
sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subu... 115 1e-24
sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methano... 112 3e-24
sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex su... 113 4e-24
sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosacch... 112 1e-23
sp|Q9YFQ8|HELS_AERPE ATP-dependent DNA helicase Hel308 OS=Aeropyr... 107 1e-22
sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherich... 104 4e-22
Sequences not found previously or not previously below threshold:
sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=... 123 9e-28
sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabid... 117 7e-27
sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicoti... 117 9e-27
sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicoti... 117 1e-26
sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomiu... 119 1e-26
sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicot... 116 2e-26
sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Or... 118 3e-26
sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicot... 116 3e-26
sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotin... 117 4e-26
sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Ar... 118 4e-26
sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotin... 117 5e-26
sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospor... 117 5e-26
sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabid... 115 6e-26
sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricular... 117 6e-26
sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabid... 114 7e-26
sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicot... 114 7e-26
sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Ar... 117 7e-26
sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicoti... 114 8e-26
sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays ... 114 1e-25
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza ... 114 1e-25
sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergill... 116 1e-25
sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyverom... 113 1e-25
sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza ... 114 1e-25
sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyc... 115 2e-25
sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartor... 115 2e-25
sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeospha... 116 2e-25
sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericell... 115 2e-25
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicoti... 113 2e-25
sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergill... 115 3e-25
sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergill... 116 3e-25
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum ... 112 3e-25
sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomiu... 115 3e-25
sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricular... 115 3e-25
sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicot... 112 4e-25
sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergill... 114 5e-25
sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartor... 115 5e-25
sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomiu... 112 5e-25
sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospor... 114 6e-25
sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergill... 114 6e-25
sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergill... 114 6e-25
sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergill... 113 7e-25
sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberell... 114 8e-25
sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospo... 111 8e-25
sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericell... 114 9e-25
sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex su... 115 9e-25
sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergill... 111 1e-24
sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberell... 111 1e-24
sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotin... 114 1e-24
sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharom... 115 1e-24
sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotin... 111 1e-24
sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergill... 111 1e-24
sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergill... 110 1e-24
sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericell... 110 1e-24
sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergill... 110 1e-24
sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergill... 110 2e-24
sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartor... 110 2e-24
sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhab... 110 2e-24
sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioi... 110 2e-24
sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricular... 110 2e-24
sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwal... 110 2e-24
sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioi... 112 2e-24
sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotin... 110 2e-24
sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothec... 110 2e-24
sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyc... 111 2e-24
sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergill... 112 2e-24
sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago ... 112 2e-24
sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotin... 112 3e-24
sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex su... 114 3e-24
sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyverom... 112 3e-24
sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex su... 113 4e-24
sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia ... 111 4e-24
sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioi... 112 4e-24
sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococ... 109 5e-24
sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococ... 109 5e-24
sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 O... 111 5e-24
sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Dros... 108 6e-24
sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 O... 111 7e-24
sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog O... 108 8e-24
sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothec... 111 8e-24
sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergill... 110 1e-23
sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicoti... 107 1e-23
sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=... 110 2e-23
sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=... 110 2e-23
sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=... 110 2e-23
sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=... 110 2e-23
sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida g... 109 2e-23
sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A OS=... 109 2e-23
sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyoste... 107 2e-23
sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus ... 107 3e-23
sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago ... 106 3e-23
sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus... 107 3e-23
sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus sc... 107 3e-23
sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Maca... 107 3e-23
sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo... 107 3e-23
sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos ... 107 3e-23
sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xeno... 107 3e-23
sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeospha... 106 3e-23
sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salm... 106 3e-23
sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xe... 106 3e-23
sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia ... 109 4e-23
sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida g... 108 4e-23
sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog... 106 4e-23
sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taen... 106 4e-23
sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosac... 106 4e-23
sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gall... 106 4e-23
sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xe... 106 4e-23
sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog... 106 4e-23
sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyc... 109 4e-23
sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=... 108 5e-23
sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophil... 109 5e-23
sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozym... 106 6e-23
sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH ... 107 6e-23
sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia ... 105 7e-23
sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharom... 105 8e-23
sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharom... 105 8e-23
sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila... 108 8e-23
sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Ar... 105 9e-23
sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14 ... 109 1e-22
sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomy... 105 1e-22
sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Dani... 104 1e-22
sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida a... 106 2e-22
sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida g... 104 2e-22
sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwal... 106 2e-22
sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffers... 104 2e-22
sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Or... 105 2e-22
sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharom... 106 2e-22
sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharom... 106 2e-22
sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomy... 104 2e-22
sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptospo... 104 3e-22
sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococ... 106 4e-22
sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococ... 106 4e-22
sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharom... 105 4e-22
sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharom... 105 4e-22
sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago ... 104 6e-22
sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothec... 104 7e-22
sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 104 7e-22
sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptoc... 104 7e-22
sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozym... 104 7e-22
sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomy... 104 8e-22
sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosac... 104 9e-22
sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12 ... 106 9e-22
sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida a... 102 1e-21
sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13 ... 105 1e-21
sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffers... 104 1e-21
sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococ... 104 1e-21
sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo sa... 104 1e-21
sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus mus... 103 2e-21
sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan tro... 103 2e-21
sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomy... 103 2e-21
sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo a... 103 2e-21
sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=X... 103 2e-21
sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida g... 103 2e-21
sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomy... 102 2e-21
sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyverom... 102 2e-21
sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo sa... 103 3e-21
sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17 O... 103 3e-21
sp|P53327|SLH1_YEAST RQC trigger complex helicase SLH1 OS=Sacchar... 104 3e-21
sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10 OS... 102 4e-21
sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus mus... 102 4e-21
sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida a... 102 4e-21
sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Ar... 101 9e-21
sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Ar... 100 9e-21
sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococ... 101 9e-21
sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida a... 99.9 1e-20
sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Di... 102 1e-20
sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa h... 102 1e-20
sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyverom... 99.5 1e-20
sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephal... 98.7 1e-20
sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helica... 101 1e-20
sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4 OS=... 101 2e-20
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Or... 101 2e-20
sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helica... 101 2e-20
sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa h... 101 2e-20
sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago... 98.3 2e-20
sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa h... 101 2e-20
sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helica... 101 2e-20
sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Su... 100 3e-20
sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4 OS=... 99.9 3e-20
sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4 OS=... 99.9 3e-20
sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus muscu... 99.9 3e-20
sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa h... 101 3e-20
sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa hel... 101 3e-20
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozym... 99.1 4e-20
sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharom... 99.5 4e-20
sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharom... 99.5 4e-20
sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria ... 98.3 4e-20
sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helica... 100 4e-20
sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptoco... 97.2 4e-20
sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptoco... 97.2 4e-20
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorha... 99.9 5e-20
sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothec... 97.5 5e-20
sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4 OS=... 99.1 6e-20
sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helica... 99.9 6e-20
sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryz... 97.9 7e-20
sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3 OS=... 99.1 7e-20
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorha... 99.1 8e-20
sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryz... 98.3 8e-20
sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helica... 99.1 8e-20
sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca... 96.4 9e-20
sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallu... 96.4 1e-19
sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macac... 96.4 1e-19
sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment... 96.0 1e-19
sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus ... 96.0 1e-19
sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo... 96.0 1e-19
sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus m... 96.0 1e-19
sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo ... 96.0 1e-19
sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos t... 96.0 1e-19
sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Or... 97.5 1e-19
sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (stra... 96.8 2e-19
sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helica... 98.3 2e-19
sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus mu... 95.6 2e-19
sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo s... 95.6 2e-19
sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos ta... 95.6 2e-19
sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex su... 98.7 2e-19
sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan tr... 95.6 2e-19
sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo ... 95.6 2e-19
sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arab... 96.8 2e-19
sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococ... 97.2 3e-19
sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus ... 97.5 3e-19
sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sa... 97.5 3e-19
sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo a... 97.5 3e-19
sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Ar... 95.6 3e-19
sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomy... 94.5 3e-19
sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53, mito... 96.8 3e-19
sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophil... 94.9 3e-19
sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomi... 94.9 3e-19
sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragmen... 94.1 3e-19
sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helica... 97.2 3e-19
sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosph... 94.5 4e-19
sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosa... 94.5 4e-19
sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helica... 97.2 4e-19
sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helica... 97.2 4e-19
sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helica... 96.8 4e-19
sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helica... 97.2 4e-19
sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera ... 96.0 4e-19
sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanell... 94.9 4e-19
sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669 O... 93.7 4e-19
sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Or... 96.4 5e-19
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloro... 96.4 5e-19
sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryoti... 94.1 5e-19
sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospo... 94.1 5e-19
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helica... 96.8 5e-19
sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Scleroti... 94.1 5e-19
sp|Q0W6L1|HELS_METAR ATP-dependent DNA helicase Hel308 OS=Methano... 96.0 6e-19
sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helica... 96.8 6e-19
sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermoc... 96.4 6e-19
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helica... 96.4 6e-19
sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus mus... 96.4 6e-19
sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffers... 94.5 6e-19
sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Ar... 95.6 6e-19
sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricula... 93.7 6e-19
sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA OS=... 94.9 7e-19
sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA OS=... 94.9 8e-19
sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia... 94.5 8e-19
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloro... 95.6 9e-19
sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA OS=... 94.5 9e-19
sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 O... 95.2 9e-19
sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomy... 93.7 1e-18
sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helica... 95.6 1e-18
sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helica... 95.6 1e-18
sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergil... 92.9 1e-18
sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergill... 94.1 1e-18
sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicas... 94.9 1e-18
sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Ar... 94.9 1e-18
sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia ... 94.5 1e-18
sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidio... 92.9 1e-18
sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicas... 94.5 1e-18
sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase 3B, ... 94.9 1e-18
sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA OS=... 94.1 1e-18
sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA OS=... 94.1 1e-18
sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA OS=... 94.1 1e-18
sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Ra... 94.9 1e-18
sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergil... 92.9 1e-18
sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA OS=... 94.1 1e-18
sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4 OS=... 94.9 1e-18
sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotin... 93.7 1e-18
sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorha... 94.9 1e-18
sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida a... 94.1 1e-18
sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergil... 92.9 2e-18
sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergil... 92.5 2e-18
sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozym... 92.9 2e-18
sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergil... 92.5 2e-18
sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methano... 94.5 2e-18
sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidio... 93.3 2e-18
sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helica... 94.9 2e-18
sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericel... 92.2 2e-18
sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methano... 94.5 2e-18
sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helica... 94.9 2e-18
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10... 94.1 2e-18
sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosarto... 92.2 2e-18
sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methano... 94.5 2e-18
sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwal... 92.2 2e-18
sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococ... 93.3 3e-18
sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococ... 93.3 3e-18
sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomi... 92.9 3e-18
sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Or... 93.7 3e-18
sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicas... 92.9 3e-18
sp|O60072|SLH1_SCHPO RQC trigger complex helicase slh1 OS=Schizos... 94.1 4e-18
sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methano... 93.3 4e-18
sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophi... 92.9 4e-18
sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia ... 91.8 4e-18
sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomy... 91.8 4e-18
sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago... 92.5 4e-18
sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeospha... 92.5 5e-18
sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomy... 92.2 5e-18
sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera ... 92.5 5e-18
sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotin... 92.2 6e-18
sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimi... 91.0 6e-18
sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methano... 93.3 6e-18
sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicas... 91.8 6e-18
sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase 3A, ... 92.9 6e-18
sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyc... 91.8 6e-18
sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephali... 91.8 7e-18
sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methano... 92.5 7e-18
sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophil... 92.2 7e-18
sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericell... 91.4 8e-18
sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicas... 92.5 8e-18
sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicas... 92.5 8e-18
sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharom... 90.6 8e-18
sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharom... 90.6 8e-18
sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Ar... 92.5 9e-18
sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromo... 90.6 9e-18
sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helic... 92.5 9e-18
sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericell... 91.0 9e-18
sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalt... 90.2 1e-17
sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia... 90.2 1e-17
sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotin... 91.0 1e-17
sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosac... 90.6 1e-17
sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffer... 91.0 1e-17
sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera ... 91.4 1e-17
sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus... 92.2 1e-17
sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorha... 91.8 1e-17
sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Try... 91.4 1e-17
sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophil... 90.2 1e-17
sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergill... 90.6 1e-17
sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibri... 90.2 1e-17
sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanell... 89.8 2e-17
sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=... 90.2 2e-17
sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanell... 89.8 2e-17
sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberell... 91.0 2e-17
sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeo... 91.4 2e-17
sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanell... 89.8 2e-17
sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicas... 90.6 2e-17
sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanell... 89.5 2e-17
sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitoch... 90.6 2e-17
sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherich... 90.6 2e-17
sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47 O... 90.2 2e-17
sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella ... 90.6 2e-17
sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherich... 90.6 2e-17
sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherich... 90.6 2e-17
sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helica... 91.4 2e-17
sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis g... 89.1 3e-17
sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomy... 89.8 3e-17
sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffers... 89.8 3e-17
sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberell... 90.2 3e-17
sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanell... 89.1 3e-17
sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltone... 89.1 3e-17
sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos ta... 89.5 3e-17
sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago ... 89.1 3e-17
sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosa... 91.0 3e-17
sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.... 89.5 3e-17
sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas... 89.1 3e-17
sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartor... 89.5 3e-17
sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanell... 89.1 3e-17
sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyvero... 89.5 3e-17
sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo s... 89.5 3e-17
sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA OS=... 89.5 3e-17
sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibri... 88.7 4e-17
sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibri... 88.7 4e-17
sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida g... 88.7 4e-17
sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergill... 89.5 4e-17
sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-li... 90.2 4e-17
sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharom... 89.1 4e-17
sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharom... 89.1 4e-17
sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergill... 89.1 4e-17
sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwa... 89.1 4e-17
sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo s... 89.1 4e-17
sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophil... 88.3 4e-17
sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartor... 89.1 4e-17
sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 89.1 4e-17
sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptoco... 89.1 4e-17
sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida ... 87.9 5e-17
sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophil... 88.3 5e-17
sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobac... 88.3 5e-17
sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanell... 88.3 5e-17
sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanell... 88.3 5e-17
sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanell... 88.3 5e-17
sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanell... 88.3 5e-17
sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA OS=... 89.1 5e-17
sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA OS=... 89.1 5e-17
sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helica... 89.8 5e-17
sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobact... 88.3 5e-17
sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyverom... 88.7 5e-17
sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeospha... 88.7 6e-17
sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Ar... 88.7 6e-17
sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericell... 88.7 6e-17
sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanell... 87.9 6e-17
sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanell... 87.9 6e-17
sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 6e-17
sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotin... 88.7 7e-17
sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 7e-17
sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricular... 88.3 7e-17
sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA OS=... 88.7 7e-17
sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida a... 88.7 7e-17
sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus mu... 88.3 7e-17
sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicas... 89.1 7e-17
sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Scleroti... 88.3 7e-17
sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospo... 89.5 8e-17
sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida ... 88.3 8e-17
sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiell... 89.1 8e-17
sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergill... 87.9 8e-17
sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothec... 87.9 8e-17
sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida a... 88.7 9e-17
sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergill... 87.9 9e-17
sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida g... 87.9 1e-16
sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicas... 88.3 1e-16
sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurosp... 87.9 1e-16
sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharo... 87.9 1e-16
sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberell... 87.5 1e-16
sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergill... 87.5 1e-16
sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffer... 86.8 1e-16
sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio ch... 87.1 1e-16
sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio ch... 87.1 1e-16
sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio ch... 87.1 1e-16
sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus ... 87.5 1e-16
sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberel... 87.5 1e-16
sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergill... 87.5 1e-16
sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas... 86.8 1e-16
sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioi... 87.5 1e-16
sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothe... 87.5 1e-16
sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffers... 87.5 1e-16
sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobact... 86.8 1e-16
sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozy... 86.4 2e-16
sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergil... 86.8 2e-16
sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhab... 86.8 2e-16
sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanell... 86.8 2e-16
sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanell... 86.8 2e-16
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Ar... 87.9 2e-16
sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus ... 87.1 2e-16
sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergill... 87.1 2e-16
sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergil... 86.8 2e-16
sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio at... 86.4 2e-16
sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52 O... 87.5 2e-16
sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanell... 86.4 2e-16
sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozym... 87.1 2e-16
sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricula... 87.1 2e-16
sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomy... 86.8 2e-16
sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia ... 86.4 2e-16
sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharo... 86.8 2e-16
sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiell... 86.0 3e-16
sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanell... 86.4 3e-16
sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosac... 87.1 3e-16
sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharo... 85.6 3e-16
sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharo... 85.6 3e-16
sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosarto... 86.4 3e-16
sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozym... 86.8 3e-16
sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococ... 87.1 3e-16
sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanell... 86.0 3e-16
sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria ... 86.8 3e-16
sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago ... 86.8 3e-16
sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergil... 86.4 3e-16
sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococ... 86.8 3e-16
sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Or... 86.0 3e-16
sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Or... 86.0 3e-16
sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophil... 85.6 3e-16
sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia t... 85.6 3e-16
sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52 O... 86.8 4e-16
sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryom... 86.0 4e-16
sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomy... 86.4 4e-16
sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryoti... 86.0 4e-16
sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherich... 85.6 4e-16
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergill... 86.4 4e-16
sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozym... 86.0 4e-16
sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase... 86.4 4e-16
sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomon... 85.2 4e-16
sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA OS=... 86.0 4e-16
sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyvero... 85.2 4e-16
sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosac... 86.0 4e-16
sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergil... 86.0 4e-16
sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharom... 86.0 4e-16
sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helica... 87.1 4e-16
sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomy... 86.0 4e-16
sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomon... 84.8 5e-16
sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52 OS=... 86.4 5e-16
sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeospha... 86.0 5e-16
sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharom... 86.0 5e-16
sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio vu... 85.2 5e-16
sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryom... 84.8 5e-16
sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo sa... 85.6 5e-16
sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 O... 86.4 5e-16
sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio vu... 85.2 5e-16
sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helica... 86.8 5e-16
sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderom... 84.8 5e-16
sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothec... 86.0 6e-16
sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergil... 85.2 6e-16
sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanell... 85.2 6e-16
sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophil... 84.8 6e-16
sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23 O... 86.4 6e-16
sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosph... 85.6 6e-16
sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarin... 84.8 6e-16
sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella ... 84.8 6e-16
sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherich... 84.8 6e-16
sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicas... 86.0 7e-16
sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23 O... 86.4 7e-16
sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio ca... 84.8 7e-16
sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiell... 84.8 7e-16
sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Ar... 85.2 7e-16
sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52 O... 85.6 7e-16
sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus m... 84.8 7e-16
sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia ... 85.6 7e-16
sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio pa... 84.8 8e-16
sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacte... 85.6 8e-16
sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacte... 85.6 8e-16
sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicas... 85.6 8e-16
sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosa... 84.8 8e-16
sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia ... 84.5 8e-16
sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA OS=... 85.2 8e-16
sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergill... 85.2 8e-16
sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Dros... 85.6 8e-16
sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwa... 84.1 9e-16
sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobac... 84.5 9e-16
sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49 O... 84.8 1e-15
sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotin... 85.2 1e-15
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozym... 85.6 1e-15
sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonell... 84.1 1e-15
sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobact... 84.1 1e-15
sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Or... 84.8 1e-15
sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 O... 85.2 1e-15
sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA OS=... 84.8 1e-15
sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobact... 84.1 1e-15
sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 O... 85.2 1e-15
sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida g... 84.8 1e-15
sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=... 85.2 1e-15
sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococ... 84.8 1e-15
sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricular... 85.2 1e-15
sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozy... 84.5 1e-15
sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida ... 83.7 1e-15
sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus no... 84.5 1e-15
sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioi... 84.5 1e-15
sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Or... 85.2 1e-15
sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergill... 84.5 2e-15
sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococ... 84.8 2e-15
sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobact... 83.7 2e-15
sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyc... 84.1 2e-15
sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49 O... 84.1 2e-15
sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus mus... 84.1 2e-15
sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Ar... 84.5 2e-15
sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas... 83.7 2e-15
sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomiu... 84.1 2e-15
sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos tau... 84.1 2e-15
sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomon... 83.3 2e-15
sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomon... 83.3 2e-15
sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomon... 83.3 2e-15
sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffers... 84.1 2e-15
sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Or... 84.8 2e-15
sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomy... 84.1 2e-15
sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Ar... 84.5 2e-15
sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Or... 83.3 2e-15
sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Or... 83.3 2e-15
sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicas... 84.5 2e-15
sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomy... 83.7 3e-15
sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetom... 84.5 3e-15
sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilac... 83.7 3e-15
sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwal... 83.7 3e-15
sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurel... 82.9 3e-15
sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibbere... 84.5 3e-15
sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611 ... 84.5 3e-15
sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago ... 84.5 3e-15
sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophil... 82.5 3e-15
sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia ... 82.9 3e-15
sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothec... 83.7 4e-15
sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotin... 83.3 4e-15
sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococ... 83.7 4e-15
sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococ... 83.7 4e-15
sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melan... 82.5 4e-15
sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergill... 82.9 4e-15
sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA OS=... 82.9 4e-15
sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Ar... 83.7 4e-15
sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49 O... 82.5 5e-15
sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericel... 82.5 5e-15
sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicas... 83.7 5e-15
sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospo... 83.3 5e-15
sp|D3Z4R1|HFM1_MOUSE Probable ATP-dependent DNA helicase HFM1 OS=... 84.1 5e-15
sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida ... 82.9 5e-15
sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase... 82.9 5e-15
sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helica... 83.7 5e-15
sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A OS=... 81.8 5e-15
sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothe... 81.8 5e-15
sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Ar... 82.1 6e-15
sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Ar... 82.1 6e-15
sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA OS=... 82.5 6e-15
sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Or... 83.3 6e-15
sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Or... 83.3 6e-15
sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwal... 82.9 6e-15
sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arab... 82.1 7e-15
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Ar... 83.3 8e-15
sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerot... 82.9 8e-15
sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherich... 81.8 8e-15
sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomon... 82.1 8e-15
sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomon... 82.1 8e-15
sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomon... 82.1 8e-15
sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomon... 82.1 8e-15
sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharom... 82.9 8e-15
sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharom... 82.9 8e-15
sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27 O... 82.5 8e-15
sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomiu... 82.1 9e-15
sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffers... 82.1 9e-15
sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=... 81.0 9e-15
sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA OS=... 81.8 1e-14
sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomy... 82.5 1e-14
sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomon... 81.8 1e-14
sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricular... 81.8 1e-14
sp|Q5UYM9|HELS_HALMA ATP-dependent DNA helicase Hel308 OS=Haloarc... 82.1 1e-14
sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizos... 82.1 1e-14
sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A OS=... 80.6 1e-14
sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A OS=... 80.6 1e-14
sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A OS=... 80.6 1e-14
sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida g... 82.1 1e-14
sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 O... 82.1 1e-14
sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosacchar... 82.5 1e-14
sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia ... 81.8 2e-14
sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyos... 81.0 2e-14
sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus... 81.0 2e-14
sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicas... 81.8 2e-14
sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherich... 80.6 2e-14
sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospo... 80.6 2e-14
sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47 O... 80.6 2e-14
sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellom... 81.8 2e-14
sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioi... 81.0 2e-14
sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicas... 81.4 2e-14
sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 O... 81.0 2e-14
sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicas... 81.4 2e-14
sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47 O... 80.2 3e-14
sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47 O... 80.2 3e-14
sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicas... 81.0 3e-14
sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicas... 81.0 3e-14
sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella f... 80.6 3e-14
sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyverom... 80.2 3e-14
sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicas... 81.0 3e-14
sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=... 80.6 3e-14
sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosoph... 80.2 3e-14
sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosac... 80.6 3e-14
sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28 O... 80.2 3e-14
sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Ar... 80.2 4e-14
sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Or... 80.6 4e-14
sp|Q97AI2|HELS_THEVO ATP-dependent DNA helicase Hel308 OS=Thermop... 80.2 4e-14
sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicas... 80.6 4e-14
sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52 O... 80.2 4e-14
sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomon... 79.8 5e-14
sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicas... 80.2 5e-14
>sp|O95786|RIGI_HUMAN Antiviral innate immune response receptor
RIG-I OS=Homo sapiens OX=9606 GN=RIGI PE=1 SV=2
Length=925
Score = 1341 bits (3471), Expect = 0.0, Method: Composition-based stats.
Identities = 925/925 (100%), Positives = 925/925 (100%), Gaps = 0/925 (0%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF
Sbjct 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP
Sbjct 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN
Sbjct 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
Query 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP
Sbjct 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSP 240
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI
Sbjct 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI
Sbjct 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT
Sbjct 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR
Sbjct 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
Query 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL
Sbjct 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFL 540
Query 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV
Sbjct 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI
Sbjct 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN
Sbjct 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI
Sbjct 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
Query 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE
Sbjct 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKE 840
Query 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG
Sbjct 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATG 900
Query 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
VQTLYSKWKDFHFEKIPFDPAEMSK
Sbjct 901 VQTLYSKWKDFHFEKIPFDPAEMSK 925
>sp|Q6Q899|RIGI_MOUSE Antiviral innate immune response receptor
RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2
Length=926
Score = 1244 bits (3219), Expect = 0.0, Method: Composition-based stats.
Identities = 713/925 (77%), Positives = 804/925 (87%), Gaps = 1/925 (0%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MT EQR++LQAF+DYI+K LDPTYILSYM+ W +EEVQYIQAEKNNKGPMEAA+LFL++
Sbjct 1 MTAEQRQNLQAFRDYIKKILDPTYILSYMSSWLEDEEVQYIQAEKNNKGPMEAASLFLQY 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LL+LQ EGWF+ FLDAL HAGY GL EAIESWDF+KIEKLEE+RLLL+RL+PEFK + P
Sbjct 61 LLKLQSEGWFQAFLDALYHAGYCGLCEAIESWDFQKIEKLEEHRLLLRRLEPEFKATVDP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
DI+S+LSECLINQECEEI QI TKG MAGAEK+ ECL+RSDKENWPK L+LALEK+ +
Sbjct 121 NDILSELSECLINQECEEIRQIRDTKGRMAGAEKMAECLIRSDKENWPKVLQLALEKDNS 180
Query 181 KFSELWIVEKGIKDVETE-DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYS 239
KFSELWIV+KG K E++ D +D E S IQIF QE+PECQNLS+N PPSE S NL+S
Sbjct 181 KFSELWIVDKGFKRAESKADEDDGAEASSIQIFIQEEPECQNLSQNPGPPSEASSNNLHS 240
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
P KPRNYQLELALPA KGKNTIICAPTGCGKTFVSLLICEHHLKKFP GQKGKVVFFANQ
Sbjct 241 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 300
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
IPVYEQQ +VFS+YFER GY + ISGAT+++V V+ I+E+NDIIILTPQILVNNL G
Sbjct 301 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA 360
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
IPSLS+FTLMIFDECHNTSK HPYN IMF YLD KLG S PLPQV+GLTASVGVGDAK
Sbjct 361 IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKT 420
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+EA+ +ICKLCA+LDASVIATV+ N+ ELEQVVYKPQK RKV SR S+ FK II+QLM
Sbjct 421 AEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 480
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
++TE LAK + ++L L QIQNREFGTQKYEQWIV V KAC VFQM DK+EESR+CKALF
Sbjct 481 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALF 540
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
LYTSHLRKYNDALIISE A+M DAL+YLK FF +VR A FDE E++LT+RFEEKL+ELE
Sbjct 541 LYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEK 600
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
VSRDPSNENPKL DL +LQEEYHL PET TILFVKTRALVDALK WIE NP LSFLKPG
Sbjct 601 VSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 660
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
ILTGRG+TN+ TGMTLPAQKC+L+AF+ASGD+NILIATSVADEGIDIA+CNLVILYEYVG
Sbjct 661 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 720
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
NVIKMIQTRGRGRAR SKCFLLTS+A VIEKE+ NM KEK+MN+SILRLQTWDE F +
Sbjct 721 NVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWDEMKFGKT 780
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK 839
+ IQ +EK +RDSQ KP+PVPDKENKKLLC KCK ACYTAD+RV+E HYTVLGDAFK
Sbjct 781 VHRIQVNEKLLRDSQHKPQPVPDKENKKLLCGKCKNFACYTADIRVVETSHYTVLGDAFK 840
Query 840 ECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIAT 899
E FV +PHPKPK + +FEK+AKIFCA+QNCSHDWGI V+YKTFEIPVIKIESFVVEDI +
Sbjct 841 ERFVCKPHPKPKIYDNFEKKAKIFCAKQNCSHDWGIFVRYKTFEIPVIKIESFVVEDIVS 900
Query 900 GVQTLYSKWKDFHFEKIPFDPAEMS 924
GVQ +SKWKDFHFE+I FDPAEMS
Sbjct 901 GVQNRHSKWKDFHFERIQFDPAEMS 925
>sp|Q9GLV6|RIGI_PIG Antiviral innate immune response receptor
RIG-I OS=Sus scrofa OX=9823 GN=RIGI PE=2 SV=1
Length=940
Score = 1211 bits (3133), Expect = 0.0, Method: Composition-based stats.
Identities = 732/930 (79%), Positives = 828/930 (89%), Gaps = 9/930 (1%)
Query 1 MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKF 60
MT EQRR+L AF DY+RKTLDPT+ILSYMAPWFR++EVQ+IQAEKNNKGP EAA+LFL+F
Sbjct 1 MTAEQRRNLHAFGDYVRKTLDPTFILSYMAPWFRDDEVQHIQAEKNNKGPTEAASLFLQF 60
Query 61 LLELQEEGWFRGFLDALDHAGYSGLYEAIESWDFKKIEKLEEYRLLLKRLQPEFKTRIIP 120
LLELQEEGWFRGFLDAL+ AGY GL EAIESWDF+KIEKLEEYR LL+RLQPEFKT I P
Sbjct 61 LLELQEEGWFRGFLDALNQAGYCGLCEAIESWDFQKIEKLEEYRSLLRRLQPEFKTTINP 120
Query 121 TDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 180
DI+ +++ECLI+QECEEILQICS+KG+MAGAEK+VECLLRSDKENWPKTLKLALEKE +
Sbjct 121 KDILPEIAECLISQECEEILQICSSKGLMAGAEKMVECLLRSDKENWPKTLKLALEKEES 180
Query 181 KFSELWIVEKGIKDVETEDLED-KMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYS 239
+FSELW+V+KG +DV+ +DLED +M+T D+QIFY+E+PE QNLS+NSC S + YS
Sbjct 181 RFSELWMVDKGAEDVKMKDLEDDEMKTCDVQIFYKEEPENQNLSQNSCSSSA---PHTYS 237
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
P KPR YQLELALPA GKNTIICAPTGCGKTFVSLLICEHHLKKFP+G+KGKVVFFA Q
Sbjct 238 PLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQ 297
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+PVYEQQKSVFSK+FER GY+V GISGAT++ V VEQIVEN+DIIILTPQILVN L GT
Sbjct 298 LPVYEQQKSVFSKHFERLGYKVAGISGATSDTVCVEQIVENSDIIILTPQILVNCLTNGT 357
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
IPSLS+FTLMIFDECHNTSKQHPYN+IMF+YLD+KLGGSS LPQVIGLTASVGVGDAKN
Sbjct 358 IPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKN 417
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
EA +YICKLCASLD SVIATV+ NLEELE+VVYKPQKFFRKVE R +D+FK II+QLM
Sbjct 418 KAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQKFFRKVELRTTDRFKCIISQLM 477
Query 480 RDTESLAKRICKDLENLS-----QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ ESLAK I ++L ++ QIQN FGTQKYEQWIV VQK C VFQMPDKD+ESRI
Sbjct 478 MEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIVKVQKECAVFQMPDKDKESRI 537
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
CKALF Y SHLR YNDALII+EHARMKDALDYLKDFF N+RAAGFDEIEQDLTQRFEEKL
Sbjct 538 CKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQDLTQRFEEKL 597
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
QELES+S DPSNENPKL DLCFILQEEYHLNPET TILFVKTRALVDALK WI+ NPKLS
Sbjct 598 QELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDALKKWIKENPKLS 657
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
FLKP ILTGRGKTNQN GMTLPAQKC+LD F+ D+ ILI TSVADEGIDIAQCNLVIL
Sbjct 658 FLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVIL 717
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
YEYVGNVIKMIQTRGRGRARGSKCFLLT+NA +I+KE++NMYKE+MMN +IL LQTWDEA
Sbjct 718 YEYVGNVIKMIQTRGRGRARGSKCFLLTANADLIDKEKMNMYKEEMMNGAILILQTWDEA 777
Query 775 VFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVL 834
VF+EKI IQ EK IRD+Q KP+PVPDK+ KKLLC+KCKA ACYTAD+R++E+CH+TV+
Sbjct 778 VFKEKIHQIQIREKIIRDNQGKPEPVPDKKTKKLLCKKCKAFACYTADIRMVEKCHFTVV 837
Query 835 GDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVV 894
GDAF+E FVS+ HPKPK F + EKRAKI+CAR +CSHDWGI+V+YK FE+P IKIESFVV
Sbjct 838 GDAFRERFVSKLHPKPKSFGNIEKRAKIYCARPDCSHDWGIYVRYKAFEMPFIKIESFVV 897
Query 895 EDIATGVQTLYSKWKDFHFEKIPFDPAEMS 924
EDIATGVQT+++KWKDF+FEK+ FD AEM+
Sbjct 898 EDIATGVQTVHAKWKDFNFEKLSFDAAEMA 927
>sp|Q8R5F7|IFIH1_MOUSE Interferon-induced helicase C domain-containing
protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Length=1025
Score = 806 bits (2081), Expect = 0.0, Method: Composition-based stats.
Identities = 299/1007 (30%), Positives = 465/1007 (46%), Gaps = 142/1007 (14%)
Query 32 WFREEEVQYIQAEKNNKGPMEAATLFLKFLLELQ-EEGWFRGFLDALDHAG--YSGLYEA 88
+ E + I + N G AA L L L + Q GW + F++AL+H+G + Y
Sbjct 37 FLSAETKEQILKKINTCGNTSAAELLLSTLEQGQWPLGWTQMFVEALEHSGNPLAARYVK 96
Query 89 IESWDFKKIEK---LEEYRLLLKRLQPEFKTRIIPTDIISDLSE-CLINQECEEILQICS 144
D +E LL LQP +++ D++ E L+ E +
Sbjct 97 PTLTDLPSPSSETAHDECLHLLTLLQPTLVDKLLINDVLDTCFEKGLLTVEDRNRISAAG 156
Query 145 TKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNK--FSEL----------------- 185
G +G +L+ +++ KENW T L + N F EL
Sbjct 157 NSGNESGVRELLRRIVQ--KENWFSTFLDVLRQTGNDALFQELTGGGCPEDNTDLANSSH 214
Query 186 -----------------------WIVEKGIKDVETEDLEDKMETS------DIQIFYQED 216
W V+ + + D E+ + F +
Sbjct 215 RDGPAANECLLPAVDESSLETEAWNVDDILPEASCTDSSVTTESDTSLAEGSVSCFDESL 274
Query 217 PECQNLSENSCPPSEVSDTNLY--------SPFKPRNYQLELALPAMKGKNTIICAPTGC 268
N+ +S SD ++ + R YQ+E+A PA+ GKN IIC PTG
Sbjct 275 GHNSNMGRDSGTMGSDSDESVIQTKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTGS 334
Query 269 GKTFVSLLICEHHLKKFPQ-GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
GKT V++ I + HL K Q + GKV+ N++ + EQ + + YR+ G+SG
Sbjct 335 GKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFRKEFNPYLKKWYRIIGLSGD 394
Query 328 TAENVPVEQIVENNDIIILTPQILVN---NLKKGTIP--SLSIFTLMIFDECHNTSKQHP 382
T + ++V++ D+II T QIL N NL+ G LS F+L+I DECH+T+K+
Sbjct 395 TQLKISFPEVVKSYDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAV 454
Query 383 YNMIMFNYLDQKL--------GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
YN IM YL QKL + PLPQ++GLTAS GVG AK EA +I +CA+L
Sbjct 455 YNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASPGVGAAKKQSEAEKHILNICANL 514
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE 494
DA I TVK NL +L+ + +P K F + + FK + ++M ++ ++
Sbjct 515 DAFTIKTVKENLGQLKHQIKEPCKKFVIADDTRENPFKEKLLEIMASIQTYCQKSP---- 570
Query 495 NLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALII 554
+FGTQ YEQW + ++K D + + R+C HLRKYN+AL I
Sbjct 571 ------MSDFGTQHYEQWAIQMEKKAA----KDGNRKDRVC------AEHLRKYNEALQI 614
Query 555 SEHARMKDALDYLKDFFSNVRAAGF------------------------------DEIEQ 584
++ RM DA +L+ F+++ + F DE ++
Sbjct 615 NDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDDEASSCNDQLKGDVKKSLKLDETDE 674
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-ITILFVKTRALVDAL 643
L F + + L+ ++ +P EN KL L + E++ + E+ I+F KTR AL
Sbjct 675 FLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYAL 734
Query 644 KNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
WI N K + +K L G G +++ MT QK ++ F+ +G+ N+LIAT+VA+
Sbjct 735 SQWIMENAKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKFR-TGEINLLIATTVAE 793
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNA-GVIEKEQINMYKEKM 760
EG+DI +CN+VI Y V N I M+Q RGR RA S L+TS+ GV E+E +N ++EKM
Sbjct 794 EGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGSGVTEREIVNDFREKM 853
Query 761 MNDSILRLQTWDEAVFREKILHIQTH---EKFIRDSQEKPKPVPDKENK-KLLCRKCKAL 816
M +I R+Q + KIL +Q EK ++ + K D + LLC+ C L
Sbjct 854 MYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIAKQYNDNPSLITLLCKNCSML 913
Query 817 ACYTADVRVIEECHYTVLGDAFKECFVSRPHPK-PKQFSSFEKRAKIFCARQNCSHDWGI 875
C ++ VIE+ H+ + FK ++ R + K+F+ ++ +I C C WG
Sbjct 914 VCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQKKFADYQTNGEIIC---KCGQAWGT 970
Query 876 HVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAE 922
+ +K ++P +KI +FVV + Y KW + D +E
Sbjct 971 MMVHKGLDLPCLKIRNFVVNFKNNSPKKQYKKWVELPIRFPDLDYSE 1017
>sp|Q9BYX4|IFIH1_HUMAN Interferon-induced helicase C domain-containing
protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Length=1025
Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats.
Identities = 301/1033 (29%), Positives = 465/1033 (45%), Gaps = 143/1033 (14%)
Query 6 RRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQYIQAEKNNKGPMEAATLFLKFLLEL- 64
R + F+ ++ + +L Y+ + E + IQ G M+A L L L +
Sbjct 12 RYLISCFRARVKMYIQVEPVLDYLT-FLPAEVKEQIQRTVATSGNMQAVELLLSTLEKGV 70
Query 65 QEEGWFRGFLDALDHAG--YSGLYEAIESWDFKKIE---KLEEYRLLLKRLQPEFKTRII 119
GW R F++AL G + Y E D +EY LL LQP +++
Sbjct 71 WHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNLLQPTLVDKLL 130
Query 120 PTDIISDLSEC-LINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
D++ E L+ E + G +G +L++ +++ KENW L +
Sbjct 131 VRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQ--KENWFSAFLNVLRQT 188
Query 179 RNKF------------------------------------------SELWIVEKGIKDVE 196
N E+W +E +
Sbjct 189 GNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESS 248
Query 197 TEDLEDKMETS------DIQIFYQEDPECQNLSENSCPPSEVSDTNLY-------SPFKP 243
D E+ + + N+ +S SD +
Sbjct 249 FADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARASPEPELQL 308
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKGKVVFFANQIPV 302
R YQ+E+A PA++GKN IIC PTG GKT V++ I + HL K + + GKV+ N++ +
Sbjct 309 RPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 368
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN---NLKKGT 359
EQ + F + YRV G+SG T + ++V++ DIII T QIL N NL+ G
Sbjct 369 VEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 428
Query 360 IP--SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG--------PLPQVIGLT 409
LS F+L+I DECH+T+K+ YN IM +YL QKL + PLPQ++GLT
Sbjct 429 DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLT 488
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
AS GVG A +A ++I KLCA+LDA I TVK NL++L+ + +P K F ++ D
Sbjct 489 ASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATRED 548
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
FK + ++M ++ + +FGTQ YEQW + ++K + +
Sbjct 549 PFKEKLLEIMTRIQTYCQMSP----------MSDFGTQPYEQWAIQMEKKAA----KEGN 594
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF---------- 579
+ R+C HLRKYN+AL I++ RM DA +L+ F++ + F
Sbjct 595 RKERVC------AEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDSDEG 648
Query 580 ---------------------DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
DE ++ L F E + L+ ++ +P EN KL L +
Sbjct 649 GDDEYCDGDEDEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTI 708
Query 619 QEEYHLNPET-ITILFVKTRALVDALKNWIEGNPKLS--FLKPGILTGRGKTNQNTGMTL 675
E+Y E+ I+F KTR AL WI N K + +K L G G +++ MT
Sbjct 709 MEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQ 768
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
QK ++ F+ +G N+LIAT+VA+EG+DI +CN+VI Y V N I M+Q RGR RA
Sbjct 769 NEQKEVISKFR-TGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 827
Query 736 SKCFLLTSNA-GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
S L+ + GVIE E +N ++EKMM +I +Q + KIL +Q + +
Sbjct 828 STYVLVAHSGSGVIEHETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMK 887
Query 795 EKPKPVPDKENK----KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPK- 849
K +N LC+ C LAC D+ VIE+ H+ + FKE ++ R +
Sbjct 888 TKRNIAKHYKNNPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKAL 947
Query 850 PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWK 909
K+ + ++ +I C C WG + +K ++P +KI +FVV + Y KW
Sbjct 948 QKKCADYQINGEIIC---KCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNNSTKKQYKKWV 1004
Query 910 DFHFEKIPFDPAE 922
+ D +E
Sbjct 1005 ELPITFPNLDYSE 1017
>sp|Q99J87|DHX58_MOUSE ATP-dependent RNA helicase DHX58 OS=Mus
musculus OX=10090 GN=Dhx58 PE=1 SV=2
Length=678
Score = 624 bits (1610), Expect = 0.0, Method: Composition-based stats.
Identities = 228/692 (33%), Positives = 345/692 (50%), Gaps = 44/692 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+ R YQ E+ LPA++GKN II PTG GKT + + + HL+ +GKVV N++
Sbjct 2 ELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETV---DRGKVVVLVNRVH 58
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-- 359
+ Q F + ++H + VT +SG + ++D++I T ++L L
Sbjct 59 LVSQHAEEFRRMLDKH-WTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEED 117
Query 360 -IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
L F+L++ DECH+T K YN I+ YL+QKL + PLPQV+GLTAS G G A
Sbjct 118 EHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKK-AEPLPQVLGLTASPGTGGAT 176
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
A+D+I +LCA+LD I + K+ +L KP K + + R D F +I +L
Sbjct 177 KLQGAIDHILQLCANLDTCHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPFGDLIKKL 236
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
M +I + LE Q +FGTQ YEQ +V + K +
Sbjct 237 M-------NQIHQQLEMPDLKQ--QFGTQMYEQQVVQLCKDAAEAGLQ----------EQ 277
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD--EIEQDLTQRFEEKLQE 596
+Y HLR+YNDAL I + R +DALD L+DF+ R E L + F++
Sbjct 278 RVYALHLRRYNDALFIHDTVRARDALDMLQDFYDRERTTKTQMVRAESWLLKLFDDHKNV 337
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF- 655
L ++ ENPKLE L IL +++ T I+F +TR +L W+ P L
Sbjct 338 LGQLAAR-GPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQPCLQTV 396
Query 656 -LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
+KP +L G G T+Q+T MT Q+ ++ F+ G ++L+ATSVA+EG+DIAQCN+V+
Sbjct 397 GIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFR-DGILSLLVATSVAEEGLDIAQCNVVVR 455
Query 715 YEYVGNVIKMIQTRGRGRARGSKC-FLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
Y + N I M+Q RGR RA S FL T + +++E N E +M ++ +Q D
Sbjct 456 YGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKRELTNEALEVLMEKAVAAVQKMDP 515
Query 774 AVFREKILHIQTHEKFIRDSQEKPKPVPDK----ENKKLLCRKCKALACYTADVRVIEEC 829
F+ KI +Q R ++ + + E+ +LLC C Y +D+R +E
Sbjct 516 DEFKAKIRDLQQASLVKRAARAAHREIQQGQFLPEHVQLLCINCMVAVGYGSDLRKVEGT 575
Query 830 HYTVLGDAFKECFVSRPHPK--PKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVI 887
H+ + F + + +P K F + I C+ NC WG + YK+ +PV+
Sbjct 576 HHVNVNPNFSVYYTTSQNPVVINKVFKDWRPGGTIRCS--NCGEVWGFQMIYKSVTLPVL 633
Query 888 KIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919
KI S ++E +Q KW F FD
Sbjct 634 KIGSILLETPRGKIQA--KKWSRVPFSIPVFD 663
>sp|Q96C10|DHX58_HUMAN ATP-dependent RNA helicase DHX58 OS=Homo
sapiens OX=9606 GN=DHX58 PE=1 SV=1
Length=678
Score = 602 bits (1552), Expect = 0.0, Method: Composition-based stats.
Identities = 214/695 (31%), Positives = 349/695 (50%), Gaps = 50/695 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+ R+YQ E+ +PA++GKN II PTG GKT + + + HL+ KVV N++
Sbjct 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRHLETV---DGAKVVVLVNRVH 58
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK---G 358
+ Q F + + + VT +SG + +D++I T ++L L
Sbjct 59 LVTQHGEEFRRMLDGR-WTVTTLSGDMGPRAGFGHLARCHDLLICTAELLQMALTSPEEE 117
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
L++F+L++ DECH+T K YN+IM YL+ KL + PLPQV+GLTAS G G A
Sbjct 118 EHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQR-AQPLPQVLGLTASPGTGGAS 176
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
D A++++ +LCA+LD I + ++ +L++ +P K + R D F ++ +L
Sbjct 177 KLDGAINHVLQLCANLDTWCIMSPQNCCPQLQEHSQQPCKQYNLCHRRSQDPFGDLLKKL 236
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
M +I LE +R+FGTQ YEQ +V + +A + +
Sbjct 237 MD-------QIHDHLEM--PELSRKFGTQMYEQQVVKLSEAAALAGLQ----------EQ 277
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD--EIEQDLTQRFEEKLQE 596
+Y HLR+YNDAL+I + R DAL L+DF+ E+ L F+++ E
Sbjct 278 RVYALHLRRYNDALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNE 337
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF- 655
L ++ ENPKLE L ILQ ++ + I+F +TR +L W++ L
Sbjct 338 LAHLATH-GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTV 396
Query 656 -LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
++ +L G G ++Q+T MT Q+ ++ F+ G N+L+ATSVA+EG+DI CN+V+
Sbjct 397 DIRAQLLIGAGNSSQSTHMTQRDQQEVIQKFQ-DGTLNLLVATSVAEEGLDIPHCNVVVR 455
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG-VIEKEQINMYKEKMMNDSILRLQTWDE 773
Y + N I M+Q RGR RA S + + +++E IN E +M ++ +Q D+
Sbjct 456 YGLLTNEISMVQARGRARADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKMDQ 515
Query 774 AVFREKILHIQT-------HEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVI 826
A ++ KI +Q + R++Q + PV E+ +LLC C + +D+R +
Sbjct 516 AEYQAKIRDLQQAALTKRAAQAAQRENQRQQFPV---EHVQLLCINCMVAVGHGSDLRKV 572
Query 827 EECHYTVLGDAFKECFVSR--PHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEI 884
E H+ + F + P K F ++ I C +NC WG+ + YK+ ++
Sbjct 573 EGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISC--RNCGEVWGLQMIYKSVKL 630
Query 885 PVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFD 919
PV+K+ S ++E +Q KW F FD
Sbjct 631 PVLKVRSMLLETPQGRIQA--KKWSRVPFSVPDFD 663
>sp|Q2URJ5|MPH1_ASPOR ATP-dependent DNA helicase mph1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mph1
PE=3 SV=2
Length=1129
Score = 467 bits (1202), Expect = 5e-147, Method: Composition-based stats.
Identities = 128/650 (20%), Positives = 246/650 (38%), Gaps = 73/650 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ D+ + +T I Q ++P Q+ ++ + V TNL K
Sbjct 268 GVRQTSLFDMTSRNQTDQPPIGEQVWSPPQKDEPPTQHKLDHDALSTWVYPTNLG---KT 324
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ +A + N ++ PTG GKTF++ I L F + +++F A P+
Sbjct 325 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIM---LNWFRWTESAQIIFVAPTKPLV 380
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + T ++G A + E+ +N + +TPQ L+N+LK G I
Sbjct 381 AQQISACFGIAGIPRSQTTMLTGEAAPGIRAEE-WQNKRVFFMTPQTLINDLKSG-IADP 438
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 439 KRIVLLVVDEAHRATGGYAYVEVV------KFLRRYNQSFRVLALTATPG--------ST 484
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + LD + + ++ + V+ + ++ D + L
Sbjct 485 VESVQAVIDGLDIARVEIRTEQSLDIREYVHSRNTEVQTFKNSEEMVLCMDLLSKTLQPL 544
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +L +D L+ T+ +QW+ + F + K A
Sbjct 545 VDQLRTLNAYWGRDPMMLTAFGL----TKSRQQWMASDAGRNAHFGLKGKVNAIFTVLAS 600
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q F++ +
Sbjct 601 LAHAIDLLKYHGITPFYRH---------LLHFQSNTEGQKGGKYQRQVVQDESFKKLINH 651
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + E T ++FV R + +
Sbjct 652 LQPWTKNPEFIGHPKLEYLKSVVLNHFMDAGEGSNGEASDSQSSTRIMIFVHFRDSAEEV 711
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ ++P + G+ + GM Q I+ FK G +N ++ATS+ +EG
Sbjct 712 TRVLKRYE--PMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK-KGTYNTIVATSIGEEG 768
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL E + M
Sbjct 769 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQ 828
Query 763 DSILRLQTW------DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
I + + I + + + +P+ + +
Sbjct 829 QMIASGSRFTFHDDISPRILPAGIRPVADKRHIDIPDENAEQSLPEPKRR 878
>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl1 PE=3 SV=1
Length=1538
Score = 466 bits (1199), Expect = 3e-143, Method: Composition-based stats.
Identities = 139/626 (22%), Positives = 254/626 (41%), Gaps = 71/626 (11%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKV-VF 295
PR YQ+EL A K +NTI TG GKT +++L+ H L G+ +V F
Sbjct 125 LDPREYQIELFERA-KTQNTIAVLDTGSGKTLIAVLLLRHTILNELDNRANGKPHRVSFF 183
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGAT-AENVPVEQIVENNDIIILTPQILVNN 354
+ + + QQ +V +++ G G + ++ ++ N +I+ T +IL
Sbjct 184 LVDSVTLAYQQAAVLRNNIDQNVAHFFGAMGTDLWDKRTWDEHLQRNMVIVCTAEILNQC 243
Query 355 LKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
L + + L+IFDE H+ K HPY I+ + P+V G+TAS
Sbjct 244 LLNSYV-KMDQINLLIFDEAHHAKKDHPYARIIRDSY---FKAQPSQRPRVFGMTASPID 299
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
T+ +L LD+ + T K L L +VV +P + +R+ F
Sbjct 300 TKGDITE----AATRLETLLDSRIATTSKITL--LREVVSRPIEKVWAY-NRLESPFATE 352
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ +LM DT ++ + + + + E G ++ ++ ++ S++
Sbjct 353 LYKLM-DTRYGNIKVLEGVYRFAWHASSELGKWCSDRAWWHALADDVLPKLEG--NISKL 409
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
++ L H + + R+++A + +K++ F + E
Sbjct 410 VESNTLNAEH------GAVFKDIIRIREASETVKNY-------SFADPEL---------- 446
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
P +PK++ L L + + T I+F + R L +
Sbjct 447 ---------PGELSPKVQLLRMELSKHFSDTTGTKCIVFTQKRYTAKILNELFTV-LNIP 496
Query 655 FLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
L+PG+L G R +T Q L F+ +G+ N L ATSVA+EG+DI CNLV+
Sbjct 497 HLRPGVLIGVRPGDIGGMNVTFRQQFLALVKFR-TGEINCLFATSVAEEGLDIPDCNLVV 555
Query 714 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
++ +I+ +Q+RGR R S ++ + ++ K + ++ +Q + E
Sbjct 556 RFDLYRTLIQYVQSRGRARHCTSTYAIMVEKDNAEHEGRL-----KEIREAEKIMQRFCE 610
Query 774 AVFREKILHIQTHE---KFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR----VI 826
+ ++ILH H+ + + V K LA Y + ++ +
Sbjct 611 TLPEDRILHGNDHDLDSLLQEEEGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETV 670
Query 827 EECHYTV--LGDAFKECFVSRPHPKP 850
+ Y V + +A+ C V P P
Sbjct 671 PQVTYVVGHVSNAYV-CEVILPEKSP 695
>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl1 PE=3 SV=2
Length=1519
Score = 464 bits (1193), Expect = 2e-142, Method: Composition-based stats.
Identities = 144/649 (22%), Positives = 254/649 (39%), Gaps = 71/649 (11%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
Q SE S + + PR YQ+EL A K +NTI TG GKT +++L+
Sbjct 84 PNQAQSELSISSLIGRNASGTGILNPREYQIELFERA-KVQNTIAVLDTGSGKTLIAVLL 142
Query 278 CEH----HLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+H L G ++ F + + + QQ SV +++ G G N
Sbjct 143 LKHVIQTELIDRANGNPPRISFFLVDSVTLVYQQASVLRNNLDQNVAHFFGAMGVDLWNK 202
Query 333 P-VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 391
+ E N +I+ T +IL L I + L++FDE H+T K HPY I+ +
Sbjct 203 QTWAEHFEKNMVIVCTAEILNQCLLNAYIT-MQQINLLVFDEAHHTKKDHPYARIIRDSY 261
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
L P++ G+TAS L+ L A LD+ + T K + L Q
Sbjct 262 ---LRVPPSSRPRIFGMTASPVDTKGD----VLEAARNLEALLDSKIATTSKLTI--LRQ 312
Query 452 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ 511
VV +P + + ++ F + +LM ++ + + ++ E GT ++
Sbjct 313 VVNRPNEEVWIYD-KLQPTFTSDLYKLM-ESRFGDISHLEPMFRFARHATSELGTWCADR 370
Query 512 WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFF 571
V+ ++ ++ R L + + + R+K+A + ++
Sbjct 371 VWVSALADDVLPKVEGSIGGKRQSTGLGQLPKDVHR--------DITRIKEASELVESHP 422
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 631
N A P + K+ L + + + T I
Sbjct 423 PNDPGA--------------------------PEALSSKVRVLWKEISQCFGQETNTKCI 456
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGD 690
+F + R L + + L+PG+L G R +T Q + F+ +G+
Sbjct 457 VFTEKRYTAKVLFDLFTV-LNVPGLRPGVLIGVRSSDRIGMNVTFRQQILTMVRFR-TGE 514
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
N L AT+VA+EG+DI CNLV+ ++ +I+ +Q+RGR R S + +
Sbjct 515 INCLFATAVAEEGLDIPDCNLVVRFDLYKTLIQYVQSRGRARHADSTYASMIEKDNADHE 574
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE---KFIRDSQEKPKPVPDKENKK 807
+ +ND+ +Q++ + + ++ILH + R+ E+P +P +
Sbjct 575 SIL-----VQVNDAEKIMQSFCQLLPEDRILHGNDDDTDAVLDREEWEEPYTLPSTAARL 629
Query 808 LLCRKCKALACYTADVR----VIEECHYTVL--GDAFKECFVSRPHPKP 850
LA Y + ++ + Y VL DA+ C V P P
Sbjct 630 THHSAITVLARYASSLQYENDTSAQVTYVVLPVNDAYV-CEVILPEKSP 677
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Aspergillus fumigatus
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
OX=330879 GN=dcl1 PE=3 SV=3
Length=1537
Score = 463 bits (1192), Expect = 3e-142, Method: Composition-based stats.
Identities = 143/663 (22%), Positives = 262/663 (40%), Gaps = 76/663 (11%)
Query 210 QIFYQEDPECQNLSENSCPPSEVSDTNLYSP-------FKPRNYQLELALPAMKGKNTII 262
+ + E + + + E+S +L PR YQ+EL A K +NTI
Sbjct 86 KCTDADSNEAFDRAPIALSDGELSIAHLVKKQDLGNGMLDPREYQIELFERA-KTQNTIA 144
Query 263 CAPTGCGKTFVSLLICEH----HLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERH 317
TG GKT +++L+ H L G+ +V F + + + QQ +V +++
Sbjct 145 VLDTGSGKTLIAVLLLRHTILNELDDRANGKTHRVSFFLVDSVTLAYQQAAVLRNNIDQN 204
Query 318 GYRVTGISGAT-AENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
G G + ++ ++ N +I+ T +IL L + + L+IFDE H+
Sbjct 205 VAHFFGAMGTDLWDKRTWDKHLQRNMVIVCTAEILNQCLLNSYV-RMDQINLLIFDEAHH 263
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
K HPY I+ + P+V G+TAS T+ +L LD+
Sbjct 264 AKKDHPYARIIRDSY---FKAQPSQRPRVFGMTASPIDTKGDITE----AATRLETFLDS 316
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
+ T K L L +VV +P + +R+ F + +LM DT ++ + +
Sbjct 317 RIATTSKITL--LREVVSRPIEKVWAY-NRLEPPFATELYKLM-DTRYGNIKVLEGVYRF 372
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
+ + E G ++ ++ ++ + L S+ K + +
Sbjct 373 AWNASSELGKWCSDRAWWHALADDVLPKLEGNINK--------LIESNTMKAEHGAVFKD 424
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
R+++A + +K++F F + E P +PK++ L
Sbjct 425 IIRIREASETVKNYF-------FTDPEL-------------------PGELSPKVQRLRM 458
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG-RGKTNQNTGMTL 675
L + ++ T I+F + R L + L+PG+L G R +T
Sbjct 459 ELSKHFNDTTGTKCIVFTQKRYTAKILNELFTV-LNIPNLRPGVLIGVRPGDIGGMNITF 517
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
Q L F+ +G+ N L ATSVA+EG+DI CNLVI ++ +I+ +Q+RGR R
Sbjct 518 RQQFLALVKFR-TGEINCLFATSVAEEGLDIPDCNLVIRFDLYRTLIQYVQSRGRARHCT 576
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK---FIRD 792
S ++ + ++ K + ++ ++ + E + ++ILH H+ +
Sbjct 577 STYAIMVEKDNAEHEGRL-----KEIREAENIMRRFCEILPEDRILHGNDHDLDSFLQEE 631
Query 793 SQEKPKPVPDKENKKLLCRKCKALACYTADVR----VIEECHYTV-LGDAFKECFVSRPH 847
+ V K LA Y + ++ + + Y V + C V P
Sbjct 632 EGRRTFTVKSTGAKLTYHSAIAILARYASSLQYEKETVPQVTYVVTIASNAYVCEVILPE 691
Query 848 PKP 850
P
Sbjct 692 KSP 694
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl1 PE=3 SV=2
Length=1534
Score = 461 bits (1187), Expect = 2e-141, Method: Composition-based stats.
Identities = 151/669 (23%), Positives = 259/669 (39%), Gaps = 96/669 (14%)
Query 215 EDPECQNLSENSC--PPSEVSDTNLYSP-------FKPRNYQLELALPAMKGKNTIICAP 265
ED +N+ +E+S +L + PR YQ+EL A K +NTI
Sbjct 86 EDTSNENIDRVPLNLSDNELSIAHLVAKQDVGGGLLDPREYQIELFERA-KAQNTIAVLD 144
Query 266 TGCGKTFVSLLICEH----HLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT +++L+ H L G+ +V F + + + QQ +V +++
Sbjct 145 TGSGKTLIAVLLLRHVLQNELNDRANGKPHRVSFFLVDSVTLAYQQAAVLRNNIDQNVAH 204
Query 321 VTGISGAT-AENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 379
G G + E+ ++ N +I+ T +IL L + ++ L+IFDE H+T K
Sbjct 205 FFGAMGTDLWDRQVWEEHLQQNMVIVCTAEILNQCLLNSHV-RMNQINLLIFDEAHHTKK 263
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
HPY I+ + S P++ G+TAS + +L LD+ +
Sbjct 264 DHPYARIIRDSY---FKASPPQRPRIFGMTASPIDTKGD----IIAAATRLETLLDSRIA 316
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
T K L L QVV +P + + R+ FK + +LM +
Sbjct 317 TTSKITL--LRQVVSRPIEKVWAYD-RLESPFKTNLHKLMEN------------------ 355
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
FG V + F E R C + L D
Sbjct 356 ---RFGN-------VKALEGVFRFAWYASSELGRWCSD----RAWLYALAD--------- 392
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD--------PSNENPKL 611
D L L+ + + + E+D+ + ++E ++ + P +PK+
Sbjct 393 --DVLPKLEGHVNKLAESTAAATERDMAFKEITLIKEASNIVKAHTFNDPEFPGELSPKV 450
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG-RGKTNQN 670
L L + + PET I+F + R L + L+PG+L G R
Sbjct 451 RLLQTELSKHFSHAPETKCIIFTQKRYTAKTLHELF-TILSIPHLRPGVLIGVRSGDIGG 509
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+T Q L F+ G+ N L ATSVA+EG+DI CNLV+ ++ +I+ +Q+RGR
Sbjct 510 MNITFRQQFLALVKFR-KGEINCLFATSVAEEGLDIPDCNLVVRFDLYHTLIQYVQSRGR 568
Query 731 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE--- 787
R S + + ++ + + ++ +Q + E + ++ILH H+
Sbjct 569 ARHYHSTYASMVEKDNSDHEARL-----REVREAEKTMQNFCETLPEDRILHGNDHDLDS 623
Query 788 KFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR----VIEECHYTV--LGDAFKEC 841
+ + V + LA Y + ++ + Y V +G+ + C
Sbjct 624 LLQHEEGRRTFTVKSTGARLTYHSAIAILARYASSLQYEKETTPQATYVVQSVGNTYV-C 682
Query 842 FVSRPHPKP 850
V P P
Sbjct 683 EVILPEKSP 691
>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=mph1 PE=3 SV=2
Length=1124
Score = 448 bits (1151), Expect = 1e-139, Method: Composition-based stats.
Identities = 127/638 (20%), Positives = 239/638 (37%), Gaps = 68/638 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ + + + Q +P Q+ + V TNL K
Sbjct 265 GVRQTTLFGMVARNPENQPPRGEQVYSPPEKSEPPTQHKLNQEALGTWVYPTNLG---KT 321
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ +A + N ++ PTG GKTF++ I L F + ++VF A P+
Sbjct 322 RDYQFNIAQKGL-FHNLLVALPTGLGKTFIAATIM---LNWFRWTKDAQIVFVAPTKPLV 377
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + + T ++G A + E+ + + +TPQ L+N+LK G I
Sbjct 378 AQQISACFEVAGIPRSQTTMLTGEAAPGIRAEE-WKAKRVFFMTPQTLINDLKTG-IADP 435
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 436 KRIVLVVVDEAHRATGGYAYVEVV------KFLRRYNQSFRVLALTATPG--------ST 481
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + LD S + ++ + V+ + ++ D + L
Sbjct 482 VESVQAVIDGLDISRVEIRTEQSLDIREYVHSKDTDVQTFQNSEEMVLCMDLMSKALQPL 541
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ S +D L+ T+ +QW+++ F + K A
Sbjct 542 LDQLRSTNAYWGRDPMGLTAYGL----TKARQQWMLSDSGRNAHFGVKAKMNAIFTVLAS 597
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q +++ +
Sbjct 598 LAHGIDLLKYHGITPFYRH---------LLHFQSNTEGQKGGKYQRQVVQDESYKKLMNH 648
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHL------------NPETITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + P T ++FV R + +
Sbjct 649 LQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADENKDQPATRVMIFVHFRDSAEEV 708
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ ++P + G+ + GM Q I+ FK G +N ++ATS+ +EG
Sbjct 709 TRVLKRYE--PMIRPHVFVGQSSAKGSEGMGQKTQLDIVQKFK-KGTYNTIVATSIGEEG 765
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R K LL E + M
Sbjct 766 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRSGKITLLLMQGKEEESYIKAKDNYEKMQ 825
Query 763 DSILRLQTWD-EAVFREKILHIQTHEKFIRDSQEKPKP 799
I + +IL + + + P+
Sbjct 826 QMIASGTRFTFHDDMSPRILPPGVRPVADKRAIDIPEE 863
>sp|A1CS00|MPH1_ASPCL ATP-dependent DNA helicase mph1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mph1 PE=3 SV=1
Length=1119
Score = 445 bits (1144), Expect = 1e-138, Method: Composition-based stats.
Identities = 123/658 (19%), Positives = 240/658 (36%), Gaps = 85/658 (13%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ + + + I Q + + + + + TNL K
Sbjct 250 GLRQSTLFGMTARASEASIPRGEQVFSPPDKNEAPTHHKLDEEALNTWIYPTNLG---KT 306
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + + N ++ PTG GKTF++ I L + + +++F A P+
Sbjct 307 RDYQFNITQRGL-FHNLLVALPTGLGKTFIAATIM---LNWYRWTKSSQIIFVAPTKPLV 362
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + T ++G A + E+ + + +TPQ L+N+LK G I
Sbjct 363 SQQISACFGIAGIPRSQTTMLTGEAAPGIRAEE-WKAKRVFFMTPQTLINDLKSG-IADP 420
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 421 KRIVLLVVDEAHRATGGYAYVEVV------KFIKRYNKSFRVLALTATPG--------ST 466
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + LD + + ++ + V+ + ++ D F + L
Sbjct 467 VESVQAVIDGLDIAKVEIRTEQSLDIREYVHARNTDVQTFQNSDEMVLCMDLFSRTLQPL 526
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ SL KD L+ T+ +QW+++ + + K A
Sbjct 527 VDQLCSLNAYWGKDPMALTPFGL----TKARQQWMLSDAGRNANYGLKGKVNAIFTVLAS 582
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q F++ +
Sbjct 583 LAHAIDLLKYHGITPFYRH---------LVHFRSNTDGQKGGKYQRQIVQDESFKKLMNH 633
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + E T ++F R + +
Sbjct 634 LQPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSGADGNHTRSATRIMVFAHFRDSAEEI 693
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ L ++P + G+ + GM Q I+ FK GD+N ++ATS+ +EG
Sbjct 694 VRVLKRYEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGDYNTIVATSIGEEG 750
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL +E+
Sbjct 751 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGK----------EEESYI 800
Query 763 DSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYT 820
+ + E + P+ +P ++ T
Sbjct 801 RAKDNYEKMQEMIASGTRFAFHDD--------TSPRILPPGIRPTADKKQIDIPVENT 850
>sp|Q4WKB5|MPH1_ASPFU ATP-dependent DNA helicase mph1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=mph1 PE=3 SV=1
Length=1101
Score = 443 bits (1139), Expect = 4e-138, Method: Composition-based stats.
Identities = 122/609 (20%), Positives = 231/609 (38%), Gaps = 67/609 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ D+ + Q Q +P + + V TNL K
Sbjct 233 GLRQSTLFDMAARNPDISSQRGEQIFSPPEKSEPPTHHKLNEEALNTWVYPTNLG---KT 289
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ +A + N ++ PTG GKTF++ I L + + +++F A P+
Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPTKPLV 345
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + T ++G A + E+ ++ + +TPQ LVN+LK G I
Sbjct 346 AQQISACFQVAGIPRSETTMLTGEAAPGIRAEE-WKSKRVFFMTPQTLVNDLKSG-IADP 403
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 404 KRIVLLVVDEAHRATGGYAYVEVV------KFLKRYNKSFRVLALTATPG--------ST 449
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + L + + ++ + V+ + ++ + F + L
Sbjct 450 VESVQAIIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMVLCMELFTRTLQPL 509
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +L +D L+ T+ +QW+ + + K A
Sbjct 510 VDQLRNLNAYWGRDPMALTAFGL----TKARQQWMGSDAGRNANLALKGKVNAIFTVLAS 565
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q F++ +
Sbjct 566 LAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQDESFKKLMNH 616
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + E T ++FV R + +
Sbjct 617 LQPWTKNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEV 676
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ + L ++P + G+ + GM Q I+ FK G +N ++ATS+ +EG
Sbjct 677 VRVLKRHEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGTYNTIVATSIGEEG 733
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL E + M
Sbjct 734 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKMQ 793
Query 763 DSILRLQTW 771
I +
Sbjct 794 QMIASGTRF 802
>sp|B0XMV6|MPH1_ASPFC ATP-dependent DNA helicase mph1 OS=Aspergillus
fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804
GN=mph1 PE=3 SV=1
Length=1101
Score = 443 bits (1139), Expect = 4e-138, Method: Composition-based stats.
Identities = 122/609 (20%), Positives = 231/609 (38%), Gaps = 67/609 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ D+ + Q Q +P + + V TNL K
Sbjct 233 GLRQSTLFDMAARNPDISSQRGEQIFSPPEKSEPPTHHKLNEEALNTWVYPTNLG---KT 289
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ +A + N ++ PTG GKTF++ I L + + +++F A P+
Sbjct 290 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPTKPLV 345
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + T ++G A + E+ ++ + +TPQ LVN+LK G I
Sbjct 346 AQQISACFQVAGIPRSETTMLTGEAAPGIRAEE-WKSKRVFFMTPQTLVNDLKSG-IADP 403
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 404 KRIVLLVVDEAHRATGGYAYVEVV------KFLKRYNKSFRVLALTATPG--------ST 449
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + L + + ++ + V+ + ++ + F + L
Sbjct 450 VESVQAIIDDLGIAKVEIRTEQSLDIREYVHARDTEVQTFQNSDEMVLCMELFTRTLQPL 509
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +L +D L+ T+ +QW+ + + K A
Sbjct 510 VDQLRNLNAYWGRDPMALTAFGL----TKARQQWMGSDAGRNANLALKGKVNAIFTVLAS 565
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q F++ +
Sbjct 566 LAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQDESFKKLMNH 616
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + E T ++FV R + +
Sbjct 617 LQPWTKNPDFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEV 676
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ + L ++P + G+ + GM Q I+ FK G +N ++ATS+ +EG
Sbjct 677 VRVLKRHEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGTYNTIVATSIGEEG 733
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL E + M
Sbjct 734 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKMQ 793
Query 763 DSILRLQTW 771
I +
Sbjct 794 QMIASGTRF 802
>sp|Q0CWI2|MPH1_ASPTN ATP-dependent DNA helicase mph1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mph1
PE=3 SV=2
Length=1100
Score = 440 bits (1132), Expect = 4e-137, Method: Composition-based stats.
Identities = 121/650 (19%), Positives = 238/650 (37%), Gaps = 73/650 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQE-------DPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ ++ + + Q + Q+ + V TNL K
Sbjct 254 GVRQTTLFNMATRNQAPQPPQGEQVFAPPEKVEAPTQHKLNQEAISTWVYPTNLG---KT 310
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ + + N ++ PTG GKTF++ I L F + ++VF A P+
Sbjct 311 RDYQFNITQKGL-FHNLLVALPTGLGKTFIAATIM---LNWFRWTRDAQIVFVAPTKPLV 366
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + T ++G A + Q ++ + +TPQ L+N+LK G I
Sbjct 367 AQQVSACFGVAGIPRSQTTMLTGEAAPGIRA-QEWQDKRVFFMTPQTLINDLKSG-IADP 424
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 425 KRIVLLVVDEAHRATGGYAYVEVV------KFLRRYNQSFRVLALTATPG--------ST 470
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + L+ S + ++ + V+ + ++ D + L
Sbjct 471 VESVQAVIDGLEISKVEIRTEQSLDIREYVHARNTEVQTFKNSEEMVLCMDLLSKTLQPL 530
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +L +D L+ T+ +QW+++ F + K A
Sbjct 531 VDQLRTLNAYWGRDPMALTAYGL----TKSRQQWMLSDAGRNSSFGLKGKVNAIFTVLAS 586
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F N + ++ + Q F++ +
Sbjct 587 LAHGIDLLKYHGITPFYRH---------LLHFQGNTDGQKGGKYQRQIVQDEHFKKLMNH 637
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L +++P +PKLE L ++ + E T ++FV R + +
Sbjct 638 LSPWTKNPEFIGHPKLEYLKQVVLNHFMDAGEGSAGAEGASQSTTRVMIFVHFRDSAEEV 697
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ ++P + G+ + GM Q ++ FK G +N ++ATS+ +EG
Sbjct 698 ARVLKRYE--PMIRPQVFVGQASAKGSDGMNQKTQLGVVQKFK-QGTYNTIVATSIGEEG 754
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL E + M
Sbjct 755 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMEGKEEESYIKAKDNYEKMQ 814
Query 763 DSILRLQTW------DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
I + + + I + + + +P+ + +
Sbjct 815 QMIASGTRFTFHDDKSPRILPPGVKPIVDKRHIDIPEENEEQALPEPKRR 864
>sp|A1D4V5|MPH1_NEOFI ATP-dependent DNA helicase mph1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mph1
PE=3 SV=1
Length=1111
Score = 439 bits (1130), Expect = 1e-136, Method: Composition-based stats.
Identities = 122/609 (20%), Positives = 231/609 (38%), Gaps = 67/609 (11%)
Query 191 GIKDVETEDLEDKMETSDIQIFYQ-------EDPECQNLSENSCPPSEVSDTNLYSPFKP 243
G++ D+ + Q Q +P + + V TNL K
Sbjct 243 GLRQSTLFDMAARNSDIPSQRGEQILSPPEKNEPPTHHKLNEEAINTWVYPTNLG---KT 299
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
R+YQ +A + N ++ PTG GKTF++ I L + + +++F A P+
Sbjct 300 RDYQFNIAQRGL-FHNLLVALPTGLGKTFIAATIM---LNWYRWTKSAQIIFVAPTKPLV 355
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ S + + T ++G A + E+ ++ + +TPQ LVN+LK G I
Sbjct 356 AQQISACFQVAGIPRSQTTMLTGEAAPGIRAEE-WKSKRVFFMTPQTLVNDLKSG-IADP 413
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
L++ DE H + + Y ++ K +V+ LTA+ G
Sbjct 414 KRIVLLVVDEAHRATGGYAYVEVV------KFLKRYNKSFRVLALTATPG--------ST 459
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS-----DKFKYIIAQL 478
++ + + L + + ++ + V+ + ++ + F + L
Sbjct 460 VESVQAVIDGLGIAKVEIRTEQSLDIREYVHARDTEVQTFKNSDEMVLCMELFTRTLQPL 519
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +L +D L+ T+ +QW+ + + K A
Sbjct 520 VDQLRNLNAYWGRDPMALTAFGL----TKARQQWMGSDAGRNANLGLKGKVNAIFTVLAS 575
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ--RFEEKLQE 596
+ L KY+ H L F SN + ++ + Q F++ +
Sbjct 576 LAHAIDLLKYHGITPFYRH---------LLHFQSNTDGQKGGKYQRQIVQDESFKKLMNH 626
Query 597 LESVSRDPSN-ENPKLEDLCFILQEEYHLNPE------------TITILFVKTRALVDAL 643
L+ +++P +PKLE L ++ + E T ++FV R + +
Sbjct 627 LQPWTKNPEFIGHPKLEYLKQVVLNHFMDRGEGTAANGDQSQSATRIMIFVHFRDSAEEV 686
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ L ++P + G+ + GM Q I+ FK G +N ++ATS+ +EG
Sbjct 687 VRVLKRYEPL--IRPHVFVGQSSAKGSEGMDQKTQLSIVQKFK-KGTYNTIVATSIGEEG 743
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +L++ Y+ + I+M+Q GR GR R LL E + M
Sbjct 744 LDIGEVDLIVCYDSSASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEESYIKAKDNYEKMQ 803
Query 763 DSILRLQTW 771
I +
Sbjct 804 QMIASGTRF 812
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl1 PE=3 SV=2
Length=1523
Score = 446 bits (1148), Expect = 5e-136, Method: Composition-based stats.
Identities = 141/646 (22%), Positives = 259/646 (40%), Gaps = 79/646 (12%)
Query 228 PPSEVSDTNLYSP-------FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
P +E+S +L + PR YQ+EL A K +NTI TG GKT +++L+ +H
Sbjct 94 PDAELSTASLVAKQDAGTGMLDPREYQVELFERA-KSQNTIAVLDTGSGKTLIAVLLLKH 152
Query 281 ----HLKKFPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGAT-AENVPV 334
L G+ ++ F + + + QQ +V +++ + G G
Sbjct 153 IIQNELIDRANGKPPRISFFLVDSVTLAFQQAAVLRNNLDQNVAQFFGAMGTDLWSKQTW 212
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 394
+ ENN +I+ T +IL L I + L+IFDE H+T K HPY I+
Sbjct 213 DHQFENNMVIVCTAEILNQCLLNSYI-RMDQINLLIFDEAHHTKKDHPYARIIRESY--- 268
Query 395 LGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 454
L P++ G+TAS + A KL LD+ + T K NL L +VV
Sbjct 269 LKADPTKRPRIFGMTASPIDTKGDIIESA----TKLEVLLDSKIATTSKPNL--LREVVR 322
Query 455 KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV 514
+P + + + ++ F + Q+++ + + + + E G ++
Sbjct 323 RPIEESWEYD-KLDPPFATKLYQILQARFGDISSLQP-VFRFTLQASSELGPCCADRAWA 380
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNV 574
++ ++ + + + L+ E +R+++A D +K+ N
Sbjct 381 YALADDVLPKLEGNVRKLAQSISSPIPQCALK---------EISRIQEASDIVKNHSFNS 431
Query 575 RAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFV 634
P +PK++ L L + + +T I+F
Sbjct 432 PNV--------------------------PGELSPKVQLLRQKLIKYFEHPTKTKCIVFT 465
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
+ R L + ++ +L+PG+L G R ++ Q L F+ SG+ N
Sbjct 466 QKRYTAKMLFDLFST-LEIPYLRPGVLIGVRSGDIVGMNVSFRQQFLALVKFR-SGEINC 523
Query 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI 753
L ATSVA+EG+DI CNLV+ ++ +I+ +Q+RGR R S + ++
Sbjct 524 LFATSVAEEGLDIPDCNLVVRFDLYNTLIQYVQSRGRARHSSSTYASMIERYNADHAARL 583
Query 754 NMYKEKMMNDSILRLQTWDEAVFREKILHI---QTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ ++ +Q++ E + ++ILH + + +++ + K
Sbjct 584 -----VEVREAEKLMQSFCETLPEDRILHGIDSEIDSILQGEEEKRTFIIRATGAKLTYH 638
Query 811 RKCKALACYTADVR----VIEECHYTVL--GDAFKECFVSRPHPKP 850
LA Y + ++ + Y VL ++F C V P P
Sbjct 639 SALAILARYASSLQYEKETSAQATYVVLPQNNSFV-CEVILPEKSP 683
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl1 PE=3 SV=2
Length=1525
Score = 446 bits (1146), Expect = 9e-136, Method: Composition-based stats.
Identities = 151/649 (23%), Positives = 259/649 (40%), Gaps = 79/649 (12%)
Query 225 NSCPPSEVSDTNLYSP-------FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
+ P +++S +L + PR YQLEL A K +NTI TG GKT +++L+
Sbjct 92 HDLPDAQLSTAHLVAKQDLGIGTLDPREYQLELFERA-KVQNTIAVLDTGSGKTLIAVLL 150
Query 278 CEH----HLKKFPQGQKGKVVFF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+H L +G+ ++ FF + + + QQ +V ++ G G +
Sbjct 151 LKHTLEKELNDRMEGKPHRIAFFLVDSVTLAYQQAAVLRNNLDQSVGHFFGAMGTDLWSK 210
Query 333 P-VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 391
+Q + N +I+ T +IL L I +S ++IFDE H+T K HPY I+ +
Sbjct 211 SVWDQHFQKNMVIVCTAEILNQCLLNSYI-KMSQINILIFDEAHHTKKDHPYARIIRDSY 269
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
L P++ G+TAS DEA +L LD+ + T N+ L Q
Sbjct 270 ---LEEVYSKRPRIFGMTASPIDTKGDIVDEA----TRLEKLLDSRIATTS--NMSLLRQ 320
Query 452 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ 511
V +P + + + A + K LE+ FG
Sbjct 321 VARRPVERVWSFN---------------KLEQPFATSLYKHLED-------RFGD----- 353
Query 512 WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFF 571
+ + F E R C + R D ++ ++ + +
Sbjct 354 --MACLEGIFRFAWQASSELGRWCSD----RAWARALADDVLPKLEGSVRKTAN--SETS 405
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 631
SNV + + EI + +T+ E S +PK++ L L + ET I
Sbjct 406 SNVPESAYKEILR-ITEASEIVKSYAFSSPETFGQLSPKVQVLREELARYFGRQTETKCI 464
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGD 690
+F + R L + + FL+PG+L G R +T Q L F+ +G+
Sbjct 465 VFTQKRYTALILAELFQT-LNIPFLRPGVLIGVRSGDLAGMNITFRQQFISLVKFR-TGE 522
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
N L ATSVA+EG+DI CNLV+ ++ +I+ +Q+RGR R S + + +
Sbjct 523 INCLFATSVAEEGLDIPDCNLVVRFDLYQTLIQYVQSRGRARHFNSTYASMVERGNLEHE 582
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE---KFIRDSQEKPKPVPDKENKK 807
+++ ++ M +Q++ + +++L+ H+ +D + + K
Sbjct 583 QRLLEVQDAEM------MQSFCRTLPEDRLLYGFDHDLDTVLQKDEGNRTFRIKSTGAKL 636
Query 808 LLCRKCKALACYTADVR----VIEECHYTVL--GDAFKECFVSRPHPKP 850
LA Y + ++ + Y VL AF C V P P
Sbjct 637 TYHSATAILARYASSLQYEKEFSAQVTYVVLPINGAFV-CEVILPEKSP 684
>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164
/ JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dcl2 PE=3 SV=1
Length=1388
Score = 443 bits (1138), Expect = 2e-135, Method: Composition-based stats.
Identities = 133/577 (23%), Positives = 243/577 (42%), Gaps = 60/577 (10%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
S V+ SP++PRNYQLE+ +MK +N I+ TG GKT +++L + L P +
Sbjct 3 SSVTACQGASPYQPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICPPDK 61
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDII 344
V F A + + QQ V + R ++G + + ++ +I
Sbjct 62 --LVWFLAPTVALCIQQHEVIASNLP--AVRTRTLTGLDKVELWTEQSIWDAVLNGYRVI 117
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLP 403
+ T +L + L G + +S L+IFDE H+ +++H N IM ++ L S G +P
Sbjct 118 VSTHAVLADALSHGFV-KMSRLALLIFDEAHHCTRRHAANKIMRDFYHPTLTKSGPGAVP 176
Query 404 QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK---FF 460
+++GLTAS V + + ++LDA V T + + +EL + ++P ++
Sbjct 177 RIMGLTASPVVR------SNHQELLTVESNLDA-VCRTPRVHRQELVKFTHRPHLQQIWY 229
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ + L E+L D + +++ ++ ++T + C
Sbjct 230 TPTDPAGFKSASQTLGALYHAWETLD---IGDDPYIQRLRKSPLDDTALKKALLTGKTYC 286
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
D I + L + + Y + + R ++ + +D
Sbjct 287 REQLRRFVDRSRHIFEELGEWAAEYYIYASIKQLGDRVR------------NSYMSGDWD 334
Query 581 EIEQDLTQRFEEKLQ--ELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETITILFVKT 636
E E+ F K+ E++ DP + +PK E L L E ++FVK
Sbjct 335 EAEKAYLVDFLSKIPASEIQLALNDPGSFRISPKFESLLNFLDSLDER--EFSGLIFVKQ 392
Query 637 RALVDALKNWIEGNPKLS-FLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFKASGD 690
RA V A+ + + +P + G + + + + Q+ LD F+ SG
Sbjct 393 RATVSAMTSLLSVHPCTRERFRCAAYVGWSNGSASKDILGDLLNMQLQRDTLDDFR-SGR 451
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGV--- 747
N++IAT V +EGIDI+ C++V+ Y+ N+ +Q RGR R + S ++
Sbjct 452 KNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGRARRKQSTFAIMFPTDDASAD 511
Query 748 ------IEKEQINMYKEKMMN-DSILRLQTWDEAVFR 777
+E+ I Y++ S+ L++ DE V
Sbjct 512 VSKWQDLEQAMIEAYQDDERQLQSVSALESLDEEVME 548
>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Aspergillus fumigatus
(strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
OX=330879 GN=dcl2 PE=3 SV=2
Length=1388
Score = 438 bits (1127), Expect = 5e-134, Method: Composition-based stats.
Identities = 133/577 (23%), Positives = 243/577 (42%), Gaps = 60/577 (10%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
S VS SP++PRNYQLE+ +MK +N I+ TG GKT +++L + L +
Sbjct 3 STVSTCQDASPYQPRNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDICSPDK 61
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDII 344
V F A + + QQ V + R ++G + + ++ +I
Sbjct 62 --VVWFLAPTVALCIQQHEVIASNLP--AVRTRTLTGLDKVELWTDQSIWDAVLNGYRVI 117
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLP 403
+ T +L + L G + +S L+IFDE H+ +++H N IM ++ L S +P
Sbjct 118 VSTHAVLADALSHGFV-KMSQLALLIFDEAHHCTRRHAANKIMQDFYHPTLTKSGPAAVP 176
Query 404 QVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK---FF 460
+++GLTAS V + + ++LDA V T + + +EL + ++P ++
Sbjct 177 RIMGLTASPVVR------SNHQELLMVESNLDA-VCRTPRLHRQELLKFTHRPHLQQIWY 229
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ + L E+L D + +++ + ++ ++T + C
Sbjct 230 TPTDPAGFRSASLTLGALYHAWENLD---IGDDPYIQRLRKSPLDDRALKKALLTGKTYC 286
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
D I + L + + Y A +K D ++D + + +D
Sbjct 287 REQLRRFVDRSRHIFEELGEWAAEYYIY---------ASIKQLRDRVRDSYMSGD---WD 334
Query 581 EIEQDLTQRFEEKLQ--ELESVSRDPS--NENPKLEDLCFILQEEYHLNPETITILFVKT 636
E E+ F K+ ++ DP +PK E L L E ++FVK
Sbjct 335 EAEKAYLVDFLSKIPTSDIHFALNDPDGFRISPKFESLLNFLDS--SDQREFSGLIFVKQ 392
Query 637 RALVDALKNWIEGNPKLS-FLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFKASGD 690
R V A+ + + +P + G ++ + + + Q+ LD F+ SG
Sbjct 393 RVTVSAMTSLLSVHPYTRERFRCAAYVGWSNSSASKDILGDLLNMQLQRDTLDDFR-SGR 451
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG---- 746
N++IAT V +EGID++ C++V+ Y+ N+ IQ RGR R + S ++
Sbjct 452 KNLIIATDVLEEGIDLSACSVVVCYDKPPNLKSFIQRRGRARRKQSTFAIMFPTDDTSAD 511
Query 747 -----VIEKEQINMYKEKMMN-DSILRLQTWDEAVFR 777
+E+ I Y++ S+ L++ DE V
Sbjct 512 VSRWQDLEQAMIEAYQDDERQLQSVSALESLDEEVME 548
>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1 / QM 1276 / 107) OX=344612 GN=dcl2 PE=3 SV=1
Length=1389
Score = 422 bits (1085), Expect = 5e-128, Method: Composition-based stats.
Identities = 126/586 (22%), Positives = 248/586 (42%), Gaps = 61/586 (10%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
S V + + ++ RNYQLE+ +MK +N I+ TG GKT +++L + L P
Sbjct 2 SSAVPTNSDAAAYQARNYQLEMLEASMK-ENIIVAMDTGSGKTHIAVLRIKAELDSCPPD 60
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDI 343
+ + F A + + QQ V + R ++G + + I+++ +
Sbjct 61 KI--IWFLAPTVALCTQQHKVIASNLPAVQTR--TLTGLDKVELWTEQAIWDAILKDVRV 116
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG-SSGPL 402
++ T +L + L G + +S L+IFDE H+ ++H N IM ++ + +
Sbjct 117 VVSTYAVLADALSHGFM-RMSRLALIIFDEAHHCMRKHAANKIMQDFYHPTVSKFGPSAV 175
Query 403 PQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF--- 459
P+++GLTAS V + + + + +LDA V T + + +EL + ++P+
Sbjct 176 PRIMGLTASPVVRSNR------EELFTIETNLDA-VCKTPRAHRQELLKFSHRPELKQLL 228
Query 460 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA 519
+ + + L+ E+L +D + +++ E+ ++T +
Sbjct 229 YEPPDPMGLQVSSQTLRALIEAWETLD---IEDDPYVKRLRKSSLDGGALEKALMTGKTF 285
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
C D I + L + + Y + ++ +
Sbjct 286 CREQLKRFVDRSRHIFEELGEWAADYYIYTSIQHLKTRV------------QTSYMTGDW 333
Query 580 DEIEQDLTQRFEEKLQ--ELESVSRDPS--NENPKLEDLCFILQEEYHLNPETITILFVK 635
DE E+ F KL +++ D + +PKLE L L +PE ++FVK
Sbjct 334 DEAERAYLVSFLSKLPAADIQITLSDAACLRISPKLEALIGFLDA--MDDPEFSGLIFVK 391
Query 636 TRALVDALKNWIEGNPKLS-FLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFKASG 689
RA V + + + +P+ + G ++ + +++ Q LD F+ SG
Sbjct 392 QRATVSVMTDLLAVHPRTRERFRSAAYVGWSNSSGSKDFLGNLLSMHGQLSTLDDFR-SG 450
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
N++IAT V +EGIDI+ C++V+ Y+ N+ +Q RGR R + S ++ E
Sbjct 451 HKNLIIATDVLEEGIDISACSVVVCYDKPPNLKSFVQRRGRARQKQSTYAIMFP----AE 506
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQE 795
++ K + + +++ DE H+Q+ + R ++E
Sbjct 507 DSAFDLAKWQTLEQAMIEAYQDDE-------RHLQSAIELERVNEE 545
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis
(strain RS) OX=246410 GN=DCL1 PE=3 SV=3
Length=1500
Score = 419 bits (1077), Expect = 3e-126, Method: Composition-based stats.
Identities = 137/688 (20%), Positives = 259/688 (38%), Gaps = 81/688 (12%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
K+ +F EL + +++ ED+++ ++ + ++ NL S + D
Sbjct 47 RKQNLRFKEL--LSARAEEITAEDIKEVIKATK-----DDELSMSNLLAKQDFASVIHD- 98
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKG 291
PR YQ+EL A K N I TG GKT +++L+ +H L +
Sbjct 99 -------PREYQVELFEKAKKD-NIIAVLDTGSGKTLIAVLLLKHIIEQELIDRSAEKPH 150
Query 292 KV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAEN-VPVEQIVENNDIIILTPQ 349
+V F + + + QQ +V + + G N E+ + N +I+ T +
Sbjct 151 RVSFFLVDSVTLVFQQAAVLQNNINQRVDKFCGAMETDLWNGETWERHLAKNMVIVCTAE 210
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 409
+L L + + L+IFDE HN K HPY I+ ++ L + P++ G+T
Sbjct 211 VLYQCLLHAFV-KMENINLLIFDEAHNAKKDHPYARIVKDFY---LKDGNAKRPKIFGMT 266
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
AS + L L++ + NL L Q V +P + + R+
Sbjct 267 ASPVDAKMD----VVKAARNLETLLNSQIATAS--NLSLLRQSVPRPNEEVWSYD-RLDQ 319
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
F+ + + +R + + K L S + G + + ++ +
Sbjct 320 PFETRLYKELRSRFGDLRALEK-LFTFSLKASSNLGAWCADWVWSYALTEESLPKLEGRA 378
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
R L I++ R + + +++ +R+ F +
Sbjct 379 A---------------RTAMGNLPIAKIVRPEAEIQRIREASEIIRSHKFGDP------- 416
Query 590 FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG 649
+ P +PK+ L L + + + +T I+F + R L +
Sbjct 417 -----------AVRPELLSPKVRRLHHELLKYFERHTDTKCIVFTEQRHTARILCDLFSR 465
Query 650 NPKLSFLKPGILTG-RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 708
L+PG+L G R + ++ Q + +F+ G+ N L ATSVA+EG+DI
Sbjct 466 I-GTKHLRPGVLIGVRSDASGGMNISFRQQVLAVVSFR-KGEVNCLFATSVAEEGLDIPD 523
Query 709 CNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
CNL++ ++ + + IQ+RGR R S L + +E +N + S +
Sbjct 524 CNLIVRFDLASTLTQYIQSRGRARHMNSTFAHLVERDNFVHRESVNHLQ-----SSEEIM 578
Query 769 QTWDEAVFREKILHIQTHEKFIRDSQ-EKPKPVPDKENKKLLCRKCKALACYTADVRVIE 827
+ + ++ +++IL+ + + K V K LA + ++ +
Sbjct 579 KRFCISLPKDRILNSDDVDALYESDRNRKSYTVQTTGAKLTYSSSLVVLAHFANSLQYEK 638
Query 828 ECHYTV-----LGDAFKECFVSRPHPKP 850
E V C V P P
Sbjct 639 ETSTVVSYYHRFTKNAFVCEVVLPEKSP 666
>sp|Q0CEI2|DCL2_ASPTN Dicer-like protein 2 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) OX=341663 GN=dcl2 PE=3 SV=2
Length=1377
Score = 409 bits (1052), Expect = 2e-123, Method: Composition-based stats.
Identities = 124/569 (22%), Positives = 237/569 (42%), Gaps = 64/569 (11%)
Query 229 PSEVSDTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ 287
+ +SD +L F PRNYQ E+ +++ +N I+ TG GKT V+LL + L+
Sbjct 1 MASLSDQDLEMGLFCPRNYQTEMFEASLQ-ENIIVAMDTGSGKTHVALLRIMNELETRRP 59
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENND 342
+ + F A + + QQ V +K R ++G + + I+++
Sbjct 60 QK--LIWFLAPTVALCFQQHDVITKNLPAVKSR--TLTGQDKVELWTEQAIWDAILKDMQ 115
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL-GGSSGP 401
+++ T +L + + G + +S L+IFDE H+ ++HP N IM ++ L
Sbjct 116 VVVSTHAVLADAMSNGFV-RVSQLGLLIFDEAHHCMRRHPANRIMQDFYHPTLVKQGPDA 174
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK--- 458
+P ++GLTAS V + + ++++A + T + + +EL ++P
Sbjct 175 VPGILGLTASPVVRTNS------QELSMIESNMNA-ICKTPRAHRQELLTHTHRPHLQQI 227
Query 459 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQK 518
++ V + L+ E++ +D + Q++ F + ++ ++T +
Sbjct 228 WYTPVNIDDPTSGTRTLRALIHAWETID---LEDDPYVKQLRRSTFDGKALQKALLTRKT 284
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM--------KDALDYLKDF 570
C + I + L + + + E + +YL F
Sbjct 285 YCNESLRRFVERSCHIFQELGGWAVDYFIHASIRRLREKIDDSALMLDWDNEEKEYLASF 344
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
SN+ I+ D +R E+ + +PKLE L L +
Sbjct 345 LSNIAT-----IQSDPPRRPEDFIP------------SPKLEALISFLSS--TDDSTFSG 385
Query 631 ILFVKTRALVDALKNWIEGNPKLS-FLKPGILTGRGKTNQNTGM-----TLPAQKCILDA 684
++F K RA V L + +P + G + ++ Q+ L
Sbjct 386 LIFAKQRATVTVLATLLSVHPLTKDRFRCAAFVGWSGGGNRKDLIGELLSMQMQRDTLSE 445
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN 744
F+ SG N+++AT V +EGIDI+ C++VI Y+ NV +Q RGR R + S +L S
Sbjct 446 FR-SGQKNLIVATDVLEEGIDISACSVVICYDKPANVKSFVQRRGRARRKESTFAILFST 504
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDE 773
E ++ K +++ ++++ DE
Sbjct 505 DD----ELCDLRKWQLLEEAMIEAYQDDE 529
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL3A PE=2 SV=1
Length=1651
Score = 413 bits (1061), Expect = 3e-123, Method: Composition-based stats.
Identities = 120/536 (22%), Positives = 231/536 (43%), Gaps = 46/536 (9%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQ 299
F PR YQL++ AM+ +NTI TG GKT +++++ + K GK ++F A
Sbjct 30 FTPRRYQLDVYEVAMR-RNTIAMLDTGAGKTMIAVMLIKEFGKINRTKNAGKVIIFLAPT 88
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAE-NVPVEQIVENNDIIILTPQILVNNLKKG 358
+ + QQ V + + + G G ++ + ++++TPQ+ + L+
Sbjct 89 VQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWTGPRWQEQISKYQVMVMTPQVFLQALRNA 148
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV-GDA 417
+ L + +LMIFDECH+ + HPY IM + + S P V G+TAS +
Sbjct 149 FLI-LDMVSLMIFDECHHATGNHPYTRIMKEFYHK-----SEHKPSVFGMTASPVIRKGI 202
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR------ISDKF 471
+ + C+L LDA + + EE+E V ++ R +S+ +S++
Sbjct 203 SSHLDCEGQFCELENLLDAKIYTVS--DREEIEFCVPSAKEMCRYYDSKPVCFEDLSEEL 260
Query 472 KYIIAQ---LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF---QM 525
+ ++ L+ + ++ + KD +++++ R ++ K C +
Sbjct 261 GVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSK--------SIAKICYCLDDVGL 312
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
E ++IC L++ DA + + + ++ S + F+E
Sbjct 313 ICASEATKICIERGQEKGWLKEVVDAT--DQQTDANGSRLFAEN--SALHMKFFEEALHL 368
Query 586 LTQRFEEKLQELESV------SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
+ +R ++ + L + + +PKL +L I + + ++FV +
Sbjct 369 IDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHS-FSNSRHARCLIFVDRKIT 427
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ I+ L+ LTG + +T QK LD+F+ SG N+L T V
Sbjct 428 ARVIDRMIKKIGHLAHFTVSFLTG--GRSSVDALTPKMQKDTLDSFR-SGKVNLLFTTDV 484
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM 755
A+EGI + +C+ VI ++ +Q+RGR R S+ L+ V + + I+
Sbjct 485 AEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISA 540
>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) OX=510516 GN=dcl2 PE=3 SV=1
Length=1377
Score = 409 bits (1051), Expect = 3e-123, Method: Composition-based stats.
Identities = 124/562 (22%), Positives = 238/562 (42%), Gaps = 67/562 (12%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+KPR YQ E+ ++K +N I+ TG GKT ++LL H L+ G + F +
Sbjct 14 YKPRQYQYEMFEASLK-ENIIVAMDTGTGKTQIALLRIAHQLEG--GGPRKLTWFLTPTV 70
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDIIILTPQILVNNL 355
+ QQ V + R I+G ++++++ +++ T +L L
Sbjct 71 ALCLQQYEVIRSHLP--AVRACTITGLDKVERWKSQYIWDELLKDKQVVVSTHAVLFEAL 128
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG-SSGPLPQVIGLTASVGV 414
G + +S L+IFDE H+ ++HP NMIM ++ L +P ++GLTAS V
Sbjct 129 THGFV-RISQLGLLIFDEAHHCMRRHPANMIMLDFYHPTLRKHGRDSVPCILGLTASPVV 187
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
+ L+ ++LD S+ T + + +EL ++P+ ++
Sbjct 188 RSKSQEMKTLE------SNLD-SICKTPQVHKQELTTYAHRPELLPIICKAIDEGPGGRA 240
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV-----------TVQKACMVF 523
+ L ++ I D + + Q + G+ +Y+ +V V ++ +F
Sbjct 241 LQALEHAWDT--ADIDGDPDAIPQNGSLLNGSGEYKALMVRKTLCNEQIKRFVDRSRHIF 298
Query 524 -QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
++ + + IC ++ + +R + + + R YL +F S + A E+
Sbjct 299 AELGEWAADYYICTSVEQLRTTIRDQSLTMDWEDEERA-----YLSNFLSKLPVA---EV 350
Query 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDA 642
+ +L + +PKL L L + +PE ++FVK R V
Sbjct 351 QANLADPNNFTM-------------SPKLAALINFLDK--FDDPEFSGLIFVKQRVTVSV 395
Query 643 LKNWIEGNPKLS-FLKPGILTGRGKTNQNTGM-----TLPAQKCILDAFKASGDHNILIA 696
L + +P+ + G + M Q+ +D F+ SG N+++
Sbjct 396 LARLLSLHPQTRDRFRCAAYVGMSVGSCRQDMVGDWHNAKKQRGTMDDFR-SGRKNLIVT 454
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
TSV +EGID+ C +V+ ++ N+ IQ RGR R + S ++ S A E ++
Sbjct 455 TSVLEEGIDVTACRVVVCFDKPANLKSFIQRRGRARQQKSTYAIMFSTAD----EHGDLR 510
Query 757 KEKMMNDSILRLQTWDEAVFRE 778
+ +++ +++ +E RE
Sbjct 511 RWQILEQAMVEAYQDEERRLRE 532
>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica
OX=5116 GN=DCL-2 PE=3 SV=1
Length=1451
Score = 406 bits (1042), Expect = 1e-121, Method: Composition-based stats.
Identities = 144/593 (24%), Positives = 250/593 (42%), Gaps = 56/593 (9%)
Query 219 CQNLSENSCPPSEVSDTNLYSP----FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
+LSE P + R YQLE+ ++K +N I TG GKT V+
Sbjct 35 DGHLSEEDSPGGKPRPKEQLPKDIVKMDARAYQLEMLEASLK-ENIICAMDTGSGKTHVA 93
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP- 333
+L + L++ P+GQ V F + + QQ +V ++ ++GA +
Sbjct 94 ILRIKAELEEMPEGQ--VVWFLTPTVSLCAQQYAVVKAQIPSVQTKI--VTGADKVDSWS 149
Query 334 ---VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 390
+ + N +II TPQ+L++ L G + +S LM+FDE H+ +K H Y+ +M +
Sbjct 150 STTWDGALLNVKVIITTPQVLLDALLHGFVN-ISSLALMVFDEAHHCNKNHAYSRVMKEF 208
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE 450
+ P+P+++GLTAS V + + +L ++LDA V + + EEL
Sbjct 209 YWES-KTKHEPVPRILGLTASPVVR------SDISSLKRLESTLDA-VCRSPTRHREELI 260
Query 451 QVVYKPQKFFRKVESRISD---KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+P F ++ F + +LM A+ LE+ + R +
Sbjct 261 ANSQRPALFSIIYNPKLQPYAAGFSESLTKLMA-----ARNKLNILEDPYVVSLRAEISD 315
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
+ + ++KA + +D C+ L + ISE R+ A Y
Sbjct 316 RSRR---KLEKAIKEKRTYVQDTMKSFCRRSMEMAKELGAWAADWFISEAIRLFLAGIYR 372
Query 568 KDFFSNVRAAGFDEIEQDLTQR-FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
+ S F + E R F++ E S + K++ + +L +
Sbjct 373 QGASSK----SFRDAEVIFLARVFQDANIEPPPPLTTHSGLSEKVQRIIEVLLNY---DK 425
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSF-LKPGILTGRG--KTNQNTGMTLPAQ--KCI 681
+ I FVK RA L + + +P++S + G + G + + LP
Sbjct 426 DARAICFVKERATTVVLSHILTTHPEVSSKFRIGTMVGTSFVPGVKRDFLDLPETGGSQC 485
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L+AF+ G N+L+ATSV +EGID+ CNL+I ++ N+ IQ RGR R R S +L
Sbjct 486 LEAFR-EGRKNMLVATSVLEEGIDVPACNLIICFDKPNNLRAFIQRRGRARMRQSHLYLF 544
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
+ + E + ++ ++LQ DE E++ I+ E +
Sbjct 545 VEDEAEADWEAL---------EAQMKLQYEDEKREHERLEAIENSEALDYPEE 588
>sp|Q1DY43|MPH1_COCIM ATP-dependent DNA helicase MPH1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=MPH1 PE=3 SV=1
Length=1110
Score = 398 bits (1022), Expect = 5e-121, Method: Composition-based stats.
Identities = 126/674 (19%), Positives = 240/674 (36%), Gaps = 68/674 (10%)
Query 214 QEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV 273
+ +P + + + NL S R YQ +A A+ N ++ PTG GKTF+
Sbjct 298 RNEPPTHHELNKDALRTWIFPKNLGSR---REYQFNIAHRAL-FHNLLVALPTGLGKTFI 353
Query 274 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ + L F + ++VF A P+ QQ + T ++G T V
Sbjct 354 AATVM---LNWFHWTKDAQIVFVAPTKPLVSQQVDACFHIAGIPRSQTTLLTGNTPPGVR 410
Query 334 VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 393
E+ + + +TPQ ++N+LK G I L++ DE H + + Y I+
Sbjct 411 AEE-WRSKRVFFMTPQTIMNDLKTG-IADPKRIVLLVVDEAHRATGAYAYVEIV------ 462
Query 394 KLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVV 453
K +V+ LTA+ G ++ + ++ L S I ++ V
Sbjct 463 KFLQRFNNSFRVLALTATPGAT--------VEAVQEVIDGLSISRIEIRTEKSLDIRGFV 514
Query 454 YKPQKFFRKVES-----RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
++ E+ + F + ++ + +D L+ T+
Sbjct 515 HQRNVETITFENSRDMITSMELFAKALQPVVDRLRNQNAYWGRDPMALTPFGL----TKA 570
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
++W + + + A + L KY+ + L +
Sbjct 571 RQEWNSSPAGRAASWPVKGTINSMFTVLASLAHAIDLLKYHGIGPFYRN------LVSFE 624
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEY----- 622
D + G + F+ + +L S + +PKLE L + +
Sbjct 625 DSVLKEKKGGKCASQIVADGNFKVLMSKLRSWTNTEEFIGHPKLEYLRRAILNHFLDAGG 684
Query 623 -------HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+ T ++F R + + + + F++P + G+ + GM
Sbjct 685 KNGGDSEGSDSNTRVMIFSHFRDSAEEIVRVLRKHQ--PFVRPHVFVGQANAKGSEGMDQ 742
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
Q ++ FK +G +N ++ATS+ +EG+DI + +L+I Y+ + I+M+Q GR GR R
Sbjct 743 KTQLEVVGKFK-TGTYNTIVATSIGEEGLDIGEVDLIICYDGHSSPIRMLQRMGRTGRKR 801
Query 735 GSKCFLLTSNAGVIE-----KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
LL S E K+ ++ + + S T + + + + EK
Sbjct 802 AGNIILLLSKGKEEESYSKAKDSYEKMQQLIASGSRFTFHTDKSSRIVPQDIQPEAEEKM 861
Query 790 IRDSQEK-----PKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDA---FKEC 841
I E P+P K +K T ++
Sbjct 862 IEIPIENSQLGLPEPAKRSRAPKRPPKKFHMPDGVEKGFTKASRLGRTNTDSNGRSKRKR 921
Query 842 FVSRPHPKPKQFSS 855
V P P+ ++F
Sbjct 922 VVRTPSPELEEFPD 935
>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL1
PE=3 SV=2
Length=1522
Score = 404 bits (1037), Expect = 1e-120, Method: Composition-based stats.
Identities = 129/577 (22%), Positives = 240/577 (42%), Gaps = 58/577 (10%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
Q + N + S S PR+YQ+EL L A K +NTI TG GKT
Sbjct 39 DQATSKIANEGQLSIRDILASQDTAVRITNPRDYQMELFLRA-KMQNTIAVLDTGTGKTH 97
Query 273 VSLLICEH----HLKKFPQGQKGKVVFF-ANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
++ L+ H L+ +G K+ FF + + + QQ +V ++ ++G G
Sbjct 98 IATLLLRHVLEEELENRAKGCAHKMAFFLVDSVNLVFQQANVLRCGLDQGVEGISGAMGQ 157
Query 328 T-AENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMI 386
+ + +++ N +I+ T Q+LV+ + + S+S L+IFDE H+ HPY +
Sbjct 158 SLFQKQTWDKLFAVNMVIVCTAQVLVDCMMHSFM-SISRMNLLIFDEAHHAKSNHPYARV 216
Query 387 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNL 446
M +Y +L S P++ +TAS ++ + + +L L + + T L
Sbjct 217 MKDYYAHELDTS--KRPRIFAMTASPVDVKGQSAEHVREAARELETLLHSRIATTSDSAL 274
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+ +P++ V +R+ ++F+ + Q ++ K L +++ E G
Sbjct 275 A--RNSITRPEEEVA-VYTRLRNEFETPLHQKVKAKYGDVAPFRK-LFITAKLHASELGR 330
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
+ + F D+ + Y R ++ A + ++ AR+K+A +
Sbjct 331 WASDMYW--------SFAFADEQSRKLQIREELKYNRSKRDWSAAELDAQMARLKEATAF 382
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
++ + E+ + + + + K+ L + L Y
Sbjct 383 VQQY-------------------------EIGAPTLSEQDLSSKVMKLQYWLNLYYERTT 417
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+FV+ R LK I + L +L G ++L +Q L F+
Sbjct 418 LARCIVFVEKRHTAQLLK-LIFDHIGGPNLHCDVLVGINNRAGEENVSLRSQILTLQKFR 476
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG 746
G+ N L ATSVA+EG+DI QCNLV+ ++ +I +Q+RGR R R SK +
Sbjct 477 R-GELNCLFATSVAEEGLDIPQCNLVVRFDLYRTMIGYVQSRGRARHRNSKYLHMLEAEN 535
Query 747 VIEKEQINMYK--EKMMNDSILRLQTWDEAVFREKIL 781
E++ + E +M + + + + ++ L
Sbjct 536 KEHTERLMNARHDENIMRE-------FCKDLTHDRQL 565
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis
thaliana OX=3702 GN=At3g03300 PE=1 SV=2
Length=1388
Score = 399 bits (1024), Expect = 2e-119, Method: Composition-based stats.
Identities = 128/565 (23%), Positives = 229/565 (41%), Gaps = 37/565 (7%)
Query 224 ENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ +E +D SP R+YQ+E A+K +NTI+ TG GKT +++++ +
Sbjct 4 DADAMETETTDQVSASPLHFARSYQVEALEKAIK-QNTIVFLETGSGKTLIAIMLLRSYA 62
Query 283 KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENN 341
F + VF Q+ + QQ + + G G ++ +Q V+
Sbjct 63 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 122
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
+++++TP IL++ L+ + SLS+ ++I DECH+ +HPY IM + ++L +
Sbjct 123 EVLVMTPAILLDALRHSFL-SLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSN 181
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
+P++ G+TAS+ +N D I +L +++ V N L V F+
Sbjct 182 VPRIFGMTASLVKTKGENLDSYWKKIHELETLMNSKVYTC--ENESVLAGFVPFSTPSFK 239
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV-TVQKAC 520
Q ++ + + LE L+ GT V +V+K
Sbjct 240 YY-------------QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRL 286
Query 521 MVFQ--MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
+ + ++ I A S ND+ + E AL +K F S+
Sbjct 287 LRISSTLTYCLDDLGILLAQKAAQSLSASQNDSFLWGELNMFSVAL--VKKFCSDASQEF 344
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
EI Q L + + + K L L Y I+FV
Sbjct 345 LAEIPQGLNWSVAN-----INGNAEAGLLTLKTVCLIETLLG-YSSLENIRCIIFVDRVI 398
Query 639 LVDALKNWIEGN-PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
L++ + P + K + G QN T Q I++ F+ G NI++AT
Sbjct 399 TAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQ--TRKKQNEIVEDFRR-GLVNIIVAT 455
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY- 756
S+ +EG+D+ CNLVI ++ N+ IQ+RGR R + S ++ + ++ + ++ Y
Sbjct 456 SILEEGLDVQSCNLVIRFDPASNICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYL 515
Query 757 -KEKMMNDSILRLQTW-DEAVFREK 779
K M + L + +
Sbjct 516 SGGKRMREESLDHSLVPCPPLPDDS 540
>sp|Q2HG76|MPH1_CHAGB ATP-dependent DNA helicase MPH1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=MPH1 PE=3 SV=1
Length=1134
Score = 391 bits (1005), Expect = 2e-118, Method: Composition-based stats.
Identities = 131/676 (19%), Positives = 251/676 (37%), Gaps = 63/676 (9%)
Query 198 EDLEDKMETSDIQIFYQEDPE---CQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
ED + + + F + P + ++ + V NL + R+YQ +
Sbjct 142 EDRVAGSQAPNSRPFRADLPPETPTHHELQHDELSTWVYPLNLGA---IRDYQFSIVKNG 198
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ NT++ PTG GKTF++ I L F ++ K+VF A P+ QQ
Sbjct 199 L-FHNTLVALPTGLGKTFIAATIM---LNYFRWTKRSKIVFVAPTKPLASQQVQACLGIA 254
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ T ++G T + + E+ + +TPQ L+N+L KG SI L++ DE
Sbjct 255 GIPRSQATLLTGETPPVLRQGE-WESKRLFFMTPQTLMNDLSKGYADPKSIV-LLVVDEA 312
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
H + + Y ++ ++ + +++ LTA+ G ++ + + +L
Sbjct 313 HRATGDYAYVKVV-EFIRRFSKSI-----RILALTATPG--------STVEGVQDIIDNL 358
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESR-----ISDKFKYIIAQLMRDTESLAKRI 489
S + ++ Q V+ + + F + L+ +
Sbjct 359 GISHVEIRTEESIDIRQYVHSRNIDTVTFDPSDEMHEVRGLFSKALKPLVDKLSAQNIYY 418
Query 490 CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 549
+D NL+ FG K Q + P + + S L+
Sbjct 419 GRDPMNLT-----TFGLLKSRQEWLAG---------PGGHANQGVKFMMMAVFSILQSLA 464
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR-----DP 604
+ + +K + L +F S+ + +E Q + ++ +
Sbjct 465 HLIKLLNFHGIKPFYNGLAEFRSSEEGKPGQGSKLKRQLLADESFQRMMALIERWMRMEE 524
Query 605 SNENPKLEDLCFILQEEYHLNPE---TITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
N +PKL LC L + E T I+F + R + + + P ++ +
Sbjct 525 FNGHPKLTYLCETLVNHFIDAGENSNTRAIVFSEYRDSAEEIVRLLNNQP---LIRATVF 581
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G+ + ++ GM Q ++ FK G N+L+ATS+ +EG+DI Q +L++ Y+ +
Sbjct 582 VGQADSKRSEGMKQKQQIETIEKFKNGG-FNVLVATSIGEEGLDIGQVDLIVCYDASASP 640
Query 722 IKMIQTRGR-GRARGSKCFLLTSNAGVIE-----KEQINMYKEKMMNDSILRLQTWDEAV 775
I+M+Q GR GR R LL E K+ ++ + N +
Sbjct 641 IRMLQRMGRTGRKRAGNIVLLLMKGKEEEKFLEAKDNYQKMQQLICNGDGFTFRHDLSTR 700
Query 776 FREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG 835
+ + + ++ + E + E KK K +A ++ E + L
Sbjct 701 IVPRDIRPEVDKRHVDIPIENSQNTSLPEPKKTAAGLRKKVAKKKFNMPDDVETGFVNLK 760
Query 836 DAFKECFVSRPHPKPK 851
+F R PK
Sbjct 761 ASFFGQPAERAANIPK 776
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis
thaliana OX=3702 GN=DCL1 PE=1 SV=2
Length=1909
Score = 399 bits (1025), Expect = 9e-118, Method: Composition-based stats.
Identities = 141/676 (21%), Positives = 250/676 (37%), Gaps = 85/676 (13%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH-HLKKFPQGQKGKVVFFANQI 300
+ R YQL++ A K KNTI TG GKT +++L+ + H Q +K VF ++
Sbjct 248 QARRYQLDVLEQA-KAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRKMLSVFLVPKV 306
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGAT-AENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P+ QQ V G G ++ ++ E+ ++++T QIL+N L+
Sbjct 307 PLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHSI 366
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG-VGDAK 418
I + L+I DECH+ K+HPY+++M + P + G+TAS +
Sbjct 367 I-RMETIDLLILDECHHAVKKHPYSLVMSEFYHTT---PKDKRPAIFGMTASPVNLKGVS 422
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD-KFKYIIAQ 477
+ + I L LD++V + +ELE+ V P + + + + I Q
Sbjct 423 SQVDCAIKIRNLETKLDSTVCTI--KDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQ 480
Query 478 LMRDTESLAKRICKDLE--------------------------------NLSQIQNREFG 505
++ E A+ + + + +++ +
Sbjct 481 MIAAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYT 540
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+ QW + + DE + S+L + +L+ E A
Sbjct 541 LAELGQWCAYKVGQSFLSALQ-SDERVNFQVDVKFQESYLSEVV-SLLQCELLEGAAAEK 598
Query 566 YLKDFFSNVRAAGFDEIEQ-----DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
+ DE+E+ D E + E+ + PK++ L +L +
Sbjct 599 VAAEVGKPENGNAHDEMEEGELPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLK 658
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
Y + I+FV+ L P LSF++ + G + M +
Sbjct 659 -YQHTADFRAIVFVERVVAALVLPKVFAELPSLSFIRCASMIGHNNSQ---EMKSSQMQD 714
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
+ F+ G +L+ATSVA+EG+DI QCN+V+ ++ V+ IQ+RGR R GS L
Sbjct 715 TISKFR-DGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYIL 773
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR--------- 791
+ V + ++ LR EA+ R + H++ + I
Sbjct 774 MVERGNV---SHAAFLRNARNSEETLR----KEAIERTDLSHLKDTSRLISIDAVPGTVY 826
Query 792 DSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPK 851
+ V L+ C L Y +L F H KP
Sbjct 827 KVEATGAMVSLNSAVGLVHFYCSQL----------PGDRYAILRPEFS----MEKHEKPG 872
Query 852 QFSSFEKRAKIFCARQ 867
+ + R ++ C
Sbjct 873 GHTEYSCRLQLPCNAP 888
>sp|A2R345|DCL21_ASPNC Dicer-like protein 2-1 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl2-1 PE=3 SV=2
Length=1387
Score = 391 bits (1005), Expect = 8e-117, Method: Composition-based stats.
Identities = 108/560 (19%), Positives = 215/560 (38%), Gaps = 40/560 (7%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
+ + ++PR+YQ+E+ ++K +N I+ TG GKT ++LL L+ P
Sbjct 6 TVLPAGEDAPAYRPRSYQVEMFEASLK-ENIIVTMGTGSGKTHIALLRIIKELESNPHK- 63
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA---TAENVPVEQIVENNDIIIL 346
+ F + + QQ S R E + I++ +++
Sbjct 64 --LIWFLTPTVALCLQQFKFLSDNIPAVRARTLTSLDKVELWTEQPVWDAILKEMQVVVS 121
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG-SSGPLPQV 405
T +L + + G + ++ LMIFDE H+ ++HP N IM ++ L + +P++
Sbjct 122 THAVLADAMSHGFV-KITQLGLMIFDEAHHCMRRHPANKIMQDFYHPALERHGAEAVPKI 180
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+GLTAS V + + K+ ++LDA V T + + EL ++P
Sbjct 181 LGLTASPVVRSNR------QELLKIESNLDA-VCKTPRTHRSELMTHTHRPHLQQILFTP 233
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
+ D + L + +D + +++ + ++ + + + C
Sbjct 234 VLLDDLQVGSKTLKALVSAWTSLRLEDDPYIKKLRKSPLDGRALQKVLESGKTYCNDQLK 293
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
I + L + + + + A ++ +E
Sbjct 294 RFATRSLHIFEELGEWAADYFIHASIEQLKARA----------GNSADTMGWTDEEKAYL 343
Query 586 LTQRFEEKLQELESVSRDPS--NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
L + + ++ DP + K L L + P ++F K RA V +
Sbjct 344 LDIVSKLPIPNIDLTHSDPDRIPISSKFRSLLEFLDTKGE--PNFSGLIFAKQRATVSVM 401
Query 644 KNWIEGNPKLSF-LKPGILTGRGKTNQ----NTGMTLPAQKCILDAFKASGDHNILIATS 698
+ + +P + G + Q+ L F+ +G N++IAT
Sbjct 402 EKLLSIHPVTKHRFRCASFVGWSGGGSKDVLGELLDARMQRDTLSEFR-TGQKNLIIATD 460
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
V +EGIDI+ C++V+ ++ N+ +Q RGR R R S ++ + E + K
Sbjct 461 VLEEGIDISACSVVVCFDKPPNLKSFVQRRGRARHRQSTYAIMFATDD----ESSALSKW 516
Query 759 KMMNDSILRLQTWDEAVFRE 778
+ + +++ DE RE
Sbjct 517 EDLEQAMIEAYEDDERRLRE 536
>sp|Q7SDF3|MPH1_NEUCR ATP-dependent DNA helicase mph1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1
Length=1168
Score = 386 bits (992), Expect = 2e-116, Method: Composition-based stats.
Identities = 123/641 (19%), Positives = 242/641 (38%), Gaps = 69/641 (11%)
Query 198 EDLEDKMETSDIQIFYQEDPECQ---NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
ED + + + F + P Q + + + V NL R+YQ +
Sbjct 110 EDAQPAPQAVSNRPFRADMPPEQPTHHEIDIEEMKTWVYPMNLGP---IRDYQFSIVKNG 166
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ NT++ PTG GKTF++ I ++++ + K VF A P+ QQ
Sbjct 167 LFN-NTLVALPTGLGKTFIAATIMLNYIR---WTKTAKAVFVAPTKPLASQQVQACLSIA 222
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ T ++G T + ++ + +TPQ L+N+L KG SI L++ DE
Sbjct 223 GIPRSQATLLTGETPPVLREDE-WATKRLFFMTPQTLMNDLSKGYADPKSIV-LLVIDEA 280
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
H + + Y ++ + +++ LTA+ G +L+ + + +L
Sbjct 281 HRATGDYAYVKVV------EFLRRFSKSFRILALTATPG--------SSLEGVQDVIDNL 326
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESR-----ISDKFKYIIAQLMRDTESLAKRI 489
S + ++ Q V+ + + D F + L+ S
Sbjct 327 GISHVEIRTEESIDIRQYVHSRDINTITFDPSDEMMEVRDLFSKALKPLVTKLSSQNIYY 386
Query 490 CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 549
+D +L+ + W+ P + ++ + L+
Sbjct 387 GRDPMSLTTYGLM----KARNDWMAG----------PGRHVNQGTKFSVIATFAILQSLA 432
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR-----DP 604
++ + +K + L +F + G + +E Q++ + D
Sbjct 433 HSIKLLNFHGIKPFYNNLAEFRTTEEEKGGKGSKLKRQVLEDENFQKMMDMIEGWMKIDG 492
Query 605 SNENPKLEDLCFILQEEYHLNPE---TITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+PKLE LC L + E T I+F + R + + + P +K +
Sbjct 493 FLGHPKLEYLCETLVNHFMDAGEGSNTRAIVFSEYRDSAEEIVRILNKQP---LIKATVF 549
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G+ + ++ GM Q ++ FK +G HN+L+ATS+ +EG+DI Q +L++ Y+ +
Sbjct 550 VGQADSKRSEGMKQKQQIETIEKFK-NGAHNVLVATSIGEEGLDIGQVDLIVCYDASASP 608
Query 722 IKMIQTRGR-GRARGSKCFLLTSNAGVIE-----KEQINMYKEKMMNDSILRLQTWDEAV 775
I+M+Q GR GR R LL + K+ + + S + +
Sbjct 609 IRMLQRMGRTGRKRAGNIVLLLMKGKEEDKFNEAKDNYATMQRMICEGSRFTFRHDLSSR 668
Query 776 FREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKAL 816
+ + + +K + P+ + +N +L K A
Sbjct 669 IVPRDIRPEVEKKVVEI------PLENSQNPELPEPKRSAA 703
>sp|A4RN08|MPH1_PYRO7 ATP-dependent DNA helicase MPH1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=MPH1 PE=3 SV=1
Length=1102
Score = 385 bits (988), Expect = 3e-116, Method: Composition-based stats.
Identities = 120/636 (19%), Positives = 234/636 (37%), Gaps = 64/636 (10%)
Query 203 KMETSDIQIFYQEDPE---CQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
+ + ++F + P + + + V TNL R+YQ + + N
Sbjct 100 GTQPRNSRVFRADLPPEVPTHHALDPEALKTWVYPTNLGP---IRDYQFSIVKNGLFN-N 155
Query 260 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY 319
T++ PTG GKTF++ + L F + ++VF A P+ QQ
Sbjct 156 TLVALPTGLGKTFIAATVI---LNFFRWTRNAQMVFVAPTKPLASQQVEACLNIAGIPRS 212
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 379
+ T ++G T + E E + +TPQ L+N+L KG I L++ DE H +
Sbjct 213 QSTLLTGETKPVLR-EAEWEGKRLFFMTPQTLMNDLSKGYADPKRIV-LLVVDEAHRATG 270
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
+ Y ++ ++ + +V+ LTA+ G ++ + + +L S +
Sbjct 271 DYAYVKVI-EFIRRF-----SKSFRVLALTATPG--------STVEGVQDVIDNLGVSHV 316
Query 440 ATVKHNLEELEQVVYKPQKFFRKVES-----RISDKFKYIIAQLMRDTESLAKRICKDLE 494
++ V+ + +E RIS+ F + L I +D
Sbjct 317 EIRTEESIDIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKIYIGRDPM 376
Query 495 NLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALII 554
+++ FG K Q + + + L Y+
Sbjct 377 SIT-----TFGLLKARQDWMKGPGRFANQGLKMMLMAIFTILQSLAHAIKLLNYHG---- 427
Query 555 SEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR-----DPSNENP 609
++ D L F S G + E+ QE+ ++ D +P
Sbjct 428 -----IRPFYDNLVAFRSETEDKGQKGSKYKRQLIGEQSFQEMMDLASKWLKIDGFAGHP 482
Query 610 KLEDLCFILQEEYHLNPE---TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
KL LC L + E T I+F + R + + + + + + G+
Sbjct 483 KLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHK--PMISASLFVGQAD 540
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ ++ GM Q + F+ G N+L+ATS+ +EG+DI Q +L+I Y+ + I+M+Q
Sbjct 541 SKKSEGMKQKQQIETIAKFR-DGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQ 599
Query 727 TRGR-GRARGSKCFLLTSNAGV-----IEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
GR GR R K LL ++ ++ + S + + +
Sbjct 600 RMGRTGRKRAGKITLLLMKGKEEDNYAKAQDNYEKMQKLICEGSRFNFRHDLSSRIVPRD 659
Query 781 LHIQTHEKFIR--DSQEKPKPVPDKENKKLLCRKCK 814
+ + ++ + + +P+ + + +K
Sbjct 660 VKPEVDKRMVEIPIENTQDTSLPEPKARSTRGKKAS 695
>sp|A0A1D5PRR9|FANCM_CHICK Fanconi anemia group M protein OS=Gallus
gallus OX=9031 GN=FANCM PE=1 SV=1
Length=2041
Score = 395 bits (1014), Expect = 4e-116, Method: Composition-based stats.
Identities = 129/637 (20%), Positives = 248/637 (39%), Gaps = 94/637 (15%)
Query 218 ECQNLSENSCPPSEVSDTN---------LYSPFKP-RNYQLELALPAMKGKNTIICAPTG 267
N+ N P E + +Y +P R YQL +A A+ NT++C PTG
Sbjct 49 PNPNVDPNPGPGPEAAAGGFCAAAGALWIYPTNRPERPYQLRMARAALFA-NTLLCLPTG 107
Query 268 CGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
GKTFV+ ++ + + FP GKV+F A + QQ ++ G + ++G
Sbjct 108 LGKTFVAAVVMYNFYRWFP---SGKVLFLAPTKALVAQQMEACAQLMGIPGRDMAEMTGG 164
Query 328 TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 387
T + + ++ + + LTPQI+VN+L +GT P++ + L++ DE H H Y ++
Sbjct 165 T-QALSRRELWASRRVFFLTPQIMVNDLSRGTCPAVEVKCLVV-DEAHKALGNHAYCQVV 222
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+V+ LTA+ G + ++ ++L + I +
Sbjct 223 KE------LSRYTTQFRVLALTATPG--------SDTKAVQQVVSNLLIAQIELCSEDSP 268
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK----------DLENLS 497
E++ + ++ K+ + ++ I + E+ A R+ K L
Sbjct 269 EIQPYSH--ERQVEKIVVPLGEELGGIQRAYIHVLETFAGRLIKLGVLARRDVPSLTKYQ 326
Query 498 QIQNREFGTQKYEQWIVTVQKA--------CMVFQMPDKDEESRICKALFLYTSHLRKYN 549
I R+ + V +Q C+ + + ++LF+Y + +
Sbjct 327 IILARDQYRKNPSPQNVGMQPGIIEGDFALCISLYHGYELLQQMGVRSLFIYLCGIMDGS 386
Query 550 DALIISEHARMKDALDYLKDFFS--NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
L R K+ L +DF F + Q K + + ++
Sbjct 387 KGLT-----RTKNELGRNEDFMRLYQQLTDMFSDTCQTSANGNLHKSRTVSENKKEFIYS 441
Query 608 NPKLEDLCFILQEEYHLNP--------------ETITILFVKTRALVDALKNWIEGNPKL 653
+PKL+ L I+ E + +T ++F R V + +
Sbjct 442 HPKLKKLEEIVIEHFKSRKMGCSDQTTSGGTCVDTRVMIFSSFRDSVQEIAEMLSRFS-- 499
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
++ G G T Q ++ F+ G +N L++T V +EG+DI + +L+I
Sbjct 500 PVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGG-YNTLVSTCVGEEGLDIGEVDLII 558
Query 714 LYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
++ + I+++Q GR GR R + ++ + +E+ N S ++
Sbjct 559 CFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEG----------REERTYNQSQSNRRSIQ 608
Query 773 EAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
+A+ K+LH Q P+ +P+ N +L
Sbjct 609 KAISGNKMLHF---------YQHSPRMIPEGINPELH 636
>sp|A7EFH4|MPH1_SCLS1 ATP-dependent DNA helicase mph1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=mph1 PE=3 SV=1
Length=1235
Score = 387 bits (993), Expect = 4e-116, Method: Composition-based stats.
Identities = 115/698 (16%), Positives = 250/698 (36%), Gaps = 81/698 (12%)
Query 175 LEKERN-KFSELWIVEKGIKDVETE------DLEDKMETSDIQIFYQE---DPECQNLSE 224
LE ++ + L + G++ + + + + + +P + +
Sbjct 190 LESTQSVRSQRLAAPQNGLRQTTLFGGRAPNQVPSSTQAKKVHKYLVDKVPEPPTHHTLD 249
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
+ + NL + R YQ + + N ++ PTG GKTF++ I L
Sbjct 250 EEAIKTWIYPNNLGAE---RRYQYTIVHKGLFN-NLLVALPTGLGKTFIAATIM---LNF 302
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
F ++VF A P+ QQ + T ++G + + E+ +
Sbjct 303 FRWTTDSQIVFMAPTKPLVSQQVKACFEIAGIPRSSTTMLTGDQSPALRAEE-WAEKRVF 361
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+TPQ + N+LK G I L++ DE H + + Y ++ + +
Sbjct 362 FMTPQTVENDLKTG-IADPKKIALIVVDEAHRATGNYAYTKVV------QFLRRFNESFR 414
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
V+ LTA+ G +++ + ++ +L+ + + + ++++ V++ ++
Sbjct 415 VLALTATPG--------SSVEAVQEVIDNLEIAEVEIRTEDSIDIKEYVHRRDITEILID 466
Query 465 S-----RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA 519
I + F + L+ S KD L+Q + W+ +
Sbjct 467 PSDEIIMIRELFSKALQPLVNLLCSQKAYYNKDPMGLTQYGMLT----ARKAWMASGAGK 522
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+ + L ++ +KDF + V
Sbjct 523 SAQMSIKGMMNALFTVLTSMGHAIKLLNFHGIGPFF---------SNIKDFRAEVEGNKK 573
Query 580 DEIEQDL---TQRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHL----------- 624
++ + F++ ++ ++ +PKL LC + +
Sbjct 574 GGKYKNQIVNSPEFKKMMERIQGWINKEDFIGHPKLTYLCDTVLNHFLDAGAGLMGDNMP 633
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
T I+F + R + + + + ++ + G+ + ++ GM Q +
Sbjct 634 PSSTRVIVFTEYRDSAEDIARVLNKHG--PMIRASVFVGQSDSKRSEGMNQEKQLETIRK 691
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
FKA G N+++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R K LL
Sbjct 692 FKAGG-INVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKRAGKIVLLLM 750
Query 744 NAGVIE-----KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK-- 796
+ K+ + + + S + A + + + ++FI E
Sbjct 751 RGKEEDSYKKSKDNYEQIQRMISSGSRFTFRHDLSARIIPRKVKPEVDKRFIEIPLENTQ 810
Query 797 ----PKPVPDKENKKLLCRKCKALACYTADVRVIEECH 830
P+P + +K L +K R + +
Sbjct 811 DPSLPEPKRRAKPRKKLAKKFHMPDGVETGFRKASKLN 848
>sp|A6RIS1|MPH1_BOTFB ATP-dependent DNA helicase MPH1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=mph1 PE=3 SV=2
Length=1229
Score = 386 bits (991), Expect = 8e-116, Method: Composition-based stats.
Identities = 103/577 (18%), Positives = 212/577 (37%), Gaps = 60/577 (10%)
Query 216 DPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL 275
+P + + + V NL R YQ + + N ++ PTG GKTF++
Sbjct 247 EPPTHHSLDREAIKTWVYPNNLGPE---RRYQYTIVHKGLFN-NLLVALPTGLGKTFIAA 302
Query 276 LICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
I L F + ++VF A P+ QQ + T ++G + E
Sbjct 303 TIM---LNFFRWTKNSQIVFMAPTKPLVSQQVKACFEIAGIPRSSTTMLTGDQTPALRAE 359
Query 336 QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL 395
+ + + +TPQ + N+LK G I L++ DE H + ++ Y ++ +
Sbjct 360 E-WDEKRVFFMTPQTVENDLKTG-IADPKRIALLVVDEAHRATGKYAYTKVV------EF 411
Query 396 GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 455
+V+ LTA+ G ++ + ++ +L+ + + ++++ V++
Sbjct 412 LRRFNKSFRVLALTATPG--------STVEAVQEVIDNLEIAEVEIRTEESIDIKEYVHR 463
Query 456 PQKFFRKVES-----RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
++ + D F + L+ S KD +L+Q +
Sbjct 464 RDITEILIDPSDEIIMVRDLFSKALQPLVNLLCSQKAYYNKDPMSLTQFGMLT----ARK 519
Query 511 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 570
W+ + + + + ++ +KDF
Sbjct 520 TWMASGAGKSANMGVKGMMNALFTVLTSMGHAIKILNFHGIGPFF---------SNIKDF 570
Query 571 FSNVRAAGFDEIEQDLT---QRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHL-- 624
+ V ++ F++ + ++S +PKL LC + +
Sbjct 571 RAEVEGNKKGGKYKNQVVNDPDFKKMMDRIQSWINKEEFIGHPKLTHLCDTVLNHFLDAG 630
Query 625 ---------NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
T I+F + R + + + + +K + G+ + ++ GM
Sbjct 631 AGLTGDNMPPSSTRVIVFTEYRDSAEDIARVLNKHG--PMIKASVFVGQSDSKRSEGMNQ 688
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
Q + FKA G N+++ATS+ +EG+DI + +L++ Y+ + I+M+Q GR GR R
Sbjct 689 EKQLETIRKFKAGG-INVIVATSIGEEGLDIGEVDLIVCYDSSSSPIRMLQRMGRTGRKR 747
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
K LL + + + + M I +
Sbjct 748 AGKIVLLLMRGKEEDSYKKSKDNYEQMQRMISSGSRF 784
>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=DCL2
PE=3 SV=2
Length=1399
Score = 387 bits (995), Expect = 2e-115, Method: Composition-based stats.
Identities = 120/587 (20%), Positives = 235/587 (40%), Gaps = 71/587 (12%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
+PF+ R+YQ E+ +M+ N I TG GKT +++ L+ + V F A
Sbjct 7 APFRLRSYQAEMVEESMQS-NIICVMDTGSGKTHIAIDRTRAELEICRPDKI--VWFLAP 63
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDIIILTPQILVN 353
+ + EQQ +VF +G ++ +SG + + ++ N I++ T Q+L++
Sbjct 64 TVTLCEQQFAVFKSNLPGYGIQL--LSGKDNLDHWTDQGVWDDVLLNIRIVLSTHQVLLD 121
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
L G + + +L+IFDE H+ S +HP + IM ++ ++G LP+++GL+AS
Sbjct 122 ALSHGFV-KMRNLSLLIFDEAHHCSLKHPAHRIMSDFYKPRIG---TELPRILGLSASPI 177
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
+++ LCA+ + T K + EL + V++P D
Sbjct 178 KTAKVTSEDLQQIERNLCAT-----VKTPKLHRSELLRYVHRPHLMRIDYPVEPQDLQSN 232
Query 474 IIA--------------QLMRDTESLAKRICKDLENLSQ--IQNREFGTQKYEQWIVTVQ 517
+++ + + ++ +N+ + I + + + + +
Sbjct 233 MLSFLKSAYTNYDLQKDPWVSELLQQRQQGHDVTKNIHKVFIGGKTYCRDQLRSLALKAE 292
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA 577
M D R C F H+ +D+ ++ A K L + ++
Sbjct 293 AMSQELGMSVMDWYLRGCITQFSKMVHM---SDSQLLDWSADEKRHLLEILRTLPSIDLN 349
Query 578 GFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTR 637
D L + + KL+ L L E +PE ++FV+ R
Sbjct 350 SHDIPPMSL------------------GSMSHKLQLLIKFLVAEAKHDPEFTCLVFVEQR 391
Query 638 ALVDALKNWIEGNPKLS-FLKPGILTGRGKTNQNTG-----MTLPAQKCILDAFKASGDH 691
V + + +P+ L+ G G + ++ Q+ L+ F+A G
Sbjct 392 VWVACIAEVLAIHPETRDLLRVGTFVGESENSKRKANIASISEPRNQQATLENFRA-GKL 450
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE-- 749
N+++ATSV +EGID++ C+LV+ +E N+ +Q RGR R SK + AG
Sbjct 451 NLILATSVLEEGIDVSSCHLVVCFESPKNLKSFVQRRGRARKEESKYVIFVPQAGRRRDP 510
Query 750 ------KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI 790
+E + + L + ++ + +++ +
Sbjct 511 ESWQSLEEGMKAAYLDDLRQVKLATEKEQQSETGHRNFEVKSTGALL 557
>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
OX=227321 GN=dcl2 PE=3 SV=1
Length=1429
Score = 386 bits (991), Expect = 1e-114, Method: Composition-based stats.
Identities = 137/554 (25%), Positives = 231/554 (42%), Gaps = 70/554 (13%)
Query 234 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
+ + R+YQLE+ ++KG N I+ TG GKT ++LL H L+ +
Sbjct 5 PEERSAEHRARSYQLEMFEASLKG-NIIVVMGTGSGKTQIALLRIIHELE---NSDGKLI 60
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA---TAENVPVEQIVENNDIIILTPQI 350
F A +P+ QQ V S++ R S E + ++E +I+ TP +
Sbjct 61 WFLAPTVPLCLQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAV 120
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG-SSGPLPQVIGLT 409
L + + G + +S L+IFDE H+ ++HP NMIM N+ L G +P+++GLT
Sbjct 121 LHDAMTHGFV-RISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLT 179
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
AS G + + + + +L+ SV T + + +EL + + P+
Sbjct 180 ASAG--------SSREGLQTIEMNLN-SVCTTPQAHRQELLEYTHMPELR---------- 220
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
+ + LM++ SL + L ++ R+ T Q V KA +FQ
Sbjct 221 --RVLYTPLMKENASLWEG-----STLQKLLERD-NTYCSGQMKTFVCKAVHIFQ----- 267
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
E I A + +R + L+ + K LDY DE E +
Sbjct 268 -ELGIWAAEYF----IRASVEELLSHAYVHSKIDLDY-------------DEREYLVNIL 309
Query 590 FEEKLQELESVSRDPSN--ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
+ + +++ S DP + +PK E L L +N ++FV+ RA V + +
Sbjct 310 SKSPVPDIDVHSTDPKDFPVSPKFEALISFLMSTEDIN--FSGLIFVEQRAAVTVMSYLL 367
Query 648 EGNPKLS-FLKPGILTGRGKTNQNTGM-----TLPAQKCILDAFKASGDHNILIATSVAD 701
+P + G G + M + Q LD F+ G N+++AT V
Sbjct 368 STHPSTRDRFRTGSFIGMSNSTNRKTMLGDLLSAKMQPDTLDDFRY-GRKNLIVATDVLK 426
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
EGID++ C++VI Y IQ RGR R + S ++ S EK+M
Sbjct 427 EGIDVSACSVVICYNIPKGFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKIM 486
Query 762 NDSILRLQTWDEAV 775
++ L + E +
Sbjct 487 EEACLEDRRRTEEL 500
>sp|A4RHU9|DCL2_PYRO7 Dicer-like protein 2 OS=Pyricularia oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL2
PE=3 SV=3
Length=1485
Score = 387 bits (993), Expect = 1e-114, Method: Composition-based stats.
Identities = 141/603 (23%), Positives = 242/603 (40%), Gaps = 61/603 (10%)
Query 223 SENSCPPSEVSDTNLYSPFKPRN-----YQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
S +S +S+ S PR+ YQLE+ +M+ +N I+ TG GKT V++L
Sbjct 40 STHSTTDDAISEEPQPSGNGPRSIIARAYQLEMFQASMQ-QNIIVSMDTGSGKTQVAVLR 98
Query 278 CEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP---- 333
L++ P + +V F A + + QQ V + V ++G +
Sbjct 99 IRAELERTPPEK--RVWFLAPTVALCAQQYEVIRSQIKVANSIV--MTGDDNVDSWSDVQ 154
Query 334 -VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 392
+ ++ N +++ T IL L + + +L++ DE HN + + P +IM +
Sbjct 155 TWDAVLANVRVVVCTYMILFEALSHAFVT-MDSISLLVMDEAHNCTGKFPGRLIMKRFYM 213
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQV 452
+ + +P ++GLTAS + L + L +SLD SV EEL
Sbjct 214 PR-KSAGDHVPHILGLTASPVMK------SDLSSMEDLESSLD-SVCRGPTLQREELFAN 265
Query 453 VYKPQKF---FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 509
V++P +++ + R ++ + L E+L I +D L + R + +
Sbjct 266 VHQPTMTVTTYKECDLRSPVQYTRNMNNLHLAFENL--DIAEDPYVLHLMGQRTPKSLRE 323
Query 510 EQWIVTVQKACMVFQMPD-KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
I+T QM + + S + + L + YN +S LD
Sbjct 324 LDRILTKLDTYTQNQMKALQRKSSSLFRELGQWAVDSYIYNVVEKVSN-------LDARS 376
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS--RDPSNENPKLEDLCFILQEEYHLNP 626
+ G+ + EQ R + + L + P + KL+ L IL+
Sbjct 377 SWL-----GGWLDDEQRYLHRAIQGINALPVSAAIPAPEMTSIKLQVLLRILRGYEGSP- 430
Query 627 ETITILFVKTRALVDALKNWIEGNPKLS-FLKPGILTGRGK-----TNQNTGMTLPAQKC 680
+ I+FVK RA L + P ++ K G + G + N + +
Sbjct 431 --VGIVFVKERATAGILSQLLAIIPDINARYKVGCMVGTSRYMSRKMNIHEVLQQGDDLL 488
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
L+ F+ SG N+L+ATSV +EGID+ CNLVI ++ N+ IQ RGR R R SK L
Sbjct 489 ALEKFR-SGAINLLVATSVLEEGIDVPVCNLVICFDMPANLKSFIQRRGRARMRESKLHL 547
Query 741 LTSNAGVIE-------KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
+ ++ + + E M + Q +E LH +T +
Sbjct 548 MIEEDSLVSVKDWGALEAAMKQRYENDMRELDHLAQVEEEDEMDVPPLHSRTTAAKVTVD 607
Query 794 QEK 796
K
Sbjct 608 DAK 610
>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica
OX=5116 GN=DCL-1 PE=3 SV=1
Length=1548
Score = 386 bits (992), Expect = 3e-114, Method: Composition-based stats.
Identities = 126/592 (21%), Positives = 237/592 (40%), Gaps = 64/592 (11%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKV-VFFA 297
PR+YQ+EL A K +NTI TG GKT ++ L+ +H L+ +G ++ F
Sbjct 99 PRDYQMELFERA-KQQNTIAVLDTGSGKTLIAALLLDHTVNQELEDRAKGLPRRIAFFLV 157
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
++ + QQ +V +G S T E + ++++I+ T +IL L+
Sbjct 158 EKVALAFQQHAVLECNLAHSVAVFSGESIKNTWTKGFWETQLADHEVIVCTAEILNQCLQ 217
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
I + L++FDE H+T K HPY I+ +Y LP++ G+TAS
Sbjct 218 YAYI-RIDQINLLVFDEAHHTKKNHPYARIIKDYYASGKDRG-LRLPRIFGMTASPVDAL 275
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
A++ L L + + T + + L + V +P+K + + + ++
Sbjct 276 IDVRQAAIE----LEGLLHSRIATT--ADPDALRRAVGRPKKEIIYKYNPLVKPIQTMLT 329
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+R + K+ K S+ RE GT ++ + + ++ K E S
Sbjct 330 FKLRPLIANNKQFSK-AFAFSEAAARELGTWFVDRMWQLFLEDEELLKLEAKTERS---- 384
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
L K A + E R + + E ++
Sbjct 385 --------LSKDMAAPEVVEKHR-------------------------NAVRSARELIRS 411
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSF 655
E +P + KL+ L +L+E + + I+FV+ R L ++ E + ++
Sbjct 412 HEFPKPEPGLLSSKLKTLSKLLEEYFTDS-SIRCIVFVERRWTAKLLTDFFESHAAEIPG 470
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
LK G L G ++ + Q + +FK G+ N + ATSVA+EG+DI CNL+I +
Sbjct 471 LKVGSLMGANAEGGSSQTSFREQIRTILSFK-KGNTNCIFATSVAEEGLDIPDCNLIIRF 529
Query 716 EYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ +I+ IQ+RGR R S L + ++ ++ L+ +
Sbjct 530 DICKTMIQYIQSRGRARQADSTYIHLIEGGNGDHRRIMHQ-----NAENEKLLRRFCNTQ 584
Query 776 FREKILHIQTHEK---FIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR 824
+++L ++ ++ ++ + + L + +R
Sbjct 585 PEDRLLKGSDYDMDFFLRQERNQRQYTIKSTGARLTYKNSLPILQAFLNTLR 636
>sp|Q7S8J7|DCL1_NEUCR Dicer-like protein 1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) OX=367110 GN=dcl-1 PE=2 SV=1
Length=1584
Score = 385 bits (989), Expect = 1e-113, Method: Composition-based stats.
Identities = 136/631 (22%), Positives = 248/631 (39%), Gaps = 78/631 (12%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL----ICEHHLKKFPQGQKGKVVFF-A 297
PR YQ+EL A K +NTI TG GKT ++ + + L+ +G ++ FF
Sbjct 122 PREYQVELFERA-KQQNTIAVLDTGSGKTLIAAMLLRWVITGELEDREKGLPRRIAFFLV 180
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-VEQIVENNDIIILTPQILVNNLK 356
+++ + QQ S +K + ++ G E+ ++ +E N++++ T +IL L
Sbjct 181 DKVALVFQQHSFLTKNLDFPMEKLCGEMVEGVESKAFWKEALEQNEVVVCTAEILSTALH 240
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
I + L+IFDE H+T K HPY I+ N+ + P+++GLTAS
Sbjct 241 HSWI-RMDQINLLIFDEAHHTKKDHPYARIIKNFY---IDEQLERRPRILGLTASPVDAK 296
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
A + L A L + + + L+ + KP+ R + ++
Sbjct 297 VDPRRAAAE----LEALLHSQIAT--AADPAALQHTICKPKTELVVEYVRGRPDSETVLN 350
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ +R + + K N + + GT +++ K + ++ + E +
Sbjct 351 KQLRKLVGG-QELFKKPLNFTTSAASKLGTWCADRYWQLFFKQEDIVKLESRTERDLMKV 409
Query 537 ALF--LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
A + H+++ +A + A
Sbjct 410 AALDEITEKHVKQVREAHELVNAHTFSPA------------------------------- 438
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLN-PETITILFVKTRALVDALKNWIEG---N 650
+ DP+ + K+ L IL++++ I+FV+ R L + ++
Sbjct 439 ------ALDPTMLSSKVIMLVRILRDQFERGVGAQRCIIFVRQRNTAMLLADLLQQPEIK 492
Query 651 PKLSFLKPGILTGRGKTNQ---NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+ + +L G G T N + Q I+ FK G+ N L ATSVA+EG+DI
Sbjct 493 SHIPSIAAEVLVGGGTTGSSYVNAKINFQQQNRIIRKFKL-GEINCLFATSVAEEGLDIP 551
Query 708 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
CN+VI ++ +I+ IQ+RGR R S+ + +I K +
Sbjct 552 DCNIVIRFDLYDTLIQCIQSRGRARRPDSRYIQMIEKGNYEHHSRILRAK-----GAEDV 606
Query 768 LQTWDEAVFREKIL---HIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADV- 823
L+ + EA+ ++ L H+ ++ ++ VPD K + LA +TA +
Sbjct 607 LRKFCEALPEDRKLTGNHMNLDYLLRKEKGKRQYTVPDTGAKLSYMQSLVCLANFTATLP 666
Query 824 RVIEEC----HYTVLGDAFKECFVSRPHPKP 850
E +Y +C V P P
Sbjct 667 HPPETSLSPEYYITTVPGGFQCEVVMPDASP 697
>sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo
sapiens OX=9606 GN=FANCM PE=1 SV=2
Length=2048
Score = 387 bits (994), Expect = 2e-113, Method: Composition-based stats.
Identities = 124/624 (20%), Positives = 251/624 (40%), Gaps = 78/624 (13%)
Query 216 DPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
+ E Q EN + +Y P R+YQL ++ A+ NT++C PTG GKTF++
Sbjct 63 EAERQLCLENGGFCTSAGALWIYPTNCPVRDYQLHISRAALFC-NTLVCLPTGLGKTFIA 121
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
++ + + FP GKVVF A P+ QQ + + ++G+T +
Sbjct 122 AVVMYNFYRWFP---SGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTR- 177
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 394
++I + ++ LTPQ++VN+L +G P+ I L+I DE H + Y ++
Sbjct 178 KEIWCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVI-DEAHKALGNYAYCQVVRE----- 231
Query 395 LGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 454
+++ L+A+ G + + ++ +L I + ++ +
Sbjct 232 -LVKYTNHFRILALSATPG--------SDIKAVQQVITNLLIGQIELRSEDSPDILTYSH 282
Query 455 KPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC-------KDLENLSQIQ---NREF 504
++ K+ + ++ I ++ ES A+ + +D+ NL++ Q R+
Sbjct 283 --ERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQ 340
Query 505 GTQKYEQWIVTVQKA--------CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
+ IV +Q+ C+ + + ++L+ + + +
Sbjct 341 FRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMT--- 397
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
R K+ L +DF T + ++ +PKL+ L
Sbjct 398 --RSKNELGRNEDFMKLYNHLECMFARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEE 455
Query 617 ILQEEYHL----------NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
++ E + ET ++F R V + + + ++ G
Sbjct 456 VVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQ--PIIRVMTFVGHAS 513
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G T Q ++ F+ G +N L++T V +EG+DI + +L+I ++ + I+++Q
Sbjct 514 GKSTKGFTQKEQLEVVKQFR-DGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQ 572
Query 727 TRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR GR R + ++ S +E++ N S Q+ ++++ I +
Sbjct 573 RMGRTGRKRQGRIVIILSEG----------REERIYNQS----QSNKRSIYKA----ISS 614
Query 786 HEKFIRDSQEKPKPVPDKENKKLL 809
+ + + Q P+ VPD N KL
Sbjct 615 NRQVLHFYQRSPRMVPDGINPKLH 638
>sp|Q1DW80|DCL2_COCIM Dicer-like protein 2 OS=Coccidioides immitis
(strain RS) OX=246410 GN=DCL2 PE=3 SV=3
Length=1435
Score = 378 bits (971), Expect = 9e-112, Method: Composition-based stats.
Identities = 124/562 (22%), Positives = 235/562 (42%), Gaps = 47/562 (8%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
++ + S + S L P + R YQLE+ +++ +N I+ TG GKT ++
Sbjct 19 DNDSKMHFSSILEDGTSKSQEALLPPRRARGYQLEMLSESLR-QNIIVAMDTGSGKTEIA 77
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA-----TA 329
+L + L++ P + V F A + + EQQ S SK R+ ++GA +
Sbjct 78 ILRIQRELERCPAHKF--VWFMAPTVALVEQQHSAISKQLPAFQTRL--LTGAANVSHWS 133
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 389
+ I+ N I+I TPQ+L++ L G + L +L++FDE H+ + P N IM +
Sbjct 134 TKKIWDDILLNIRIVISTPQVLLDALSNGFVD-LHTISLLVFDEAHHCVRDAPANRIMRD 192
Query 390 YLD-QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEE 448
+ + + LP ++GLTAS + E L+ +V T K + EE
Sbjct 193 FYHYHRQEEGTDGLPHILGLTASPTTRARQTDLEVLEINLN-------AVCVTPKMHREE 245
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
+ Q V+ P+ + + + + F I+ +L L I D + + +++
Sbjct 246 MMQFVHMPEYRSIEYQPDVQN-FSSIVEKLSVIINEL--DIENDPFVKFMRRRNDLKSRQ 302
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
+ A + P D+ R + + L + ++ LK
Sbjct 303 R------LLDALENKKTPCLDQLKRCLRRSRVIHRELGPWASERFLTRCIMG------LK 350
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR-----DPSNENPKLEDLCFILQEEYH 623
+N + + +++ L ++ S + P + K+ L L
Sbjct 351 SKQTNASGPQWADWDREDNSYMLNVLSQVVSSTEMGVQNPPDELSRKVHKLIDFLV--LE 408
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG-----KTNQNTGMTLPAQ 678
+I I+F + R +V L + +P+ +K G K++ Q
Sbjct 409 HVNGSIGIVFAEERTIVIMLAQLLSLHPRTKHIKTTAFLGSSASVSRKSDITELHNPIDQ 468
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC 738
+D + +G +++IAT+V +EGID+ C+LVI ++ ++ IQ RGR R +GSK
Sbjct 469 STAIDDLR-TGKKDLIIATAVLEEGIDVPICDLVICFDLPKDLRSFIQRRGRARKKGSKF 527
Query 739 FLLTSNAGVIEKEQINMYKEKM 760
L + ++++ ++ M
Sbjct 528 ALFLHSEDRATSSELHLMEKTM 549
>sp|A4RKC3|DCL1_PYRO7 Dicer-like protein 1 OS=Pyricularia oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=DCL1
PE=3 SV=2
Length=1591
Score = 379 bits (973), Expect = 2e-111, Method: Composition-based stats.
Identities = 139/598 (23%), Positives = 247/598 (41%), Gaps = 72/598 (12%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH----HLKKFPQGQKGKV-VFFA 297
PR YQ+EL A K KNTI TG GKT +++L+ H L QG++ ++ F
Sbjct 108 PREYQIELFERA-KQKNTIAVLDTGTGKTLIAILLIRHIIELELGARWQGREKRITFFLV 166
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP-----VEQIVENNDIIILTPQILV 352
+++ + QQ + + VTG+ G T N+ E++++ ++++ T +IL
Sbjct 167 DKVALVRQQTDHIRANLD---FPVTGLHGDTVRNLWYSKEYFEKLLQEQEVVVCTAEILY 223
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
L + + +S +L++FDE H+ K H Y I+ ++ + P++ G+TAS
Sbjct 224 RCLHRSYLN-ISQVSLVVFDEAHHAKKNHVYARIIKDFY--LMEEDCQKRPRIFGMTASP 280
Query 413 GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 472
D K+T + + SL S IAT+ + + L+ + +PQ+ + + +
Sbjct 281 I--DTKDTCISYERATHELESLLHSEIATIS-DRDLLKVIGSRPQEVRKSYARVLRQENT 337
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
+ QL + N Q ++ + + A D+
Sbjct 338 ELCNQLRE-----------------LVGNHPLFKQTFD----SAEFAVTELGAWCADKLW 376
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+C + D + AR D + SN R A L Q++
Sbjct 377 ELC-----FREEAVSTLDGRVEGSRARDPDEVGESSHEVSNAREA------LSLVQQWSF 425
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---ITILFVKTRALV---DALKNW 646
E S+S K L IL E + I+FVK R +AL
Sbjct 426 SPPEDGSLST-------KTHKLIEILAECFSQASAGNAIQCIVFVKRRDTAVLLNALCEQ 478
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
E K+ LK L G G+ T Q+ + F+ G+ N L ATS+A+EG+DI
Sbjct 479 AEIRTKIPDLKGAFLIGAGRGGNAAFTTTRQQEQTVSRFR-DGEINCLFATSIAEEGLDI 537
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSIL 766
CN+VI ++ G I+ IQ+RGR R R S +T + +++++
Sbjct 538 PGCNVVIRFDLHGTTIQYIQSRGRARMRNSWFIHMTEFGNPEHNRR--WFQDRVNEQ--- 592
Query 767 RLQTWDEAVFREKILHIQTHEKFIRDSQEKP-KPVPDKENKKLLCRKCKALACYTADV 823
+++ + ++ +++I+ + +R Q + VP + + LA + A +
Sbjct 593 KMRDFCLSLPKDRIMEKAEVDDVLRGDQSQKIFVVPGSKASLTFKQSLVVLAEFVATL 650
>sp|Q9UT23|MPH1_SCHPO ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1
PE=1 SV=2
Length=834
Score = 365 bits (936), Expect = 2e-111, Method: Composition-based stats.
Identities = 127/610 (21%), Positives = 251/610 (41%), Gaps = 53/610 (9%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
Q+ + S V N+ R+YQ + A+ +N ++ PTG GKTF++ ++
Sbjct 54 QHELDESAAQQWVYPINVSF----RDYQFNIVQKAL-FENVLVALPTGLGKTFIAAVVMM 108
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++L+ FP K +VF A P+ QQ K + +SG Q +
Sbjct 109 NYLRWFP---KSYIVFMAPTKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTR-NQYYQ 164
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSS 399
+ ++ +TPQ ++N++K G I L+I DE H ++ + Y ++ L S
Sbjct 165 SRNVFFVTPQTILNDIKHGICDRTRISCLVI-DEAHRSTGNYAYVEVV------HLLSLS 217
Query 400 GPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 459
+++ L+A+ G L+ I + SL S I N ++ Q V K +
Sbjct 218 NKNFRILALSATPG--------NKLEAIQNVIDSLHISRIEIRTENSIDISQYVQKKEVD 269
Query 460 FRKVE-----SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIV 514
F V+ + I D+F I+ +++ ++ ++++ F + +Q +
Sbjct 270 FFPVDLSAEITDIRDRFSSILEPMLQKLNKGNYYRIQNAKDIT-----SFTVVQAKQAFL 324
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNV 574
+ + A F Y +L + + R + ++
Sbjct 325 AMSGQNFPANQKWDILNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEECFVGRSGYKK 384
Query 575 RAAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYH--LNPETITI 631
R + + + ++E + RD S +PKLE L I+ E + +T +
Sbjct 385 RIINHE--------NYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFEKEQTKDTRIM 436
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
+FV+ R+ + + ++ ++P I G+ + GM+ Q + F+ G+
Sbjct 437 IFVEIRSSAEEILRFL--GKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQ-KGEV 493
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEK 750
N LIATS+ +EG+DI + +++I Y+ + I+M+Q GR GR R ++L + K
Sbjct 494 NTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKEEAK 553
Query 751 EQINMYKEKMMNDSIL--RLQTWDEAVFR--EKILHIQTHEKFIRDSQEKPKPVPDKENK 806
+ + + D+I+ R + E +R + ++ I +E + V +
Sbjct 554 WERAKDAYRTLQDNIVSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVAPKKV 613
Query 807 KLLCRKCKAL 816
+L + K
Sbjct 614 QLRTKIKKKF 623
>sp|Q8BGE5|FANCM_MOUSE Fanconi anemia group M protein homolog
OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
Length=2021
Score = 380 bits (976), Expect = 4e-111, Method: Composition-based stats.
Identities = 118/624 (19%), Positives = 253/624 (41%), Gaps = 85/624 (14%)
Query 237 LYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
+Y P R+YQL+++ A+ NT++C PTG GKTF++ ++ + + FP GKVVF
Sbjct 72 IYPTNCPVRDYQLDISRSALFC-NTLVCLPTGLGKTFIAAVVMYNFYRWFP---SGKVVF 127
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A P+ QQ + ++G+T + V ++I + ++ LTPQ++VN+L
Sbjct 128 MAPTKPLVTQQMEACFHVMGIPQSHMAEMTGST-QAVNRKEIWSSRRVLFLTPQVMVNDL 186
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
+G +P+ + L++ DE H + Y ++ +++ L+A+ G
Sbjct 187 TRGAVPATHVKCLVV-DEAHKALGNYAYCQVVRE------LVKYTTHFRILALSATPG-- 237
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ + ++ +L I ++ + ++ K+ + ++ I
Sbjct 238 ------SDIKAVQQVITNLLIGKIELRSEESPDILPYSH--ERRVEKLVVPLGEELGAIQ 289
Query 476 AQLMRDTESLAKRIC-------KDLENLSQIQ---NREFGTQKYEQWIVTVQKA------ 519
++ E+ A + +D+ NL++ Q R+ + IV +Q+
Sbjct 290 KTYIQILETFASSLIHRNVLMKRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEF 349
Query 520 --CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA 577
C+ + + ++L+ + S + + R ++ L +DF
Sbjct 350 ALCISLYHGYELLQQMGMRSLYFFLSGIMDGTKGMT-----RARNELSRNEDFM-----K 399
Query 578 GFDEIEQDLTQRFEEKLQELESVSRDPSNE--NPKLEDLCFILQEEYHLNP--------- 626
+ ++ + +++ +PKL+ L ++ E +
Sbjct 400 LYTHLQSAFAPASTSDASAFQRGNKEKKFVYSHPKLKKLEEVILEHFKSWNAKATTEKKC 459
Query 627 -ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
E+ ++F R V+ + + + ++ G G T Q ++ F
Sbjct 460 HESRVMIFSSFRDSVEEIAEMLLQHR--PVIRVMTFVGHASGKNTKGFTQKEQLQVVRQF 517
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSN 744
+ G +N L++T V +EG+DI + +L+I ++ + I++IQ GR GR R + ++ +
Sbjct 518 R-DGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAE 576
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
+E+ N S Q+ + +++ I + + +R Q P+ VPDK
Sbjct 577 G----------REERTYNQS----QSNKKNIYKA----ISGNRQVLRLYQGSPRMVPDKI 618
Query 805 NKKLLCRKCKALACYTADVRVIEE 828
N +L R ++
Sbjct 619 NPELHKMYITHGVYEPEKARSVQR 642
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL3B PE=3 SV=2
Length=1637
Score = 376 bits (964), Expect = 4e-110, Method: Composition-based stats.
Identities = 127/522 (24%), Positives = 218/522 (42%), Gaps = 35/522 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--VVFFANQ 299
PR QL A NTI TG GKT V++++ H ++ G+ + VVF A
Sbjct 37 TPRTSQLVEVFEAALRGNTIAVLDTGSGKTMVAVMLAREHARRVRAGEAPRRIVVFLAPT 96
Query 300 IPVYEQQKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ + QQ V +Y + +G S G + ++ V N+I+++TPQIL++ L+
Sbjct 97 VHLVHQQFEVIREYTDLDVMMCSGASRVGEWGAD-HWKEEVGRNEIVVMTPQILLDALRH 155
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG-VGD 416
+ +S +L+IFDECH HPY IM + S P V G+TAS
Sbjct 156 AFLT-MSAVSLLIFDECHRACGSHPYARIMKEFYF-----GSQWRPDVFGMTASPVATKG 209
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
A +I +L +LDA + + + ELE P K F + +
Sbjct 210 ASTLHNCEAHISQLELTLDAKIY--IVEDRNELESFSP-PTTIVNKYYDAYMVDFDNLKS 266
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE--ESRI 534
+L ++ + E+ S + + ++ +++ + D S +
Sbjct 267 KLQIFSDEFDSLLVGLQESPSNKFKDTDNILETSRKSLSRYHGKILYSLNDLGPIITSEV 326
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
K L D I A + + Y K+ S IE+ L Q + E +
Sbjct 327 VKIHIESVKPLCDSEDC--IFSKASLCLHMSYFKEALS--------LIEEILPQGYGELM 376
Query 595 QELESVSRDPSNE---NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 651
+ ES S + + + K+ L I + + + E + ++FV A++ ++ G
Sbjct 377 KS-ESGSEELTKRGYISSKVNTLINIF-KSFGSSNEVLCLIFVDRIITAKAVERFMRGIV 434
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
S LTG + ++ Q+ LD F+A G N+L T V +EG+D+ C+
Sbjct 435 NFSCFSISYLTGGSTSKD--ALSPAVQRFTLDLFRA-GKVNLLFTTDVTEEGVDVPNCSC 491
Query 712 VILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI 753
VI ++ V +Q+RGR R S+ L+ + ++E I
Sbjct 492 VIRFDLPRTVCSYVQSRGRARRNNSEFILMIERGNLQQQEHI 533
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL4 PE=2 SV=1
Length=1657
Score = 372 bits (954), Expect = 1e-108, Method: Composition-based stats.
Identities = 142/573 (25%), Positives = 229/573 (40%), Gaps = 84/573 (15%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
R YQL+L A++ +N I+ TGCGKT +++L+ + + +F A IP+
Sbjct 30 ARKYQLDLCKRAVE-ENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAPTIPL 88
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
QQ V + + G + ++ E + +++++TPQIL+ +L+ I
Sbjct 89 VRQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEVLVMTPQILLQSLRHCFI-K 147
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA--- 417
++ L+I DECH+ K+HPY IM + + S P+V G+TAS +G
Sbjct 148 MNSIALLILDECHHAQPQKRHPYAQIMKEFYNS---NSVEKFPRVFGMTASPIIGKGVMP 204
Query 418 ---------------------KNTDEALDY---ICKLCASLDASVIATVKHNLEELEQVV 453
K L+Y I L L A V + EELE VV
Sbjct 205 SHSFTEKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAKVC---SVDNEELESVV 261
Query 454 YKPQKFF-----------RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ-N 501
P + + D K +++R + K K L++L ++ N
Sbjct 262 ASPDMEVYFYGPVNHSNLTTICIKELDSLKLQSERMLRASLCDFKDSQKKLKSLWRLHEN 321
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
F Q+ + +A F D D+ R L N + H +
Sbjct 322 IIFCLQELGSF--GALQAARTFLSFDGDKLDRREVDL----------NGSTSSFAHHYLN 369
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A L ++ AG ++E+ F K L +L
Sbjct 370 GATSILSRNKTDGSHAGSFDLEKLEEPFFSN-----------------KFSVLINVL-SR 411
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
Y L I+FVK + A+ N ++ L F K L G ++N M+ I
Sbjct 412 YGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKN--MSRNKMDAI 469
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
+ F +SG+ N+L+ATSV +EG+DI C LV+ ++ V IQ+RGR R SK +L
Sbjct 470 VQRF-SSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARMTKSKYVVL 528
Query 742 TSNAGVIEKEQINMY--KEKMMNDSILRLQTWD 772
++ +N Y E +MN+ I + D
Sbjct 529 LERENQSHEKLLNGYIAGESIMNEEIDSRTSND 561
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1
Length=1883
Score = 372 bits (954), Expect = 2e-108, Method: Composition-based stats.
Identities = 139/652 (21%), Positives = 251/652 (38%), Gaps = 97/652 (15%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
E R + W ++G K V ++ + + +D +
Sbjct 200 EHHRREARGFWERDRGGKMVFRSGTWEQESDREAKRARTQDGGSMEKKAEADRMGAAQRE 259
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-PQGQKGKVV 294
+ + R YQLE+ A K +NTI TG GKT +++L+ + K + +K V
Sbjct 260 KPVAEERARQYQLEVLEQA-KSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAV 318
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
F ++P+ Q ++++T QIL+N
Sbjct 319 FLVPKVPLVYQ-------------------------------------VLVMTAQILLNI 341
Query 355 LKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG- 413
L+ I + L+I DECH+ K+HPY+++M + P V G+TAS
Sbjct 342 LRHSII-KMDAIHLLILDECHHAVKKHPYSLVMSEFYHTT---PKEKRPAVFGMTASPVN 397
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP----------------Q 457
+ + ++ I L + LD+ V + +ELE+ V P
Sbjct 398 LKGVTSQEDCAIKIRNLESKLDSVVCTI--KDRKELEKHVPMPLEVVVQYDKAATLWSLH 455
Query 458 KFFRKVESRISD-----------KFKYIIAQLMRDTESLAKRICKDLEN------LSQIQ 500
+ +++ES + + +F RD L + + E+ + +++
Sbjct 456 EQIKQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLR 515
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALI--ISEHA 558
+ + QW + + DE + + S+L+K D L ++E A
Sbjct 516 AINYALGELGQWCAYKVAQSFLTALQ-NDERANYQVDVKFQESYLKKVVDLLHCQLTEGA 574
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQ-DLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
MK ++ N +++E+ +L E + E+ + P+++ L I
Sbjct 575 AMKSETSDVE--MQNTEKHNTNDLEEGELPDSHGEHVDEVIGAAVADGKVTPRVQALIKI 632
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + Y + I+FV+ L + P LSF++ L G N N M
Sbjct 633 LLK-YQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGH---NNNQEMRACQ 688
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
+ + F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+RGR R GS
Sbjct 689 MQDTISKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 747
Query 738 CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
L+ + + + ++ LR EA+ R + H+
Sbjct 748 YILMLERGNISHE---TFLRNARNSEETLR----KEAMERTDLSHLDGTSVL 792
>sp|Q9HE09|MFH2_SCHPO Putative ATP-dependent DNA helicase fml2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812
GN=fml2 PE=3 SV=1
Length=783
Score = 354 bits (908), Expect = 9e-108, Method: Composition-based stats.
Identities = 129/572 (23%), Positives = 234/572 (41%), Gaps = 63/572 (11%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
RNYQ E A+ N ++ PTG GKTF++ ++ ++ + FP + K++F A P+
Sbjct 112 RNYQKEFCEQAL-FHNLLLALPTGLGKTFIAAVVMLNYFRWFP---ESKIIFLAPTKPLL 167
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
QQ+ S ++G + + + + + +TPQ L N+LK+ + +
Sbjct 168 LQQRVACSNVAGMSPGATAELNGEVSPDRRLFE-YNTKRVFFMTPQTLQNDLKEHLLDAK 226
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
SI L IFDE H + H Y +M L +V+GLTA+ G A
Sbjct 227 SIICL-IFDEAHRATGNHSYAQVMRAVLRS------NSHFRVLGLTATPGSSTAS----- 274
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVV-YKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ K+ L S + ++ V +K + + S + K A L R
Sbjct 275 ---VQKVVDCLHISKLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILKSDFANLYRPY 331
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI--CKALFL 540
+ ++ + L I + Y + V+++K + E+S+I C L +
Sbjct 332 FNFLRQ-----KKLIPINCECLNIKAYTLF-VSLRKYSFSSKNVQSKEKSKIMSCFTLLI 385
Query 541 YTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
+H+ D II + ++ + + + S F ++ F L+ L +
Sbjct 386 SCAHITYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFT------SKPFAFYLEHLHN 439
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPET----ITILFVKTRALVDALKNWIEGNPKLSF 655
+ S +PK+ L +L+E + E ++F + R + + +
Sbjct 440 KIQGLSLNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIR--PM 497
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
++ + G+ + +TGM QK +D F+A G N L+ATS+ +EG+DI +++I Y
Sbjct 498 VRASLFIGQANSAYSTGMNQMQQKETIDQFRA-GVINTLVATSIGEEGLDIGDTDMIICY 556
Query 716 EYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + I+ IQ GR GR + K F+L + E K + S R+Q E
Sbjct 557 DASSSPIRTIQRMGRTGRKKSGKVFVLLT-------EDCEDSKWERSQVSYRRVQKVIE- 608
Query 775 VFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
K I ++ P+ +P
Sbjct 609 -----------SGKKIALKKDVPRLIPSNIQP 629
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana
OX=3702 GN=DCL4 PE=1 SV=2
Length=1702
Score = 369 bits (947), Expect = 1e-107, Method: Composition-based stats.
Identities = 127/566 (22%), Positives = 223/566 (39%), Gaps = 44/566 (8%)
Query 224 ENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK 283
++ P E + R YQ+EL A + +N I+ TGCGKT +++++
Sbjct 110 DDPSPKMEKDPRKIA-----RRYQVELCKKATE-ENVIVYLGTGCGKTHIAVMLIYELGH 163
Query 284 KFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
+K +F A + + EQQ V + G + E+ + N++
Sbjct 164 LVLSPKKSVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRIVKSHSEWEREIAANEV 223
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK--QHPYNMIMFNYLDQKLGGSSGP 401
+++TPQIL++NL+ I + +L+IFDECH+ + HPY IM + + S
Sbjct 224 LVMTPQILLHNLQHCFI-KMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSE----SLQ 278
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
P++ G+TAS VG E L +L + + +V+ N+ +L+ V P
Sbjct 279 RPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNV-QLDGFVSSPLVKVY 337
Query 462 KVESRISDKFKYII--AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA 519
S +SD + I ++ D + K L + Q Q + ++ +
Sbjct 338 YYRSALSDASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYT 397
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+ + + ++I + N + + K+ + D + ++ A
Sbjct 398 LLNLGLWGAIQAAKI------------QLNSDHNVQDEPVGKNPKSKICDTYLSMAAEAL 445
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
+ E L + + KL L IL + L P I+FV
Sbjct 446 SSG----VAKDENASDLLSLAALKEPLFSRKLVQLIKIL-SVFRLEPHMKCIIFVNRIVT 500
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
L + L K L G ++ M+ + + IL F++ + N+L+AT V
Sbjct 501 ARTLSCILNNLELLRSWKSDFLVGLSSGLKS--MSRRSMETILKRFQSK-ELNLLVATKV 557
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK-- 757
+EG+DI C LVI Y+ V IQ+RGR R S+ L + E + I +K
Sbjct 558 GEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVN 617
Query 758 ------EKMMNDSILRLQTWDEAVFR 777
E S DE +++
Sbjct 618 EDRMNLEITYRSSEETCPRLDEELYK 643
>sp|Q9VDA0|FANCM_DROME DEAD-box ATP-dependent DNA helicase Fancm
OS=Drosophila melanogaster OX=7227 GN=Fancm PE=1 SV=2
Length=1489
Score = 367 bits (941), Expect = 2e-107, Method: Composition-based stats.
Identities = 130/648 (20%), Positives = 258/648 (40%), Gaps = 54/648 (8%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
E K E +D + D C + + + NL R+YQ + A+ KN
Sbjct 20 EEQKSEDADGTRWEHCDEACDGFDMATG-HNWIYPNNLP----LRSYQQTIVQSAL-FKN 73
Query 260 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY 319
T++ PTG GKTF++ ++ + + +P KGK+VF A P+ QQ K
Sbjct 74 TLVVLPTGLGKTFIAAVVMYNFYRWYP---KGKIVFMAPTRPLVSQQIHASQKIMPFPSE 130
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT---IPSLSIFTLMIFDECHN 376
++G E + + + TPQ++ +++ + L++ DE H
Sbjct 131 DTVQLTGQLPRPKRAE-LWASKRVFFATPQVVHSDMLEADGECSFPFGSIKLIVVDEAHR 189
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD-YICKLCASLD 435
++ Y + + + +++ L+A+ G + YI L D
Sbjct 190 AKGRYAYTQVADCLMAR------NRYFRMLALSATPGRTMEDVAAVCRNLYISNLQVRWD 243
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM-----RDTESLAKRIC 490
S+ + + +V ++ ++ R+ + + QLM + + R
Sbjct 244 TSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQLMEAEIFKGNKGTVSRNS 303
Query 491 KDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 550
E S ++ G Q++ + + M M + L ++ ++ +D
Sbjct 304 LLFEQKSFVERSAQG-QRHPDHNIIMGNFAMCISMYHSLDLMER-HGLRVFVNNFDADDD 361
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK 610
AR + + ++ + A D +T E+ + D + K
Sbjct 362 GREKFVLARDGNLRNLVEQVRQELGANPLDYTTHAMTN------GEVPPLPSDLDFGHAK 415
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT-NQ 669
E L +L + + NP++ I+F + R V + + + L+P G+G T
Sbjct 416 YEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHR--PVLRPRCFVGQGSTVGA 473
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ +T Q I+ F+ SG N+L+ATS+ +EG+D+ + +++ ++ N + IQ
Sbjct 474 SYALTQKQQLQIMTDFR-SGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRI 532
Query 729 GR-GRARGSKCFLLTSNAGVIE--------KEQINMYKEKMMNDSILRLQTWDE-AVFRE 778
GR GR + + +L + + K+QIN +K++N S+++L +++
Sbjct 533 GRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQIN---KKLLNSSVVKLSLYEQNPRMVP 589
Query 779 KILHIQTHEKFIRD-SQEKPKPVPDKENKKLLCRKCKALACYTADVRV 825
+ EK + ++EKPKP + K+ RK K T +R
Sbjct 590 SKFQPKCEEKHMEPVAEEKPKPKSAAKTKE--SRKRKQPVAQTGSLRK 635
>sp|Q7SCC1|DCL2_NEUCR Dicer-like protein 2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) OX=367110 GN=dcl-2 PE=2 SV=4
Length=1534
Score = 364 bits (934), Expect = 2e-106, Method: Composition-based stats.
Identities = 146/647 (23%), Positives = 250/647 (39%), Gaps = 62/647 (10%)
Query 188 VEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT-NLYSPFKPRNY 246
V++ + +D E D + +E + + P E++D + + R Y
Sbjct 15 VDRDDSSQDPDDNESFKSALDEPLDLKELYQDALEKPSEEPSEELNDQVSTPAALTARAY 74
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
QLE+ ++K +N I+ + +++ + H + G++ F + + QQ
Sbjct 75 QLEMFEASLK-QNIIVALFSD------RVMVADGHWQ---WQDSGRIWFLTPTVALARQQ 124
Query 307 KSVF-SKYFERHGYRVTGISG--ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
V S+ + G G + +E + ++ N I++ T QIL + + L
Sbjct 125 HRVLQSQIPSVKAIMLCGQDGVDSWSEQAVWDAVLLNVRIVVSTYQILFDANAHSFV-RL 183
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
+L++ DE HN S HP +M + P+P ++GLTAS
Sbjct 184 DSLSLIVIDEAHNCSGSHPIARLMTEAYLPA-KKAGLPVPSILGLTASPLKS------NN 236
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE 483
L I KL LDA V T + EEL V +P+ +D + + R E
Sbjct 237 LADIEKLEQVLDA-VCRTPTIHREELLAHVNRPEMLVVSYGDSGTDPTPTDL--MTRFLE 293
Query 484 SLAK-RICKDLENLS-QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+ + I KD + L + Q E +K Q I K L
Sbjct 294 AYHRLDISKDPDVLLLKAQRTERAREKLRQ---------------------MITKKDTLA 332
Query 542 TSHLR-KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE-- 598
LR YN AL++ A YL S++ A + E L+ +
Sbjct 333 QKELRGVYNRALLVRREIGPWAADYYLTRTVSHMLAELERGEPPAQHRYIGEALRSIPIP 392
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS-FLK 657
++S++P +PK++ L +L + I+FVK R +V + + I +P +
Sbjct 393 AISKEPIQLSPKVQTLLKVLASHQQDP---VGIVFVKERVMVSIVTHIISTHPLTKDRYR 449
Query 658 PGILTGR----GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+ G GK + MT L+ F+ G N+L+ATSV +EGID+ CNLVI
Sbjct 450 TASMIGTASVPGKARNHMDMTKKEDMTSLEGFRL-GRFNLLVATSVLEEGIDVPICNLVI 508
Query 714 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
++ N+ IQ RGR R S +L+ NA + + M ++ E
Sbjct 509 CFDEPSNIKSFIQRRGRAREVSSTLYLMVQNASSESATDWHNLERLMKERYEDEMRQNAE 568
Query 774 AVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLL-CRKCKALACY 819
+ I ++ +S + D + C K + + Y
Sbjct 569 LELLDDPR-IGSYPVLEVESTGARMTIRDARSHLNHFCAKVSSRSRY 614
>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) OX=306901 GN=DCL1 PE=3 SV=2
Length=1607
Score = 364 bits (935), Expect = 3e-106, Method: Composition-based stats.
Identities = 138/720 (19%), Positives = 272/720 (38%), Gaps = 92/720 (13%)
Query 186 WIVEKGIKDVETEDLEDKMETS----DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF 241
WIV K + +K D+ I + + L + + +L F
Sbjct 70 WIVNDSRK---PRKISEKKRADHAAFDVWIEENQQDLSKGLDKFIVDDDGKTFQSLIRDF 126
Query 242 K-------PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI----CEHHLKKFPQGQK 290
+ PR+YQLEL A K +NTI TG GKT ++ L+ ++ L+ +
Sbjct 127 ENKRIITSPRDYQLELFERA-KTQNTIAVLDTGSGKTLIAALLLRWTIQNELEDRSKRLP 185
Query 291 GKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
++ F +++ + QQ +V + + + G + + N I+ T +
Sbjct 186 KRIAFFLVDKVALVFQQHAVLACNLDYPLEKFCGDMVEDVTQDFWHKTFDENMAIVCTAE 245
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI-GL 408
IL L I + L++FDE H+T K HPY I+ ++ + ++ +
Sbjct 246 ILYQCLTHSYI-RMDQVNLLVFDEAHHTKKNHPYARIIKDFYAE--VKDLNKRLRISRAM 302
Query 409 TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
TAS + +L L + + + L K ++ +
Sbjct 303 TASPVDAQIDP---KIARSPELEGLLHSQIATV--ADPTALHNSSTKLKREVTVEYGKCL 357
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 528
+F+ + + ++D + K + E G +++ + V ++ K
Sbjct 358 PEFETGLNRALKDLVGEHRLFQK-PFAFTATAASELGPWCADRYWQLFFRGEEVVKLEAK 416
Query 529 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 588
E + K+ + + + +
Sbjct 417 TEREILRKSAYSQEI-------------------------------------AAQVNKVR 439
Query 589 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWI 647
+ + E S + K+ L IL+ E+ ++ + I+FV+ R + L + +
Sbjct 440 EAHRLVGQHEFASPSSDLLSSKVVILLRILRGEFRGVDHKRRCIVFVRQRNVASLLTDLL 499
Query 648 EG-NPKLSFLKPGILTGRGK---TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ ++ L+PGIL G G+ + N +T Q + FK G+ N + ATSVA+EG
Sbjct 500 QQPEMRIPGLEPGILVGGGRPEASYDNAKVTYRDQVLTIIKFK-KGELNCIFATSVAEEG 558
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
+DI CN++I Y+ +I+ IQ+RGR R GS + + +++ +E
Sbjct 559 LDIPDCNVIIRYDLNNTLIQYIQSRGRARQEGSIYIHMVESENEEHVKKVCQNQE----- 613
Query 764 SILRLQTWDEAVFREKILHIQTHEK---FIRDSQEKPKPVPDKENKKLLCRKCKALACYT 820
S L+ + EA+ ++ L + ++ ++ VP+ + + LA +
Sbjct 614 SEDALRKFCEALPADRKLTGNNFDMEYFLRKEKDQRQYTVPETGARLNYKQSLICLAAFV 673
Query 821 ADV----RVIEECHYTVLG-DAFKECFVSRPHPKPKQFSSFEKRAKIFCAR--QNCSHDW 873
A + V Y VL +C V+ P P + ++ K++ ++ CS +
Sbjct 674 ASLPHPPEVNLTAGYLVLSVPGGYQCEVTLPESSPIRSAT----GKVYASKAVAKCSAAY 729
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1
Length=1410
Score = 357 bits (915), Expect = 3e-104, Method: Composition-based stats.
Identities = 106/565 (19%), Positives = 211/565 (37%), Gaps = 37/565 (7%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQIP 301
R YQLE A++G NT+ TG GKT +++++ + + + + VF +
Sbjct 34 ARWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query 302 VYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ QQ V ++ + + G G + +E+ +++++TPQIL++NL+
Sbjct 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLPQVIGLTASVGVGDAKN 419
L L+IFDECH+ PY I + +L S S PLP++ G++AS+ N
Sbjct 153 -RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN 211
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
I ++ +++ V L + + +
Sbjct 212 PHNYSKQISEIENLMNSKVYTVDSE--SALSEYIPFASTKIVDFDDS------------- 256
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ L I L L++ + + + ++ + L
Sbjct 257 NISSELHANILSCLNRLNKKHIEALDRKLHGSSLENAKQRISKLHHTFVYCLYNLGVWLA 316
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
+ ++ Y + + + ++ F N E+ L + E
Sbjct 317 AKAAEVQSYEENSLSFWGETLDK---NVEGFIRNYSEEVHRELSCFLKNG---HIGEKFP 370
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
PK+ L L +Y + I+FV+ L++ + ++S
Sbjct 371 ADSQDGILTPKVHCLIRTLL-QYRHMQDLRCIVFVERVITSIVLEHLLSSIHQMSGWNVK 429
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ G + + I+++F+ G +I+IAT + +EG+D+ CNLVI ++
Sbjct 430 HMAGSRPGLLSQ--SRKNHTEIVESFR-KGKVHIIIATQILEEGLDVPSCNLVIRFDPSA 486
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY--KEKMMNDSILRLQTW-DEAVF 776
V IQ+RGR R S LL V + + ++M + LRL + + +
Sbjct 487 TVCSFIQSRGRARMENSDYLLLVGRGDVEAQTNAEKFLASGQIMREESLRLGSISCQPLE 546
Query 777 ----REKILHIQTHEKFIRDSQEKP 797
+ +++ + + P
Sbjct 547 NTLCEDTYYRVESTRAIVTLNSSVP 571
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza
sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2
Length=1377
Score = 354 bits (908), Expect = 2e-103, Method: Composition-based stats.
Identities = 105/540 (19%), Positives = 202/540 (37%), Gaps = 33/540 (6%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQIP 301
R YQLE A++G NT+ TG GKT +++++ + + + + VF +
Sbjct 34 ARWYQLEALERAVRG-NTLAFLETGSGKTLIAVMLLRAYAHRVRRPDSRRFAVFLVPTVV 92
Query 302 VYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ QQ V ++ + + G G + +E+ +++++TPQIL++NL+
Sbjct 93 LVGQQARVVEQHTDLVVKQFCGEMGVDFWDAATWRSQLEDGEVLVMTPQILLDNLRHSFF 152
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS-SGPLPQVIGLTASVGVGDAKN 419
L L+IFDECH+ PY I + +L S S PLP++ G++AS+ N
Sbjct 153 -RLQDIALLIFDECHHARGNTPYACIFKEFYHPQLNSSASDPLPRIFGMSASLIYSKDLN 211
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
I ++ +++ V L + + +
Sbjct 212 QHNYSKQISEIENLMNSKVYTVDSE--SALSEYIPFASTKIVHFDDS------------- 256
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ L I L L++ + + + ++ + L
Sbjct 257 NISSELHANILSCLNRLTKKHIEALDRKLHGSSLENAKQRISKLHRTFVYCLYNLGVWLA 316
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
+ ++ Y + + + ++ F N E+ L + E
Sbjct 317 AKAAEVQSYEENSLSFWGETLDK---NVEGFIRNYSEEVHRELSCFLKNG---HIGEKFP 370
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
PK+ L L +Y + I+FV+ L+ + ++S
Sbjct 371 ADSQDGILTPKVHCLIRTLL-QYRHMQDLRCIVFVQRVITSIVLEPLLSSIHQMSGWNVK 429
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ G + + I+++F+ G +I+IAT + +EG+D+ CNLVI ++
Sbjct 430 HMAGSRPGLLSQ--SRKNHTEIVESFR-KGKVHIIIATQILEEGLDVPSCNLVIRFDPSA 486
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY--KEKMMNDSILRLQTW-DEAVF 776
V IQ+RGR R S LL V + ++M + LRL + + +
Sbjct 487 TVCSFIQSRGRARMENSDYLLLVGRGDVEAHTNAKKFLASGQIMREESLRLGSISCQPLE 546
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus
OX=10029 GN=DICER1 PE=2 SV=3
Length=1917
Score = 352 bits (902), Expect = 2e-101, Method: Composition-based stats.
Identities = 133/587 (23%), Positives = 227/587 (39%), Gaps = 104/587 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C TG GKTF+++L+ + H ++ + + VF
Sbjct 42 YTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
G + SLS L++FDECH HPY IM KL S P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTASILNGK 213
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+E + I KL L S T +L L++ +P + +D+
Sbjct 214 CDP-EELEEKIQKLEKIL-KSNAETAT-DLVVLDRYASQPCEIVVDCGP-FTDRSGLYER 269
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
LM E++ D + ++E + + I++ +A +V P C
Sbjct 270 LLMELEEAIN--FINDCNV--SVHSKERDSTLISKQILSDCRAVLVVLGP-------WCA 318
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
+++ Y+K + + L + +
Sbjct 319 DKVAGM----------------MVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEH 362
Query 597 LESVSRDPSNENPKLEDLCFILQEE----------------------------------- 621
S D PK+ L IL++
Sbjct 363 FSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDE 422
Query 622 ---YHLNPET----------ITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGR 664
PET I+FV+ R L I+ +P+L+++ +TG
Sbjct 423 EIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGH 482
Query 665 G-----KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G ++ Q+ +L F+A + N+LIATSV +EG+DI +CNLV+ ++
Sbjct 483 GIGKNQPRSKQMEAEFRKQEEVLRKFRAH-ETNLLIATSVVEEGVDIPKCNLVVRFDLPT 541
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
+Q++GR RA S +L + +E + YK EK++ +
Sbjct 542 EYRSYVQSKGRARAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRN 588
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens
OX=9606 GN=DICER1 PE=1 SV=3
Length=1922
Score = 349 bits (894), Expect = 2e-100, Method: Composition-based stats.
Identities = 129/587 (22%), Positives = 220/587 (37%), Gaps = 104/587 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
G + SLS L++FDECH HPY IM KL + P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGK 213
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+E + I KL L S T +L L++ +P + +D+
Sbjct 214 CDP-EELEEKIQKLEKIL-KSNAETAT-DLVVLDRYTSQPCEIVVDCGP-FTDRSGLYER 269
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
LM E+L D N+S T +Q + + +V D+ + +
Sbjct 270 LLMELEEALN--FINDC-NISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMV 326
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
Y+K + + L + +
Sbjct 327 RELQK------------------------YIKHEQEELHRKFLLFTDTFLRKIHALCEEH 362
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPET---------------------------- 628
S D PK+ L IL++ +
Sbjct 363 FSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDE 422
Query 629 --------------------ITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGR 664
I+FV+ R L I+ +P+L+++ +TG
Sbjct 423 EIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGH 482
Query 665 G-----KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G N+ Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct 483 GIGKNQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPT 541
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
+Q++GR RA S +L + +E + YK EK++ +
Sbjct 542 EYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus
OX=10090 GN=Dicer1 PE=1 SV=3
Length=1916
Score = 348 bits (893), Expect = 3e-100, Method: Composition-based stats.
Identities = 139/601 (23%), Positives = 233/601 (39%), Gaps = 78/601 (13%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C TG GKTF+++L+ + H ++ + VF
Sbjct 42 YTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + + LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
G + SLS L++FDECH HPY IM KL S P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCESCPSCPRILGLTASILNGK 213
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+E + I KL L + T +L L++ +P + +D+
Sbjct 214 CDP-EELEEKIQKLERILRSD-AETAT-DLVVLDRYTSQPCEIVVDCGP-FTDRSGLYER 269
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
LM +L D N++ T +Q + + +V D K
Sbjct 270 LLMELEAAL--DFINDC-NVAVHSKERDSTLISKQILSDCRAVLVVLGPWCAD------K 320
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
+ L+KY H + D L + F DL + ++
Sbjct 321 VAGMMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKL 380
Query 597 LESVSRDPSNENPKLEDLC--------------------FILQEEYHLNPET-------- 628
LE + + E + E + + E PET
Sbjct 381 LEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPSPFTN 440
Query 629 --ITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-----KTNQNTGMTLPA 677
I+FV+ R L I+ +P+L+++ +TG G ++
Sbjct 441 ILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRK 500
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
Q+ +L F+A + N+LIATSV +EG+DI +CNLV+ ++ +Q++GR RA S
Sbjct 501 QEEVLRKFRAH-ETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query 738 CFLLTSNAGVIE-KEQINMYK--EKMMN----------DSILRLQTWDEAVFREKILHIQ 784
+L + +E + YK EK++ ++ + DE F +L
Sbjct 560 YVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPD 619
Query 785 T 785
Sbjct 620 D 620
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus OX=9913
GN=DICER1 PE=2 SV=3
Length=1923
Score = 347 bits (891), Expect = 6e-100, Method: Composition-based stats.
Identities = 128/587 (22%), Positives = 220/587 (37%), Gaps = 104/587 (18%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + A+ Q + ++I+T + +N LK
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLK 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
G + SLS L++FDECH HPY IM KL + P+++GLTAS+ G
Sbjct 161 NGYL-SLSDINLLVFDECHLAILDHPYREIM------KLCENCPSCPRILGLTASILNGK 213
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+E + I KL L S T +L L++ +P + +D+
Sbjct 214 CDP-EELEEKIQKLEKIL-KSNAETAT-DLVVLDRYTSQPCEIVVDCGP-FTDRSGLYER 269
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
LM E+L D N+S T +Q + + +V D+ + +
Sbjct 270 LLMELEEALN--FINDC-NISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMV 326
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
++K + + L + +
Sbjct 327 RELQK------------------------HIKHEQEELHRKFLLFTDTFLRKIHALCEEH 362
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPET---------------------------- 628
S D PK+ L IL++ +
Sbjct 363 FSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDE 422
Query 629 --------------------ITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGR 664
I+FV+ R L I+ +P+L+++ +TG
Sbjct 423 EIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGH 482
Query 665 G-----KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G N+ Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct 483 GIGKNQPRNKQMEAEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPT 541
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMND 763
+Q++GR RA S +L + +E + YK EK++ +
Sbjct 542 EYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRN 588
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio OX=7955
GN=dicer1 PE=2 SV=2
Length=1865
Score = 343 bits (879), Expect = 2e-98, Method: Composition-based stats.
Identities = 125/556 (22%), Positives = 234/556 (42%), Gaps = 46/556 (8%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+ PR YQ+EL A++ NTI+C TG GKTF+++L+ + + + VF N
Sbjct 32 YTPRKYQVELLEAALE-HNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAA 90
Query 301 PVYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
QQ S + + + G ++ + E + +++EN ++++T I ++ LK G
Sbjct 91 SSVAQQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIEN-QVLVMTCHIFLHVLKNGV 149
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+P LS L++FDECH HPY IM K+ P+++GLTAS+ G
Sbjct 150 LP-LSKINLLVFDECHLAITGHPYREIM------KICEGCPSCPRILGLTASILNGKCDP 202
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV-----ESRISDKFKYI 474
D + I L L S T +L L++ +P++ +S +S++
Sbjct 203 CD-LEEKIQNLEKIL-QSNAETAT-DLVVLDRYASQPREEVLDCGQYQDQSGLSERLLNE 259
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQK-----YEQWIVTVQKACM--VFQMPD 527
+ + + + ++ + + I + + W M Q
Sbjct 260 LDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKYI 319
Query 528 KDEESRICKALFLYTSHLRKYNDAL----IISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
K E+ + + L+T + + AL +K + + E +
Sbjct 320 KHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKPFERQ 379
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET----ITILFVKTRAL 639
Q + + + VS S ++ + E+ + E + I+FV+ R
Sbjct 380 QFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVERRYT 439
Query 640 VDALKNWIE----GNPKLSFLKPGILTGRG-----KTNQNTGMTLPAQKCILDAFKASGD 690
L I+ +P+L+++ +TG N+ + Q+ +L F+A +
Sbjct 440 AVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAH-E 498
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE- 749
N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L +
Sbjct 499 TNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKTF 558
Query 750 KEQINMYK--EKMMND 763
+E + YK EK++ +
Sbjct 559 QEDLKTYKAIEKILRN 574
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis
OX=8364 GN=dicer1 PE=2 SV=2
Length=1893
Score = 342 bits (878), Expect = 3e-98, Method: Composition-based stats.
Identities = 131/565 (23%), Positives = 236/565 (42%), Gaps = 59/565 (10%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C +G GKTF+++L+ + + ++ + VF
Sbjct 32 YTPRKYQVELLEAALD-HNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKRTVFLV 90
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVN 353
N QQ S + + +V S ++ E + ++++T I +N
Sbjct 91 NSEKQVSQQVSAVRTHTD---LKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLN 147
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
LK G + SLS L++FDECH + HPY IM K+ S P P+++GLTAS+
Sbjct 148 VLKSGNV-SLSNINLLVFDECHLAIQDHPYREIM------KICESCQPCPRILGLTASIL 200
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKV---------E 464
G D + I KL L S T +L L++ +P +
Sbjct 201 NGKCDPRD-LEEKIQKLEEILR-SNAETAT-DLVVLDRYASQPCEIVLDCGPYIDKSGLY 257
Query 465 SRISDKFKYIIAQLMRDTESLAKR------ICKDLENLSQIQNREFGTQKYEQWIVTVQK 518
R+ ++ + L+ S + I K + + Q G ++ + +
Sbjct 258 QRLLNELDEALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVR 317
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYN---DALIISEHARMKDALDYLKDFFSNVR 575
+ +++E R K L + LRK + + MK + +R
Sbjct 318 ELQKYIKHEQEELHR--KFLLFTDTILRKIHALCEEHFSPASLDMKFVTPKVIKLLEILR 375
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-----IT 630
E +Q + + + VS S ++ ++ ++ P
Sbjct 376 KYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDEDEEIEEKEKTETSFPSPFTNILCG 435
Query 631 ILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRG-----KTNQNTGMTLPAQKCI 681
I+FV+ R L I+ +P+L+++ +TG G N+ + Q+ +
Sbjct 436 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEV 495
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L F+A + N+LIATS+ +EG+DI +CNLV+ ++ +Q++GR RA S +L
Sbjct 496 LRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISNYIML 554
Query 742 TSNAGVIE-KEQINMYK--EKMMND 763
+ + +E + YK EK++ +
Sbjct 555 ADSDKIKAFEEDLKTYKAIEKILRN 579
>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=MPH1 PE=3 SV=3
Length=1050
Score = 334 bits (855), Expect = 7e-98, Method: Composition-based stats.
Identities = 122/619 (20%), Positives = 240/619 (39%), Gaps = 85/619 (14%)
Query 216 DPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL 275
+ + V +N F+ R+YQ + A N ++ PTG GKTF++
Sbjct 65 LGPTHHKIDYGNLDKYVYPSN----FEVRDYQFNIVQRAFY-HNLLVALPTGLGKTFIAS 119
Query 276 LICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
+ + L+ FP + K++F A P+ QQ +V + T +N
Sbjct 120 TVMLNFLRWFP---ESKMIFVAPTKPLVAQQIKACCSITGIPSSKVAILLDKTRKN--RG 174
Query 336 QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL 395
+I + + TPQ++ N+L G + + L++ DE H + YN I+ ++D+
Sbjct 175 EIWDEKQVFFTTPQVVENDLASGLVDPKT-IALLVIDEAHRAKGNYAYNNIVK-FMDRFT 232
Query 396 GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 455
+++ LTA+ +D + ++ +L+ S + ++ + + +
Sbjct 233 NSY-----RILALTATP--------ASDVDGVQEIIDNLNISKVEVRSEESIDIIKYMKR 279
Query 456 PQKFFRKVESRISDKFKYIIAQLMRDTES-LAKRICKDLENLSQIQNREFGTQKYEQWIV 514
+ R + SD+ K I L L K + ++ F Q +
Sbjct 280 KRIIRRNIYQ--SDEIKECIDLLCTAIAPVLKVANGKGILEITDPSRINFF-----QCMD 332
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSH--LRKYNDALIISEHARMKDALDYLKDFFS 572
+K +P+ + S L R+ N + S + + S
Sbjct 333 ASRKIVANPTIPEGTKWSNFFTLQLLGVVGQCFRRLNVYGLRSFFSYFNEKYTEFMAKHS 392
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS-NENPKLEDLCFILQEEYHLN--PETI 629
+++ + ++ ++ ++ + ++ DP +PK+E + L E + +N ++
Sbjct 393 KKKSSNKLNADFYFSEPIKQLMKRIRTMIDDPKVFSHPKIEAMMEELDEFFTINNATDSK 452
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR------------------------- 664
I+F + R + +IE LKP I G+
Sbjct 453 VIIFTEFRESALEIVRFIEKVG--KNLKPHIFIGQAKERDKFDESNFGKKSKGKRVGKKQ 510
Query 665 -------GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
+ Q GM QK I+ FK G +NIL+ATS+ +EG+DI + +L+I Y+
Sbjct 511 QDDSKSSSENAQINGMNQKLQKEIIKNFK-QGTYNILVATSIGEEGLDIGEVDLIICYDS 569
Query 718 VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
+ IK IQ GR GR R K LL S+ +E + ++ + + +
Sbjct 570 TSSPIKNIQRMGRTGRKRDGKVVLLFSSN-----------EESKFDKAMNGYEYIQQHIM 618
Query 777 REKILHIQTHEKFIRDSQE 795
+ +++ ++ + I E
Sbjct 619 KGQLIDLKEQNRMIPKDWE 637
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus
OX=9031 GN=DICER1 PE=2 SV=3
Length=1921
Score = 337 bits (864), Expect = 2e-96, Method: Composition-based stats.
Identities = 118/602 (20%), Positives = 214/602 (36%), Gaps = 104/602 (17%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFFA 297
+ PR YQ+EL A+ NTI+C TG GKTF+++L+ + + ++ + VF
Sbjct 42 YTPRKYQVELLEAALD-HNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLV 100
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLK 356
N QQ S + + + + + Q + ++++T + + L+
Sbjct 101 NSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLR 160
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ SLS L++FDECH + HPY IM K+ P+++GLTAS+ G
Sbjct 161 NEYL-SLSNINLLVFDECHLAIQDHPYREIM------KICEDYPSCPRILGLTASILNGK 213
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+ + AT +L L++ +P + +DK
Sbjct 214 CDPAELEEKIKKLEKILKSNAETAT---DLVVLDRYTSQPCEIVVDCGPY-TDKSGLYGR 269
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
L E+L + N+S T +Q + + +V D+ + +
Sbjct 270 LLRELDEALH---FLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMV 326
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
Y+K + + L + +
Sbjct 327 RELQK------------------------YIKHEQEELHRKFLLFTDTFLRKIHALCEEH 362
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPET---------------------------- 628
S D PK+ L IL++ +
Sbjct 363 FSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDE 422
Query 629 --------------------ITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGR 664
I+FV+ R L I+ +P+L+++ +TG
Sbjct 423 EIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGH 482
Query 665 G-----KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G N+ + Q+ +L F+A + N+LIATS+ +EG+DI +CNLV+ ++
Sbjct 483 GIGKNQPRNKQMEVEFRKQEEVLRKFRAH-ETNLLIATSIVEEGVDIPKCNLVVRFDLPT 541
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIE-KEQINMYK--EKMMNDSILRLQTWDEAVF 776
+Q++GR RA S +L + +E + YK EK++ + + E
Sbjct 542 EYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETET 601
Query 777 RE 778
Sbjct 602 EP 603
>sp|I3XHK1|FANCM_ARATH DEAD-box ATP-dependent RNA helicase FANCM
OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1
Length=1344
Score = 333 bits (854), Expect = 4e-96, Method: Composition-based stats.
Identities = 118/618 (19%), Positives = 237/618 (38%), Gaps = 72/618 (12%)
Query 230 SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ 289
+ + N P R+YQ + A+ NT++ PTG GKT ++ ++ ++ + FPQ
Sbjct 106 TWIYPVNGSVPL--RDYQFAITKTALFS-NTLVALPTGLGKTLIAAVVMYNYFRWFPQ-- 160
Query 290 KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
GK+VF A P+ QQ ++G T + + ++ + +TPQ
Sbjct 161 -GKIVFAAPSRPLVMQQIEACHNIVGIPQEWTIDLTGQTCPSKRA-FLWKSKRVFFVTPQ 218
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 409
+L +++ GT + + L+I DE H + Y +++ + + +++ LT
Sbjct 219 VLEKDIQSGTCLTNYLVCLVI-DEAHRALGNYSYCVVVRELMAVPIQL------RILALT 271
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
A+ G I + +L S + + ++ V+ + +E +
Sbjct 272 ATPG--------SKTQAIQGIIDNLQISTLEYRNESDHDVCPYVH--DRKLEVIEVPLGQ 321
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA--CMVFQMPD 527
+ +L A R L+N NR+ T + ++ K + +P
Sbjct 322 DADDVSKRLFHVIRPYAVR----LKNFGVNLNRDIQTLSPHEVLMARDKFRQAPLPGLPH 377
Query 528 KDE-ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
+ + C A + H+RK + ++ A + L++ A +D+
Sbjct 378 VNHGDVESCFAALITLYHIRK------LLSSHGIRPAYEMLEEKLKEGPFARLMSKNEDI 431
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH--LNPETITILFVKTRALVDALK 644
R + L + P +PKL + IL + + + I+F R V +
Sbjct 432 --RMTKLLMQQRLSHGAP---SPKLSKMLEILVDHFKVKDPKTSRVIIFSNFRGSVRDIM 486
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
N + + +K G+ G + Q+ +L+ F+A G N+++ATS+ +EG+
Sbjct 487 NALSNIGDM--VKATEFIGQSSGKTLKGQSQKIQQAVLEKFRAGG-FNVIVATSIGEEGL 543
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
DI + +LVI ++ + ++MIQ GR GR + +L +
Sbjct 544 DIMEVDLVICFDANVSPLRMIQRMGRTGRKNNGRVVVLACEGSEK--------------N 589
Query 764 SILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCR--KCKALACYTA 821
S +R Q A+ + + + T+ P+ +P ++ K
Sbjct 590 SYMRKQASGRAIKKH-MRNGGTNSFNFHP---SPRMIPHVYKPEVQHVEFSIKQFVPRGK 645
Query 822 DVRVIEECHYTVLGDAFK 839
++ Y AF+
Sbjct 646 KLQE----EYATETPAFQ 659
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) OX=284812 GN=dcr1 PE=1 SV=1
Length=1374
Score = 330 bits (847), Expect = 4e-95, Method: Composition-based stats.
Identities = 124/538 (23%), Positives = 224/538 (42%), Gaps = 59/538 (11%)
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KV-VFFA 297
R YQ ++ A K +NT++ TG GKT +++ + + L++ Q+ K+ VF
Sbjct 13 RKYQQDVYNIASK-QNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLV 71
Query 298 NQIPVYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
N++P+ QQ + G +S +E + I++ N +I++T + L
Sbjct 72 NKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLLTNIILKYN-VIVITADLFYLFLA 130
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK---LGGSSGPLPQVIGLTASVG 413
+G + S++ L+IFDECH+ Y IM ++ + L LP++ G+TAS
Sbjct 131 RGFL-SINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPF 189
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
G N L +L S V EL P++ + +++
Sbjct 190 TGKKGNLYHRLYQWEQLFDSKAHVVSEN------ELADYFCLPEESYVMYSNKLVVPPSD 243
Query 474 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
I + +T K I + ++ + + + G EQ + + ++ K
Sbjct 244 SIIKKCEETLQGCKLISRAVKT-ALAETIDMGLWFGEQVWLYLVDFVETKRLKKK----- 297
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
AL + A+D LK F + + + + +
Sbjct 298 -----------------ALGKQLSDDEELAIDRLKIFVEDWKNNKYSDNGPRIPVF---- 336
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
D ++ K+ L +L+ Y + T++FV+ +A L L
Sbjct 337 ---------DSTDVTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTLS-LFMKTLNL 386
Query 654 SFLKPGILTGRGKTNQNT-GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
++ G G ++Q MT QK L FK +G +N+LIAT+VA+EGID+ CNLV
Sbjct 387 PNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFK-TGKYNVLIATAVAEEGIDVPSCNLV 445
Query 713 ILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
I + V + +Q+RGR RA SK + + ++ E+I +++EK + ++ L
Sbjct 446 IRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERI-LHEEKNLKFALSELSN 502
>sp|A2QX45|DCL22_ASPNC Dicer-like protein 2-2 OS=Aspergillus niger
(strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011
GN=dcl2-2 PE=3 SV=2
Length=1362
Score = 330 bits (847), Expect = 4e-95, Method: Composition-based stats.
Identities = 131/556 (24%), Positives = 220/556 (40%), Gaps = 96/556 (17%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF-ANQ 299
+ R YQLE+ ++K +N I+ PTG GKT V++L L +G K V+
Sbjct 21 LRIREYQLEMLNESLK-RNLIVVMPTGTGKTQVAILRI---LADIDKGNSDKFVWLLCPT 76
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ + EQQ ++ F G + + + I + T Q+L + L G
Sbjct 77 VALSEQQYIQYATVFLPSGAE---------DKAIWDNALSGIKIAVSTYQVLYDALSHGF 127
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ LS +L+IFDE H+ K H N IM + ++ LP+++GLTAS + D +
Sbjct 128 V-KLSQMSLLIFDEAHHCKKDHVANKIMQVHYHKQHQSGVQNLPKILGLTASPILSDLSS 186
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR---------KVESRISDK 470
+ + S S+ T + +L Q +P R V++ I +K
Sbjct 187 LE--------IVESNLGSICKTPRQYYAQLLQFTNRPLILPRLPTYTIPNCSVKAPILEK 238
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQ-IQNREFGTQKYEQWIVT--VQKACMVFQMPD 527
I++ + S +K K L+++ + +Q E Q+ W T ++K+ M F+
Sbjct 239 LCGILSS-EDEVPSSSKMKSKQLKHIRRFMQTSESINQELGIWAATEYMRKSIMHFK--- 294
Query 528 KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLT 587
E R+ A + +Y KDF +
Sbjct 295 --ESMRM----------------------GAEKTNISNYGKDFAMEI------------- 317
Query 588 QRFEEKLQELESVSRD--PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+L +L+ S P +P + L L + Y ++FV RA V ALK
Sbjct 318 ---LTRLGKLQDCSPAIQPEEISPMCQCLLDELSKAYR--EGFCGLVFVTQRATVLALKW 372
Query 646 WIEGNPKLSFL-KPGILTGRGKTNQNTG-----MTLPAQKCILDAFKASGDHNILIATSV 699
IE +P S L G G T + + Q L+ F+ G N++I T
Sbjct 373 LIENHPLTSHLFTCGTFIGMSTTQYSKTELGNLHDIRNQTETLEKFR-QGSLNLIITTDA 431
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+EGID+ CN V+ + ++ IQ RGR R S+ ++ + Y ++
Sbjct 432 LEEGIDVPACNTVLNFNCQLSLKSFIQRRGRARRENSQFIIIMEDESGPR------YLKR 485
Query 760 MMNDSILRLQTWDEAV 775
+ + I +Q A
Sbjct 486 LEMEEIELVQKLQNAE 501
>sp|Q5A1A0|MPH1_CANAL ATP-dependent DNA helicase MPH1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MPH1
PE=3 SV=2
Length=1187
Score = 326 bits (835), Expect = 3e-94, Method: Composition-based stats.
Identities = 129/673 (19%), Positives = 255/673 (38%), Gaps = 91/673 (14%)
Query 171 LKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPS 230
+ L+ +K +E + V T DK ET + + + + +
Sbjct 71 FQAILQGNSSKGPAQRTLEGSVAAVSTRPQNDKYETIPVPVKINT--PTHHAMDFENLKT 128
Query 231 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK 290
+ TN F+ R+YQ + A N ++ PTG GKTF++ + + L+ FP
Sbjct 129 YIYPTN----FEIRDYQYNIVERAFYD-NLLVALPTGLGKTFIASTVMLNFLRWFPI--- 180
Query 291 GKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI 350
K++F A P+ QQ +V + T N +I + + TPQ+
Sbjct 181 SKIIFMAPTRPLVAQQIKACCSIAGIPSSKVAILLDKTRRN--RAEIWNSRQVFFTTPQV 238
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
+ N+L G + S L++ DE H + YN ++ ++++ +++ LTA
Sbjct 239 VENDLASGVVNPKS-IALLVIDEAHRAKGNYSYNNVVK-FINRFSDSY-----RILALTA 291
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE--SRIS 468
+ ++ + ++ +L+ S + ++ + + + + S I+
Sbjct 292 TP--------ASDVEGVQQIIDNLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEIT 343
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 528
+ + + + + +R DL + ++I + Q + +K +P+
Sbjct 344 ECIELLAEGITPVLNTAKERGLLDLTDPTRI--------NFLQCMEISRKIVANPTIPEG 395
Query 529 DEESRICKALFLYTSH--LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
+ S L R+ N I S + + K ++ ++ +
Sbjct 396 LKWSNYFILQLLGMVGQCYRRLNIYGIRSFQSYFNEKFLEFKTKWNAKKSTNKLNADFYF 455
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY--HLNPETITILFVKTRALVDALK 644
+ + +E +S+ + +PK+E L L + + H + I+F + R +
Sbjct 456 SDPITTLMDRVEELSKTLTYGHPKIEALMEELDDFFKNHETAGSRVIIFTEFRESALEIV 515
Query 645 NWIEGNPKLSFLKPGILTGRGKTN----------------------------------QN 670
IE KP I G+ K Q
Sbjct 516 QCIEK--ANDNRKPHIFIGQSKEKEKFDVENFGKKKQKGQTKKKKDERPSTRSSSENAQM 573
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
TGM+ QK I+ FK G NIL+ATS+ +EG+DI + +L+I Y+ + IK IQ GR
Sbjct 574 TGMSQKLQKEIIKKFK-KGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKNIQRMGR 632
Query 731 -GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
GR R K +L S+ +E + ++ + + + + + ++ +
Sbjct 633 TGRKRDGKVLMLFSSN-----------EESKFDKAMGGYEYIQQHIMKGDFIQLRPQHRM 681
Query 790 IRDSQEKPKPVPD 802
I + KP+ V
Sbjct 682 I-PDEYKPEAVKQ 693
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1505
PE=3 SV=2
Length=778
Score = 317 bits (812), Expect = 5e-94, Method: Composition-based stats.
Identities = 124/536 (23%), Positives = 231/536 (43%), Gaps = 66/536 (12%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
+ R YQ +A A+K K T+ TG GKT +++L+ L K + GKV+ A
Sbjct 12 TLEARLYQQIIAANALKKK-TLCVLSTGLGKTAIAILVIAGILTK----KDGKVLILAPS 66
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
P+ EQ + + ++ ++G E + + I I TPQ++ N++ G
Sbjct 67 RPLVEQHYNRLKQVLNIDEDKIIALTGKIQPKKRAE-LYKKGKIFIATPQVIENDIIAGR 125
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
I + F L+I DE H+T+ H Y + + D+ ++GLTAS G
Sbjct 126 IN-VDEFILLIADEAHHTTGDHAYAFVAKKFKDK---------CHILGLTASPG------ 169
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+D + ++C +L + + E+++ + K + +++ + ++FK + +L+
Sbjct 170 --SDIDKVMEICENLGIEHVEVRTEDDEDVKPYIAKVKLIPIRID--LPNEFKRAL-KLI 224
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ +I KD ++ I + K E + LF
Sbjct 225 NEALKERLKILKDAGVINSIADVT------------------------KTELIELNNKLF 260
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKD-----FFSNVRAAGFDEIEQDLTQRFEEKL 594
Y + KY + SE ++ A + L+ F + + + + +EK+
Sbjct 261 SYDEEV-KYELIKVCSEALKLMHAKELLESQGKSVFLNYINKLSMQRTKSAKSIVNDEKV 319
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
+E ++ E+PKL + +++ N + I+F + R V+ + N + N
Sbjct 320 REAVNLLMKSDVEHPKLGKVVDMVKNILEKNKDERIIIFAQYRDTVEKIVNLLTQN---- 375
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
+K G+ + GM+ Q ++ FK G +L++TSV++EGIDI N +I
Sbjct 376 GIKAIRFIGQAN-KEGKGMSQKEQIEAIERFKKEGS--VLVSTSVSEEGIDIPSVNYIIF 432
Query 715 YEYVGNVIKMIQTRGRG-RARGSKCFLLTSNAGVIEK-EQINMYKEKMMNDSILRL 768
YE V + I+ IQ RGR R G K ++L + E + +YKE+ M + +
Sbjct 433 YEPVPSEIRFIQRRGRAMRGEGGKVYVLIAKGTADEAYYRSALYKEREMKRLLKNM 488
>sp|Q6BRF0|MPH1_DEBHA ATP-dependent DNA helicase MPH1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MPH1 PE=3 SV=2
Length=1105
Score = 320 bits (819), Expect = 1e-92, Method: Composition-based stats.
Identities = 127/626 (20%), Positives = 234/626 (37%), Gaps = 93/626 (15%)
Query 208 DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTG 267
D Y E P + S + TN F+ R+YQ + A N ++ PTG
Sbjct 56 DSSKGYTELPPTHHALNYENLSSYIYPTN----FEVRDYQFNIVQRAFYD-NLLVALPTG 110
Query 268 CGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
GKTF++ + + + FP+ GK++F A P+ QQ V +
Sbjct 111 LGKTFIASTVMLNFTRWFPR---GKIIFMAPTKPLVAQQIKACCGITGIPTSEVAIL--L 165
Query 328 TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 387
I ++ + TPQ++ N+L G I + L++ DE H + + YN ++
Sbjct 166 DKSRRNRADIWDSKTVFFTTPQVVENDLTAGIIDPKEVV-LLVIDEAHKSKGNYAYNNVV 224
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
K +++ LTA+ ++ + ++ +L S +
Sbjct 225 ------KFITRFNISFRILALTATP--------ASDVEGVQEIIDNLSISKVEVRTEQSI 270
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
++ + QK +V S + ++ L + + + +
Sbjct 271 DITKY--MKQKKIERVTVSPSVEICELVDMLCTAIQPVLSMANER----RIYDMSDPSKI 324
Query 508 KYEQWIVTVQKACMVFQMPDKDE--ESRICKALFLYTSHLRKYN----DALIISEHARMK 561
Q I Q+ +P+ + I + L + LR+ N + + K
Sbjct 325 NAFQVIDASQRLLKNPTIPEGLKWQNYFILQILNVVGQALRRLNIYGIKSFYNYFDQKHK 384
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
+ K+ SN + A ++ + +K +EL ++ D +PKLE L L E
Sbjct 385 EFTIKFKNKKSNNQTAARFYFHDNI-KLILDKCKEL--IADDNFLGHPKLEILINELDEF 441
Query 622 YHLNP--ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN----------- 668
+ N ++ I+F + R + + IE S L+P I G+ K
Sbjct 442 FKENEANDSRVIIFTEFRESALDIVSSIERIG--SNLRPHIFIGQSKEKEKFDEEAYLSK 499
Query 669 --------------------------------QNTGMTLPAQKCILDAFKASGDHNILIA 696
Q GM QK ++ FK G++NIL+A
Sbjct 500 GKKGRTKGKATKGKQNSETPERSTSRTSSEDAQIKGMNQKLQKDLIKKFK-KGEYNILVA 558
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI-- 753
TS+ +EG+DI + +L++ Y+ + IK IQ GR GR R K LL + + ++
Sbjct 559 TSIGEEGLDIGEVDLIVCYDSTSSPIKNIQRMGRTGRKRDGKVLLLFAGNEESKFDKAMA 618
Query 754 --NMYKEKMMNDSILRLQTWDEAVFR 777
++ +MN ++ L + + +
Sbjct 619 GYEFIQQHIMNGRLITLAQSNRIIPK 644
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis
thaliana OX=3702 GN=DCL3 PE=1 SV=2
Length=1580
Score = 319 bits (818), Expect = 9e-91, Method: Composition-based stats.
Identities = 103/572 (18%), Positives = 226/572 (40%), Gaps = 40/572 (7%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+E E +E+ ++ ++ + E QNL S P ++D+N +Y+L++ A
Sbjct 5 LEPEKMEEGGGSNSLKRKFSEIDGDQNLDSVSSP--MMTDSNG-------SYELKVYEVA 55
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--VVFFANQIPVYEQQKSVFSK 312
K +N I TG K+ + + +K K ++F A + + +QQ
Sbjct 56 -KNRNIIAVLGTGIDKSEI----TKRLIKAMGSSDTDKRLIIFLAPTVNLVKQQCCEIRA 110
Query 313 YFERHGYRVTGISGATAE-NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
G G + ++ +D++++TPQIL++ L+ + L + L+I
Sbjct 111 LVNLKVEEYFGAKGVDKWTSQRWDEEFSKHDVLVMTPQILLDVLRSAFL-KLEMVCLLII 169
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA--KNTDEALDYICK 429
DECH+T+ HPY +M + + S P++ GLTAS + + + +
Sbjct 170 DECHHTTGNHPYAKLMKEFYHE-----STSKPKIFGLTASAVIRKGIVSSPSNYAAQVSE 224
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
L +D+ + + E K S + K + ++ +R+
Sbjct 225 LERLMDSKIFNPEEREGVEKFATTVKEGPILYNPSPSCSLELKEKLETSHLKFDASLRRL 284
Query 490 CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 549
+ ++ + +F T Q +++ + + D IC A L K +
Sbjct 285 QELGKDSFLNMDNKFETY---QKRLSIDYREI---LHCLDNLGLIC-AHLAAEVCLEKIS 337
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP 609
D SE + + K+F ++ + + QD + + L + + +P
Sbjct 338 DTKEESETYKECSMV--CKEFLEDILSTIGVYLPQDDKSLVDLQQNHL--SAVISGHVSP 393
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
KL++L +L + + + + ++ V+ ++ +++ L++L LT +
Sbjct 394 KLKELFHLL-DSFRGDKQKQCLILVERIITAKVIERFVKKEASLAYLNVLYLTENNPSTN 452
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ Q I D F+ G N+L T V +EG + C+ ++ ++ + Q++
Sbjct 453 VSA--QKMQIEIPDLFQ-HGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSYSQSQK 509
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ SK + +++ ++ + +
Sbjct 510 HAKQSNSKSIMFLERGNPKQRDHLHDLMRREV 541
>sp|A7TSV4|MPH1_VANPO ATP-dependent DNA helicase MPH1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=MPH1 PE=3 SV=1
Length=1012
Score = 310 bits (793), Expect = 2e-89, Method: Composition-based stats.
Identities = 128/706 (18%), Positives = 255/706 (36%), Gaps = 116/706 (16%)
Query 179 RNKFSELWIVEKGIKDVET---------EDLEDKMETSDIQIFYQEDPE-----CQNLSE 224
++F L+ ++ ET DL K+ + + + + + E ++ +
Sbjct 13 NDEFDNLYQKNINRRETETVIRRSIPVQRDLTGKILPNQVAYYEEIEREVTFGATHHILD 72
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
S + TN F+ R YQ + ++ +NT+ PTG GKTF++ + L
Sbjct 73 KDNFDSYIYPTN----FEVREYQFNIVQKSLY-QNTLCAIPTGMGKTFIASTVM---LNF 124
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
F + GK++F A P+ QQ + + E I +
Sbjct 125 FRWSKNGKIIFTAPTRPLVAQQIKACLGITGIPHDQAAIL--LDKSRKNREDIWTQKRVF 182
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
TPQ++ N+LK+G + I L +FDE H + + Y ++ K +
Sbjct 183 FTTPQVIENDLKRGVLNPKDIICL-VFDEAHRATGSYAYTNVV------KFIDRFNSSYR 235
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
++ LTA+ G + + ++ +L+ S I E ++ + Y +++ K+E
Sbjct 236 ILALTATPGT--------DIASVQEVVNNLNISNIEIRTE--ESMDIIRYMKKRYKEKIE 285
Query 465 SRISDKFKYIIAQLMRDTESLAKRICK--DLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
++ + + II QL + + ++ + + Q F + Q I+
Sbjct 286 IGLTTEIEMIIEQLGIAVKPVLQQAVELGIYDECHPSQINSFVAMQKSQQIIANPTIAEG 345
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
+ + + + ++ Y I S + ++ ++ ++
Sbjct 346 IKWRNFFILQLLNH-VGQMLKRIKIYG---IRSFYGYFRNKFSEFTTKYNMGKSTNKIAA 401
Query 583 EQDLTQRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEY-HLNPETITILFVKTRAL- 639
+ ++ + + + S + KL+ + L + + + ++ I+F + R
Sbjct 402 SFYYHPILKILMKNCDVYTSNSSFIGHDKLQKIINELSDFFLNSRLDSRVIIFTELRESA 461
Query 640 ----------------------------------------------VDALKNW------- 646
D LK
Sbjct 462 LEIVKTIDNMGSSSIRPHIFIGQARGKENFDDEGFIRKNKPKGRKKADRLKRLEEDKQKQ 521
Query 647 ---IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + + TG + Q +GM QK ++ FK +GD+N+L+ TS+ +EG
Sbjct 522 LSKAKQKEQEKVERSSRRTGSSEEAQISGMNQKQQKEVISKFK-NGDYNVLVCTSIGEEG 580
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+DI + +++I ++ G+ IK IQ GR GR R K LL S + E+ E +
Sbjct 581 LDIGEVDMIICFDTTGSPIKNIQRMGRTGRKRDGKILLLFSGNESRKFEKAM---EDYYD 637
Query 763 DSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
L Q + E ++IL I K EN +L
Sbjct 638 LQRLIGQNFVEYKKSDRILPSN-----ITPECRKEFIHISAENNEL 678
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis
elegans OX=6239 GN=dcr-1 PE=1 SV=3
Length=1910
Score = 314 bits (803), Expect = 2e-88, Method: Composition-based stats.
Identities = 139/614 (23%), Positives = 251/614 (41%), Gaps = 73/614 (12%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKG--KVVFFA 297
F PR+YQ+EL A K KNTI+ TG GKTF+++L+ + + ++ F +G + F
Sbjct 11 FNPRDYQVELLDKATK-KNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKRAFFVV 69
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNL 355
++ + EQQ + +V G + G +Q ++ + ++++T Q L++ +
Sbjct 70 EKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLI 129
Query 356 KKGTIPSLSIFTLMIFDECHNTSK-QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
+ + + ++IFDECH+ QHPY IM +Y KL P+P+V+GLTAS+
Sbjct 130 RHAYL-KIEDMCVLIFDECHHALGSQHPYRSIMVDY---KLLKKDKPVPRVLGLTASLIK 185
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES--------- 465
++ ++ + KL +++D SVI T +L L + KP + +
Sbjct 186 AKV-APEKLMEQLKKLESAMD-SVIETAS-DLVSLSKYGAKPYEVVIICKDFEIGCLGIP 242
Query 466 ---------RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV 516
+ F + D + +R KD ++ R+ G +
Sbjct 243 NFDTVIEIFDETVAFVNTTTEFHPDLDLDPRRPIKDSLKTTRAVFRQLGPWAAWRTAQVW 302
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
+K E +I K+ L LR N A M L+ ++
Sbjct 303 EK-----------ELGKIIKSQVLPDKTLRFLNMA-----KTSMITIKRLLEPEMKKIK- 345
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
+ + + QR + LE+ + + E KLE I+FV
Sbjct 346 -SIEALRPYVPQRVIRLFEILETFNPEFQKERMKLEK-----------AEHLSAIIFVDQ 393
Query 637 RALVDALKNWIEGN----PKLSFLKPGILTGRGKTNQNTGMTL---PAQKCILDAFKASG 689
R + +L + PK F+ P + G N + + Q +L F +
Sbjct 394 RYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRN- 452
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+ N LIATSV +EG+D+ QCNLVI ++ ++ +Q++GR R GS+ +
Sbjct 453 EINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAA 512
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
+ +++ + R +T + + + E+F DSQ +P V +
Sbjct 513 CDSDLKDFQQIEKILLSRHRTVNNPIEDDSDRF----EEFDVDSQMEPYVVEKTGATLKM 568
Query 810 CRKCKALACYTADV 823
+ Y + +
Sbjct 569 STAIALINRYCSKL 582
>sp|A6ZVS0|MPH1_YEAS7 ATP-dependent DNA helicase MPH1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=MPH1 PE=3 SV=1
Length=993
Score = 297 bits (760), Expect = 4e-85, Method: Composition-based stats.
Identities = 119/668 (18%), Positives = 241/668 (36%), Gaps = 104/668 (16%)
Query 198 EDLEDKMETSDIQIFYQ-----EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+DL D + ++ + + + V TN ++ R+YQ +
Sbjct 41 KDLHDNVLPGQKTVYEEIQRDVSFGPTHHELDYDALSFYVYPTN----YEVRDYQYTIVH 96
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
++ +NT+ PTG GKTF++ + L F +K K++F A P+ QQ
Sbjct 97 KSL-FQNTLCAIPTGMGKTFIASTVM---LNYFRWTKKAKIIFTAPTRPLVAQQIKACLG 152
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ + E+I N + TPQ++ N+LK+G + I L+I D
Sbjct 153 ITGIPSDQTAIL--LDKSRKNREEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVI-D 209
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E H + + Y ++ K +++ LTA+ L+ + ++
Sbjct 210 EAHRATGSYAYTNVV------KFIDRFNSSYRLLALTATP--------ASDLEGVQEVVN 255
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
+LD S I E ++ V Y ++ K+E + + + II QL + + ++ +
Sbjct 256 NLDISKIEIRTE--ESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGIAVKPVLQQAIE- 312
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH--LRKYND 550
L + + + + QK +P+ + L L++
Sbjct 313 ---LGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRLKI 369
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENP 609
I + ++ ++ ++ E + + E+ DP +
Sbjct 370 YGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVGHG 429
Query 610 KLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
KL+ + L E + ++ I+F + R + +I+ ++P I G+ +
Sbjct 430 KLQCVRDELMEFFQKRGSDSRVIIFTELRESALEIVKFIDSVANDQ-IRPHIFIGQARAK 488
Query 669 QNTG------------------MTLPAQKCILDAFK------------------------ 686
+ + Q+ L+A +
Sbjct 489 EGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSSEEAQI 548
Query 687 ---------------ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
G++N+L+ TS+ +EG+DI + +L+I Y+ + IK IQ GR
Sbjct 549 SGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRT 608
Query 731 GRARGSKCFLLTSNAGVIEKEQINMY---KEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR R K LL S+ + E+ + +++ + + D + + I + HE
Sbjct 609 GRKRDGKIVLLFSSNESYKFERAMEDYSTLQALISKQCIDYKKSDRIIPEDII--PECHE 666
Query 788 KFIRDSQE 795
I + E
Sbjct 667 TLITINDE 674
>sp|P40562|MPH1_YEAST ATP-dependent DNA helicase MPH1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MPH1
PE=1 SV=1
Length=993
Score = 293 bits (751), Expect = 7e-84, Method: Composition-based stats.
Identities = 118/668 (18%), Positives = 240/668 (36%), Gaps = 104/668 (16%)
Query 198 EDLEDKMETSDIQIFYQ-----EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+DL D + ++ + + + V TN ++ R+YQ +
Sbjct 41 KDLHDNVLPGQKTVYEEIQRDVSFGPTHHELDYDALSFYVYPTN----YEVRDYQYTIVH 96
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
++ +NT+ PTG GKTF++ + L F +K K++F A P+ QQ
Sbjct 97 KSL-FQNTLCAIPTGMGKTFIASTVM---LNYFRWTKKAKIIFTAPTRPLVAQQIKACLG 152
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ + E+I N + TPQ++ N+LK+G + I L+I D
Sbjct 153 ITGIPSDQTAIL--LDKSRKNREEIWANKRVFFATPQVVENDLKRGVLDPKDIVCLVI-D 209
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E H + Y ++ K +++ LTA+ L+ + ++
Sbjct 210 EAHRATGSSAYTNVV------KFIDRFNSSYRLLALTATP--------ASDLEGVQEVVN 255
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
+LD S I E ++ V Y ++ K+E + + + II QL + + ++ +
Sbjct 256 NLDISKIEIRTE--ESMDIVKYMKKRKKEKIEVPLLLEIEDIIEQLGMAVKPVLQQAIE- 312
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH--LRKYND 550
L + + + + QK +P+ + L L++
Sbjct 313 ---LGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRLKI 369
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENP 609
I + ++ ++ ++ E + + E+ DP +
Sbjct 370 YGIRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVGHG 429
Query 610 KLEDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
KL+ + L + + ++ I+F + R + +I+ ++P I G+ +
Sbjct 430 KLQCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFIDSVADDQ-IRPHIFIGQARAK 488
Query 669 QNTG------------------MTLPAQKCILDAFK------------------------ 686
+ + Q+ L+A +
Sbjct 489 EGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRAANDKLERSARRTGSSEEAQI 548
Query 687 ---------------ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
G++N+L+ TS+ +EG+DI + +L+I Y+ + IK IQ GR
Sbjct 549 SGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRT 608
Query 731 GRARGSKCFLLTSNAGVIEKEQINMY---KEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR R K LL S+ + E+ + +++ + + D + + I + HE
Sbjct 609 GRKRDGKIVLLFSSNESYKFERAMEDYSTLQALISKQCIDYKKSDRIIPEDII--PECHE 666
Query 788 KFIRDSQE 795
I + E
Sbjct 667 TLITINDE 674
>sp|A1ZAW0|DCR2_DROME Endoribonuclease Dcr-2 OS=Drosophila melanogaster
OX=7227 GN=Dcr-2 PE=1 SV=1
Length=1722
Score = 289 bits (740), Expect = 2e-80, Method: Composition-based stats.
Identities = 112/582 (19%), Positives = 216/582 (37%), Gaps = 91/582 (16%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG---QKGKVVFFAN 298
KPR YQL L + N I+ PTG GKTFV++L+ + + F + + +F N
Sbjct 7 KPRGYQLRLV-DHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCN 65
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ + QQ + G G ++ N +++ T Q+ ++ + +
Sbjct 66 TVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQ 125
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ LS +++I DECH+ + HP+ M + + LP+V+GLT +
Sbjct 126 TYVA-LSSLSVVIIDECHHGTGHHPFREFMRLFT----IANQTKLPRVVGLTG--VLIKG 178
Query 418 KNTDEALDYICKLCASLDASVIATV-KHNLEELEQVVYKPQKFFRKV------------- 463
+ +L + ++I +E + KP +
Sbjct 179 NEITNVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLI 238
Query 464 -----ESRISDKFKYIIAQLMRDTESL-------AKRICKDLENLSQIQNREFGTQKYEQ 511
+ +S I Q +R ++SL K K L N Q +E+G
Sbjct 239 SAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASI 298
Query 512 WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFF 571
I+++ + F + + E+ K + + AL + E R
Sbjct 299 AIISL---IVEFDIKRRQAETLSVKLM---------HRTALTLCEKIR------------ 334
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY--HLNPETI 629
++ ++ D + + + S PK++ L+ + +
Sbjct 335 -HLLVQKLQDMTYDDDDDNVNTEEVIMNFST------PKVQRFLMSLKVSFADKDPKDIC 387
Query 630 TILFVKTRAL----VDALKNWIEGNPKLSF-LKPGILTGRGKTNQNTG--MTLPAQKCIL 682
++FV+ R L N+I+ P+L L P + GR + + + QK +
Sbjct 388 CLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAI 447
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F+ G+ N++I +SV +EGID+ CN V + + V +Q++GR R +K L T
Sbjct 448 QQFR-DGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFT 506
Query 743 SNA------------GVIEKEQINMYKEKMMNDSILRLQTWD 772
++ + K++++ + L
Sbjct 507 ADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYEIK 548
>sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MPH1 PE=3 SV=1
Length=1052
Score = 283 bits (724), Expect = 8e-80, Method: Composition-based stats.
Identities = 123/633 (19%), Positives = 229/633 (36%), Gaps = 97/633 (15%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
+ S + TN F+ R+YQ ++ + +N + PTG GKTF++
Sbjct 60 GPTHHQLNEELLHSYIYPTN----FEVRDYQFDIVRKGLL-QNILCAIPTGMGKTFIAST 114
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
+ L F + K++F A P+ QQ + + T +N E+
Sbjct 115 VM---LNFFRWTKTAKIIFTAPTRPLVAQQIKACLGITGIPHDQTAILLDKTRKN--REE 169
Query 337 IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG 396
I N + TPQ++ N+LK+G + I L+I DE H + + Y ++ K
Sbjct 170 IWANKRVFFTTPQVVENDLKRGVLNPKDIVCLVI-DEAHRATGSYAYANLV------KFI 222
Query 397 GSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 456
+++ LTA+ ++ + ++ +L+ S I E ++ V Y
Sbjct 223 NRFNSSYRLLALTATPAT--------DIEGVQEVVNNLNISKIEIRTE--ESMDIVKYMK 272
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKR--------------------------IC 490
+K +V + + + + I+ QL + + I
Sbjct 273 KKIKDRVNIQTTVEIENIVEQLGIAILPVLNQAVELGIYESCPPSAINAFKAMQKSQAII 332
Query 491 KDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 550
+ I+ R + + + + K ++ + + F L K +
Sbjct 333 MNPSIPEGIKWRNYFILQLLNHVGQMLKRIKIYGIRTFFSYFQNKVKEFTTKYDLGKSTN 392
Query 551 --ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ---DLTQRFEEKLQELESVSRDPS 605
A H ++ ++ + G ++E +LTQ F E E +
Sbjct 393 KIAAGFYYHPMIQAITKECEEKIKDPNFLGHGKLEHLRDELTQFFYENPFESRVIIFTEL 452
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKT---RALVDALKNWIEGNPK---------- 652
E+ L + + N E +F+ + D +K + PK
Sbjct 453 RES----ALEIVKCIDSMENSEIRPHIFIGQAKGKEGFDEVKFVRKHGPKGRKKSDREKR 508
Query 653 -----------------LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
+ TG + Q +GM QK ++ FK SG +N+L+
Sbjct 509 LEEERRMDEEKKQAALQEKLERTSRRTGSSEEAQLSGMNQKQQKEVIKKFK-SGLYNVLV 567
Query 696 ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQIN 754
TS+ +EG+DI + +L+I Y+ + IK IQ GR GR R + L+ S+ + +Q
Sbjct 568 CTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGRTGRKRDGRIVLMFSSNEASKFDQSM 627
Query 755 MYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
N L Q + ++IL + E
Sbjct 628 ---NDYYNLQKLISQHLVQYRKSDRILPPENQE 657
>sp|Q75AA7|MPH1_EREGS ATP-dependent DNA helicase MPH1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=MPH1 PE=3 SV=2
Length=1077
Score = 281 bits (718), Expect = 8e-79, Method: Composition-based stats.
Identities = 112/625 (18%), Positives = 216/625 (35%), Gaps = 97/625 (16%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
+ + + TN ++ R YQ + A+ +N + PTG GKTF++ +
Sbjct 71 PTHHQLRYENLNTYLYPTN----YEVREYQFNIVHRAL-FENVLCAIPTGMGKTFIASTV 125
Query 278 CEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
L + K++F A P+ QQ + EQI
Sbjct 126 M---LNYYRWTVGTKIIFTAPTRPLVAQQIKACLGITGIPYNDTAIL--LDKSRKHREQI 180
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG 397
+ TPQ++ N+LK+G + + L++ DE H + Y + K
Sbjct 181 WSEKRVFFATPQVVENDLKRGALNPKDVV-LLVIDEAHRARGSYAYVEL------TKFID 233
Query 398 SSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ 457
+V+ LTA+ L+ + ++ +L S I E++ V Y +
Sbjct 234 RFNTSYRVLALTATPAT--------DLEGVQEVVDNLQISKIELRTEESEDI--VRYMKR 283
Query 458 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQ 517
+ +V + + + II QL + K+ L + E + Q
Sbjct 284 RDTEEVIVPLIPEIEDIIEQLGIAITP----VLKEAVQLGLYDDCEPVNINAFIAMQQSQ 339
Query 518 KACMVFQMPDK-DEESRICKALFLYTSHLRKYNDALIIS-EHARMKDALDYLKDFFSNVR 575
K +P+ ++ L + H+ K I + + + +
Sbjct 340 KILANSSIPEGVKWKNYFILQLLCHVGHMLKRLKIYGIQTFYTYFDNKYREFTTKYGIGK 399
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENPKLEDLCFILQEEYHLNPE-TITI-- 631
+ + + + ++ + +PS + KL + L + + + I
Sbjct 400 STNKTAASFYYSSILKNITKTCQAYTANPSFLGHGKLYRVRDELSTFFASAGDDSRVIIF 459
Query 632 -------------------------LFVKT--------------------RALVDALKNW 646
+F+ R VD ++
Sbjct 460 TELRESALELVKCVDNMNDRFIRPHIFIGQAKGKESFDDGEYLRKHAPKGRKKVDRIRRL 519
Query 647 IEG----------NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
E + + TG + Q +GMT QK ++ FK GD+N+L+
Sbjct 520 EEEKRLADEKLRKKEEEKLARTARRTGSSEEAQISGMTQKQQKEVISLFK-KGDYNVLVC 578
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINM 755
TS+ +EG+DI + +++I Y+ + IK IQ GR GR R + LL S+ + EQ
Sbjct 579 TSIGEEGLDIGEVDMIICYDTTSSPIKNIQRMGRTGRKRDGRIVLLLSDNEPRKFEQAME 638
Query 756 ---YKEKMMNDSILRLQTWDEAVFR 777
++++ + L + D + +
Sbjct 639 DYAQLQRLIGEESLNYKVTDRIIPK 663
>sp|Q6CQX2|MPH1_KLULA ATP-dependent DNA helicase MPH1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MPH1 PE=3 SV=2
Length=1002
Score = 275 bits (704), Expect = 2e-77, Method: Composition-based stats.
Identities = 112/652 (17%), Positives = 232/652 (36%), Gaps = 105/652 (16%)
Query 210 QIFYQED------PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIIC 263
Q FY+E + + TN ++ R YQ ++ A+ +N +
Sbjct 66 QTFYEETHTDVSYGPTHHQLNEENLDEYIYPTN----YEVRQYQYDIVRCAL-FENVLCA 120
Query 264 APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
PTG GKTF++ + L + + K++F A P+ QQ
Sbjct 121 IPTGTGKTFIASTVM---LNYYRWTKSSKIIFTAPTRPLVAQQIKACLGITGIPYSDTAI 177
Query 324 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 383
+ E+I + + TPQ++ N+LK+G + + L++ DE H + Y
Sbjct 178 L--LDKSRKNREEIWQQKRVFFTTPQVVENDLKRGVLNPKDVV-LLVIDEAHRARGNYAY 234
Query 384 NMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVK 443
+ K +++ LTA+ L+ + ++ +L S I
Sbjct 235 VEL------TKFIDRFNTSYRLLALTATPAA--------DLEGVQEVVNNLHISKIELRT 280
Query 444 HNLEELEQVVYKPQKFFRKVE-----SRISDKFKYIIAQLMRDTESL------------- 485
+ ++ + + + + ++ + ++ IA ++++ L
Sbjct 281 EDSLDVARYMMRRDREMIEIGLIPEIEEVVEQIGIAIAPVLQEAIQLGIYESCEPHQINA 340
Query 486 ------AKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD------------ 527
+++I + ++ + F + + + + ++ +
Sbjct 341 FVAMQQSQKIILNPSIPEGLKWKNFFILQLLSQVGHMYRRLRIYGLRAFYNYFQNKYTEF 400
Query 528 -----KDEESRICKALFLYTSHLRKYNDALI-------ISEHARMKDALDYLKDFFSNVR 575
+ + A F Y+ L+ D H +++ + L DFF+
Sbjct 401 TTKYSMKKSTNKTAANFFYSPILKTVIDKCKRRLEEPEFYSHEKLEYLNNELADFFTMAP 460
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL-----EDLCFILQEEYHLNPETIT 630
+ I +L + E ++ ++ + + P + + +E Y +
Sbjct 461 SDSRAIIFTELRESALEIVKSIDIL--NDGALRPHIFIGQAKGKEHFDEETYIRKNKPKG 518
Query 631 ILFVKTRALVDALKNWI----------EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
R L+ + + G TG + Q +GM QK
Sbjct 519 ------RTKAARLRRIEEENRVEEEKKRQKEQAKLERTGRRTGSSEEAQLSGMNQKQQKK 572
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCF 739
++ FK G +N+L+ TS+ +EG+DI + +L+I ++ + IK IQ GR GR R +
Sbjct 573 VISDFK-KGIYNVLVCTSIGEEGLDIGEVDLIICFDSTSSPIKNIQRMGRTGRKRDGRIV 631
Query 740 LLTSNAGVIEKEQ-INMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI 790
LL S + EQ +N Y+ + L+ + + EKFI
Sbjct 632 LLFSGNEKFKFEQAMNDYENLQTAITHNALEYTKSDRILPPNVQPKCEEKFI 683
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster
OX=7227 GN=Dcr-1 PE=1 SV=1
Length=2249
Score = 163 bits (413), Expect = 1e-39, Method: Composition-based stats.
Identities = 98/619 (16%), Positives = 203/619 (33%), Gaps = 119/619 (19%)
Query 234 DTNLYSP-FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
D NL++ F PR++Q+EL A +NTIIC K F++ L L + +
Sbjct 7 DNNLHTTVFTPRDFQVELLATA-YERNTIICLGHRSSKEFIA-LKLLQELSRRARRHGRV 64
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
V+ + ++ + S+++ RV +P + + + IL P+ +
Sbjct 65 SVYLSCEVGTSTEPCSIYTMLTHLTDLRVWQEQPDM--QIPFDHCWTDYHVSILRPEGFL 122
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
L+ + LS L++ ++CH Y I + + + P+++GL A
Sbjct 123 YLLETRELL-LSSVELIVLEDCH---DSAVYQRIRPLFENHIMPAPPADRPRILGL-AGP 177
Query 413 GVGDAKNTDE--------------------ALDYICKLCASLDASVIATVKHNLEELEQV 452
+ + + + C+ ++ ++EL V
Sbjct 178 LHSAGCELQQLSAMLATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDELSLV 237
Query 453 VYKP---------QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI---- 499
+ + E +D+F + + I L L ++
Sbjct 238 LADVLNTHKSFLLDHRYDPYEIYGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEMGPWC 297
Query 500 --QNREFGTQKYEQWIVTV--QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALII- 554
+ Q E+ V ++ +++ + + HL +D+
Sbjct 298 TQRAAHHFYQCNEKLKVKTPHERHYLLYCLVSTALIQLYSLCEHAFHRHLGSGSDSRQTI 357
Query 555 --SEHARMKDALDYLKDFFSNVRAAGFDEIEQ-----------DLTQRFEEKLQELESVS 601
+++ L L+ F D + + L+ E K + ++ +
Sbjct 358 ERYSSPKVRRLLQTLRCFKPEEVHTQADGLRRMRHQVDQADFNRLSHTLESKCRMVDQMD 417
Query 602 RDPSNENPKLEDLCFILQEE---------------------------------------- 621
+ P+ + L IL
Sbjct 418 QPPTETRALVATLEQILHTTEDRQTNRSAARVTPTPTPAHAKPKPSSGANTAQPRTRRRV 477
Query 622 --------YHLNPETIT-ILFVKTRALVDALKNWI----EGNPKLSFLKPGILTGR---- 664
++ +T+ +++ L + +P L FL+ T R
Sbjct 478 YTRRHHRDHNDGSDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADP 537
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ + Q+ +L F+ D N+LI TSV +EGID+ +CNLV+ ++
Sbjct 538 TTEPKEAELEHRRQEEVLKRFRMH-DCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSY 596
Query 725 IQTRGRGRARGSKCFLLTS 743
+Q +GR RA + +L +
Sbjct 597 VQCKGRARAAPAYHVILVA 615
>sp|G0SFM2|DBP2_CHATD ATP-dependent RNA helicase DBP2 OS=Chaetomium
thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)
OX=759272 GN=DBP2 PE=3 SV=2
Length=556
Score = 124 bits (311), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 81/202 (40%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ + DF ++ ++ R + ++ + E+ K + L L++
Sbjct 319 KEVRNLAADFLTDFIQVNIGSLDLAANHRITQIVEVIS--------ESEKRDRLIKHLEK 370
Query 621 EY-HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ + ++FV T+ + D + ++ + G + + +
Sbjct 371 IMDSRDTQNKCLIFVGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERD 418
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGS 736
+LD FK +G I++AT VA GID+ VI Y+Y N I I GR A+G+
Sbjct 419 WVLDQFK-TGKSPIMVATDVASRGIDVRNITHVINYDYPNNSEDYIHRIGRTGRAGAKGT 477
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
T+ ++ +++ +E
Sbjct 478 AITFFTTENAKQARDLVSVLQE 499
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 52/124 (42%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 163 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 222
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+K+ + R T I G + + + ++ I TP L++ L+ G +L T ++
Sbjct 223 NKFGKSSRIRNTCIYGGVPKGPQIRDLQRGVEVCIATPGRLIDMLESGK-TNLRRVTYLV 281
Query 371 FDEC 374
DE
Sbjct 282 LDEA 285
>sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C
OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0599500 PE=3
SV=1
Length=623
Score = 123 bits (308), Expect = 9e-28, Method: Composition-based stats.
Identities = 52/288 (18%), Positives = 107/288 (37%), Gaps = 27/288 (9%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
I Q +RD E + L + R + + ++ + + +A + M + + RI
Sbjct 275 INQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRY-LALDEADRMLDMGFEPQVRRI 333
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ + + R+ + A D+L+++ + + QR E
Sbjct 334 VEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYI-FLAVGRVGSSTDLIVQRVEF-- 390
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
+++ L DL ++ T+T++FV+T+ D+L++W+
Sbjct 391 -------VQEADKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWL------- 436
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
+ G T+ + ++ L +FK SG IL+AT VA G+DI V+
Sbjct 437 -----CMNGFPATSIHGDRNQQEREYALRSFK-SGHTPILVATDVAARGLDIPHVAHVVN 490
Query 715 YEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
++ + + I GR G N + + + +E
Sbjct 491 FDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQES 538
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 20/185 (11%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
E + E Q L++N + P + Y + + ++ G++
Sbjct 144 ETSGREVPPPVGTFAEIDLGQALNDN------IRRCKYVRPTPVQRYAIPI---SLAGRD 194
Query 260 TIICAPTGCGKTF-----VSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSV 309
+ CA TG GKT + I + PQ + + + + Q
Sbjct 195 LMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALILSPTRELSMQIHEE 254
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
K+ + G RV G N + + DI++ TP LV+ L++ + SL +
Sbjct 255 ARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARV-SLQSIRYL 313
Query 370 IFDEC 374
DE
Sbjct 314 ALDEA 318
>sp|O13370|DED1_SCHPO ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=ded1
PE=1 SV=1
Length=636
Score = 123 bits (308), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 119/315 (38%), Gaps = 39/315 (12%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
EE + Y+ + R + I Q+ + + L+ L +L
Sbjct 273 EESRKFCYR--SWVRPCAVYGGADIRAQIRQIDQGCDLLSAT-PGRLVDLIDRGRISLAN 329
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
K+ + + +A + M + + I + + + R+ A D+
Sbjct 330 IKF----LVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDF 385
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
LKD+ + +++TQ K+ +E + K L IL + L P
Sbjct 386 LKDYV-FLSVGRVGSTSENITQ----KVVHVED--------SEKRSYLLDIL---HTLPP 429
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
E +T++FV+T+ + D L +++ + T+ + T ++ L+ F+
Sbjct 430 EGLTLIFVETKRMADTLTDYLLN------------SNFPATSIHGDRTQRERERALELFR 477
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
SG +I++AT+VA G+DI VI Y+ + + I GR G
Sbjct 478 -SGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNR 536
Query 744 NAGVIEKEQINMYKE 758
N I KE I + +E
Sbjct 537 NNKGIAKELIELLQE 551
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 67/202 (33%), Gaps = 33/202 (16%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +V D+E E + + +L +N T + Q
Sbjct 154 DDIPVEVSGGDIEPVNEFTSPPL-------NSHLLQNIKLSGYTQPTPV---------QK 197
Query 249 ELALPAMKGKNTIICAPTGCGKTF-----V---------SLLICEHH--LKKFPQGQKGK 292
G++ + CA TG GKT + + + + + P+
Sbjct 198 NSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPT 257
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q K+ R R + G + QI + D++ TP LV
Sbjct 258 TLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLV 317
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ + +G I SL+ ++ DE
Sbjct 318 DLIDRGRI-SLANIKFLVLDEA 338
>sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis
thaliana OX=3702 GN=RH37 PE=2 SV=2
Length=633
Score = 121 bits (303), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/290 (19%), Positives = 109/290 (38%), Gaps = 27/290 (9%)
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
I Q +R+ E + L+ + R + + ++ + + +A + M + +
Sbjct 274 GTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRF-LALDEADRMLDMGFEPQI 332
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
+I + + + +R+ + A D+L ++ + + QR E
Sbjct 333 RKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYI-FLAVGRVGSSTDLIVQRVE 391
Query 592 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 651
L S++ L DL +E + +T++FV+T+ D+L+NW+
Sbjct 392 FVLD---------SDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWL---- 438
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
+ G T+ + T ++ L AFK SG IL+AT VA G+DI
Sbjct 439 --------CINGFPATSIHGDRTQQEREVALKAFK-SGRTPILVATDVAARGLDIPHVAH 489
Query 712 VILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
V+ ++ + + I GR G + + + +E
Sbjct 490 VVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQE 539
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/216 (19%), Positives = 78/216 (36%), Gaps = 34/216 (16%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------- 241
++ ++V + +D + F ++D N P E S N+ P
Sbjct 109 DRREREVNPFENDD---SEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEID 165
Query 242 ---------------KPRNYQLELALPAMKGKNTIICAPTGCGKTF-----VSLLICEHH 281
KP Q ++G++ + CA TG GKT + I +
Sbjct 166 LGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQ 225
Query 282 LKKFPQGQK---GKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
+ P+G + V + + Q K+ + G +V G T N + ++
Sbjct 226 HVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELE 285
Query 339 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
DI++ TP L + L++ + S+ + + DE
Sbjct 286 RGVDILVATPGRLNDLLERARV-SMQMIRFLALDEA 320
>sp|Q40469|IF4A6_TOBAC Eukaryotic initiation factor 4A-6 (Fragment)
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=253
Score = 114 bits (286), Expect = 4e-27, Method: Composition-based stats.
Identities = 43/187 (23%), Positives = 74/187 (40%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 70 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 125
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + G + + M + I+ F+ SG
Sbjct 126 FVNTRRKVDWLTDKMRGR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 172
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 173 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERML 232
Query 750 KEQINMY 756
+ Y
Sbjct 233 FDIQKFY 239
>sp|Q9CAI7|IF4A3_ARATH Eukaryotic initiation factor 4A-3 OS=Arabidopsis
thaliana OX=3702 GN=TIF4A-3 PE=1 SV=1
Length=414
Score = 117 bits (294), Expect = 7e-27, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 230 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 285
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 286 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 332
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI ++ N + I GR +G +TS +
Sbjct 333 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMM 392
Query 750 KEQINMY 756
+ Y
Sbjct 393 ADIQRFY 399
Score = 50.9 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/183 (17%), Positives = 64/183 (35%), Gaps = 5/183 (3%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+ +T+ E + + D C + P + Y KP Q +
Sbjct 14 RQFDTKMNAILGEEGEETFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGII 73
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFS 311
P KG + I A +G GKT C L++ + + + A + +Q + V
Sbjct 74 PFCKGLDVIQQAQSGTGKT---ATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMR 130
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G + G T+ + +++ TP + + L++ ++ + +
Sbjct 131 ALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSL-RADAIKMFVL 189
Query 372 DEC 374
DE
Sbjct 190 DEA 192
>sp|P41381|IF4A8_TOBAC Eukaryotic initiation factor 4A-8 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 117 bits (293), Expect = 9e-27, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 229 DITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRTR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T++ +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 FDIQKFY 398
Score = 53.2 bits (126), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/140 (21%), Positives = 54/140 (39%), Gaps = 5/140 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVV 294
Y KP Q +P KG + I A +G GKT C L++ G + + +
Sbjct 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGILQQLDYGLVQCQAL 112
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
A + +Q + V + G +V G T+ + +I+ TP + +
Sbjct 113 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILAAGVHVIVGTPGRVFDM 172
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L++ ++ + + DE
Sbjct 173 LRRQSL-RPDYLRMFVLDEA 191
>sp|Q40471|IF4A9_TOBAC Eukaryotic initiation factor 4A-9 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 117 bits (292), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/187 (23%), Positives = 74/187 (40%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +TS+ +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 SDIQRFY 398
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/139 (19%), Positives = 50/139 (36%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +P KG + I A +G GKT L + + +
Sbjct 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY--ELLDCQALV 113
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G +V G T+ + +++ TP + + L
Sbjct 114 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML 173
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ + + DE
Sbjct 174 RRQSL-RPDHIKMFVLDEA 191
>sp|Q6Z4K6|RH52B_ORYSJ DEAD-box ATP-dependent RNA helicase 52B
OS=Oryza sativa subsp. japonica OX=39947 GN=PL10B PE=2 SV=1
Length=638
Score = 120 bits (300), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/292 (20%), Positives = 105/292 (36%), Gaps = 31/292 (11%)
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
+ +L R E L L +L + KY + + +A + M +
Sbjct 286 PITQQLRELERGVEILVAT-PGRLMDLLERARVSLQMIKY----LALDEADRMLDMGFEP 340
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
+ +I + + + R+ + A D+L D+ + + QR
Sbjct 341 QIRKIVEQMDMPPRGERQTMLFSATFPKEIQRMASDFLADYI-FLAVGRVGSSTDLIVQR 399
Query 590 FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG 649
E L +++ L DL + + +T++FV+T+ DAL+NW+
Sbjct 400 VEFVLD---------ADKRSYLMDLLHAQRANGTHGKQALTLVFVETKRGADALENWLYN 450
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
N G T+ + T ++ L +FK SG IL+AT VA G+DI
Sbjct 451 N------------GFPATSIHGDRTQQEREYALRSFK-SGATPILVATDVAARGLDIPHV 497
Query 710 NLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
VI ++ + + I GR G + + + + +E
Sbjct 498 AHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQE 549
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/148 (17%), Positives = 57/148 (39%), Gaps = 12/148 (8%)
Query 235 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKG 291
P + Y + + ++ G++ + CA TG GKT + + P+ +
Sbjct 187 CKYVKPTPVQRYAIPI---SIAGRDLMACAQTGSGKTAAFCFPIISGIMRSRPPPRSRGS 243
Query 292 KVVF-----FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIIL 346
+ + + + Q K+ + G +V G + ++ +I++
Sbjct 244 RTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPITQQLRELERGVEILVA 303
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDEC 374
TP L++ L++ + SL + + DE
Sbjct 304 TPGRLMDLLERARV-SLQMIKYLALDEA 330
>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP2 PE=3 SV=2
Length=554
Score = 119 bits (297), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF + +E R + ++ + E K + + +++
Sbjct 326 KEVRALASDFLQDFIQVNIGSMELAANHRITQIVEVV--------TEMEKRDRMIKHMEK 377
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N E ++FV T+ + D + ++ + G + + +
Sbjct 378 VME-NKENKILIFVGTKRVADEITRFLRQD------------GWPALSIHGDKQQNERDW 424
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+LD FK +G I++AT VA GID+ V+ Y+Y N I I GR A G+
Sbjct 425 VLDQFK-TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTA 483
Query 738 CFLLTSNAGVIEKEQINMYKE 758
L T++ ++ +N+ +E
Sbjct 484 ITLFTTDNQKQARDLVNVLQE 504
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 170 ALSGRDVVGIAETGSGKTLTYCLPSIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQEEM 229
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
K+ R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 230 KKFGRSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGK-TNLRRVTYLV 288
Query 371 FDEC 374
DE
Sbjct 289 LDEA 292
>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP2 PE=3 SV=1
Length=562
Score = 119 bits (297), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + NE+ K + + L++
Sbjct 326 KEVRALASDFLTDFIQVNIGSMDLAANHRITQVVEVV--------NESEKRDKMIKHLEK 377
Query 621 EYHL-NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ ++F T+ + D + ++ + G + + +
Sbjct 378 IMEDKESQNKILIFTGTKRVADEITRFLRQD------------GWPALSIHGDKQQNERD 425
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGS 736
+LD FK +G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 426 WVLDQFK-TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGT 484
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
T++ ++ + + +E
Sbjct 485 AITFFTTDNSKQARDLVGVLQE 506
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 170 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQQEI 229
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+K+ + R T + G + + ++ I TP L++ L+ G +L T ++
Sbjct 230 TKFGKSSRIRNTCVYGGVPKGPQTRDLSRGVEVCIATPGRLIDMLESGR-TNLRRVTYLV 288
Query 371 FDEC 374
DE
Sbjct 289 LDEA 292
>sp|Q40468|IF415_TOBAC Eukaryotic initiation factor 4A-15 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 116 bits (290), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI ++ N + I GR +G +T + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 SDIQRFY 398
Score = 55.9 bits (133), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 54/140 (39%), Gaps = 5/140 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVV 294
Y KP Q +P KG + I A +G GKT C L++ + + +
Sbjct 56 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGILQQLAYELLECQAL 112
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
A + +Q + V + G +VT G T+ + +++ TP + +
Sbjct 113 VLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRVFDM 172
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L++ ++ + + DE
Sbjct 173 LRRQSL-RPDHIKMFVLDEA 191
>sp|Q75HJ0|RH37_ORYSJ DEAD-box ATP-dependent RNA helicase 37 OS=Oryza
sativa subsp. japonica OX=39947 GN=PL10A PE=2 SV=1
Length=637
Score = 118 bits (296), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/287 (19%), Positives = 109/287 (38%), Gaps = 27/287 (9%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
I Q +R+ E + + L + R + + ++ + + +A + M + + +I
Sbjct 292 IHQQLRELERGVEILVATPGRLMDLLERARVSLQMVKY-LALDEADRMLDMGFEPQIRKI 350
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ + + +R+ + A D+L D+ + + QR E L
Sbjct 351 VEQMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYI-FLAVGRVGSSTDLIAQRVEFVL 409
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
+ +++ L DL + + +T++FV+T+ DAL+NW+ N
Sbjct 410 E---------ADKRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADALENWLYTN---- 456
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
G T+ + T ++ L +FK SG IL+AT VA G+DI VI
Sbjct 457 --------GFPATSIHGDRTQQEREYALRSFK-SGATPILVATDVAARGLDIPHVAHVIN 507
Query 715 YEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
++ + + I GR G + + + +E
Sbjct 508 FDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQE 554
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 41/222 (18%), Positives = 75/222 (34%), Gaps = 18/222 (8%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
R D+E P A E F GI ED+ + D+ P
Sbjct 124 RRDREPNPFANSEAEEATEVDFD---TANTGINFDAYEDIPVETSGHDVP------PPVN 174
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+E + + KP Q ++ G++ + CA TG GKT
Sbjct 175 TFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAAFCFPIIS 234
Query 281 HLKKFPQGQKGK--------VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+ Q+ + + + + Q K+ + G RV G +
Sbjct 235 GIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVRVVVAYGGAPIHQ 294
Query 333 PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ +I++ TP L++ L++ + SL + + DE
Sbjct 295 QLRELERGVEILVATPGRLMDLLERARV-SLQMVKYLALDEA 335
>sp|P41382|IF410_TOBAC Eukaryotic initiation factor 4A-10 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 116 bits (289), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R + L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 SDIQKFY 398
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/177 (17%), Positives = 63/177 (36%), Gaps = 5/177 (3%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D + + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
+ I A +G GKT C L++ + + + A + +Q + V +
Sbjct 79 DVIQQAQSGTGKT---ATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 191
>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp2 PE=3 SV=1
Length=572
Score = 117 bits (294), Expect = 4e-26, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ D+ ++ +E R + ++ + + K+ + E
Sbjct 339 KEVRALASDYLNDFIQVNIGSLELSANHRITQIVEVVSEF-----EKRDKMTKHLEKIME 393
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ + ++F T+ + D + ++ + G + + +
Sbjct 394 ----DKDNKILIFTGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERDW 437
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V Y+Y N I I GR +G+
Sbjct 438 VLNEFK-TGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTA 496
Query 738 CFLLTSNAGVIEKEQINMYKE 758
L T++ ++ +N+ E
Sbjct 497 ITLFTTDNQKQARDLVNVLTE 517
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/215 (20%), Positives = 79/215 (37%), Gaps = 11/215 (5%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K+NW EK + + + ED+ +I + P+
Sbjct 98 KQNWDLNTLPKFEKS------FYKEDPVVAARSEEDVAKFRAQHNIAVQGPNIPKPVETF 151
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P+ V F P Q + A+ G++ + A TG GKT L H+
Sbjct 152 DEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI 211
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + +K+ + R T + G + + + +
Sbjct 212 NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAK 271
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ I TP L++ ++ G +L T ++ DE
Sbjct 272 GVEVCIATPGRLIDMIESGK-TNLRRVTYLVLDEA 305
>sp|Q9M2F9|RH52_ARATH DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis
thaliana OX=3702 GN=RH52 PE=1 SV=1
Length=646
Score = 118 bits (295), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/157 (24%), Positives = 69/157 (44%), Gaps = 16/157 (10%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
S++ L DL +E + + +T++FV+T+ D+L+NW+ + G
Sbjct 383 SDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWL------------CINGF 430
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
T + + ++ L +FK +G IL+AT VA G+DI V+ ++ ++
Sbjct 431 PATTIHGDRSQQEREVALRSFK-TGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
Query 725 IQTRGR-GRARGS--KCFLLTSNAGVIEKEQINMYKE 758
+ GR GRA S N + K + +E
Sbjct 490 VHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQE 526
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 19/180 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTII 262
Y++ P + P + ++ +L KP Q G++ +
Sbjct 129 YEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMA 188
Query 263 CAPTGCGKTF-----VSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFSKYF 314
CA TG GKT + I + + P+G +G V + + Q K+
Sbjct 189 CAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS 248
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G +V G T N + ++ DI++ TP L + L++G + SL + + DE
Sbjct 249 YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRV-SLQMVRFLALDEA 307
>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp2 PE=3 SV=2
Length=514
Score = 117 bits (292), Expect = 5e-26, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 74/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ D+ + +E R + ++ + + K+ + E
Sbjct 292 KEVRALASDYLNEFIQVNIGSLELSANHRITQIVEVVSEF-----EKRDKMTKHLEKIME 346
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ + ++F T+ + D + ++ + G + + +
Sbjct 347 ----DKDNKILIFTGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERDW 390
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V Y+Y N I I GR +G+
Sbjct 391 VLNEFK-TGKSPIMVATDVASRGIDVRNITHVFNYDYPNNSEDYIHRIGRTGRAGQKGTA 449
Query 738 CFLLTSNAGVIEKEQINMYKE 758
L T++ ++ +N+ E
Sbjct 450 ITLFTTDNQKQARDLVNVLTE 470
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/215 (20%), Positives = 80/215 (37%), Gaps = 11/215 (5%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K+NW + EK + + + ED+ +I + P+
Sbjct 51 KQNWDLSTMPKFEKS------FYKEDPVVAARSEEDVAKFRAQHNIAVQGPNIPKPVETF 104
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P+ V F P Q + A+ G++ + A TG GKT L H+
Sbjct 105 DEAGFPAYVMTEVKAQGFPAPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI 164
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + +K+ + R T + G + + + +
Sbjct 165 NAQPLLAPGDGPIVLVLAPTRELAVQIQQEITKFGKSSRIRNTCVYGGVPKGGQIRDLAK 224
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ I TP L++ ++ G +L T ++ DE
Sbjct 225 GVEVCIATPGRLIDMIESGK-TNLRRVTYLVLDEA 258
>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp2 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-1 PE=3 SV=2
Length=562
Score = 117 bits (293), Expect = 5e-26, Method: Composition-based stats.
Identities = 37/202 (18%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ + DF ++ ++ R + ++ + E+ K + + L++
Sbjct 322 KEVRNLAADFLTDFIQVNIGSMDLAANHRITQIVEVVS--------ESEKRDRMIKHLEK 373
Query 621 EYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ ++F T+ + D + ++ + G + + +
Sbjct 374 IMEGRENQNKILIFTGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERD 421
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGS 736
+LD FK +G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 422 WVLDQFK-TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGT 480
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
T++ +E + + +E
Sbjct 481 AITFFTTDNSKQARELVGVLQE 502
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/215 (21%), Positives = 81/215 (38%), Gaps = 11/215 (5%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K+NW + EK + + E + + +++ I +F P+
Sbjct 81 KQNWDMSALPKFEK--SFYQE----HPSVANRSPAEVDKFRADHSIAVFGNNVPKPVETF 134
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P V D F P Q + A+ G++ + A TG GKT L H+
Sbjct 135 DEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHI 194
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + SK+ + R T + G + + +
Sbjct 195 NAQPLLAPGDGPIVLILAPTRELAVQIQQEISKFGKSSRIRNTCVYGGVPKGPQIRDLSR 254
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ I TP L++ L+ G +L T ++ DE
Sbjct 255 GVEVCIATPGRLIDMLESGK-TNLRRVTYLVLDEA 288
>sp|P41376|IF4A1_ARATH Eukaryotic initiation factor 4A-1 OS=Arabidopsis
thaliana OX=3702 GN=EIF4A1 PE=1 SV=1
Length=412
Score = 115 bits (287), Expect = 6e-26, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 72/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 228 EITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLC----DLYETLAITQSVI 283
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 284 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 330
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI ++ N + I GR +G +T + +
Sbjct 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390
Query 750 KEQINMY 756
+ Y
Sbjct 391 FDIQKFY 397
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 3/168 (2%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPT 266
+ F D ++ + + Y KP Q +P KG + I A +
Sbjct 26 GQDEFFTSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 85
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT L + + A + +Q + V + G +V G
Sbjct 86 GTGKTATFCSGVLQQLDFSLIQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 143
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
T+ + +++ TP + + LK+ ++ + + DE
Sbjct 144 GTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSL-RADNIKMFVLDEA 190
>sp|A4QSS5|DBP2_PYRO7 ATP-dependent RNA helicase DBP2 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP2 PE=3 SV=1
Length=548
Score = 117 bits (292), Expect = 6e-26, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ + DF + ++ R + ++ + E+ K + + +++
Sbjct 315 KEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVS--------ESEKRDRMIRHMEK 366
Query 621 EYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ + ++FV T+ + D + ++ + G + + +
Sbjct 367 VMDGKDSKNKILIFVGTKRVADEITRFLRQD------------GWPALSIHGDKQQNERD 414
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGS 736
+LD FK +G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 415 WVLDQFK-TGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGT 473
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
T+ ++ + + +E
Sbjct 474 AITFFTTENSKQARDLLGVLQE 495
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 53/124 (43%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G++ + A TG GKT L H+ P G V+ A + Q ++
Sbjct 159 ALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEI 218
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
SK+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 219 SKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGK-TNLRRVTYLV 277
Query 371 FDEC 374
DE
Sbjct 278 LDEA 281
>sp|P41377|IF4A2_ARATH Eukaryotic initiation factor 4A-2 OS=Arabidopsis
thaliana OX=3702 GN=TIF4A-2 PE=1 SV=1
Length=412
Score = 114 bits (286), Expect = 7e-26, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R E L+ ++ + E+ KLE LC + Y T +++
Sbjct 228 EITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLC----DLYETLAITQSVI 283
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 284 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 330
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI ++ N + I GR +G +T + +
Sbjct 331 VLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRML 390
Query 750 KEQINMY 756
+ Y
Sbjct 391 FDIQKFY 397
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 53/140 (38%), Gaps = 5/140 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVV 294
Y KP Q +P KG + I A +G GKT C L++ + + +
Sbjct 55 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGVLQQLDYALLQCQAL 111
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
A + +Q + V + G +V G T+ + +++ TP + +
Sbjct 112 VLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDM 171
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L++ ++ + + DE
Sbjct 172 LRRQSL-RPDCIKMFVLDEA 190
>sp|Q40467|IF414_TOBAC Eukaryotic initiation factor 4A-14 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 114 bits (286), Expect = 7e-26, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 72/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R + L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 FDIQKFY 398
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/177 (17%), Positives = 63/177 (36%), Gaps = 5/177 (3%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D + + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
+ I A +G GKT C L++ + + + A + +Q + V +
Sbjct 79 DVIQQAQSGTGKT---ATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 191
>sp|Q8LA13|RH11_ARATH DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis
thaliana OX=3702 GN=RH11 PE=1 SV=1
Length=612
Score = 117 bits (293), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/290 (18%), Positives = 110/290 (38%), Gaps = 29/290 (10%)
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
I Q +R+ E + L+ + R + + ++ + + +A + M + +
Sbjct 266 GTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRF-LALDEADRMLDMGFEPQI 324
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
+I + + + +R+ + A D++ ++ + +TQR E
Sbjct 325 RKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYI-FLAVGRVGSSTDLITQRVE 383
Query 592 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 651
S++ L DL +E + +++T++FV+T+ D L+NW+
Sbjct 384 F---------VQESDKRSHLMDLLHAQRE--TQDKQSLTLVFVETKRGADTLENWL---- 428
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
+ T+ + T ++ L +FK +G IL+AT VA G+DI
Sbjct 429 --------CMNEFPATSIHGDRTQQEREVALRSFK-TGRTPILVATDVAARGLDIPHVAH 479
Query 712 VILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
V+ ++ + + I GR G N + + + +E
Sbjct 480 VVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQE 529
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 68/180 (38%), Gaps = 19/180 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTII 262
Y++ P + + P + +D +L +P Q + ++ +
Sbjct 134 YEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
Query 263 CAPTGCGKTF-----VSLLICEHHLKKFPQGQKGK---VVFFANQIPVYEQQKSVFSKYF 314
CA TG GKT + I + + P+G + V + + Q K+
Sbjct 194 CAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS 253
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G +V G T + + ++ DI++ TP L + L++ + S+ + + DE
Sbjct 254 YQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARV-SMQMIRFLALDEA 312
>sp|Q40470|IF4A7_TOBAC Eukaryotic initiation factor 4A-7 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 114 bits (286), Expect = 8e-26, Method: Composition-based stats.
Identities = 40/187 (21%), Positives = 72/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R + L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRTR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G + + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 SDIQRFY 398
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/177 (17%), Positives = 63/177 (36%), Gaps = 5/177 (3%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D + + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
+ I A +G GKT C L++ + + + A + +Q + V +
Sbjct 79 DVIQQAQSGTGKT---ATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 191
>sp|Q41741|IF4A_MAIZE Eukaryotic initiation factor 4A OS=Zea mays
OX=4577 PE=2 SV=1
Length=410
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/179 (23%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E+ KL+ LC + Y T +++
Sbjct 226 EITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLC----DLYETLAITQSVI 281
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 282 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 328
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVI 748
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + I
Sbjct 329 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERI 387
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/201 (19%), Positives = 76/201 (38%), Gaps = 17/201 (8%)
Query 175 LEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSD 234
L E ++F + +K ++++ TED F D C++ + +
Sbjct 4 LAPEGSQFDDK-QYDKKMQEILTEDF-----------FTSYDDVCESFDSMGLQENLLRG 51
Query 235 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKV 293
Y KP Q +P KG + I A +G GKT C L++ G + +
Sbjct 52 IYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT---ATFCSGILQQLDYGLVECQA 108
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ A + +Q + V + G +V G T+ + +++ TP + +
Sbjct 109 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFD 168
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
L++ ++ + + DE
Sbjct 169 MLRRQSL-RPDNIKMFVLDEA 188
>sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1
Length=414
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E+ KL+ LC + Y T +++
Sbjct 230 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLC----DLYETLAITQSVI 285
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 286 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 332
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVI 748
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 333 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 391
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 6/178 (3%)
Query 199 DLEDKMETSDIQIFYQEDPEC-QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKG 257
+++ + D + F+ E ++ + + + Y KP Q +P KG
Sbjct 19 KMQELLHQGDNEEFFTSYDEVFESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG 78
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFER 316
+ I A +G GKT C L++ G + + + A + +Q + V +
Sbjct 79 LDVIQQAQSGTGKT---ATFCSGILQQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDY 135
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 LGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 192
>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp2 PE=3 SV=2
Length=547
Score = 116 bits (289), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 74/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + K + + L++
Sbjct 311 KEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDF--------EKRDKMIKHLEK 362
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N ++F T+ + D + ++ + G + + +
Sbjct 363 IME-NRSNKCLIFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 409
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 410 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTA 468
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T+ ++ + + E
Sbjct 469 ITFFTTENSKQARDLVTILTE 489
Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/160 (23%), Positives = 64/160 (40%), Gaps = 4/160 (3%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
+N E P +S+ +P Q + A+ G++ + A TG GKT L
Sbjct 119 PVENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 178
Query 278 CEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
H+ P G V+ A + Q ++ SK+ + R T + G + +
Sbjct 179 AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQI 238
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ I TP L++ L+ G +L T ++ DE
Sbjct 239 RDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVTYLVLDEA 277
>sp|Q6CX73|FAL1_KLULA ATP-dependent RNA helicase FAL1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=FAL1 PE=3 SV=1
Length=398
Score = 113 bits (283), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 110/324 (34%), Gaps = 34/324 (10%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIA------QLMRDTESLAKRICKDLENLSQI 499
+EL+ +V P + + + + + K++ K+ + +S
Sbjct 89 SKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGT 148
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
R K + V K ++ DE + + + L +
Sbjct 149 PGRVLDMIKRQVLNVRNCKILVL------DEADELLGETLGFKQQIYDIFTKLPP--TIQ 200
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ + + + + L +R E L ++ D E K + LC
Sbjct 201 VVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLC---- 256
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ Y T ++F TR VD L + T ++ + M +
Sbjct 257 DLYDSLTITQCVIFCNTRKKVDWLSRKLTQ------------TNFSVSSMHGDMKQEERD 304
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGS 736
+++ F+ SG +LI+T V GID+ Q +LVI Y+ N I I GR +G
Sbjct 305 QVMNDFR-SGKARVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGV 363
Query 737 KCFLLTSNAGVIEKEQINMYKEKM 760
+T KE + Y+ K+
Sbjct 364 AINFITKEERPKLKEIESHYRIKI 387
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/118 (17%), Positives = 50/118 (42%), Gaps = 3/118 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
GK+ I A +G GKT + + ++ + + + + Q +SV S +
Sbjct 60 GKDVIAQAQSGTGKT--ATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDY 117
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+G A ++++ +N ++ TP +++ +K+ + + +++ DE
Sbjct 118 LNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLN-VRNCKILVLDEA 174
>sp|P35683|IF4A1_ORYSJ Eukaryotic initiation factor 4A-1 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2
Length=414
Score = 114 bits (284), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/179 (23%), Positives = 72/179 (40%), Gaps = 20/179 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KL+ LC + Y T +++
Sbjct 230 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLC----DLYETLAITQSVI 285
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + G + + M + I+ F+ SG
Sbjct 286 FVNTRRKVDWLTDKMRGR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 332
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVI 748
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 333 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 391
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/181 (18%), Positives = 67/181 (37%), Gaps = 5/181 (3%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
D + ++L ++ ET + F D ++ + + + Y KP Q +P
Sbjct 17 DSKMQELLNQGETEEF--FTSYDEVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVP 74
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
KG + I A +G GKT L + + + A + +Q + V
Sbjct 75 FCKGLDVIQQAQSGTGKTATFCSGILQQLDY--AVVECQALVLAPTRELAQQIEKVMRAL 132
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 133 GDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDE 191
Query 374 C 374
Sbjct 192 A 192
>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP2 PE=3
SV=1
Length=542
Score = 115 bits (288), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 75/202 (37%), Gaps = 24/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
KD +DF + ++ R + ++ + K + + L
Sbjct 315 KDVRQLAQDFLHDYIQVNIGSMDLSANHRITQIVEIVSEF--------EKRDRMAKHLDR 366
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N + ++F T+ + D + ++ + G + + +
Sbjct 367 IMEANKHSKVLIFTGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERDW 414
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N + I GR A+G+
Sbjct 415 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTA 473
Query 738 CFLLTSNAGVIEKEQINMYKEK 759
L T++ ++ + + E
Sbjct 474 ITLFTTDNAKQARDLVAILSES 495
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 79/438 (18%), Positives = 152/438 (35%), Gaps = 42/438 (10%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL 250
+ T +++ + +I + + P + E P +S+ +P Q +
Sbjct 96 VSQRSTHEVDAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQG 155
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQK 307
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 156 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQ 215
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+ +K+ + R T + G + + + ++ I TP L++ L+ G +L T
Sbjct 216 TEITKFGKSSRIRNTCVYGGVPKGPQIRDLTRGVEVCIATPGRLIDMLEAGK-TNLRRVT 274
Query 368 LMIFDECHNT--SKQHP-YNMIMFNYL-DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
++ DE P I+ D++ S P+ D + +
Sbjct 275 YLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTCMWSATWPK-----------DVRQLAQD 323
Query 424 L--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE--SRISDKFKYIIAQLM 479
DYI S+D S H + ++ ++V + +K R + RI + K+ +
Sbjct 324 FLHDYIQVNIGSMDLS----ANHRITQIVEIVSEFEKRDRMAKHLDRIMEANKHSKVLIF 379
Query 480 RDTESLAKRICKDLENLSQIQNREFGT--QKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
T+ +A I + L G Q W++ K M D SR
Sbjct 380 TGTKRVADDITRFLRQDGWPALSIHGDKQQNERDWVLNEFKTGKSPIMVATDVASRGI-- 437
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA-AGFDEIEQDLTQRFEEKLQE 596
D + + ++ DY+ RA A I T ++
Sbjct 438 ---------DVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITLFTTDNAKQARDL 488
Query 597 LESVSRDPSNENPKLEDL 614
+ +S +P+L ++
Sbjct 489 VAILSESKQQIDPRLAEM 506
>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp2
PE=3 SV=1
Length=545
Score = 115 bits (288), Expect = 2e-25, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 74/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + K + + L++
Sbjct 309 KEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDF--------EKRDKMIKHLEK 360
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N ++F T+ + D + ++ + G + + +
Sbjct 361 IME-NRGNKCLIFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 407
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 408 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTA 466
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T+ ++ + + E
Sbjct 467 ITFFTTENSKQARDLVTILTE 487
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/160 (23%), Positives = 64/160 (40%), Gaps = 4/160 (3%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
+N E P +S+ +P Q + A+ G++ + A TG GKT L
Sbjct 117 PVENFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 176
Query 278 CEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
H+ P G V+ A + Q ++ SK+ + R T + G + +
Sbjct 177 AIVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQI 236
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ I TP L++ L+ G +L T ++ DE
Sbjct 237 RDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVTYLVLDEA 275
>sp|Q0UWA6|DED1_PHANO ATP-dependent RNA helicase DED1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DED1 PE=3 SV=1
Length=696
Score = 116 bits (290), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 64/147 (44%), Gaps = 16/147 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L + H + ++++FV+T+ + D+L +++ G T+ + T
Sbjct 448 RSVLLDILHTHGAGLSLIFVETKRMADSLSDFLINQ------------GFPATSIHGDRT 495
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
++ L+ F+ SG IL+AT+VA G+DI V+ Y+ + + I GR
Sbjct 496 QREREKALEMFR-SGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRA 554
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKE 758
G + ++ +++ KE
Sbjct 555 GNTGIATAFFNRGNRGVVRDLLDLLKE 581
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/190 (18%), Positives = 63/190 (33%), Gaps = 25/190 (13%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
+ + P +L N T + Y + + M G++
Sbjct 190 EASGQGVPEPVTRFTNPPLDDHLLSNIELSGYKVPTP------VQKYSIPIV---MGGRD 240
Query 260 TIICAPTGCGKT--FVSLLICEHHLKKFPQGQKGKV-------------VFFANQIPVYE 304
+ CA TG GKT F+ ++ + + + A +
Sbjct 241 LMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVS 300
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q K+ R R + G + QI D+++ TP LV+ +++G I SL+
Sbjct 301 QIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI-SLA 359
Query 365 IFTLMIFDEC 374
++ DE
Sbjct 360 SIKYLVLDEA 369
>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp2 PE=3 SV=1
Length=563
Score = 115 bits (288), Expect = 2e-25, Method: Composition-based stats.
Identities = 36/201 (18%), Positives = 75/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF +N ++ R + ++ + K + + L++
Sbjct 330 KEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEF--------EKRDRMIKHLEK 381
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N ++F T+ + D + ++ + G + + +
Sbjct 382 IME-NRGNKCLVFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 428
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ VI Y+Y N + I GR A+G+
Sbjct 429 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTA 487
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T++ ++ + + E
Sbjct 488 ITFFTTDNAKQARDLVTILSE 508
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 5/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
++++ + ++ + ++ P + E P +S+ KP Q + A
Sbjct 115 SQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMA 174
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT L H+ P G V+ A + Q ++ S
Sbjct 175 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEIS 234
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 235 KFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVTYLVL 293
Query 372 DEC 374
DE
Sbjct 294 DEA 296
>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 OS=Nicotiana
plumbaginifolia OX=4092 PE=2 SV=1
Length=413
Score = 113 bits (283), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 FDIQKFY 398
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/177 (17%), Positives = 63/177 (36%), Gaps = 5/177 (3%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D + + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
+ I A +G GKT C L++ + + + A + +Q + V +
Sbjct 79 DVIQQAQSGTGKT---ATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 191
>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp2
PE=3 SV=1
Length=554
Score = 115 bits (287), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + K + + L++
Sbjct 320 KEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDF--------EKRDKMIKHLEK 371
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N ++F T+ + D + ++ + G + + +
Sbjct 372 IME-NRGNKCLIFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 418
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N + I GR A+G+
Sbjct 419 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTA 477
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T++ ++ + + E
Sbjct 478 ITFFTTDNSKQARDLVTILTE 498
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/183 (20%), Positives = 73/183 (40%), Gaps = 5/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
D+++ + ++ + + P + E P +S+ +P Q + A
Sbjct 105 SQRDVDEFRKKFEMSVQGKNIPRPVETFDEAGFPQYVLSEVKAQGFERPTAIQSQGWPMA 164
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT L H+ P G V+ A + Q ++ +
Sbjct 165 LSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQAEIT 224
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K+ + R T + G + + + ++ I TP L++ L+ G +L T ++
Sbjct 225 KFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVTYLVL 283
Query 372 DEC 374
DE
Sbjct 284 DEA 286
>sp|Q4WP13|DED1_ASPFU ATP-dependent RNA helicase ded1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=ded1 PE=3 SV=1
Length=674
Score = 116 bits (289), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/199 (23%), Positives = 79/199 (40%), Gaps = 32/199 (16%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A D+LKD+ + +++TQ+ E ++ K L IL
Sbjct 402 ARDFLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTH- 447
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+T++FV+T+ + DAL +++ T + T ++ L
Sbjct 448 --GTSGLTLIFVETKRMADALSDFLLNQR------------FPATAIHGDRTQRERERAL 493
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCF 739
+ F+ SG IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 494 EMFR-SGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATA 552
Query 740 LLTSNAGVIEKEQINMYKE 758
+ + +E I++ KE
Sbjct 553 FFNRSNRGVVRELIDLLKE 571
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/189 (21%), Positives = 68/189 (36%), Gaps = 28/189 (15%)
Query 213 YQEDPECQNLSENSCPPSEVS----DTNLYSPFKPRNYQLELALPA------MKGKNTII 262
Y + P + + P + + D +L S K YQ + M G++ +
Sbjct 171 YDDIPVEASGHDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMA 230
Query 263 CAPTGCGKTFVSLLICEHHL-------------KKFPQGQKGKV----VFFANQIPVYEQ 305
CA TG GKT L +F G++ K + A + Q
Sbjct 231 CAQTGSGKTGGFLFPILSQAFQTGPSPVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQ 290
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
K+ R R + G + QI D+++ TP LV+ +++G I ++
Sbjct 291 IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN- 349
Query 366 FTLMIFDEC 374
++ DE
Sbjct 350 IKYLVLDEA 358
>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A OS=Triticum
aestivum OX=4565 PE=2 SV=1
Length=414
Score = 112 bits (281), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 72/187 (39%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KL+ LC + Y T +++
Sbjct 230 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLC----DLYETLAITQSVI 285
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + G + + M + I+ F+ SG
Sbjct 286 FVNTRRKVDWLTDKMRGR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 332
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N I GR +G +T +
Sbjct 333 VLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERML 392
Query 750 KEQINMY 756
+ Y
Sbjct 393 FDIQKFY 399
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 70/182 (38%), Gaps = 7/182 (4%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
D + ++L + ET + F D ++ + + + Y KP Q +P
Sbjct 17 DSKMQELLSQGETEEF--FTSYDEVHESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVP 74
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSK 312
KG + I A +G GKT C L++ G + + + A + +Q + V
Sbjct 75 FCKGLDVIQQAQSGTGKT---ATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 131
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G +V G T+ + +++ TP + + +++ ++ + + D
Sbjct 132 LGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDIVRRQSL-RPDNIKMFVLD 190
Query 373 EC 374
E
Sbjct 191 EA 192
>sp|Q2HBE7|DED1_CHAGB ATP-dependent RNA helicase DED1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DED1 PE=3 SV=1
Length=688
Score = 115 bits (288), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/319 (18%), Positives = 120/319 (38%), Gaps = 46/319 (14%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
EE + Y+ + R + Q+ R + L L +L +
Sbjct 299 YEEARKFAYR--SWVRPCVVYGGADIGSQLRQMERGCDLLVAT-PGRLVDLIERGRISLC 355
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + T+ R+ ++ +D
Sbjct 356 NIKY----LVLDEADRMLDMGFEPQIRRIVQGEDMPTTGQRQ----TLMFSATFPRDIQM 407
Query 566 YLKDFFSN---VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
+DF ++ + +++TQ K++ +E V D +L +
Sbjct 408 LAQDFLNDYVFLSVGRVGSTSENITQ----KVEYVEDV------------DKRSVLLDIL 451
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
H + +T++FV+T+ + D+L +++ T+ + T ++ L
Sbjct 452 HTHAGGLTLIFVETKRMADSLSDFLINQ------------NFPATSIHGDRTQRERERAL 499
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCF 739
+ F+ +G IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 500 ELFR-NGKCPILVATAVAARGLDIPNVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATA 558
Query 740 LLTSNAGVIEKEQINMYKE 758
I +E +++ KE
Sbjct 559 FFNRGNRGIVRELLDLLKE 577
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 25/187 (13%)
Query 212 FYQEDPECQNLSENSCPPSEVS----DTNLYSPFKPRNYQLELALPA------MKGKNTI 261
Y + P + + P S D +L S + YQ+ + + G++ +
Sbjct 180 KYDDIPVNPSGRDVPEPVLTFSNPPLDAHLLSNIELARYQIPTPVQKYSIPIVINGRDLM 239
Query 262 ICAPTGCGKTFVSLLICEHH-LKKFPQGQKGK-------------VVFFANQIPVYEQQK 307
CA TG GKT L H + P + + A + Q
Sbjct 240 ACAQTGSGKTGGFLFPIMHQSFTQGPSPIPAQSGGGYRQRKAYPTALILAPTRELVSQIY 299
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R R + G + Q+ D+++ TP LV+ +++G I SL
Sbjct 300 EEARKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRI-SLCNIK 358
Query 368 LMIFDEC 374
++ DE
Sbjct 359 YLVLDEA 365
>sp|A4RHF1|DED1_PYRO7 ATP-dependent RNA helicase DED1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DED1 PE=3 SV=2
Length=671
Score = 115 bits (288), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 115/317 (36%), Gaps = 40/317 (13%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E + Y+ + R + Q+ R + L L +L +
Sbjct 291 YDESRKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLC 347
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + R+ + A D
Sbjct 348 NIKY----LVLDEADRMLDMGFEPQIRRIVEGEDMPNVQDRQTLMFSATFPGYIQQLARD 403
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQR E + K+ L +L
Sbjct 404 FLKDYI-FLSVGRVGSTSENITQRVMEVKH-----------RDDKISHLLDLLSTH---- 447
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ D L ++++ T+ + T ++ L+ F
Sbjct 448 GGGLTLIFVETKRNADELSDFLQNQNL------------PATSIHGDRTQRERERALEMF 495
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG----SKCFLL 741
+ +G IL+AT+VA G+DI VI Y+ ++ + GR G + F
Sbjct 496 R-TGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFD 554
Query 742 TSNAGVIEKEQINMYKE 758
+ + +E +N+ KE
Sbjct 555 MKDNSGVAQELLNILKE 571
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/190 (21%), Positives = 64/190 (34%), Gaps = 28/190 (15%)
Query 212 FYQEDPECQNLSENSCPPSEVS----DTNLYSPFKPRNY------QLELALPAMKGKNTI 261
Y + P + + P S D +L S + Y Q M G++ +
Sbjct 169 KYDDIPVEASGHDVPEPVYTFSNPPLDDHLISNIELARYKVPTPVQKYSVPIVMGGRDLM 228
Query 262 ICAPTGCGKTFVSLLICEHHL-----------KKFPQGQKGK------VVFFANQIPVYE 304
CA TG GKT L + P G + + A +
Sbjct 229 ACAQTGSGKTGGFLFPILSQAFKTGPSPIPATNQGPGGYGRQRKAYPTSLILAPTRELVS 288
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q K+ R R + G + QI D+++ TP LV+ +++G I SL
Sbjct 289 QIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI-SLC 347
Query 365 IFTLMIFDEC 374
++ DE
Sbjct 348 NIKYLVLDEA 357
>sp|Q40465|IF411_TOBAC Eukaryotic initiation factor 4A-11 OS=Nicotiana
tabacum OX=4097 PE=2 SV=1
Length=413
Score = 112 bits (281), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/187 (23%), Positives = 74/187 (40%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + G + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRGR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N + I GR +G +T + +
Sbjct 332 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERML 391
Query 750 KEQINMY 756
+ Y
Sbjct 392 FDIQKFY 398
Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 61/176 (35%), Gaps = 3/176 (2%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D ++ + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQQEFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ I A +G GKT L + + + A + +Q + V + G
Sbjct 79 DVIQQAQSGTGKTATFCSGILQQLDYSLV--ECQALVLAPTRELAQQIEKVMRALGDYLG 136
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 137 VKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDNIKMFVLDEA 191
>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp2 PE=3 SV=1
Length=565
Score = 114 bits (285), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/201 (17%), Positives = 75/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + K + + L++
Sbjct 327 KEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDF--------EKRDKMIKHLEK 378
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
N ++F T+ + D + ++ + G + + +
Sbjct 379 IME-NRANKCLIFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 425
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N + I GR A+G+
Sbjct 426 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTA 484
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T++ ++ + + E
Sbjct 485 ITFFTTDNSKQARDLVTILTE 505
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/187 (20%), Positives = 75/187 (40%), Gaps = 5/187 (3%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL 250
+ + D+++ + ++ + + P + E P +S+ +P Q +
Sbjct 108 VAERSQRDVDEFRKKHEMAVQGRNVPRPVETFDEAGFPQYVLSEVKAQGFDRPTAIQSQG 167
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQK 307
A+ G++ + A TG GKT L H+ P G V+ A + Q +
Sbjct 168 WPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQ 227
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+ SK+ + R T + G + + + ++ I TP L++ L+ G +L T
Sbjct 228 AEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVT 286
Query 368 LMIFDEC 374
++ DE
Sbjct 287 YLVLDEA 293
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex
subunit 3 OS=Mus musculus OX=10090 GN=Ascc3 PE=1 SV=1
Length=2198
Score = 116 bits (291), Expect = 5e-25, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 14/164 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKF-----PQGQKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ + + K+V+ A + + + FS
Sbjct 493 NENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFS 552
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
K E G V ++G + +I+ ++ TP+ +V G + I L+
Sbjct 553 KRLEPLGIVVKELTGDM--QLSKSEILRTQM-LVTTPEKWDVVTRKSVGDVALSQIVKLL 609
Query 370 IFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + + I+ L Q S+ + +++GL+A+
Sbjct 610 ILDEVHLLHEDRGPVLESIVARTLRQ--VESTQSMIRILGLSAT 651
Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/156 (20%), Positives = 66/156 (42%), Gaps = 14/156 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERH 317
N ++ APTG GKT + L K+P K V+ A + ++ + E+
Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERMDDWKIRIEEKL 1401
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G +V ++G ++ + D+I+ TP+ + + + + ++I DE H
Sbjct 1402 GKKVIELTGDVTPDMKS---IAKADLIVTTPEKW-DGVSRSWQNRSYVQQVNILIIDEIH 1457
Query 376 -NTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLT 409
++ P ++ + + S P +++GL+
Sbjct 1458 LLGEERGPVLEVIVSRTN--FISSHTEKPVRIVGLS 1491
Score = 41.3 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 44/331 (13%), Positives = 92/331 (28%), Gaps = 52/331 (16%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK------DLENLSQIQNREFGTQKYE 510
++ + RI +K + +L D K I K E + +
Sbjct 1387 RERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQ 1446
Query 511 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 570
Q + + + I +SH K + +S L +
Sbjct 1447 QVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1506
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + R S P + + +P
Sbjct 1507 KQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIR-------SHSPAKPV 1559
Query 631 ILFV----KTRALVDALKNWI------EGNPKLSFLKPGILTGRGKTNQ----------- 669
++FV +TR L ++ + + + + G + +
Sbjct 1560 LIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLTLAFGIGM 1619
Query 670 -NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-----YE-YVGNVI 722
+ G+ +K + + F + +LIATS G++ +LVI+ Y+ +
Sbjct 1620 HHAGLHERDRKTVEELF-VNCKVQVLIATSTLAWGVNFPA-HLVIIKGTEYYDGKTRRYV 1677
Query 723 KM-----IQTRGRGRAR----GSKCFLLTSN 744
+Q GR K +L +
Sbjct 1678 DFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1708
>sp|A1CXK7|DED1_NEOFI ATP-dependent RNA helicase ded1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=ded1
PE=3 SV=1
Length=676
Score = 115 bits (287), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/199 (23%), Positives = 78/199 (39%), Gaps = 32/199 (16%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A D+LKD+ + +++TQ+ E ++ K L IL
Sbjct 404 ARDFLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTH- 449
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+T++FV+T+ + DAL +++ T + T ++ L
Sbjct 450 --GTSGLTLIFVETKRMADALSDFLLNQR------------FPATAIHGDRTQRERERAL 495
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCF 739
+ F+ SG IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 496 EMFR-SGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATA 554
Query 740 LLTSNAGVIEKEQINMYKE 758
+ +E I++ KE
Sbjct 555 FFNRGNRGVVRELIDLLKE 573
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/189 (21%), Positives = 68/189 (36%), Gaps = 28/189 (15%)
Query 213 YQEDPECQNLSENSCPPSEVS----DTNLYSPFKPRNYQLELALPA------MKGKNTII 262
Y + P + + P + + D +L S K YQ + M G++ +
Sbjct 173 YDDIPVEASGHDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIVMNGRDLMA 232
Query 263 CAPTGCGKTFVSLLICEHHL-------------KKFPQGQKGKV----VFFANQIPVYEQ 305
CA TG GKT L +F G++ K + A + Q
Sbjct 233 CAQTGSGKTGGFLFPILSQAFQTGPSAVPAQASGQFGYGRQRKAYPTSLILAPTRELVSQ 292
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
K+ R R + G + QI D+++ TP LV+ +++G I ++
Sbjct 293 IFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN- 351
Query 366 FTLMIFDEC 374
++ DE
Sbjct 352 IKYLVLDEA 360
>sp|Q2GWJ5|FAL1_CHAGB ATP-dependent RNA helicase FAL1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=FAL1 PE=3 SV=1
Length=394
Score = 112 bits (279), Expect = 5e-25, Method: Composition-based stats.
Identities = 42/182 (23%), Positives = 72/182 (40%), Gaps = 20/182 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E+ K + LC + Y T ++
Sbjct 216 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVI 271
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 272 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGDMPQKERDSIMQDFR-QGNSR 318
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 319 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 378
Query 750 KE 751
++
Sbjct 379 RD 380
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 63 KGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQIQSVVMALGD 120
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ I+ TP + + +++ + +++ DE
Sbjct 121 YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 178
>sp|Q9P6U9|DED1_NEUCR ATP-dependent RNA helicase ded1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-9 PE=3 SV=1
Length=688
Score = 114 bits (286), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/321 (18%), Positives = 118/321 (37%), Gaps = 50/321 (16%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E + Y+ + R + Q+ R + L L +L +
Sbjct 296 YDEARKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLC 352
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD--- 562
KY + + +A + M + + RI + + K ND + A
Sbjct 353 NIKY----LVLDEADRMLDMGFEPQIRRIVEG-----EDMPKVNDRQTLMFSATFPRDIQ 403
Query 563 --ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
A D+LKD+ + +++TQ+ E +++++ +L +
Sbjct 404 ILARDFLKDYI-FLSVGRVGSTSENITQKV-EYVEDIDK---------------RSVLLD 446
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H + +T++FV+T+ + D+L +++ T+ + T ++
Sbjct 447 ILHTHAGGLTLIFVETKRMADSLSDFLINQ------------NFPATSIHGDRTQRERER 494
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSK 737
L+ F+ +G IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 495 ALEMFR-NGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIA 553
Query 738 CFLLTSNAGVIEKEQINMYKE 758
+ +E + + KE
Sbjct 554 TAFFNRGNRGVVRELLELLKE 574
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/188 (21%), Positives = 63/188 (34%), Gaps = 26/188 (14%)
Query 212 FYQEDPECQNLSENSCPPSEVS----DTNLYSPFKPRNY------QLELALPAMKGKNTI 261
Y + P + P S D +L S + Y Q M G++ +
Sbjct 176 KYDDIPVEASGDNVPEPVLTFSNPPLDNHLISNIQLARYNVPTPVQKYSIPIVMGGRDLM 235
Query 262 ICAPTGCGKTFVSLLICEHH--------LKKFPQGQKGK-------VVFFANQIPVYEQQ 306
CA TG GKT L + G G+ + A + Q
Sbjct 236 ACAQTGSGKTGGFLFPILSQSFHTGPSPIPASAAGAYGRQRKAYPTALILAPTRELVSQI 295
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R R + G + QI D+++ TP LV+ +++G I SL
Sbjct 296 YDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI-SLCNI 354
Query 367 TLMIFDEC 374
++ DE
Sbjct 355 KYLVLDEA 362
>sp|Q2UGK3|DED1_ASPOR ATP-dependent RNA helicase ded1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=ded1
PE=3 SV=1
Length=675
Score = 114 bits (286), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 114/316 (36%), Gaps = 41/316 (13%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+E + Y+ + R + Q+ R + L L +L +
Sbjct 291 DEARKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLVN 347
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICK-ALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + + + + +M A D
Sbjct 348 IKY----LILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQML-ARD 402
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQ+ E ++ K L IL
Sbjct 403 FLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTH---G 446
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ + D+L +++ T + T ++ L+ F
Sbjct 447 TSGLTLIFVETKRMADSLSDFLLNQR------------FPATAIHGDRTQRERERALEMF 494
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ SG IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 495 R-SGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 553
Query 743 SNAGVIEKEQINMYKE 758
+ ++ I++ KE
Sbjct 554 RGNRGVVRDLIDLLKE 569
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 65/182 (36%), Gaps = 25/182 (14%)
Query 214 QEDPECQNLSENSCPPSEVSDTNLYSPFK----PRNYQLELALPAMKGKNTIICAPTGCG 269
Q PE N N + + ++ + Y + + M G++ + CA TG G
Sbjct 179 QNVPEPVNAFTNPPLDDHLIANITLAHYQTPTPVQKYSIPIV---MNGRDLMACAQTGSG 235
Query 270 KTFVSLLICEHHL-------------KKFPQGQKGKV----VFFANQIPVYEQQKSVFSK 312
KT L +F G++ K + A + Q K
Sbjct 236 KTGGFLFPILSQAFQNGPSPTPAPASGQFSYGRQRKAYPTSLILAPTRELVSQIFDEARK 295
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ R R + G + QI D+++ TP LV+ +++G I ++ +I D
Sbjct 296 FAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-IKYLILD 354
Query 373 EC 374
E
Sbjct 355 EA 356
>sp|A2QI25|DED1_ASPNC ATP-dependent RNA helicase ded1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=ded1 PE=3 SV=1
Length=678
Score = 114 bits (286), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 114/316 (36%), Gaps = 41/316 (13%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+E + Y+ + R + Q+ R + L L +L +
Sbjct 292 DEARKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLVN 348
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICK-ALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + + + + +M A D
Sbjct 349 IKY----LILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQML-ARD 403
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQ+ E ++ K L IL
Sbjct 404 FLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTH---G 447
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ + D+L +++ T + T ++ L+ F
Sbjct 448 TSGLTLIFVETKRMADSLSDFLLNQR------------FPATAIHGDRTQRERERALEMF 495
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ SG IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 496 R-SGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 554
Query 743 SNAGVIEKEQINMYKE 758
+ ++ I++ KE
Sbjct 555 RGNRGVVRDLIDLLKE 570
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/181 (20%), Positives = 66/181 (36%), Gaps = 25/181 (14%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFK----PRNYQLELALPAMKGKNTIICAPTGCGK 270
+ PE N N + + + ++ + Y + + M G++ + CA TG GK
Sbjct 181 DVPEPVNAFTNPPLDDHLIENIKLAHYQTPTPVQKYSIPIV---MNGRDLMACAQTGSGK 237
Query 271 TFVSLLICEHHLKK-------------FPQGQKGKV----VFFANQIPVYEQQKSVFSKY 313
T L + F G++ K + A + Q K+
Sbjct 238 TGGFLFPILSQAYQNGPSAAPAQAGGQFGYGRQRKAYPTSLILAPTRELVSQIFDEARKF 297
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R R + G + QI D+++ TP LV+ +++G I ++ +I DE
Sbjct 298 AYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-IKYLILDE 356
Query 374 C 374
Sbjct 357 A 357
>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp2 PE=3 SV=1
Length=549
Score = 113 bits (283), Expect = 7e-25, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 75/201 (37%), Gaps = 25/201 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF ++ ++ R + ++ + K + + L++
Sbjct 315 KEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDF--------EKRDKMIKHLEK 366
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ ++F T+ + D + ++ + G + + +
Sbjct 367 IME-DRSNKILIFTGTKRIADEITRFLRQD------------GWPALSIHGDKQQQERDW 413
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FKA G I++AT VA GID+ V+ Y+Y N I I GR A+G+
Sbjct 414 VLNEFKA-GKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTA 472
Query 738 CFLLTSNAGVIEKEQINMYKE 758
T++ ++ + + E
Sbjct 473 ITFFTTDNSKQARDLVTILTE 493
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 4/160 (3%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
+ E P +S+ +P Q + A+ G++ + A TG GKT L
Sbjct 123 PVETFDEAGFPQYVLSEVKSQGFERPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLP 182
Query 278 CEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
H+ P G V+ A + Q ++ +K+ + R T + G + +
Sbjct 183 AIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQI 242
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ I TP L++ L+ G +L T ++ DE
Sbjct 243 RDLSRGVEVCIATPGRLIDMLEAGR-TNLRRVTYLVLDEA 281
>sp|Q4I7K4|DED1_GIBZE ATP-dependent RNA helicase DED1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DED1 PE=3 SV=1
Length=675
Score = 114 bits (285), Expect = 8e-25, Method: Composition-based stats.
Identities = 63/357 (18%), Positives = 129/357 (36%), Gaps = 43/357 (12%)
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+ G +A + + Y L + +++ + +E + Y+ + R
Sbjct 250 INGPSAVPANAAGQFGRQRKAYPTSLILAPTRELVSQI---FDESRKFAYR--SWVRPCV 304
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
+ Q+ R + L L +L + KY + + +A +
Sbjct 305 VYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLQNIKY----LVLDEADRMLD 359
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
M + + RI + + R+ A D+LKD+ + +
Sbjct 360 MGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYI-FLSVGRVGSTSE 418
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
++TQ K++ +E V D +L + H + +T++FV+T+ + D+L
Sbjct 419 NITQ----KVEYVEDV------------DKRSVLLDILHSHANGLTLIFVETKRMADSLS 462
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+++ T+ + T ++ L+ F+ +G IL+AT+VA G+
Sbjct 463 DFLINQ------------NFPATSIHGDRTQRERERALEFFR-NGRCPILVATAVAARGL 509
Query 705 DIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
DI VI Y+ + + I GR G I +E +++ KE
Sbjct 510 DIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMDLLKE 566
Score = 56.7 bits (135), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 53/133 (40%), Gaps = 16/133 (12%)
Query 257 GKNTIICAPTGCGKT--FVSLLICEHHLKK---FPQGQKGKV----------VFFANQIP 301
G++ + CA TG GKT F+ ++ + + P G+ + A
Sbjct 223 GRDLMACAQTGSGKTGGFLFPILSQAFINGPSAVPANAAGQFGRQRKAYPTSLILAPTRE 282
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K+ R R + G + QI D+++ TP LV+ +++G I
Sbjct 283 LVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRI- 341
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 342 SLQNIKYLVLDEA 354
>sp|Q9P735|FAL1_NEUCR ATP-dependent RNA helicase fal-1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=fal-1 PE=3 SV=2
Length=400
Score = 111 bits (277), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E+ K + LC + Y T ++
Sbjct 215 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVI 270
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 271 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGDMPQKERDSIMQDFR-QGNSR 317
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 318 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 377
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 378 RDIELYYSTQI 388
Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 62 KGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQIQSVVMALGD 119
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ I+ TP + + +++ + +++ DE
Sbjct 120 YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 177
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex
subunit 3 OS=Bos taurus OX=9913 GN=ascc3 PE=3 SV=1
Length=2201
Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 14/164 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-----GQKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ Q + K+V+ A + + + FS
Sbjct 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
K E G V ++G + +I+ ++ TP+ +V G + I L+
Sbjct 552 KRLEPLGIVVKELTGDM--QLSKNEILRTQM-LVTTPEKWDVVTRKSVGDVALSQIVKLL 608
Query 370 IFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + + I+ L Q S+ + +++GL+A+
Sbjct 609 ILDEVHLLHEDRGPVLESIVARTLRQ--VESTQSMIRILGLSAT 650
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/156 (21%), Positives = 68/156 (44%), Gaps = 14/156 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS-KYFERH 317
N ++ APTG GKT + L K+P K V+ A + ++ + + E+
Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERMDDWKVRIEEKL 1400
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G +V ++G ++ + D+I+ TP+ + + + + T++I DE H
Sbjct 1401 GKKVIELTGDVTPDMKS---IAKADLIVTTPEKW-DGVSRSWQNRNYVKQVTILIIDEIH 1456
Query 376 -NTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLT 409
++ P ++ + + S P +++GL+
Sbjct 1457 LLGEERGPVLEVIVSRTN--FISSHTEKPVRIVGLS 1490
Score = 41.3 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 44/331 (13%), Positives = 92/331 (28%), Gaps = 52/331 (16%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK------DLENLSQIQNREFGTQKYE 510
++ + RI +K + +L D K I K E + +
Sbjct 1386 RERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVK 1445
Query 511 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 570
Q + + + I +SH K + +S L +
Sbjct 1446 QVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1505
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + R S P + + +P
Sbjct 1506 RQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIR-------SHSPAKPV 1558
Query 631 ILFV----KTRALVDALKNWI------EGNPKLSFLKPGILTGRGKTNQ----------- 669
++FV +TR L ++ + + + + G + +
Sbjct 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLTLAFGIGM 1618
Query 670 -NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-----YE-YVGNVI 722
+ G+ +K + + F + +LIATS G++ +LVI+ Y+ +
Sbjct 1619 HHAGLHERDRKTVEELF-VNCKIQVLIATSTLAWGVNFPA-HLVIIKGTEYYDGKTRRYV 1676
Query 723 KM-----IQTRGRGRAR----GSKCFLLTSN 744
+Q GR K +L +
Sbjct 1677 DFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
>sp|C8V8H4|DED1_EMENI ATP-dependent RNA helicase ded1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=ded1 PE=3 SV=1
Length=668
Score = 114 bits (285), Expect = 9e-25, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 32/199 (16%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A D+LKD+ + +++TQ+ E ++ K L IL
Sbjct 398 ARDFLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTHG 444
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+T++FV+T+ + DAL ++ T + T ++ L
Sbjct 445 TT---GLTLIFVETKRMADALSEFLINQR------------FPATAIHGDRTQRERERAL 489
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCF 739
+ F+ SG + IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 490 EMFR-SGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATA 548
Query 740 LLTSNAGVIEKEQINMYKE 758
+ ++ I++ KE
Sbjct 549 FFNRGNRGVVRDLIDLLKE 567
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 23/179 (13%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFK----PRNYQLELALPAMKGKNTIICAPTGCGK 270
+ PE N N + + ++ + Y + + M G++ + CA TG GK
Sbjct 180 DVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIV---MNGRDLMACAQTGSGK 236
Query 271 TFVSLLICEHHL--------KKFPQGQKGK-------VVFFANQIPVYEQQKSVFSKYFE 315
T L GQ G+ + A + Q K+
Sbjct 237 TGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEARKFAY 296
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R R + G + QI D+++ TP LV+ +++G I ++ +I DE
Sbjct 297 RSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-IKYLILDEA 354
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex
subunit 3 OS=Danio rerio OX=7955 GN=ascc3 PE=3 SV=2
Length=1534
Score = 115 bits (288), Expect = 9e-25, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 73/166 (44%), Gaps = 17/166 (10%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVFFANQIPVYEQQKSVF 310
+N +ICAPTG GKT +++L H +++ Q + K+V+ A + + + F
Sbjct 89 NENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYF 148
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTL 368
SK E G V ++G + + +++ TP+ +V G + + L
Sbjct 149 SKRLEPLGIAVKELTGDMQ---LTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRL 205
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLG---GSSGPLPQVIGLTAS 411
+I DE H + + L + S+ + +++GL+A+
Sbjct 206 LILDEVHLLHED---RGPVLESLVARTLRQVESTQSMIRILGLSAT 248
Score = 81.8 bits (200), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/201 (18%), Positives = 80/201 (40%), Gaps = 16/201 (8%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNY---QLELALPAM-KGKNTIICAPTGCGKTF 272
P + L P + + + S +K +Y Q ++ N ++ APTG GKT
Sbjct 860 PHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTI 919
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERHGYRVTGISGATAEN 331
+ + +P KVV+ A + ++ + E+ G +V ++G +
Sbjct 920 AAEMAIFRVFNMYP---TSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELTGDNTPD 976
Query 332 VPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH-NTSKQHPYNMIMF 388
+ + D+I+ TP+ + + + + ++I DE H + P ++
Sbjct 977 MRA---IAQADLIVTTPEKW-DGVSRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEVIV 1032
Query 389 NYLDQKLGGSSGPLPQVIGLT 409
+ + + + +V+GL+
Sbjct 1033 SRTN-FISSHTSKTVRVVGLS 1052
>sp|Q4WEB4|FAL1_ASPFU ATP-dependent RNA helicase fal1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=fal1 PE=3 SV=2
Length=398
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 213 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 268
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 269 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 315
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 316 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 375
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 376 RDIELYYSTQI 386
Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 60 KGRDTIAQAQSGTGKTATFSIGILQVIDTV--VRETQALVLSPTRELATQIQSVIMALGD 117
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ ++ TP + + +++ + +++ DE
Sbjct 118 YMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 175
>sp|Q4IAA0|FAL1_GIBZE ATP-dependent RNA helicase FAL1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=FAL1 PE=3 SV=1
Length=401
Score = 111 bits (276), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E+ K + LC + Y T ++
Sbjct 216 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVI 271
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 272 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGDMPQKERDSIMQDFR-QGNSR 318
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +T+ I
Sbjct 319 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTTEDVRIL 378
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 379 RDIELYYSTQI 389
Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/128 (16%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + ++ + + + + Q
Sbjct 54 QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQI 111
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ I+ TP + + +++ +
Sbjct 112 QSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHL-RTRHI 170
Query 367 TLMIFDEC 374
+++ DE
Sbjct 171 KMLVLDEA 178
>sp|A7EJY3|DED1_SCLS1 ATP-dependent RNA helicase ded1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=ded1 PE=3 SV=1
Length=678
Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 16/147 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L + H + +T++FV+T+ + D+L +++ T+ + T
Sbjct 433 RSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQ------------NFPATSIHGDRT 480
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
++ L+ F+ +G IL+AT+VA G+DI V+ Y+ + + I GR
Sbjct 481 QRERERALEMFR-NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRA 539
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKE 758
G + ++ I + KE
Sbjct 540 GNTGISTAFFNRGNRGVVRDLIELLKE 566
Score = 56.7 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 74/214 (35%), Gaps = 34/214 (16%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
++ F + + + +D+ + + + P +L +N +
Sbjct 160 QQTGINFEKY---DDIPVEASGQDVPE------PVLKFTNPPLDDHLIKN------IELA 204
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH--------LKKFPQ 287
+ P + Y + + M G++ + CA TG GKT L +
Sbjct 205 HYKVPTPVQKYSIPIV---MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPIPANAA 261
Query 288 GQKGKV-------VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
G G+ + A + Q K+ R R + G + Q+
Sbjct 262 GSFGRTRKAYPTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERG 321
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D+++ TP LV+ +++G I SL ++ DE
Sbjct 322 CDLLVATPGRLVDLIERGRI-SLQNIKYLVLDEA 354
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRR2
PE=1 SV=2
Length=2163
Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/238 (21%), Positives = 94/238 (39%), Gaps = 29/238 (12%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS---ENSCPPSEVSDTNLYSPFKPRN 245
E K V+ + E + + E E +L + + P SE + N
Sbjct 450 EGSFKRVKPQYDEIHIPAPSKPVIDYELKEITSLPDWCQEAFPSSETTSLNPI------- 502
Query 246 YQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-------KVVFFA 297
Q ++ A +G N +ICAPTG GKT ++LL L + K+V+ A
Sbjct 503 -QSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIVYIA 561
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ ++Q F + G +V ++G + + + ++ +++ TP+ +
Sbjct 562 PLKALVQEQVREFQRRLAFLGIKVAELTGDSRLS---RKQIDETQVLVSTPEKWDITTRN 618
Query 358 G-TIPSLSIFTLMIFDECHNTSKQ-HPYNM--IMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ + + L+I DE H P + + K G P++IGL+A+
Sbjct 619 SNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEY---PRIIGLSAT 673
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 21/132 (16%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query 251 ALPAMKGKNTIICAPTG--CGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
++ N + +G GKT ++ L +H ++ KG+ V+ ++
Sbjct 1355 VFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQ----NKGRAVYINPS----GEKID 1406
Query 309 VFSKYFERHGYRVTG---ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ + + G I+ + +++ + +++ TP + L + +I
Sbjct 1407 FLLSDWNKRFSHLAGGKIINKLGNDPSLNLKLLAKSHVLLATP-VQFELLSRRWRQRKNI 1465
Query 366 FT--LMIFDECH 375
+ LMI+D+ H
Sbjct 1466 QSLELMIYDDAH 1477
>sp|A6S4N4|FAL1_BOTFB ATP-dependent RNA helicase fal1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=fal1 PE=3 SV=1
Length=399
Score = 111 bits (276), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E+ K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 61 KGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQIQSVVMALGD 118
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ I+ TP + + +++ + +++ DE
Sbjct 119 YMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNL-RTRHIKMLVLDEA 176
>sp|Q2UAK1|FAL1_ASPOR ATP-dependent RNA helicase fal1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=fal1
PE=3 SV=1
Length=398
Score = 111 bits (276), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 213 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 268
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 269 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 315
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 316 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 375
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 376 RDIELYYSTQI 386
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 60 KGRDTIAQAQSGTGKTATFSISILQVIDTV--VRESQALVLSPTRELATQIQSVIMALGD 117
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ ++ TP + + +++ + +++ DE
Sbjct 118 YMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 175
>sp|Q0CAS8|FAL1_ASPTN ATP-dependent RNA helicase fal1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=fal1
PE=3 SV=1
Length=399
Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 61 KGRDTIAQAQSGTGKTATFAISILQVIDTV--VRESQALVLSPTRELATQIQSVIMALGD 118
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ ++ TP + + +++ + +++ DE
Sbjct 119 YMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 176
>sp|Q5AUL4|FAL1_EMENI ATP-dependent RNA helicase fal1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=fal1 PE=3 SV=1
Length=399
Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 47/128 (37%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + ++ + + + + Q
Sbjct 52 QSRAIVQICKGRDTIAQAQSGTGKT--ATFSISALQVIDTVVRETQALVLSPTRELATQI 109
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ ++ TP + + +++ +
Sbjct 110 QSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHI 168
Query 367 TLMIFDEC 374
+++ DE
Sbjct 169 KMLVLDEA 176
>sp|A5AAE5|FAL1_ASPNC ATP-dependent RNA helicase fal1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=fal1 PE=3 SV=2
Length=399
Score = 110 bits (275), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + ++ + + + + Q
Sbjct 52 QSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTV--VRESQALVLSPTRELATQI 109
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ ++ TP + + +++ +
Sbjct 110 QSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHI 168
Query 367 TLMIFDEC 374
+++ DE
Sbjct 169 KMLVLDEA 176
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex
subunit 3 OS=Rattus norvegicus OX=10116 GN=Ascc3 PE=3 SV=1
Length=2197
Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 14/164 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ + + K+V+ A + + + FS
Sbjct 493 NENMLICAPTGAGKTNIAMLTVLHEIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFS 552
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
K E G V ++G + +I+ ++ TP+ +V G + I L+
Sbjct 553 KRLEPLGIVVKELTGDM--QLSKSEILRTQM-LVTTPEKWDVVTRKSVGDVALSQIVKLL 609
Query 370 IFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + + I+ L Q S+ + +++GL+A+
Sbjct 610 ILDEVHLLHEDRGPVLESIVARTLRQ--VESTQSMIRILGLSAT 651
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/156 (20%), Positives = 66/156 (42%), Gaps = 14/156 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERH 317
N ++ APTG GKT + L K+P K V+ A + ++ + E+
Sbjct 1345 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERMDDWKIRIEEKL 1401
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G +V ++G ++ + D+I+ TP+ + + + + ++I DE H
Sbjct 1402 GKKVIELTGDVTPDMKS---IAKADLIVTTPEKW-DGVSRSWQNRSYVQQVNILIIDEIH 1457
Query 376 -NTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLT 409
++ P ++ + + S P +++GL+
Sbjct 1458 LLGEERGPVLEVIVSRTN--FISSHTEKPVRIVGLS 1491
>sp|A1C595|FAL1_ASPCL ATP-dependent RNA helicase fal1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=fal1 PE=3 SV=1
Length=399
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + ++ + + + + Q
Sbjct 52 QSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDT--AVRETQALVLSPTRELATQI 109
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ ++ TP + + +++ +
Sbjct 110 QSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHI 168
Query 367 TLMIFDEC 374
+++ DE
Sbjct 169 KMLVLDEA 176
>sp|A1D071|FAL1_NEOFI ATP-dependent RNA helicase fal1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=fal1
PE=3 SV=1
Length=399
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRVLVKRDELTLEGIKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS+ I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q +SV +
Sbjct 61 KGRDTIAQAQSGTGKTATFSISILQVIDTV--VRETQALVLSPTRELATQIQSVIMALGD 118
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ ++ TP + + +++ + +++ DE
Sbjct 119 YMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 176
>sp|P27639|IF4A_CAEEL Eukaryotic initiation factor 4A OS=Caenorhabditis
elegans OX=6239 GN=inf-1 PE=2 SV=1
Length=402
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/201 (24%), Positives = 78/201 (39%), Gaps = 22/201 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+V + L ++ E L+ + + + K + LC + Y++ T ++
Sbjct 218 DVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLC----DLYNVVNVTQAVI 273
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + N L G M + I+ F+ SG
Sbjct 274 FCNTRRKVDTLTEKMTENQ----FTVSCLHG--------DMDQAERDTIMREFR-SGSSR 320
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N I I GR +G +T N
Sbjct 321 VLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQL 380
Query 750 KEQINMYKEKM--MNDSILRL 768
KE + Y ++ M +SI L
Sbjct 381 KEIESYYTTQIEEMPESIADL 401
Score = 53.2 bits (126), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/134 (19%), Positives = 50/134 (37%), Gaps = 5/134 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQI 300
KP Q +P GK+ I A +G GKT L++ + + A
Sbjct 51 KPSAIQKRAIVPCTTGKDVIAQAQSGTGKT---ATFSVSILQRIDHEDPHVQALVMAPTR 107
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ +Q + V S E + G T+ ++ +++ TP + + + + +
Sbjct 108 ELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNAL 167
Query 361 PSLSIFTLMIFDEC 374
+ S + + DE
Sbjct 168 DT-SRIKMFVLDEA 180
>sp|Q1DTB3|FAL1_COCIM ATP-dependent RNA helicase FAL1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=FAL1 PE=3 SV=2
Length=399
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E K + LC + Y T ++
Sbjct 214 SMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 46/119 (39%), Gaps = 3/119 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KG++TI A +G GKT + + ++ + + + + Q ++V +
Sbjct 61 KGRDTIAQAQSGTGKTATFAISILQVIDT--ALRETQALVLSPTRELATQIQNVIMAVGD 118
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G T + ++ ++ TP + + +++ + +++ DE
Sbjct 119 YMNVQCHACIGGTNVGDDIRKLDHGQHVVSGTPGRVADMIRRRHL-RTRHIKMLVLDEA 176
>sp|A4QU31|FAL1_PYRO7 ATP-dependent RNA helicase FAL1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=FAL1 PE=3 SV=1
Length=401
Score = 110 bits (275), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E+ K + LC + Y T ++
Sbjct 216 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLC----DLYDTLTITQAVI 271
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 272 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGDMPQKERDSIMQDFR-QGNSR 318
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 319 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 378
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 379 RDIELYYSTQI 389
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/128 (16%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + ++ + + + + Q
Sbjct 54 QSRAIVQVCKGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQI 111
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ I+ TP + + +++ +
Sbjct 112 QSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRHL-RTRHI 170
Query 367 TLMIFDEC 374
+++ DE
Sbjct 171 KMLVLDEA 178
>sp|A7TEF4|FAL1_VANPO ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=FAL1 PE=3 SV=1
Length=399
Score = 110 bits (274), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/354 (18%), Positives = 120/354 (34%), Gaps = 35/354 (10%)
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
A G G + L +++ + L V + V+S
Sbjct 67 AQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMT 126
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
K + L R ++ + + + + R + Q ++ + ++ +
Sbjct 127 GGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFK 186
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
++ + + + KD L+ K F S + + L +R
Sbjct 187 QQIYDIFTKLPAACQVVVVSATM-------SKDILEVTKKFMS--------DPVKILVKR 231
Query 590 FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG 649
E L+ ++ + E+ K + LC + Y T ++F T+ VD L +
Sbjct 232 DEISLEGIKQYYVNVEKEDWKFDTLC----DLYDSLTITQCVIFCNTKKKVDWLSAKLTQ 287
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
+ + + M + ++ F+ SG +LI+T V GID+ Q
Sbjct 288 ------------SNFAVVSMHGDMKQEDRNKVMSDFR-SGHSRVLISTDVWARGIDVQQV 334
Query 710 NLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
+LVI Y+ N I I GR +G +TS+ KE Y+ K+
Sbjct 335 SLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMKEIEKYYRIKI 388
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 46/119 (39%), Gaps = 4/119 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
G + I A +G GKT + + + + + + + Q V S +
Sbjct 60 GTDVIAQAQSGTGKTATFTIGMLQAIDLKR--KDLQALVLSPTRELASQINQVVSNLGDY 117
Query 317 HGYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++G + ++ +N ++ TP +++ K+ + + + ++I DE
Sbjct 118 MNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRN-VQMLILDEA 175
>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP2 PE=3 SV=2
Length=545
Score = 112 bits (279), Expect = 2e-24, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 76/202 (38%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ DF + + R + ++ + K + + L E
Sbjct 318 KEVRQLAHDFLHDYIQVYIGSQDLSANHRITQIVEIVSDF--------EKRDRMINHL-E 368
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ ++ ++F T+ + D + ++ + G + + +
Sbjct 369 RIMDDKKSKILIFTGTKRVADDITRFLRQD------------GWPALSIHGDKQQNERDW 416
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ FK +G I++AT VA GID+ V+ Y+Y N + I GR A+G+
Sbjct 417 VLNEFK-TGKSPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTA 475
Query 738 CFLLTSNAGVIEKEQINMYKEK 759
L T++ ++ +N+ E
Sbjct 476 ITLFTTDNAKQARDLVNILTES 497
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/183 (21%), Positives = 73/183 (40%), Gaps = 5/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+D+E + ++ ++ + P + E P +S+ KP Q + A
Sbjct 103 SAQDVEAFRKEHEMTVYGKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMA 162
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT L H+ P G V+ A + Q ++ +
Sbjct 163 LSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEIT 222
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K+ + R T + G + + ++ I TP L++ L+ G +L T ++
Sbjct 223 KFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDMLEAGK-TNLRRVTYLVL 281
Query 372 DEC 374
DE
Sbjct 282 DEA 284
>sp|A7EM88|FAL1_SCLS1 ATP-dependent RNA helicase fal1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=fal1 PE=3 SV=1
Length=399
Score = 110 bits (274), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPVNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/128 (16%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + ++ + + + + Q
Sbjct 52 QSRAIVQICKGRDTIAQAQSGTGKTATFSISMLQVIDT--AVRETQALVLSPTRELATQI 109
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ I+ TP + + +++ +
Sbjct 110 QSVVMALGDYMNVQCHACIGGTNVGEDIRKLDYGQHIVSGTPGRVADMIRRRNL-RTRHI 168
Query 367 TLMIFDEC 374
+++ DE
Sbjct 169 KMLVLDEA 176
>sp|Q755W0|FAL1_EREGS ATP-dependent RNA helicase FAL1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=FAL1 PE=3 SV=2
Length=398
Score = 110 bits (274), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/324 (19%), Positives = 109/324 (34%), Gaps = 44/324 (14%)
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLEN-LSQIQNREFGTQKYEQWIVTVQKAC 520
+V S + ++ R+ + ++ ++L + ++ + G + +Q I V K C
Sbjct 83 QVIDSSSKDLQALVLSPTRELAAQISQVVRNLGDYMNVVALACTGGKALQQDISKVNKGC 142
Query 521 M---------------------VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+M DE + + L L S
Sbjct 143 HVMSGTPGRVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQVV 202
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ A + V + + L +R E L+ ++ + E K + LC
Sbjct 203 VVSAT--MSKDVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLC---- 256
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ Y T ++F T+ VD L + + N + + M +
Sbjct 257 DLYDSLTITQCVIFCNTKKKVDWLSHKLIQN------------NFAVASIHGDMKQDDRD 304
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGS 736
++ F+ SG +LI+T V GID+ Q +LVI Y+ N I I GR +G
Sbjct 305 KVMSDFR-SGSSRVLISTDVWARGIDVQQVSLVINYDLPELLENYIHRIGRSGRFGRKGV 363
Query 737 KCFLLTSNAGVIEKEQINMYKEKM 760
+T K Y K+
Sbjct 364 AINFITREEVTKLKSIEKHYSIKI 387
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 46/128 (36%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q ++GK+ I A +G GKT + + + + + + Q
Sbjct 50 QSRAITQIIRGKDVIAQAQSGTGKT--ATFTIGMLQVIDSSSKDLQALVLSPTRELAAQI 107
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
V + +G A + ++ + ++ TP +++ +K+ I +
Sbjct 108 SQVVRNLGDYMNVVALACTGGKALQQDISKVNKGCHVMSGTPGRVLDMIKRRIINTRH-V 166
Query 367 TLMIFDEC 374
+++ DE
Sbjct 167 KMLVLDEA 174
>sp|A6QSQ0|FAL1_AJECN ATP-dependent RNA helicase FAL1 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=FAL1 PE=3
SV=1
Length=450
Score = 111 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/191 (23%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L+ L+ E K + LC + Y T ++
Sbjct 214 DMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ G+
Sbjct 270 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGEMPQKERDSIMQDFR-QGNSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +TS I
Sbjct 317 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTSEDVRIL 376
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 377 RDIELYYSTQI 387
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 48/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++TI A +G GKT + + + + + + + + Q
Sbjct 52 QSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVLR--ETQALVLSPTRELATQI 109
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T + ++ ++ TP + + +++ +
Sbjct 110 QSVVMALGDYMNVQCHACIGGTNVGEDIRKLDHGQHVVSGTPGRVADMIRRRHL-RTRHI 168
Query 367 TLMIFDEC 374
+++ DE
Sbjct 169 KMLVLDEA 176
>sp|Q0CLJ6|DED1_ASPTN ATP-dependent RNA helicase ded1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=ded1
PE=3 SV=1
Length=674
Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 114/316 (36%), Gaps = 41/316 (13%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+E + Y+ + R + Q+ R + L L +L +
Sbjct 291 DEARKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLVN 347
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICK-ALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + + + + +M A D
Sbjct 348 IKY----LILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQML-ARD 402
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQ+ E ++ K L IL
Sbjct 403 FLKDYV-FLSVGRVGSTSENITQKVEYV------------EDHDKRSVLLDILHTH---G 446
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ + D+L +++ T + T ++ L+ F
Sbjct 447 TSGLTLIFVETKRMADSLSDFLLNQR------------FPATAIHGDRTQRERERALEMF 494
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ SG IL+AT+VA G+DI VI Y+ + + I GR G
Sbjct 495 R-SGRCPILVATAVAASGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 553
Query 743 SNAGVIEKEQINMYKE 758
+ ++ I++ KE
Sbjct 554 RGNRGVVRDLIDLLKE 569
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/179 (22%), Positives = 63/179 (35%), Gaps = 19/179 (11%)
Query 214 QEDPECQNLSENSCPPSEV-SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
Q+ PE N N + S+ L P Q M G++ + CA TG GKT
Sbjct 179 QDVPEPVNAFTNPPLDDHLISNIALARYLTPTPVQKYSIPIVMNGRDLMACAQTGSGKTG 238
Query 273 VSLLICEHHLKKF-----PQGQKGKV------------VFFANQIPVYEQQKSVFSKYFE 315
L + P G++ + A + Q K+
Sbjct 239 GFLFPILSQAFQNGPSPTPAPAGGQLGYGRQRKAYPTSLILAPTRELVSQIFDEARKFAY 298
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R R + G + QI D+++ TP LV+ +++G I ++ +I DE
Sbjct 299 RSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-IKYLILDEA 356
>sp|Q4P733|DED1_USTMA ATP-dependent RNA helicase DED1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DED1 PE=3 SV=1
Length=672
Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/168 (24%), Positives = 72/168 (43%), Gaps = 21/168 (13%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L + +T++FV+T+ + D L +++ L+ I G T+ + T
Sbjct 440 LLDVLASMPSGGLTLIFVETKRMADMLSDFL--------LRSKI----GATSIHGDRTQR 487
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
++ L+ F+ SG I++AT+VA G+DI V+ Y+ + + I GR
Sbjct 488 ERERALELFR-SGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGN 546
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G I ++ I + KE + + W EAV RE +
Sbjct 547 VGHATAFFNRGNKNIVRDLIELLKE-----ANQEVPQWLEAVARESMF 589
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/134 (22%), Positives = 47/134 (35%), Gaps = 17/134 (13%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHL----------------KKFPQGQKGKVVFFANQI 300
G++ + CA TG GKT L L + + A
Sbjct 226 GRDLMGCAQTGSGKTGGFLFPILSALFTHGPPPPSAAEMAQGGYNRRKAYPSTLILAPTR 285
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q K+ R + + G + QI D++ TP LV+ +++G I
Sbjct 286 ELVSQIHDEARKFTYRSWVKPAVVYGGADIVTQLRQIERGCDLLSATPGRLVDLMERGRI 345
Query 361 PSLSIFTLMIFDEC 374
SLS ++ DE
Sbjct 346 -SLSNVRFLVLDEA 358
>sp|A6SEH9|DED1_BOTFB ATP-dependent RNA helicase ded1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=ded1 PE=3 SV=1
Length=683
Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 115/316 (36%), Gaps = 40/316 (13%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E + Y+ + R + Q+ R + L L +L +
Sbjct 288 YDESRKFAYR--SWVRPCVVYGGADIGSQLRQMERGCDLLVAT-PGRLVDLIERGRISLQ 344
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + R+ A D
Sbjct 345 NIKY----LVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARD 400
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQ+ E +++++ +L + H +
Sbjct 401 FLKDYV-FLSVGRVGSTSENITQKV-EYVEDIDK---------------RSVLLDILHTH 443
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ + D+L +++ T+ + T ++ L+ F
Sbjct 444 GAGLTLIFVETKRMADSLSDFLINQ------------NFPATSIHGDRTQRERERALEMF 491
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ +G IL+AT+VA G+DI V+ Y+ + + I GR G
Sbjct 492 R-NGRCPILVATAVAARGLDIPNVKHVVNYDLPTDIDDYVHRIGRTGRAGNTGISTAFFN 550
Query 743 SNAGVIEKEQINMYKE 758
+ ++ I + KE
Sbjct 551 RGNRGVCRDLIELLKE 566
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 74/214 (35%), Gaps = 34/214 (16%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
++ F + + + +D+ + + + P +L +N +
Sbjct 160 QQTGINFEKY---DDIPVEASGQDVPE------PVLKFTNPPLDDHLIKN------IELA 204
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH--------LKKFPQ 287
+ P + Y + + M G++ + CA TG GKT L +
Sbjct 205 HYKVPTPVQKYSIPIV---MGGRDLMACAQTGSGKTGGFLFPILSQAFQTGPSPVPANAA 261
Query 288 GQKGKV-------VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
G G+ + A + Q K+ R R + G + Q+
Sbjct 262 GSFGRTRKAYPTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERG 321
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D+++ TP LV+ +++G I SL ++ DE
Sbjct 322 CDLLVATPGRLVDLIERGRI-SLQNIKYLVLDEA 354
>sp|A7IB61|HELS_METB6 ATP-dependent DNA helicase Hel308 OS=Methanoregula
boonei (strain DSM 21154 / JCM 14090 / 6A8) OX=456442
GN=hel308 PE=3 SV=1
Length=723
Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 20/165 (12%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GKN ++ PT GKT ++ + H+ GK ++ + ++ F
Sbjct 37 LDGKNLLVAIPTASGKTLIAEMAMHRHI-----ANGGKCLYIVPLKALASEKYEEF---- 87
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +T + + + NDII+ T + + + L+ G + TL++ DE
Sbjct 88 ---GNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGA-RWIPDITLVVIDEI 143
Query 375 H--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
H ++ + P ++ + K P Q+IGL+A++G
Sbjct 144 HLIDSPDRGPTLEMVIAKMRSK-----NPGMQLIGLSATIGNPKV 183
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 69/212 (33%), Gaps = 44/212 (21%)
Query 589 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK---- 644
+F E+++ ++ VS++ + N LC + ++FV +R +A
Sbjct 213 QFAERMRPVKQVSKNYDDLN-----LC-----LDTIAEGGQCLVFVSSRRNAEAFAKRAA 262
Query 645 ---------------NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+EG P +G + G++ + + +AF+ +
Sbjct 263 GAIKSEDAALAACAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKN- 321
Query 690 DHNILIATSVADEGIDIAQCNLVILYE-------------YVGNVIKMIQTRGRGRARGS 736
+ +T G+++ ++I + V +M GR R
Sbjct 322 LLKCISSTPTLAAGLNLPARRVIIR-DYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPY 380
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
+L + E +Y E D R+
Sbjct 381 GEAVLIAKEAEQVPELFEVYIEAEAEDVHSRI 412
>sp|Q54G57|ASCC3_DICDI Activating signal cointegrator 1 complex
subunit 3 OS=Dictyostelium discoideum OX=44689 GN=ascc3 PE=3
SV=1
Length=2195
Score = 114 bits (284), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/204 (22%), Positives = 83/204 (41%), Gaps = 15/204 (7%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLL 276
+ + L E +E+S S K Q + A K +N +I APTG GKT ++LL
Sbjct 458 DNEKLIEIGESIAEISRAAFGSIKKLNRIQSRVFESAYKSNENILISAPTGAGKTNIALL 517
Query 277 ICEHHLKKFPQ------GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
H ++ K+++ A + + FS + G ++G
Sbjct 518 TILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVEKFSNSLKYLGIVSKELTGDMQ- 576
Query 331 NVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIM 387
++ ++ II+ TP+ V K + + L+I DE H + + I+
Sbjct 577 --LTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHLLHEERGPVLECIV 634
Query 388 FNYLDQKLGGSSGPLPQVIGLTAS 411
L Q ++ + +++GL+A+
Sbjct 635 ARTLRQ--VETTQEMIRIVGLSAT 656
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 36/166 (22%), Positives = 74/166 (45%), Gaps = 13/166 (8%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERH 317
N ++ +PTG GKT + L + P KVV+ A + ++ + + F E+
Sbjct 1344 NVLLGSPTGSGKTICAELAMFKVFRDEPH---MKVVYIAPLKALVRERMNDWKVKFQEKL 1400
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G ++ ++G N+ ++N DI+ TP+ + + + ++ +L+I DE H
Sbjct 1401 GKKLVELTGDYTPNMIA---LQNADIVTTTPEKW-DGISRNWKNRSYVTSVSLLIIDEIH 1456
Query 376 N-TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGL-TASVGVGDAKN 419
+ P ++ + + + + +G +V+GL TA D
Sbjct 1457 LIGELRGPILEVIVSRM-KLISKQTGVNIRVVGLSTAMANAIDLSE 1501
Score = 35.5 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 46/318 (14%), Positives = 106/318 (33%), Gaps = 38/318 (12%)
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
+ +L D + K + + ++ + + T+K +T ++
Sbjct 564 LGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLIIIDEIHLLH 623
Query 531 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 590
E R + LR+ + + L KD +RA D + R
Sbjct 624 EERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRAPASGTHFFDSSYRP 683
Query 591 EEKLQELESVSRDPSNENPK--LEDLCFILQEEYHLNPETITILFVKTRA----LVDALK 644
Q V + K + LC+ E+ L ++FV +R + L
Sbjct 684 VPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEK-SLKEGHQVMIFVHSRKDTVKSAEILS 742
Query 645 NWIEG-NPKLSFLKPGI----------------LTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ + + + S +P L G + + G+ L + + +++ + A
Sbjct 743 DMAKEKHFRFSNEEPSFGAKKEFEKVKSKEIRSLFQHGISVHHAGL-LRSDRNVVEKYFA 801
Query 688 SGDHNILIATSVADEGIDIAQCNLVIL----YEY---------VGNVIKMIQTRGRGRAR 734
+G +L+ T+ G+++ ++I Y + +V+++ GR +
Sbjct 802 NGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFD 861
Query 735 GSKCFLLTSNAGVIEKEQ 752
S L ++ ++
Sbjct 862 TSGEGFLLTSKDKLDHYL 879
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DED1 PE=3 SV=1
Length=627
Score = 112 bits (280), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/305 (18%), Positives = 113/305 (37%), Gaps = 44/305 (14%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
I ++ + L+ + R + + +++V + +A + M + + RI
Sbjct 282 IDNQIKQMRYGCNLLVATPGRLTDLLERRYISLANVKYLV-LDEADRMLDMGFEPQIRRI 340
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ + + R+ A D+LKD+ + +++TQ K+
Sbjct 341 VEGSDMPSVDNRQTLMFSATFPSEIQHLASDFLKDYV-FLSVGRVGSTSENITQ----KI 395
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
+E ++ L + + E +T++FV+T+ D+L +++
Sbjct 396 LYVEDFDKN------------DTLLDLLAASNEGLTLIFVETKRAADSLTDFL------- 436
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
I+ G T + T ++ L AFK +G IL+AT+VA G+DI VI
Sbjct 437 -----IMEGFKATAIHGDRTQGERERALSAFK-TGRATILVATAVAARGLDIPNVTHVIN 490
Query 715 YEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE----------KMM 761
++ + + I GR G + KE +++ E +M
Sbjct 491 FDLPNDIDDYVHRIGRTGRAGNTGVATTFFNRGNKNVAKELVSLLSEANQEVPSFLTTIM 550
Query 762 NDSIL 766
++
Sbjct 551 REASS 555
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/188 (19%), Positives = 69/188 (37%), Gaps = 30/188 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYS-------------PFKPRNYQLELALPAMKGKN 259
Y + P + ++ P SE L P + Y + + G++
Sbjct 142 YDDIPVEASGNDVPEPISEFHSPPLDPLLLDNIKLARFTKPTPVQKYSVPIVAA---GRD 198
Query 260 TIICAPTGCGKT--FVSLLICEHHLKKFPQGQK-------GKV----VFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ E + KV V A + Q
Sbjct 199 LMACAQTGSGKTGGFLFPVLSESFSSGPASTPEAAGNSYIKKVYPTAVILAPTRELATQI 258
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R + + G + + ++Q+ ++++ TP L + L++ I SL+
Sbjct 259 YDEAKKFTYRSWVKPMVVYGGASIDNQIKQMRYGCNLLVATPGRLTDLLERRYI-SLANV 317
Query 367 TLMIFDEC 374
++ DE
Sbjct 318 KYLVLDEA 325
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex
subunit 3 OS=Homo sapiens OX=9606 GN=ASCC3 PE=1 SV=3
Length=2202
Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 75/164 (46%), Gaps = 14/164 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-----GQKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ Q + K+V+ A + + FS
Sbjct 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFS 551
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
+ E G V ++G + +I+ ++ TP+ +V G + I L+
Sbjct 552 RRLEPLGIIVKELTGDM--QLSKSEILRTQM-LVTTPEKWDVVTRKSVGDVALSQIVRLL 608
Query 370 IFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + + I+ L Q S+ + +++GL+A+
Sbjct 609 ILDEVHLLHEDRGPVLESIVARTLRQ--VESTQSMIRILGLSAT 650
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/156 (21%), Positives = 68/156 (44%), Gaps = 14/156 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS-KYFERH 317
N ++ APTG GKT + L K+P K V+ A + ++ + + E+
Sbjct 1344 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERMDDWKVRIEEKL 1400
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G +V ++G ++ + D+I+ TP+ + + + + T++I DE H
Sbjct 1401 GKKVIELTGDVTPDMKS---IAKADLIVTTPEKW-DGVSRSWQNRNYVQQVTILIIDEIH 1456
Query 376 -NTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLT 409
++ P ++ + + S P +++GL+
Sbjct 1457 LLGEERGPVLEVIVSRTN--FISSHTEKPVRIVGLS 1490
Score = 39.0 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 44/331 (13%), Positives = 90/331 (27%), Gaps = 52/331 (16%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK------DLENLSQIQNREFGTQKYE 510
++ + RI +K + +L D K I K E + +
Sbjct 1386 RERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQ 1445
Query 511 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 570
Q + + + I +SH K + +S L +
Sbjct 1446 QVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1505
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + R S P + + +P
Sbjct 1506 KQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIR-------SHSPAKPV 1558
Query 631 ILFV----KTRALVDALKNWIEGNP-----------KLSFLKPGI-------LTGRGKTN 668
++FV +TR L ++ ++ + + G
Sbjct 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAFGIGM 1618
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-----YE-YVGNVI 722
+ G+ +K + + F + +LIATS G++ +LVI+ Y+ +
Sbjct 1619 HHAGLHERDRKTVEELF-VNCKVQVLIATSTLAWGVNFPA-HLVIIKGTEYYDGKTRRYV 1676
Query 723 KM-----IQTRGRGRAR----GSKCFLLTSN 744
+Q GR K +L +
Sbjct 1677 DFPITDVLQMMGRAGRPQFDDQGKAVILVHD 1707
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex
subunit 3 OS=Gallus gallus OX=9031 GN=ascc3 PE=3 SV=2
Length=2211
Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 14/164 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKF-----PQGQKGKVVFFANQIPVYEQQKSVFS 311
+N +ICAPTG GKT +++L H +++ + + K+V+ A + + + FS
Sbjct 501 NENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFS 560
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLSIFTLM 369
K E G V ++G + + + +++ TP+ +V G + + L+
Sbjct 561 KRLEPLGITVKELTGDMQLS---KGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLL 617
Query 370 IFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + + I+ L Q S+ + +++GL+A+
Sbjct 618 ILDEVHLLHEDRGPVLESIVARTLRQ--VESTQSMIRILGLSAT 659
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/156 (21%), Positives = 67/156 (43%), Gaps = 14/156 (9%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS-KYFERH 317
N ++ APTG GKT + L K+P K V+ A + ++ + + E+
Sbjct 1353 NVLLGAPTGSGKTVAAELAIFRVFNKYP---TSKAVYIAPLKALVRERIEDWKVRIEEKL 1409
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDECH 375
G +V ++G ++ + D+I+ TP+ + + + + +++I DE H
Sbjct 1410 GKKVVELTGDVTPDMRA---IAQADLIVTTPEKW-DGVSRSWQNRSYVQKVSILIIDEIH 1465
Query 376 NTSK-QHPYNMIMFNYLDQKLGGSSGPLP-QVIGLT 409
+ P ++ + + S P +V+GL+
Sbjct 1466 LLGDERGPVLEVIVSRTN--FISSHTEKPVRVVGLS 1499
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP2 PE=3
SV=1
Length=552
Score = 111 bits (277), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/402 (15%), Positives = 130/402 (32%), Gaps = 49/402 (12%)
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ--VIGLTASVGVGDAKNTDEALDYIC 428
FDE PY ++ Q + Q + LT +G A
Sbjct 118 FDEA----GFPPY--VLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGK----- 166
Query 429 KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKR 488
+L + A V N + + P ++ + + ++ + ++
Sbjct 167 ----TLSYCLPAIVHINAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTC 222
Query 489 ICKDLENLSQIQNREFGTQ-------KYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+ + QI++ G + + + + + DE R+ +
Sbjct 223 VYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRML--DMGF 280
Query 542 TSHLRKYNDALIISEHARMKDAL--DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
+RK D + M A ++ + L + ++
Sbjct 281 EPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVNIGSLELSASHNITQVVE 340
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
V + + ++ L +++ N E+ ++F T+ + D + ++ +
Sbjct 341 VCTEYEKRDRLVKHLETVME-----NKESKCLIFTGTKRVADDITKFLRQD--------- 386
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G + + +L+ F+ G I++AT VA GID+ N VI Y+Y
Sbjct 387 ---GWPALAIHGDKQQQERDWVLNEFR-QGKSPIMVATDVASRGIDVKGINFVINYDYPS 442
Query 720 N---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
N + I GR +G+ T + ++ + + +E
Sbjct 443 NSEDYVHRIGRTGRAGTKGTAYTYFTEDNRKQARDLLVILRE 484
Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/215 (22%), Positives = 85/215 (40%), Gaps = 11/215 (5%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNL 222
K++W L+ + E+N + E + + + E++ + + + + P N
Sbjct 65 KQDW--DLEKLPQFEKNFYKE----DPAVTERTDEEVTAFRKENQMTLHGDGIPKPVTNF 118
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E PP + + KP Q + A+ G++ I A TG GKT L H+
Sbjct 119 DEAGFPPYVLKEVKQQGFEKPTAIQCQGWPMALTGRDVIGIASTGSGKTLSYCLPAIVHI 178
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + SK+ + R T + G + +
Sbjct 179 NAQPMLSHGDGPIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLAR 238
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ G +L T ++ DE
Sbjct 239 GVEIVIATPGRLLDMLESGK-TNLRRVTYLVLDEA 272
>sp|Q1DJF0|DED1_COCIM ATP-dependent RNA helicase DED1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DED1 PE=3 SV=2
Length=665
Score = 112 bits (279), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/316 (17%), Positives = 111/316 (35%), Gaps = 40/316 (13%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E + Y+ + R + Q+ R + L L +L +
Sbjct 285 YDEARKFAYR--SWVRPCVVYGGADIGSQLRQIERGCDLLVAT-PGRLVDLIERGRISLC 341
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
KY + + +A + M + + RI + + + R+ A D
Sbjct 342 NIKY----LVLDEADRMLDMGFEPQIRRIVEGEDMPPVNGRQTLMFSATFPRDIQMLARD 397
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD+ + +++TQ+ E D + +L + H +
Sbjct 398 FLKDYV-FLSVGRVGSTSENITQKVE--------YVEDADKRS--------VLLDILHTH 440
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ + D+L ++ T + T ++ L+ F
Sbjct 441 GTGLTLIFVETKRMADSLSEFLINQ------------NFPATAIHGDRTQRERERALEYF 488
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ +G IL+AT+VA G+DI V+ Y+ + + I GR G
Sbjct 489 R-NGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGLSTAFFN 547
Query 743 SNAGVIEKEQINMYKE 758
+ ++ I + KE
Sbjct 548 RGNRGVVRDLIELLKE 563
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 71/205 (35%), Gaps = 33/205 (16%)
Query 187 IVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+ + D+ + + T + P +L N + + T + Y
Sbjct 163 NYDDIPVEASGHDVPEPVTT------FTNPPLDDHLISNIKLATYKTPTP------VQKY 210
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-------------KKFPQGQKGKV 293
+ + M G++ + CA TG GKT L +F G++ K
Sbjct 211 SIPIV---MGGRDLMACAQTGSGKTGGFLFPILSQAFKNGPSAVPTQNANQFSYGRQRKA 267
Query 294 ----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
+ A + Q K+ R R + G + QI D+++ TP
Sbjct 268 YPTSLILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPG 327
Query 350 ILVNNLKKGTIPSLSIFTLMIFDEC 374
LV+ +++G I SL ++ DE
Sbjct 328 RLVDLIERGRI-SLCNIKYLVLDEA 351
>sp|P0CQ72|FAL1_CRYNJ ATP-dependent RNA helicase FAL1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=FAL1 PE=3 SV=1
Length=396
Score = 109 bits (271), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/197 (21%), Positives = 72/197 (37%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E+ K + LC + Y
Sbjct 206 LPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLC----DLYDTLT 261
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F TR VD L + ++ + M + I+ F+
Sbjct 262 ITQAVIFCNTRRKVDWLTEKMRE--------ANFTV----SSMHGEMVQKERDAIMAEFR 309
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G +LI T V GID+ Q +LVI Y+ N + I GR +G +T
Sbjct 310 -GGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTV 368
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 369 DDVRILRDIEQYYSTQI 385
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 51/132 (39%), Gaps = 3/132 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q +P ++G++ I A +G GKT + + ++ + + +
Sbjct 45 KPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDT--NLRETQALVLSPTRE 102
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q ++V + G T+ + ++ ++ TP + + +++ +
Sbjct 103 LAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNL- 161
Query 362 SLSIFTLMIFDE 373
++I DE
Sbjct 162 RTKDIKMLILDE 173
>sp|P0CQ73|FAL1_CRYNB ATP-dependent RNA helicase FAL1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=FAL1 PE=3 SV=1
Length=396
Score = 109 bits (271), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/197 (21%), Positives = 72/197 (37%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E+ K + LC + Y
Sbjct 206 LPHDVLEMTTKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLC----DLYDTLT 261
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F TR VD L + ++ + M + I+ F+
Sbjct 262 ITQAVIFCNTRRKVDWLTEKMRE--------ANFTV----SSMHGEMVQKERDAIMAEFR 309
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G +LI T V GID+ Q +LVI Y+ N + I GR +G +T
Sbjct 310 -GGQSRVLITTDVWARGIDVQQVSLVINYDLPTSRENYLHRIGRSGRFGRKGVAINFVTV 368
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 369 DDVRILRDIEQYYSTQI 385
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 51/132 (39%), Gaps = 3/132 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q +P ++G++ I A +G GKT + + ++ + + +
Sbjct 45 KPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDT--NLRETQALVLSPTRE 102
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q ++V + G T+ + ++ ++ TP + + +++ +
Sbjct 103 LAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNL- 161
Query 362 SLSIFTLMIFDE 373
++I DE
Sbjct 162 RTKDIKMLILDE 173
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17
OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Length=650
Score = 111 bits (278), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/276 (20%), Positives = 91/276 (33%), Gaps = 34/276 (12%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +RK D + M A + + + Q E
Sbjct 254 MGFEPQIRKIVDQIRPDRQTLMWSATWPKE--VRQLAEDFLRDYTQINVGNLELSANHNI 311
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
D E+ K L L EE E TI+FV+T+ D L + +
Sbjct 312 LQIVDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD-------- 362
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y
Sbjct 363 ----GWPAMCIHGDKSQPERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYP 417
Query 719 GNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ + GR R +G+ T +E I + +E N +I
Sbjct 418 NSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA--NQAIN--------- 466
Query 776 FREKILHIQTHE--KFIRDSQEKPKPVPDKENKKLL 809
K++ + H + + + N L+
Sbjct 467 --PKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLM 500
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (42%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
+P Q + A+ G++ + A TG GKT LL H+ P +G + A
Sbjct 114 EPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAP 173
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + V Y + + T I G + + + +I I TP L++ L+ G
Sbjct 174 TRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 233
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 234 K-TNLRRCTYLVLDEA 248
>sp|Q9VHS8|IF4A3_DROME Eukaryotic initiation factor 4A-III OS=Drosophila
melanogaster OX=7227 GN=CG7483 PE=1 SV=1
Length=399
Score = 108 bits (270), Expect = 6e-24, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + L +R E L+ ++ E K + LC + Y
Sbjct 209 LPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 264
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M + I+ F+
Sbjct 265 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERDEIMKEFR 312
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
A G +LI T V GID+ Q +LVI Y+ N I I GR +G + S
Sbjct 313 A-GQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 371
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 372 DDIRILRDIEQYYSTQI 388
Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/139 (18%), Positives = 51/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q P +KG++ I A +G GKT + L + + +V+
Sbjct 42 YAYGFEKPSAIQQRSITPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLR--ETQVLC 99
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + Q + V + + G T + ++ I+ TP + + +
Sbjct 100 LSPTRELAVQIQKVILALGDMMNVQCHVCIGGTNLGEDIRKLDYGQHIVSGTPGRVFDMI 159
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+ + +++ DE
Sbjct 160 KR-RVLRTRAIKMLVLDEA 177
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17
OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Length=729
Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats.
Identities = 55/276 (20%), Positives = 91/276 (33%), Gaps = 34/276 (12%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +RK D + M A + + + Q E
Sbjct 333 MGFEPQIRKIVDQIRPDRQTLMWSATWPKE--VRQLAEDFLRDYTQINVGNLELSANHNI 390
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
D E+ K L L EE E TI+FV+T+ D L + +
Sbjct 391 LQIVDVCMESEKDHKLIQ-LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRD-------- 441
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + P + +L+ F+ SG ILIAT VA G+D+ VI Y+Y
Sbjct 442 ----GWPAMCIHGDKSQPERDWVLNEFR-SGKAPILIATDVASRGLDVEDVKFVINYDYP 496
Query 719 GNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ + GR R +G+ T +E I + +E N +I
Sbjct 497 NSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEA--NQAIN--------- 545
Query 776 FREKILHIQTHE--KFIRDSQEKPKPVPDKENKKLL 809
K++ + H + + + N L+
Sbjct 546 --PKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLM 579
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 57/136 (42%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
+P Q + A+ G++ + A TG GKT LL H+ P +G + A
Sbjct 193 EPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAP 252
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + V Y + + T I G + + + +I I TP L++ L+ G
Sbjct 253 TRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESG 312
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 313 K-TNLRRCTYLVLDEA 327
>sp|Q94A52|RH2_ARATH Eukaryotic initiation factor 4A-III homolog
OS=Arabidopsis thaliana OX=3702 GN=EIF4A3 PE=1 SV=2
Length=408
Score = 108 bits (270), Expect = 8e-24, Method: Composition-based stats.
Identities = 44/197 (22%), Positives = 76/197 (39%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + L +R E L+ ++ E K + LC + Y
Sbjct 218 LPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLC----DLYDTLT 273
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + + ++ + M + I++ F+
Sbjct 274 ITQAVIFCNTKRKVDYLSEKMRSH--------NFTV----SSMHGDMPQKERDAIMNEFR 321
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SGD +LI T V GID+ Q +LVI Y+ N I I GR +G + S
Sbjct 322 -SGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 380
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 381 DDIKILRDIEQYYSTQI 397
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/133 (17%), Positives = 53/133 (40%), Gaps = 5/133 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q +P ++G++ I A +G GKT ++L +C+ ++ + + +
Sbjct 57 KPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQ---VVDTSSREVQALILSPTR 113
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + G + + ++ ++ TP + + +K+ ++
Sbjct 114 ELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSL 173
Query 361 PSLSIFTLMIFDE 373
L+I DE
Sbjct 174 -RTRAIKLLILDE 185
>sp|Q75B50|DED1_EREGS ATP-dependent RNA helicase DED1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DED1 PE=3 SV=2
Length=623
Score = 111 bits (276), Expect = 8e-24, Method: Composition-based stats.
Identities = 58/305 (19%), Positives = 114/305 (37%), Gaps = 34/305 (11%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
I Q +R+ E I L+ + R + +++V + +A + M + + I
Sbjct 268 IRQQIRELERGCDLIVATPGRLNDLLERGKISLCSVKYLV-LDEADRMLDMGFEPQIRHI 326
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ + T R+ A D+LKD+ + +++TQ K+
Sbjct 327 VEGCDMPTVENRQTLMFSATFPTDIQHLAADFLKDYI-FLSVGRVGSTSENITQ----KV 381
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
+E + D +L + + +T++FV+T+ + DAL +++
Sbjct 382 LHVEDI------------DKRSVLLDLLAASDGGLTLVFVETKRMADALTDFL------- 422
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
I+ T + T ++ L F+ +G N+L+AT+VA G+DI VI
Sbjct 423 -----IMQNLSATAIHGDRTQAERERALAFFR-TGRANVLVATAVAARGLDIPNVTHVIN 476
Query 715 YEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
Y+ + + I GR G + KE +++ +E Q
Sbjct 477 YDLPSDIDDYVHRIGRTGRAGNTGLATAFFNRGNKNVVKELVDILEEANQEVPSFLSQIA 536
Query 772 DEAVF 776
E +
Sbjct 537 KEMSY 541
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/187 (19%), Positives = 66/187 (35%), Gaps = 29/187 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNL-------------YSPFKPRNYQLELALPAMKGKN 259
Y + P + + P +E + L P + Y + + KG++
Sbjct 129 YDDIPVDASGEDVPDPITEFTSPPLDELLLENIKLARFTKPTPVQKYSVPIV---AKGRD 185
Query 260 TIICAPTGCGKT--FVSLLICEHHLK----------KFPQGQKGKVVFFANQIPVYEQQK 307
+ CA TG GKT F+ ++ + + + V A + Q
Sbjct 186 LMACAQTGSGKTGGFLFPVLSQSFSNGPASTPDESGYYMRKAYPTAVVLAPTRELATQIF 245
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R + + G + ++ D+I+ TP L + L++G I SL
Sbjct 246 DEAKKFTYRSWVKPCVVYGGADIRQQIRELERGCDLIVATPGRLNDLLERGKI-SLCSVK 304
Query 368 LMIFDEC 374
++ DE
Sbjct 305 YLVLDEA 311
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=brr2
PE=1 SV=1
Length=2176
Score = 112 bits (279), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQQKSVF 310
+N ++CAPTG GKT V++L + L+K + Q K+V+ A + ++ + F
Sbjct 535 DENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNF 594
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLM 369
SK + RV ++G + +Q + II+ TP+ + K + +++ L+
Sbjct 595 SKRLTPYNIRVAELTGDSQ---LTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLV 651
Query 370 IFDECHNTSK-QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I DE H + P + + + + + +++GL+A+
Sbjct 652 IIDEVHLLHDERGPVLESIVARIFRHQEETLEQV-RLVGLSAT 693
Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 70/424 (17%), Positives = 140/424 (33%), Gaps = 60/424 (14%)
Query 264 APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
AP G GKT + L HH Q G V+ A + +++ + F G
Sbjct 1387 APNGSGKTVCAELALLHHW---SQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLGDG-KV 1442
Query 324 ISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQH- 381
+ T E ++++ D+I TP + K+ ++ S+ I DE +
Sbjct 1443 LVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYG 1502
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
P I+ + + + + +V+GL+ SV L L S
Sbjct 1503 PLYEIVISRI-RYMAVQLEKNIRVVGLSVSVANA------------RDLGEWLGTSPQCI 1549
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
+ ++ +P ++S F ++ + +K I + L+N +
Sbjct 1550 FNFSPKD------RPNPLTIHLQSFSITHFPSLMLAM-------SKPIYRSLKNFISQRK 1596
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
+ + + F M D+DE N+A E A ++
Sbjct 1597 STIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLME-----------NEAFNKVEDAALQ 1645
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
+L + + S + ++ I Q L + L ++ SRD + ++ +
Sbjct 1646 QSLKHGIAYISEITSSNDQNIVQYL---YRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQ 1702
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
Y+ + R + + ++ L G + +Q MT+ +K
Sbjct 1703 YYDGK--------EHRYIDYPISELLQ------MLGFTASIGSSELSQVILMTVTTKKEY 1748
Query 682 LDAF 685
F
Sbjct 1749 YKKF 1752
>sp|A1CH78|DED1_ASPCL ATP-dependent RNA helicase ded1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=ded1 PE=3 SV=1
Length=681
Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/151 (22%), Positives = 61/151 (40%), Gaps = 16/151 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
++ +L + +T++FV+T+ + DAL +++ T +
Sbjct 435 VDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLINQR------------FPATAIH 482
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQT 727
T ++ L+ F+ S IL+AT+VA G+DI VI Y+ + + I
Sbjct 483 GDRTQRERERALEMFR-SARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGR 541
Query 728 RGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G + +E I++ KE
Sbjct 542 TGRAGNTGIATAFFNRGNRGVVRELIDLLKE 572
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 25/182 (14%)
Query 214 QEDPECQNLSENSCPPSEVSDTNLYSPFK----PRNYQLELALPAMKGKNTIICAPTGCG 269
Q+ PE N N + + ++ + Y + + M G++ + CA TG G
Sbjct 182 QDVPEPVNAFTNPPLDDHLISNIKLARYQTPTPVQKYSIPIV---MNGRDLMACAQTGSG 238
Query 270 KTFVSLLICEHHL-----KKFPQGQKGKVVF------------FANQIPVYEQQKSVFSK 312
KT L P G++ + A + Q K
Sbjct 239 KTGGFLFPILSQAFQKGPSAVPAQASGQMSYGRQRKAYPTSLILAPTRELVSQIFDEARK 298
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ R R + G + QI D+++ TP LV+ +++G I ++ ++ D
Sbjct 299 FAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVN-INYLVLD 357
Query 373 EC 374
E
Sbjct 358 EA 359
>sp|P41380|IF4A3_NICPL Eukaryotic initiation factor 4A-3 OS=Nicotiana
plumbaginifolia OX=4092 PE=2 SV=1
Length=391
Score = 107 bits (267), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/197 (21%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + + L +R E L+ ++ E K + LC + Y
Sbjct 201 LPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLC----DLYDTLT 256
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + + N ++ + M + I+ F+
Sbjct 257 ITQAVIFCNTKRKVDWLTSKMREN--------NFTV----SSMHGDMPQKERDAIMAEFR 304
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
G +LI T V G+D+ Q +LVI Y+ N I I GR +G + S
Sbjct 305 -GGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKS 363
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 364 DDIKILRDIEQYYSTQI 380
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/133 (19%), Positives = 54/133 (41%), Gaps = 5/133 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP Q LP + G++ I A +G GKT ++L +C+ + + + + +
Sbjct 40 KPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQ---IVDTKSSEVQALILSPTR 96
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + V + + G + + ++ ++ TP + + +K+ T+
Sbjct 97 ELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTL 156
Query 361 PSLSIFTLMIFDE 373
L+I DE
Sbjct 157 -RTRGIKLLILDE 168
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5
OS=Pongo abelii OX=9601 GN=DDX5 PE=2 SV=1
Length=614
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 80/236 (34%), Gaps = 33/236 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA------LDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +DF + +E +
Sbjct 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ 315
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+ V K E L L EE E TI+FV+T+ D L + +
Sbjct 316 IVDVCHDV--------EKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD-- 364
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + + +L+ FK G ILIAT VA G+D+ V
Sbjct 365 ----------GWPAMGIHGDKSQQERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFV 413
Query 713 ILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
I Y+Y + I GR R G+ T N + I++ +E N +I
Sbjct 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA--NQAI 467
Score = 66.3 bits (160), Expect = 7e-10, Method: Composition-based stats.
Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 34/373 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G + + A TG GKT LL H+ P +G + A + +Q + V
Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++Y + T I G + + + +I I TP L++ L+ G +L T ++
Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLV 246
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEAL-DYICK 429
DE + F +K+ P Q + +A+ + ++ L DYI
Sbjct 247 LDEADRMLD------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+L+ S HN+ ++ V + +K + + R+ ++ +R
Sbjct 301 NIGALELS----ANHNILQIVDVCHDVEKDEKLI--RLMEEIMSEKENKTIVFVETKRRC 354
Query 490 CKDLENLSQIQNREFG-----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
+ + + G +Q+ W++ K + D SR
Sbjct 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG---------- 404
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
D + + + DY+ R+ T +++ +L SV R+
Sbjct 405 -LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query 605 SN-ENPKLEDLCF 616
+ NPKL L
Sbjct 464 NQAINPKLLQLVE 476
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5
OS=Pan troglodytes OX=9598 GN=DDX5 PE=2 SV=1
Length=614
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 80/236 (34%), Gaps = 33/236 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA------LDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +DF + +E +
Sbjct 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ 315
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+ V K E L L EE E TI+FV+T+ D L + +
Sbjct 316 IVDVCHDV--------EKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD-- 364
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + + +L+ FK G ILIAT VA G+D+ V
Sbjct 365 ----------GWPAMGIHGDKSQQERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFV 413
Query 713 ILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
I Y+Y + I GR R G+ T N + I++ +E N +I
Sbjct 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA--NQAI 467
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 68/373 (18%), Positives = 131/373 (35%), Gaps = 34/373 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G + + A TG GKT LL H+ P +G + A + +Q + V
Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++Y + T I G + + + + I TP L++ L+ G +L T ++
Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGK-TNLRRTTYLV 246
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEAL-DYICK 429
DE + F +K+ P Q + +A+ + ++ L DYI
Sbjct 247 LDEADRMLD------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+L+ S HN+ ++ V + +K + + R+ ++ +R
Sbjct 301 NIGALELS----ANHNILQIVDVCHDVEKDEKLI--RLMEEIMSEKENKTIVFVETKRRC 354
Query 490 CKDLENLSQIQNREFG-----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
+ + + G +Q+ W++ K + D SR
Sbjct 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG---------- 404
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
D + + + DY+ R+ T +++ +L SV R+
Sbjct 405 -LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query 605 SN-ENPKLEDLCF 616
+ NPKL L
Sbjct 464 NQAINPKLLQLVE 476
>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5
OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2
Length=614
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 80/236 (34%), Gaps = 33/236 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA------LDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +DF + +E +
Sbjct 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ 315
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+ V K E L L EE E TI+FV+T+ D L + +
Sbjct 316 IVDVCHDV--------EKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD-- 364
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + + +L+ FK G ILIAT VA G+D+ V
Sbjct 365 ----------GWPAMGIHGDKSQQERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFV 413
Query 713 ILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
I Y+Y + I GR R G+ T N + I++ +E N +I
Sbjct 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA--NQAI 467
Score = 66.3 bits (160), Expect = 7e-10, Method: Composition-based stats.
Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 34/373 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G + + A TG GKT LL H+ P +G + A + +Q + V
Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++Y + T I G + + + +I I TP L++ L+ G +L T ++
Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLV 246
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEAL-DYICK 429
DE + F +K+ P Q + +A+ + ++ L DYI
Sbjct 247 LDEADRMLD------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+L+ S HN+ ++ V + +K + + R+ ++ +R
Sbjct 301 NIGALELS----ANHNILQIVDVCHDVEKDEKLI--RLMEEIMSEKENKTIVFVETKRRC 354
Query 490 CKDLENLSQIQNREFG-----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
+ + + G +Q+ W++ K + D SR
Sbjct 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG---------- 404
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
D + + + DY+ R+ T +++ +L SV R+
Sbjct 405 -LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query 605 SN-ENPKLEDLCF 616
+ NPKL L
Sbjct 464 NQAINPKLLQLVE 476
>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5
OS=Homo sapiens OX=9606 GN=DDX5 PE=1 SV=1
Length=614
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 80/236 (34%), Gaps = 33/236 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA------LDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +DF + +E +
Sbjct 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ 315
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+ V K E L L EE E TI+FV+T+ D L + +
Sbjct 316 IVDVCHDV--------EKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD-- 364
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + + +L+ FK G ILIAT VA G+D+ V
Sbjct 365 ----------GWPAMGIHGDKSQQERDWVLNEFK-HGKAPILIATDVASRGLDVEDVKFV 413
Query 713 ILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
I Y+Y + I GR R G+ T N + I++ +E N +I
Sbjct 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA--NQAI 467
Score = 66.3 bits (160), Expect = 7e-10, Method: Composition-based stats.
Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 34/373 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G + + A TG GKT LL H+ P +G + A + +Q + V
Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++Y + T I G + + + +I I TP L++ L+ G +L T ++
Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLV 246
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEAL-DYICK 429
DE + F +K+ P Q + +A+ + ++ L DYI
Sbjct 247 LDEADRMLD------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+L+ S HN+ ++ V + +K + + R+ ++ +R
Sbjct 301 NIGALELS----ANHNILQIVDVCHDVEKDEKLI--RLMEEIMSEKENKTIVFVETKRRC 354
Query 490 CKDLENLSQIQNREFG-----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
+ + + G +Q+ W++ K + D SR
Sbjct 355 DELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG---------- 404
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
D + + + DY+ R+ T +++ +L SV R+
Sbjct 405 -LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query 605 SN-ENPKLEDLCF 616
+ NPKL L
Sbjct 464 NQAINPKLLQLVE 476
>sp|Q8TFK8|DED1_CANGA ATP-dependent RNA helicase DED1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DED1 PE=3 SV=1
Length=617
Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/144 (24%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + + + +T++FV+T+ + D L +++ I+ T + +
Sbjct 393 LLDLLAASNDNLTLIFVETKRMADQLTDFL------------IMQNFSATAIHGDRSQAE 440
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRAR 734
++ L AF+ SG NIL+AT+VA G+DI VI Y+ + + I GR
Sbjct 441 RERALAAFR-SGRANILVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNT 499
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G + I K + +E
Sbjct 500 GVATAFFNRDNNNIVKGLYEILEE 523
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/187 (20%), Positives = 73/187 (39%), Gaps = 23/187 (12%)
Query 207 SDIQIFYQEDPECQNLSENSCPP--SEVSDTNLYSPFK----PRNYQLELALPAMKGKNT 260
DI + + + ++E + PP S + + + F + Y + + KG++
Sbjct 129 DDIPVEASGEDVPEAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIV---SKGRDL 185
Query 261 IICAPTGCGKT--FVSLLICEHHLKK-----------FPQGQKGKVVFFANQIPVYEQQK 307
+ CA TG GKT F+ ++ E L + + V A + Q
Sbjct 186 MACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELATQIF 245
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R + + G + ++ D+++ TP L + L++G + SLS
Sbjct 246 DEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKV-SLSNVK 304
Query 368 LMIFDEC 374
++ DE
Sbjct 305 YLVLDEA 311
>sp|Q0DB53|RH52A_ORYSJ DEAD-box ATP-dependent RNA helicase 52A
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0602400 PE=2
SV=2
Length=602
Score = 109 bits (272), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/368 (18%), Positives = 132/368 (36%), Gaps = 46/368 (13%)
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
LP V GL A+ G G + + +L + E Q+ + +KF
Sbjct 140 LPVVSGLVAAGGSGIGHRERSSFNRAAAKPRAL------VLAPTRELAAQINEEAKKFSF 193
Query 462 KVESRISDKFKYI-IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ R+ + + +RD E A + L + R + + +++V + +A
Sbjct 194 QTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLV-MDEAD 252
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD--FFSNVRAAG 578
+ M + + +I + + + +R+ + A D+L + F + R
Sbjct 253 RMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGS 312
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE-----YHLNPETITILF 633
++ + + K L +LQ + + +T++F
Sbjct 313 STDLIMQKVELLSDG---------------EKRGYLLDLLQRQSVGVANSKLQQPLTLVF 357
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
V+T+ D+L+ W+ G T + T ++ L +FK +G I
Sbjct 358 VETKREADSLRYWLYSK------------GFPATAIHGDRTQQERESALRSFK-TGLTPI 404
Query 694 LIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
++AT VA G+D+ VI Y+ + + I GR GS T + + K
Sbjct 405 MVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAK 464
Query 751 EQINMYKE 758
+ + E
Sbjct 465 GLLELMTE 472
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--------------KK 284
SP + Y + + A+ G++ + CA TG GKT L L
Sbjct 106 SPTPVQRYSMPI---ALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSF 162
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + A + Q K+ + G RV G T + + DI+
Sbjct 163 NRAAAKPRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADIL 222
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP LV+ +++ + SL ++ DE
Sbjct 223 VATPGRLVDMVERSKV-SLEAIKYLVMDEA 251
>sp|Q55D61|IF4A_DICDI Eukaryotic initiation factor 4A OS=Dictyostelium
discoideum OX=44689 GN=tifA PE=3 SV=1
Length=405
Score = 107 bits (266), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/191 (21%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L +R E L ++ E+ K LC I Y T ++
Sbjct 221 SMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDI----YDSLTITQAVI 276
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F T+ VD L + + + M ++ I+ +F+ SG++
Sbjct 277 FCNTKKKVDQLTEQMRD--------ANFTV----ASMHGDMVQKEREEIIKSFR-SGENR 323
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N I I GR +G + ++ I
Sbjct 324 VLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKNSDIRIL 383
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 384 RDIEQFYSTQI 394
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/216 (19%), Positives = 87/216 (40%), Gaps = 21/216 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFAN 298
KP Q LP +KG++TI A +G GKT + L C + +V+ +
Sbjct 54 KPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVE-----VNVRSPQVLILSP 108
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + V E +V G + V+++ I+ TP +++ + +
Sbjct 109 TRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRK 168
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVG 415
++P+ +MI DE + ++ Q++ LP Q++ ++A++
Sbjct 169 SLPTRH-IKMMILDEA---------DEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQD 218
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
T++ + ++ D + +K +E+
Sbjct 219 VVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEK 254
>sp|Q91VC3|IF4A3_MOUSE Eukaryotic initiation factor 4A-III OS=Mus
musculus OX=10090 GN=Eif4a3 PE=1 SV=3
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 50/139 (36%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +KG++ I + +G GKT + L Q ++ + +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLD--IQVRETQALI 111
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + + + G T + ++ ++ TP + + +
Sbjct 112 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 171
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 172 RRRSL-RTRAIKMLVLDEA 189
>sp|Q4P184|FAL1_USTMA ATP-dependent RNA helicase FAL1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=FAL1 PE=3 SV=1
Length=397
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 72/191 (38%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + + L +R E L+ ++ E K + LC + Y T ++
Sbjct 213 EMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLC----DLYDTLTITQAVI 268
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L ++ N ++ + M + ++ F+ G
Sbjct 269 FCNTRRKVDWLSAKMKEN--------NFQV----SSMHGEMQQKERDEVMAEFR-QGSSR 315
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T V GIDIA +LVI Y+ N I I GR +G +T +
Sbjct 316 VLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTVDDVRTL 375
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 376 RDIEQFYSTQI 386
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q LP ++G++ I A +G GKT + + + + + + +
Sbjct 46 KPSAIQQRAILPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTTLR--ETQALVLSPTRE 103
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q +SV + + G T+ + ++ I+ TP + + +++ +
Sbjct 104 LAIQIQSVVLALGDYLNVQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHL- 162
Query 362 SLSIFTLMIFDE 373
++I DE
Sbjct 163 RTKNIKMLILDE 174
>sp|Q3B8Q2|IF4A3_RAT Eukaryotic initiation factor 4A-III OS=Rattus
norvegicus OX=10116 GN=Eif4a3 PE=1 SV=1
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 169 DMIRRRSL-RTRAIKMLVLDEA 189
>sp|A6M931|IF4A3_PIG Eukaryotic initiation factor 4A-III OS=Sus
scrofa OX=9823 GN=EIF4A3 PE=2 SV=1
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 169 DMIRRRSL-RTRAIKMLVLDEA 189
>sp|Q4R3Q1|IF4A3_MACFA Eukaryotic initiation factor 4A-III OS=Macaca
fascicularis OX=9541 GN=EIF4A3 PE=2 SV=3
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 109 ALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 169 DMIRRRSL-RTRAIKMLVLDEA 189
>sp|P38919|IF4A3_HUMAN Eukaryotic initiation factor 4A-III OS=Homo
sapiens OX=9606 GN=EIF4A3 PE=1 SV=4
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 169 DMIRRRSL-RTRAIKMLVLDEA 189
>sp|Q2NL22|IF4A3_BOVIN Eukaryotic initiation factor 4A-III OS=Bos
taurus OX=9913 GN=EIF4A3 PE=2 SV=3
Length=411
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 221 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 276
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 277 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 324
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 325 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 383
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 384 DDIRILRDIEQYYSTQI 400
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 54 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 109 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 168
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 169 DMIRRRSL-RTRAIKMLVLDEA 189
>sp|B7ZTW1|IF4A3_XENTR Eukaryotic initiation factor 4A-III OS=Xenopus
tropicalis OX=8364 GN=eif4a3 PE=2 SV=1
Length=415
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 225 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 280
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 281 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 328
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 329 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 387
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 388 DDIRILRDIEQYYSTQI 404
Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/139 (16%), Positives = 51/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +KG++ I + +G GKT + L Q ++ + +
Sbjct 58 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD--IQVRETQALI 115
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V + + G T + ++ ++ TP + + +
Sbjct 116 LAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 175
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 176 RRRSL-RTRAIKMLVLDEA 193
>sp|Q0UAT0|FAL1_PHANO ATP-dependent RNA helicase FAL1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=FAL1 PE=3 SV=3
Length=374
Score = 106 bits (264), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 72/191 (38%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R E L+ L+ E K + LC + Y T ++
Sbjct 189 EMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEEWKFDTLC----DLYDTLTITQAVI 244
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + ++ + M + I+ F+ + +
Sbjct 245 FCNTRRKVDWLTDKMRE--------ANFTV----SSMHGDMPQRERDSIMQDFRQA-NSR 291
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +T I
Sbjct 292 VLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTQEDVRIL 351
Query 750 KEQINMYKEKM 760
++ Y ++
Sbjct 352 RDIELYYSTQI 362
>sp|B5DG42|IF4A3_SALSA Eukaryotic initiation factor 4A-III OS=Salmo
salar OX=8030 GN=eif4a3 PE=2 SV=1
Length=406
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 216 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 271
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 272 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 319
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 320 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 378
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 379 DDIRILRDIEQYYSTQI 395
Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/139 (16%), Positives = 51/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +KG++ I + +G GKT + L Q ++ + +
Sbjct 49 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD--IQVRETQALI 106
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V + + G T + ++ ++ TP + + +
Sbjct 107 LAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 166
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 167 RRRSL-RTRAIKMLVLDEA 184
>sp|O42226|I4A3B_XENLA Eukaryotic initiation factor 4A-III-B OS=Xenopus
laevis OX=8355 GN=eif4a3-b PE=2 SV=1
Length=414
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 224 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 279
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 280 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 327
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 328 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 386
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 387 DDIRILRDIEQYYSTQI 403
Score = 50.9 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/139 (16%), Positives = 52/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q + +KG++ I + +G GKT + L Q ++ + +
Sbjct 57 YAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD--IQIRETQALI 114
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V + + G T + ++ ++ TP + + +
Sbjct 115 LAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 174
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 175 RRRSL-RTRAIKMLVLDEA 192
>sp|Q6CB69|DED1_YARLI ATP-dependent RNA helicase DED1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DED1 PE=3
SV=1
Length=618
Score = 109 bits (271), Expect = 4e-23, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 16/147 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + + +T++FV+T+ D L + ++ T+ + +
Sbjct 406 ISALLDILSAAGKGLTLVFVETKRGADYLCDVLQSE------------DFPATSIHGDRS 453
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
++ L+ F+ G IL+AT+VA G+DI V+ Y+ + + I GR
Sbjct 454 QRDRERALEMFR-DGTTPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRA 512
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKE 758
G I +E I++ KE
Sbjct 513 GNTGIATAFFNRGNKGIVRELIDILKE 539
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 35/188 (19%), Positives = 70/188 (37%), Gaps = 24/188 (13%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSE---VSDTNLYSPFKP---RNYQLELALPAMKGKNT 260
+I + + + ++ + PP E +++ L KP + Y + + G++
Sbjct 144 DEIPVEATGNDVPEPINAFTSPPLEEHLLTNIKLARYNKPTPVQKYSVPIVAA---GRDL 200
Query 261 IICAPTGCGKT--FVSLLICEHHLKK---FPQGQKGK---------VVFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ + PQ + + A + Q
Sbjct 201 MACAQTGSGKTGGFLFPVLSQSFFHGPSPTPQPTGPRHMHKKAYPTALVLAPTRELVSQI 260
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R R + G + I D+++ P LV+ + +G + SL
Sbjct 261 YDEAKKFAYRSWVRPCVVYGGADIGEQMRNIERGCDLLVAAPGRLVDLIDRGKV-SLENI 319
Query 367 TLMIFDEC 374
++ DE
Sbjct 320 KYLVLDEA 327
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP2 PE=3 SV=1
Length=544
Score = 108 bits (269), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 86/246 (35%), Gaps = 31/246 (13%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +D+ ++ +E + +
Sbjct 272 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQIGSLELAASHNITQ 331
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ + K + L L + + E+ ++F T+ D + +++ +
Sbjct 332 LVEVVSEF--------EKRDRLVKHL-DTASQDKESKILIFASTKRTCDEITSYLRQD-- 380
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L+ F+ +G+ I++AT VA GID+ N V
Sbjct 381 ----------GWPALAIHGDKDQRERDWVLNEFR-TGNSPIMVATDVAARGIDVKGINFV 429
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
+ Y+ GN + I GR A G+ T + + I++ +E N ++
Sbjct 430 VNYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEDNKSLGASLISIMREAKQNIPEELMK 489
Query 770 TWDEAV 775
Sbjct 490 YDRRPR 495
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 88/215 (41%), Gaps = 9/215 (4%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K +W L E+N + E + +++ +++ + S++ I + P+
Sbjct 57 KPDWESELPNLPPFEKNFYVE----HEVVRNRSDQEVAQFRKESEMTITGHDIPKPITTF 112
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P V F KP + Q + A+ G++ + A TG GKT L H+
Sbjct 113 DEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHI 172
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + SK+ + R T + G + +++
Sbjct 173 NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIR 232
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ G +L T ++ DE
Sbjct 233 GAEIVIATPGRLIDMLEAGK-TNLKRVTYLVLDEA 266
>sp|Q5VNM3|IF43A_ORYSJ Eukaryotic initiation factor 4A-III homolog
A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1
SV=1
Length=404
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + L +R E L+ ++ E K + LC + Y
Sbjct 214 LPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLC----DLYDTLT 269
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + N + G M + I+ F+
Sbjct 270 ITQAVIFCNTKRKVDWLTERMRSN----NFTVSAMHG--------DMPQKERDAIMGEFR 317
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI T V G+D+ Q +LVI Y+ N I I GR +G +
Sbjct 318 -SGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKK 376
Query 744 NAGVIEKEQINMYKEKM 760
I ++ Y ++
Sbjct 377 EDIRILRDIEQYYSTQI 393
Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 82/212 (39%), Gaps = 24/212 (11%)
Query 218 ECQNLSENSCPPSEVSDT--------------NLYSPFKPRNYQLELALPAMKGKNTIIC 263
+ +NL+ + P EV + Y KP Q LP + G++ I
Sbjct 15 DDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQ 74
Query 264 APTGCGKT-FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVT 322
A +G GKT +SL +C+ ++ + + + + Q + V + +V
Sbjct 75 AQSGTGKTSMISLSVCQ---IVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 382
G + + ++ ++ TP + + +K+ T+ L+I DE +
Sbjct 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTL-RTRAIKLLILDEADEMLGRGF 190
Query 383 YNMI--MFNYLDQKL--GGSSGPLPQ-VIGLT 409
+ I ++ YL +L S LP ++ +T
Sbjct 191 KDQIYDVYRYLPPELQVCLISATLPHEILEMT 222
>sp|B5FZY7|IF4A3_TAEGU Eukaryotic initiation factor 4A-III OS=Taeniopygia
guttata OX=59729 GN=EIF4A3 PE=2 SV=1
Length=410
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 220 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 275
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 276 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 323
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 324 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 382
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 383 DDIRILRDIEQYYSTQI 399
Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 53 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 107
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 167
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 168 DMIRRRSL-RTRAIKMLVLDEA 188
>sp|Q10055|FAL1_SCHPO ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif412
PE=1 SV=1
Length=394
Score = 106 bits (264), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 68/187 (36%), Gaps = 20/187 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + L +R E L+ L+ E K + LC + Y T ++
Sbjct 210 EMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLC----DLYDTLTITQAVI 265
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F +R VD L + T+ + M + I+ F+ G+
Sbjct 266 FCNSRRKVDWLTEKMRE--------ANFTV----TSMHGEMPQKERDAIMQDFR-QGNSR 312
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ N I I GR +G +T+ I
Sbjct 313 VLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRIL 372
Query 750 KEQINMY 756
++ Y
Sbjct 373 RDIEQYY 379
Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 67/188 (36%), Gaps = 16/188 (9%)
Query 187 IVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+ ++ +++VE ED S E NL E+ + Y P
Sbjct 1 MADEIMENVELTTSEDVNAVSSF--------EEMNLKED-----LLRGIYAYGYETPSAV 47
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + KG++ I A +G GKT + + + + + + + Q
Sbjct 48 QSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDL--SVRDTQALILSPTRELAVQI 105
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + + G T+ ++++ ++ TP + + +++ +
Sbjct 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNL-RTRNV 164
Query 367 TLMIFDEC 374
++I DE
Sbjct 165 KMLILDEA 172
>sp|Q5ZM36|IF4A3_CHICK Eukaryotic initiation factor 4A-III OS=Gallus
gallus OX=9031 GN=EIF4A3 PE=2 SV=1
Length=412
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 222 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 277
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 278 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 325
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 326 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 384
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 385 DDIRILRDIEQYYSTQI 401
Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 9/142 (6%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y KP Q +KG++ I + +G GKT +S+L C Q ++ +
Sbjct 55 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-----IQVRETQ 109
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + + + G T + ++ ++ TP +
Sbjct 110 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVF 169
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ +++ ++ +++ DE
Sbjct 170 DMIRRRSL-RTRAIKMLVLDEA 190
>sp|Q5U526|I4A3A_XENLA Eukaryotic initiation factor 4A-III-A OS=Xenopus
laevis OX=8355 GN=eif4a3-a PE=2 SV=1
Length=415
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 74/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 225 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 280
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 281 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 328
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D+ Q +L+I Y+ N I I GR +G + +
Sbjct 329 -SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGGKGVAINFVKN 387
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 388 DDIRILRDIEQYYSTQI 404
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 5/140 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK-KFPQGQKGKVV 294
Y KP Q +KG++ I + +G GKT C L+ Q ++ + +
Sbjct 58 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKT---ATFCVSVLQCLDIQVRETQAL 114
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
A + Q + V + + G T + ++ ++ TP + +
Sbjct 115 ILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 174
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+++ ++ +++ DE
Sbjct 175 IRRRSL-RTRAIKMLVLDEA 193
>sp|Q10I26|IF43B_ORYSJ Eukaryotic initiation factor 4A-III homolog
B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1
SV=1
Length=404
Score = 106 bits (264), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + L +R E L+ ++ E K + LC + Y
Sbjct 214 LPHEILEMTSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLC----DLYDTLT 269
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + N + G M + I+ F+
Sbjct 270 ITQAVIFCNTKRKVDWLTERMRSN----NFTVSAMHG--------DMPQKERDAIMGEFR 317
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI T V G+D+ Q +LVI Y+ N I I GR +G +
Sbjct 318 -SGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKK 376
Query 744 NAGVIEKEQINMYKEKM 760
I ++ Y ++
Sbjct 377 EDIRILRDIEQYYSTQI 393
Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 82/212 (39%), Gaps = 24/212 (11%)
Query 218 ECQNLSENSCPPSEVSDT--------------NLYSPFKPRNYQLELALPAMKGKNTIIC 263
+ +NL+ + P EV + Y KP Q LP + G++ I
Sbjct 15 DDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQ 74
Query 264 APTGCGKT-FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVT 322
A +G GKT +SL +C+ ++ + + + + Q + V + +V
Sbjct 75 AQSGTGKTSMISLSVCQ---IVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 382
G + + ++ ++ TP + + +K+ T+ L+I DE +
Sbjct 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTL-RTRAIKLLILDEADEMLGRGF 190
Query 383 YNMI--MFNYLDQKL--GGSSGPLPQ-VIGLT 409
+ I ++ YL +L S LP ++ +T
Sbjct 191 KDQIYDVYRYLPPELQVCLISATLPHEILEMT 222
>sp|A6R3L3|DED1_AJECN ATP-dependent RNA helicase DED1 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DED1 PE=3
SV=1
Length=694
Score = 109 bits (271), Expect = 4e-23, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 116/317 (37%), Gaps = 40/317 (13%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E + Y+ R V + +R + + L + R
Sbjct 303 YDEARKFCYRTALHPRVVYGGAE------MGNQLRQLDQGCNVLVATPGRLVDMMERGRI 356
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+ + Q++V + +A + M + + RI + + H+R+ K A +
Sbjct 357 SLAHIQYLV-LDEADRMLDMGFEPQIRRIVQGSDMPDKHMRQTLMFSATFPPDIQKLAEE 415
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+LKD + +++TQR + D ++ L+ LC +
Sbjct 416 FLKDHI-FLSVGRVGSTSENITQR-------IVECESDKDKDSALLDILC--------SD 459
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+T++FV+T+ D L +++ + T + T ++ L+ F
Sbjct 460 STGLTLVFVETKRQADMLSDFLLDHRL------------PATAIHGDRTQRERERALELF 507
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG----SKCFLL 741
+ +G IL+AT+VA G+DI VI Y+ + + GR G S F
Sbjct 508 R-TGRCPILVATAVAARGLDIPNVTHVINYDLPNEIDDYVHRIGRTGRAGNTGISTAFFS 566
Query 742 TSNAGVIEKEQINMYKE 758
S I + +++ K+
Sbjct 567 RSKNFKIARSLVDLLKD 583
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/148 (19%), Positives = 60/148 (41%), Gaps = 17/148 (11%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKT--FVSLLICEHHLKKFPQGQKGK----- 292
P + Y + + M G++ + CA TG GKT F+ ++ + + P+ + +
Sbjct 226 PTPVQKYSIPIV---MGGRDLMACAQTGSGKTGGFLFPILSQSLHTRGPEAEAARGLGRQ 282
Query 293 ------VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIIL 346
+ + Q K+ R + G + Q+ + ++++
Sbjct 283 QKAYPTALILGPTRELVSQIYDEARKFCYRTALHPRVVYGGAEMGNQLRQLDQGCNVLVA 342
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDEC 374
TP LV+ +++G I SL+ ++ DE
Sbjct 343 TPGRLVDMMERGRI-SLAHIQYLVLDEA 369
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5
OS=Macaca fascicularis OX=9541 GN=DDX5 PE=2 SV=1
Length=614
Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 80/236 (34%), Gaps = 33/236 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA------LDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +DF + +E +
Sbjct 256 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ 315
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+ V K E L L EE E TI+FV+T+ D L + +
Sbjct 316 IVDVCHDV--------EKDEKLIR-LMEEIMSEKENKTIVFVETKRRCDELTRKMRRD-- 364
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + + +L+ FK G ILIAT VA G+D+ V
Sbjct 365 ----------GWPAMGIHGDKSQQERGWVLNEFK-HGKAPILIATDVASRGLDVEDVKFV 413
Query 713 ILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
I Y+Y + I GR R G+ T N + I++ +E N +I
Sbjct 414 INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA--NQAI 467
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/373 (18%), Positives = 132/373 (35%), Gaps = 34/373 (9%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+ G + + A TG GKT LL H+ P +G + A + +Q + V
Sbjct 128 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 187
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++Y + T I G + + + +I I TP L++ L+ G +L T ++
Sbjct 188 AEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLV 246
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEAL-DYICK 429
DE + F +K+ P Q + +A+ + ++ L DYI
Sbjct 247 LDEADRMLD------MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI 300
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+L+ S HN+ ++ V + +K + + R+ ++ +R
Sbjct 301 NIGALELS----ANHNILQIVDVCHDVEKDEKLI--RLMEEIMSEKENKTIVFVETKRRC 354
Query 490 CKDLENLSQIQNREFG-----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
+ + + G +Q+ W++ K + D SR
Sbjct 355 DELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRG---------- 404
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
D + + + DY+ R+ T +++ +L SV R+
Sbjct 405 -LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query 605 SN-ENPKLEDLCF 616
+ NPKL L
Sbjct 464 NQAINPKLLQLVE 476
>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila
melanogaster OX=7227 GN=Rm62 PE=1 SV=3
Length=719
Score = 109 bits (271), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/202 (24%), Positives = 79/202 (39%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
K+ +DF N +E + + D +E K E L +L +
Sbjct 471 KEVKQLAEDFLGNYIQINIGSLELSANHNIRQVV--------DVCDEFSKEEKLKTLLSD 522
Query 621 EYHLNPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
Y + I+FV+T+ VD L +I ++ G + G + +
Sbjct 523 IYDTSESPGKIIIFVETKRRVDNLVRFIRSF----GVRCGAIHG--------DKSQSERD 570
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGS 736
+L F+ SG NIL+AT VA G+D+ VI ++Y N I I GR +G+
Sbjct 571 FVLREFR-SGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGT 629
Query 737 KCFLLTSNAGVIEKEQINMYKE 758
T N K +++ +E
Sbjct 630 SFAFFTKNNAKQAKALVDVLRE 651
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 69/183 (38%), Gaps = 6/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAM 255
+++ E +I + Q Q+ SE P + + P Q + AM
Sbjct 257 SPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAM 316
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSK 312
G N + A TG GKT +L H+ +G + A + QQ +
Sbjct 317 SGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELA-QQIQQVAT 375
Query 313 YFERHGY-RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
F Y R T + G + + + +I+I TP L++ L G+ +L T ++
Sbjct 376 EFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGS-TNLKRCTYLVL 434
Query 372 DEC 374
DE
Sbjct 435 DEA 437
>sp|A5DE68|FAL1_PICGU ATP-dependent RNA helicase FAL1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=FAL1 PE=3
SV=2
Length=397
Score = 106 bits (263), Expect = 6e-23, Method: Composition-based stats.
Identities = 61/279 (22%), Positives = 103/279 (37%), Gaps = 25/279 (9%)
Query 488 RICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
++ +D++ L Q Q+ GT + I +M DE + F
Sbjct 131 QVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRHVKMLVLDEADELLTKGFKEQI--- 187
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
Y + A++ L + + + L +R + L+ ++
Sbjct 188 -YEIYKTLPAGAQVVVVSATLTPEVLEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEK 246
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K + LC + Y T ++F T+A V NW+ G + S + G
Sbjct 247 EDWKFDTLC----DLYDNLTITQAVIFCNTKAKV----NWLAGQMRKSNFTVAAMHG--- 295
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIK 723
M + I+ F+ SG +LI+T V GID+ Q +LVI Y+ N +
Sbjct 296 -----DMKQEDRDSIMKEFR-SGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVH 349
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
I GR +G+ LLTS K + Y K+
Sbjct 350 RIGRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIRE 388
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/128 (18%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + ++G++TI A +G GKT + + + + + + + + +Q
Sbjct 51 QSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDT--KSKDCQALVLSPTRELAQQI 108
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + R G T V+++ + II TP +++ +K+ I
Sbjct 109 ENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMPRH-V 167
Query 367 TLMIFDEC 374
+++ DE
Sbjct 168 KMLVLDEA 175
>sp|P54509|YQHH_BACSU Uncharacterized ATP-dependent helicase YqhH
OS=Bacillus subtilis (strain 168) OX=224308 GN=yqhH PE=3
SV=1
Length=557
Score = 107 bits (268), Expect = 6e-23, Method: Composition-based stats.
Identities = 91/573 (16%), Positives = 188/573 (33%), Gaps = 107/573 (19%)
Query 239 SPFKPRNYQLELALPAMKGKN--TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
F P +QLE+A ++ N I+ G GKT + LI + + +G K++
Sbjct 56 PSFTPLPHQLEVAQKVVEKMNGKAILADEVGLGKTVEAGLILK---EYMIRGLAKKILIL 112
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ Q + F + E DI++ + +
Sbjct 113 VP-ASLVSQWVKELQEKFLIPAV-----------EQKKSYVWEQCDIVVSSIDTAKRSPH 160
Query 357 KGTIPSLSIFTLMIFDECHN----TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ + S+ + L+I DE H +K + + + + LTA+
Sbjct 161 REIVLSIP-YDLVIIDEAHKLKNSKTKNYEFVRNLVKKYC-------------LLLTATP 206
Query 413 GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 472
++ I L + L + + H EE + +K + K
Sbjct 207 -------IQNRIEEIFNLVSLLKPGHLGSQNHFQEEFAK---------KKSSLEAHEHLK 250
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
++ ++M + L+ Q V+ + F ++
Sbjct 251 DLVNKVMIRNR-------RHDTGLNWKQRH-------------VETVPIQFSPSEQALYD 290
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
I + ++ + E ++A+ + + I++D +
Sbjct 291 EISRLKDSINKPASMFSIMTLQRECCSSREAVYMTLKKMLDQKEKQAPAIDEDTISVLID 350
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ ++ S+ ++ DL + + I+F + RA L+ +++ N
Sbjct 351 RINQVTQNSKAL-----QVVDLIKKIDD--------KVIIFTEYRATQIYLQWFLQQN-- 395
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G G + + D F+ G +LIAT EGI++ CN +
Sbjct 396 ----------GISSVPFRGGFKRGKKDWMKDLFR--GKIQVLIATEAGGEGINLQFCNHM 443
Query 713 ILYEYVGNVIKMIQTRGR----GRARGSKCFLLTSNAGVIEKEQINMYK-----EKMMND 763
I Y+ N +++ Q GR G+ R + + + V E +Y+ EK++ +
Sbjct 444 INYDLPWNPMRLEQRIGRIHRLGQERDVHIYNMATKHTVEEHILKLLYEKIHLFEKVVGE 503
Query 764 SILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
L F E + I H + + K
Sbjct 504 LDDILTKIQVNNFEEHLHDILYHSATEEEMKIK 536
>sp|Q6C347|FAL1_YARLI ATP-dependent RNA helicase FAL1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=FAL1 PE=3
SV=1
Length=397
Score = 105 bits (262), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/197 (22%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + L +R E L+ L+ E K + LC + Y
Sbjct 207 LPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLC----DLYDTLT 262
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L ++ N + + M + I++ F+
Sbjct 263 ITQAVIFCNTKKKVDWLTQQMKDNNFTVC------------SMHGDMAQKDRDSIMNEFR 310
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V GID+ Q +LVI Y+ N I I GR +G T+
Sbjct 311 -SGRSRVLISTDVWARGIDVQQVSLVINYDLPPNRENYIHRIGRSGRFGRKGVAINFATN 369
Query 744 NAGVIEKEQINMYKEKM 760
+ ++ Y ++
Sbjct 370 DDITTLRDIEQYYSTQI 386
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/128 (19%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q +KG++TI A +G GKT + + + ++ + + + + Q
Sbjct 51 QSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDT--KHRETQAMVLSPTRELATQI 108
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + + G T+ +V ++++ ++ TP ++ +KKG
Sbjct 109 QSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKG-CLRTKNL 167
Query 367 TLMIFDEC 374
++I DE
Sbjct 168 KMLILDEA 175
>sp|Q12099|FAL1_YEAST ATP-dependent RNA helicase FAL1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FAL1
PE=1 SV=1
Length=399
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V ++ + L +R E L+ ++ + E K + LC I Y T ++
Sbjct 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI----YDSLTITQCVI 270
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F T+ VD L + ++ + + M + +++ F+ +G
Sbjct 271 FCNTKKKVDWLSQRL--------IQSNFAV----VSMHGDMKQEERDKVMNDFR-TGHSR 317
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +T
Sbjct 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377
Query 750 KEQINMYKEKM 760
+E Y K+
Sbjct 378 REIEKFYSIKI 388
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 44/119 (37%), Gaps = 4/119 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
GK+ I A +G GKT + + + + + + + Q V +
Sbjct 60 GKDVIAQAQSGTGKT--ATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDY 117
Query 317 HGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I+ G T ++ + + TP +++ +KK + + + +++ DE
Sbjct 118 MNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRN-VQMLVLDEA 175
>sp|A6ZXY5|FAL1_YEAS7 ATP-dependent RNA helicase FAL1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=FAL1 PE=3 SV=1
Length=399
Score = 105 bits (262), Expect = 8e-23, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 74/191 (39%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V ++ + L +R E L+ ++ + E K + LC I Y T ++
Sbjct 215 EVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDI----YDSLTITQCVI 270
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F T+ VD L + ++ + + M + +++ F+ +G
Sbjct 271 FCNTKKKVDWLSQRL--------IQSNFAV----VSMHGDMKQEERDKVMNDFR-TGHSR 317
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N I I GR +G +T
Sbjct 318 VLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKL 377
Query 750 KEQINMYKEKM 760
+E Y K+
Sbjct 378 REIEKFYSIKI 388
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 44/119 (37%), Gaps = 4/119 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
GK+ I A +G GKT + + + + + + + Q V +
Sbjct 60 GKDVIAQAQSGTGKT--ATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDY 117
Query 317 HGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I+ G T ++ + + TP +++ +KK + + + +++ DE
Sbjct 118 MNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRN-VQMLVLDEA 175
>sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila
melanogaster OX=7227 GN=bel PE=1 SV=1
Length=798
Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats.
Identities = 56/351 (16%), Positives = 117/351 (33%), Gaps = 39/351 (11%)
Query 452 VVYKPQKFFRKVESR------ISDKFKYIIAQLMRDTESLAKRICKDLENL-----SQIQ 500
V PQ + + + + + Q+ + + A R L + Q
Sbjct 362 HVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQ 421
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESR-ICKALFLYTSHLRKYNDALIISEHAR 559
RE + + M+ + E R + + I E
Sbjct 422 MRELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN 481
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRF-----------EEKLQELESVSRDPSNEN 608
M FS E+ D + E + + +P +
Sbjct 482 MPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRS 541
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
L DL +++ +++T++FV+T+ D+L+ ++ T+
Sbjct 542 Y-LLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQ------------CNHPVTS 588
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ T ++ L F+ SGD IL+AT+VA G+DI VI ++ +V + +
Sbjct 589 IHGDRTQKEREEALRCFR-SGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRI 647
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
GR + TS + + E ++ ++ + ++ E + ++
Sbjct 648 GRTGRM-GNLGVATSFFNEKNRNICSDLLELLI-ETKQEIPSFMEDMSSDR 696
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/175 (18%), Positives = 60/175 (34%), Gaps = 15/175 (9%)
Query 214 QEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
Q P ++ + + + + KP Q + G++ + CA TG GKT
Sbjct 288 QNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTA 347
Query 273 VSLLICEH---HLKKFPQGQKGKV----------VFFANQIPVYEQQKSVFSKYFERHGY 319
L+ + L P Q + + A + Q K+ R
Sbjct 348 AFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRM 407
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R + G + + ++ +I+ TP L + + +G + L ++ DE
Sbjct 408 RPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMITRGKVG-LENIRFLVLDEA 461
>sp|Q9C8J1|RH34_ARATH DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis
thaliana OX=3702 GN=RH34 PE=2 SV=2
Length=392
Score = 105 bits (261), Expect = 9e-23, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 19/193 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L + E L+ ++ D E K + LC + Y I+
Sbjct 211 EMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLC----DLYGRLTINQAII 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + ++ + + I++ F+ S
Sbjct 267 FCNTRQKVDWLTE--------KMRSSNFIV----SSMHGDKRQKERDDIMNQFR-SFKSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA--RGSKCFLLTSNAGVIEK 750
+LIA+ V GID+ + VI Y+ N I GR R ++ + +
Sbjct 314 VLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDL 373
Query 751 EQINMYKEKMMND 763
+ I + + +
Sbjct 374 KDIERHYGTKIRE 386
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/139 (18%), Positives = 58/139 (42%), Gaps = 5/139 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT-FVSLLICEHHLKKFPQGQKGKVV 294
Y KP Q +P +KG++ I A +G GKT +++ +C+ +K +V+
Sbjct 38 YDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ---IVNISSRKVQVL 94
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ + Q + + G + ++++ + TP + +
Sbjct 95 VLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRVYDM 154
Query 355 LKKGTIPSLSIFTLMIFDE 373
+K+G++ + + L++ DE
Sbjct 155 IKRGSLQTKA-VKLLVLDE 172
>sp|Q9FNQ1|DEXHE_ARATH DExH-box ATP-dependent RNA helicase DExH14
OS=Arabidopsis thaliana OX=3702 GN=BRR2C PE=2 SV=1
Length=2157
Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/161 (22%), Positives = 73/161 (45%), Gaps = 9/161 (6%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-----GQKGKVVFFANQIPVYEQQKSVFS 311
+N ++CAPTG GKT ++++ H +K+ + + K+V+ A + + S FS
Sbjct 523 NENILVCAPTGAGKTNIAMISVLHEIKQHFRDGYLHKNEFKIVYVAPMKALAAEVTSAFS 582
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI-FTLMI 370
+ V ++G + +E +I+ TP+ +K + S+S+ L+I
Sbjct 583 RRLAPLNMVVKELTGDMQ---LTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLI 639
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
DE H + + + S+ + +++GL+A+
Sbjct 640 IDEVHLLNDDRGAVIEALVARTLRQVESTQTMIRIVGLSAT 680
Score = 80.2 bits (196), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/165 (22%), Positives = 71/165 (43%), Gaps = 13/165 (8%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-E 315
N ++ APTG GKT + L L+ F KVV+ A + ++ + + K+
Sbjct 1371 DNNVLVGAPTGSGKTISAELAM---LRLFSTQPDMKVVYIAPLKAIVRERMNDWKKHLVA 1427
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDE 373
G + ++G ++ + + DIII TP+ + + + + L+I DE
Sbjct 1428 PLGKEMVEMTGDYTPDLVA---LLSADIIISTPEKW-DGISRNWHTRSYVKKVGLVILDE 1483
Query 374 CH-NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGL-TASVGVGD 416
H + + P ++ + + + + + + +GL TA GD
Sbjct 1484 IHLLGADRGPILEVIVSRM-RYISSQTERSVRFVGLSTALANAGD 1527
Score = 38.2 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 40/308 (13%), Positives = 97/308 (31%), Gaps = 39/308 (13%)
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
SR ++ +L D + + + ++ + + T+K +++ ++
Sbjct 582 SRRLAPLNMVVKELTGDMQLTKTELEETQMIVTTPEKWDVITRKSSDMSMSMLVKLLIID 641
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDAL-DYLKDFFSNVRAAGFDEIE 583
+ R L LR+ + + L YL+
Sbjct 642 EVHLLNDDRGAVIEALVARTLRQVESTQTMIRIVGLSATLPSYLQVAQFLRVNTDTGLFY 701
Query 584 QDLTQRFEEKLQELESVSR-DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA---- 638
D + R Q+ ++ + + N L ++C+ + + ++FV +R
Sbjct 702 FDSSYRPVPLAQQYIGITEHNFAARNELLNEICYK-KVVDSIKQGHQAMIFVHSRKDTSK 760
Query 639 LVDALKNWIEG-----------NPKLSFLKPGILTGRGK----------TNQNTGMTLPA 677
+ L + +P+ +K ++ R K + GM
Sbjct 761 TAEKLVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSD 820
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL----YEYVG------NVIKMIQT 727
+ F + G +L+ T+ G+++ +VI Y+ ++ ++Q
Sbjct 821 RTLTERLF-SDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQI 879
Query 728 RGRGRARG 735
GR
Sbjct 880 FGRAGRPQ 887
>sp|A5DWJ1|FAL1_LODEL ATP-dependent RNA helicase FAL1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=FAL1 PE=3 SV=1
Length=399
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/326 (19%), Positives = 113/326 (35%), Gaps = 35/326 (11%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLA----------KRICKDLENLSQ 498
+ +V+ K + + + + I +++ K + D++ L Q
Sbjct 84 MLEVLDSKSKECQALVLSPTRELATQIQNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQ 143
Query 499 IQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
Q GT + I + +M DE + F Y +
Sbjct 144 GQQIVSGTPGRVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQI----YEIYKHLPPG 199
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
++ L + + + L +R E L ++ E+ K + LC
Sbjct 200 VQVVVVSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLC-- 257
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
+ Y T ++F T+ V+ L + + ++ G M
Sbjct 258 --DLYDNLTITQAVIFCNTKIKVNWLTDQMRKQ------NFTVVAMHGD------MKQEE 303
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRAR 734
+ I++ F+ SG+ +LI+T V GID+ Q +LVI Y+ N I I GR +
Sbjct 304 RDAIMNDFR-SGNSRVLISTDVWARGIDVQQISLVINYDLPLDKENYIHRIGRSGRFGRK 362
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKM 760
G+ LLT + + K Y K+
Sbjct 363 GTAINLLTKSDTIELKALEKYYSTKI 388
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/128 (16%), Positives = 52/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + G++TI A +G GKT + L + ++ + + + + Q
Sbjct 53 QSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVLD--SKSKECQALVLSPTRELATQI 110
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + + G ++++ + I+ TP +++ +K+ + +
Sbjct 111 QNVIKHLGDYMNIQTYACIGGKNVGTDIKRLQQGQQIVSGTPGRVLDVIKRRNLSTRH-I 169
Query 367 TLMIFDEC 374
++I DE
Sbjct 170 KMLILDEA 177
>sp|Q9YFQ8|HELS_AERPE ATP-dependent DNA helicase Hel308 OS=Aeropyrum
pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) OX=272557 GN=hel308 PE=3 SV=2
Length=735
Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats.
Identities = 64/325 (20%), Positives = 117/325 (36%), Gaps = 35/325 (11%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+P+ L+ + KG+N ++ APTG GKTF++L+ + L + G+ +
Sbjct 29 FEPQYMALQAGVE--KGENLVVAAPTGSGKTFIALVAIVNSLAR----AGGRAFYLVPLK 82
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
V ++ + FS R G ++ G E P ++I T + + L+
Sbjct 83 SVAYEKYTSFS-ILSRMGLKLKISVGDFREGPPEAP------VVIATYEKFDSLLRVS-- 133
Query 361 PSLSI-FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
PSL+ +++I DE H+ S P + + ++ S+G Q++GL+A+V
Sbjct 134 PSLARNVSVLIVDEIHSVS--DPKRGPILESIVSRMLASAGE-AQLVGLSATVPNAG--- 187
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
A I L + V+K K + Y + L
Sbjct 188 ----------EIAEWIGGKIVESSWRPVPLREYVFKEYKLYSPTGGLREVPRVYGLYDLD 237
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
E++ + S+ + + ++ + E SR A
Sbjct 238 LAAEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRRLSSREAR---VYSAEASRAEGAPR 294
Query 540 LYTSHLRKYNDALIISEHARMKDAL 564
L A I HA + +L
Sbjct 295 SVAEELASLIAAGIAYHHAGLPPSL 319
>sp|Q7ZVA6|IF4A3_DANRE Eukaryotic initiation factor 4A-III OS=Danio
rerio OX=7955 GN=eif4a3 PE=2 SV=1
Length=406
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + L +R E L+ ++ E K + LC + Y
Sbjct 216 LPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLC----DLYDTLT 271
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ VD L + ++ + M ++ I+ F+
Sbjct 272 ITQAVIFCNTKRKVDWLTEKMRE--------ANFTV----SSMHGDMPQKERESIMKEFR 319
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG +LI+T V G+D++Q +L+I Y+ N I I GR +G + +
Sbjct 320 -SGASRVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKN 378
Query 744 NAGVIEKEQINMYKEKM 760
+ I ++ Y ++
Sbjct 379 DDIRILRDIEQYYSTQI 395
Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/139 (16%), Positives = 51/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +KG++ I + +G GKT + L Q ++ + +
Sbjct 49 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLD--IQVRETQALI 106
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V + + G T + ++ ++ TP + + +
Sbjct 107 LAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 166
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 167 RRRSL-RTRAIKMLVLDEA 184
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP2
PE=3 SV=2
Length=562
Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/256 (18%), Positives = 90/256 (35%), Gaps = 34/256 (13%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +D+ ++ +E + +
Sbjct 289 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQ 348
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ ++ S K + L L+ + + ++F T+ D + ++ +
Sbjct 349 LVEVIDEFS--------KRDRLVKHLESALN-EKDNKILVFASTKRTCDEITTYLRSD-- 397
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +LD F+ G +I++AT VA GID+ V
Sbjct 398 ----------GWPALAIHGDKEQNERDWVLDEFR-KGKTSIMVATDVAARGIDVKGITHV 446
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI-LRL 768
I Y+ GN + I GRG A G+ T + + + +E N ++ L
Sbjct 447 INYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREA--NQTVPPEL 504
Query 769 QTWDEAVFREKILHIQ 784
Q +D + + Q
Sbjct 505 QRFDRRSYGSHMRFGQ 520
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 5/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
D+E + +++ + + P E P + + KP Q + A
Sbjct 102 SDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMA 161
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ I A TG GKT L H+ PQ G V+ A + Q ++ S
Sbjct 162 LSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTECS 221
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K+ + R T + G + + + +I I TP L++ L+ G +L T ++
Sbjct 222 KFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDMLEAGK-TNLKRVTYLVL 280
Query 372 DEC 374
DE
Sbjct 281 DEA 283
>sp|Q6FJG1|FAL1_CANGA ATP-dependent RNA helicase FAL1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=FAL1 PE=3 SV=1
Length=399
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 76/191 (40%), Gaps = 20/191 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R E L+ ++ + E K + LC I Y T ++
Sbjct 215 EITKKFMNDPVKILVKRDEITLEGIKQYYVNVEKEEWKFDTLCDI----YDSLTITQCVI 270
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F ++ VD L + ++ + + + M + +++ F+ +G
Sbjct 271 FCNSKKKVDWLAHKLKQ------------SNFAVISMHGDMKQDERDRVMNEFR-TGQSR 317
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI+T V GID+ Q +LVI Y+ N + I GR +G LT
Sbjct 318 VLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGVAINFLTKIDASRM 377
Query 750 KEQINMYKEKM 760
KE YK K+
Sbjct 378 KEIEKYYKIKV 388
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 46/119 (39%), Gaps = 4/119 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
GK+ I A +G GKT + + + + + + Q V + +
Sbjct 60 GKDVIAQAQSGTGKT--ATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDY 117
Query 317 HGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++G +++I + +I TP +++ +K+ I + +++ DE
Sbjct 118 MNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRLIETRH-VQILVLDEA 175
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DED1 PE=3 SV=1
Length=650
Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/150 (23%), Positives = 61/150 (41%), Gaps = 16/150 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
D L + + + +T++FV+T+ + D L +++ I+ T +
Sbjct 402 MDKKSTLLDLLSASNDGLTLIFVETKRMADELTDFL------------IMQDFRATAIHG 449
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
T ++ L AFK +G+ N+L+AT+VA G+DI V+ Y+ + + I
Sbjct 450 DRTQSERERALAAFK-NGNANLLVATAVAARGLDIPNVTHVVNYDLPSDIDDYVHRIGRT 508
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G I K + E
Sbjct 509 GRAGNTGVATAFFNRGNRNIVKGMYELLAE 538
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 23/187 (12%)
Query 207 SDIQIFYQEDPECQNLSENSCPP--SEVSDTNLYSPFK----PRNYQLELALPAMKGKNT 260
DI + + ++E + PP + + + + + F + Y + + G++
Sbjct 144 DDIPVDASGTDVPEAITEFTSPPLDALLLENIILARFTKPTPVQKYSVPIVSR---GRDL 200
Query 261 IICAPTGCGKT--FVSLLICEHHLKK-FPQGQKGKVVF----------FANQIPVYEQQK 307
+ CA TG GKT F+ ++ E P + + F A + Q
Sbjct 201 MACAQTGSGKTGGFLFPVLSESFKNGPSPMPESARKSFVKKAYPTALVLAPTRELATQIY 260
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R R T + G + + + D+++ TP L + L++G + SL+
Sbjct 261 DEAKKFTYRSWVRPTVVYGGSDIGSQIRDLSRGCDLLVATPGRLSDLLERGRV-SLANVK 319
Query 368 LMIFDEC 374
++ DE
Sbjct 320 YLVLDEA 326
>sp|A3GFV3|FAL1_PICST ATP-dependent RNA helicase FAL1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=FAL1 PE=3 SV=1
Length=399
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/278 (19%), Positives = 101/278 (36%), Gaps = 25/278 (9%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQK-ACMVFQMPDKDEESRICKALFLYTSHLRK 547
+ D++ L Q Q GT +V Q+ + +M DE + + + +
Sbjct 134 VGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRNIKMLILDEADELFTK--GFKEQIYE 191
Query 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
L S + A L + + + L +R + L+ ++ E
Sbjct 192 VYKYLPPSVQVVVVSAT--LSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKE 249
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ K + LC + Y T ++F T+ V+ L + +
Sbjct 250 DWKFDTLC----DLYDNLTITQAVIFCNTKLKVNWLTDQMRKQNFTVV------------ 293
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKM 724
+ + M + I++ F+ +G+ +LI+T V GID+ Q +LVI Y+ N I
Sbjct 294 SMHGDMKQDERDSIMNDFR-TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHR 352
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
I GR +G L+T ++ Y K+
Sbjct 353 IGRSGRFGRKGVAINLITKEDVATLRDFEKYYSTKIRE 390
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 51/128 (40%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + G++TI A +G GKT + + + + + + + Q
Sbjct 53 QSRAIMQIINGRDTIAQAQSGTGKTATFSIGMLQAIDT--NAKDCQALILSPTRELAVQI 110
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + G T ++++ + I+ TP +V+ +K+ + + +
Sbjct 111 QNVVKHLGDYMNIHTHACIGGTHVGDDIKKLKQGQQIVSGTPGRVVDMVKRQQLSTRN-I 169
Query 367 TLMIFDEC 374
++I DE
Sbjct 170 KMLILDEA 177
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3
SV=2
Length=494
Score = 105 bits (262), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 19/191 (10%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + + E K S + +E+ K L +L++ +
Sbjct 283 VEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMD---GSRI 339
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
++F+ T+ D + + + G + + + + +L FK SG
Sbjct 340 LIFMDTKKGCDQITRQLR------------MDGWPALSIHGDKSQAERDWVLSEFK-SGK 386
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
I+ AT VA G+D+ VI Y++ G+ + I GR A+G+ T+
Sbjct 387 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANAR 446
Query 748 IEKEQINMYKE 758
K+ IN+ +E
Sbjct 447 FAKDLINILEE 457
Score = 69.8 bits (169), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (44%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A++G++ I A TG GKT LL H+ P G V+ A + Q +
Sbjct 125 ALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEA 184
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+K+ + T I G + V + + +I+I TP L++ + + +L T ++
Sbjct 185 TKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMI-ESHHTNLRRVTYLV 243
Query 371 FDEC 374
DE
Sbjct 244 LDEA 247
>sp|P24783|DBP2_YEAST ATP-dependent RNA helicase DBP2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP2
PE=1 SV=1
Length=546
Score = 106 bits (263), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/233 (18%), Positives = 79/233 (34%), Gaps = 31/233 (13%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A D+ ++ +E + +
Sbjct 275 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQ 334
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ + + D E + E T++F T+ + D + ++ +
Sbjct 335 IVEVVSDFEK---------RDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLRED-- 383
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L F+ +G I++AT VA GID+ N V
Sbjct 384 ----------GWPALAIHGDKDQRERDWVLQEFR-NGRSPIMVATDVAARGIDVKGINYV 432
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
I Y+ GN + I GR A G+ T + + I++ +E N
Sbjct 433 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQN 485
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/215 (22%), Positives = 89/215 (41%), Gaps = 9/215 (4%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K NW + L E+N + E + ++D ++ + +++ I + P+
Sbjct 60 KPNWDEELPKLPTFEKNFYVE----HESVRDRSDSEIAQFRKENEMTISGHDIPKPITTF 115
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P V + F KP Q + A+ G++ + A TG GKT L H+
Sbjct 116 DEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHI 175
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q ++ SK+ R T + G ++ + +
Sbjct 176 NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSR 235
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++I+I TP L++ L+ G +L T ++ DE
Sbjct 236 GSEIVIATPGRLIDMLEIGK-TNLKRVTYLVLDEA 269
>sp|A6ZRX0|DBP2_YEAS7 ATP-dependent RNA helicase DBP2 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP2 PE=3 SV=1
Length=546
Score = 106 bits (263), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/233 (18%), Positives = 79/233 (34%), Gaps = 31/233 (13%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A D+ ++ +E + +
Sbjct 275 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQ 334
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ + + D E + E T++F T+ + D + ++ +
Sbjct 335 IVEVVSDFEK---------RDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYLRED-- 383
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L F+ +G I++AT VA GID+ N V
Sbjct 384 ----------GWPALAIHGDKDQRERDWVLQEFR-NGRSPIMVATDVAARGIDVKGINYV 432
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
I Y+ GN + I GR A G+ T + + I++ +E N
Sbjct 433 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQN 485
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 47/215 (22%), Positives = 89/215 (41%), Gaps = 9/215 (4%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLS 223
K NW + L E+N + E + ++D ++ + +++ I + P+
Sbjct 60 KPNWDEELPKLPTFEKNFYVE----HESVRDRSDSEIAQFRKENEMTISGHDIPKPITTF 115
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
+ + P V + F KP Q + A+ G++ + A TG GKT L H+
Sbjct 116 DEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHI 175
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q ++ SK+ R T + G ++ + +
Sbjct 176 NAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSR 235
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++I+I TP L++ L+ G +L T ++ DE
Sbjct 236 GSEIVIATPGRLIDMLEIGK-TNLKRVTYLVLDEA 269
>sp|Q6BT27|FAL1_DEBHA ATP-dependent RNA helicase FAL1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=FAL1 PE=3 SV=1
Length=399
Score = 104 bits (258), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/197 (20%), Positives = 77/197 (39%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L V + + L +R + L+ ++ E+ K + LC + Y
Sbjct 209 LSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLC----DLYDSLT 264
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ V+ L + ++ K + M + I++ F+
Sbjct 265 ITQAVIFCNTKVKVNWLTDQMK--------KANFTV----VAMHGDMKQDERDSIMNDFR 312
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
+G+ +LI+T V GID+ Q +LVI Y+ N + I GR +G L+T
Sbjct 313 -TGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYVHRIGRSGRFGRKGVAINLVTK 371
Query 744 NAGVIEKEQINMYKEKM 760
++ Y+ ++
Sbjct 372 EDVDELRDIERFYRIRI 388
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/128 (19%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + GK+TI A +G GKT + + + + + + + + +Q
Sbjct 53 QSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDT--KSKDCQALILSPTRELAQQI 110
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+SV + G T ++++ + I+ TP +V+ +K+ + + +
Sbjct 111 QSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNLATRN-I 169
Query 367 TLMIFDEC 374
+MI DE
Sbjct 170 KMMILDEA 177
>sp|O02494|IF4A_CRYPV Eukaryotic initiation factor 4A OS=Cryptosporidium
parvum OX=5807 GN=EIF4-A PE=2 SV=1
Length=405
Score = 104 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 20/193 (10%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + ++ L ++ E L+ + + K++ L + Y I+
Sbjct 220 HLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLI----DLYETLTIVQAII 275
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
+ TR VD L + + G M ++ I+ F+ SG
Sbjct 276 YCNTRRRVDQLTKQMRERD----FTCSSMHG--------DMDQKDREVIMRQFR-SGSSR 322
Query 693 ILIATSVADEGIDIAQCNLVILYEY---VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LI T + GID+ Q +LVI Y+ I I GR +G +T + V
Sbjct 323 VLITTDLLARGIDVQQVSLVINYDLPVSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCL 382
Query 750 KEQINMYKEKMMN 762
++ Y ++
Sbjct 383 RDIERHYNTQIEE 395
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q P + G +TI A +G GKT + + K +V+ A
Sbjct 53 KPSAIQQRGIKPILDGYDTIGQAQSGTGKT--ATFVIAALQKIDYSLNACQVLLLAPTRE 110
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q + V + R G T+ + ++ +++ TP + + L KG +
Sbjct 111 LAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYL- 169
Query 362 SLSIFTLMIFDEC 374
+ L I DE
Sbjct 170 RVDNLKLFILDEA 182
>sp|P21507|SRMB_ECOLI ATP-dependent RNA helicase SrmB OS=Escherichia
coli (strain K12) OX=83333 GN=srmB PE=1 SV=1
Length=444
Score = 104 bits (258), Expect = 4e-22, Method: Composition-based stats.
Identities = 59/357 (17%), Positives = 107/357 (30%), Gaps = 43/357 (12%)
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS-- 497
T + L L+ ++ P+K I + + Q+ LAK D+ ++
Sbjct 54 KTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGG 113
Query 498 ---QIQNREFG---------TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHL 545
F T + Q+I C + DE R+ + +
Sbjct 114 VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRML--DMGFAQDI 171
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ + A D +E E+ + + R
Sbjct 172 EHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADD 231
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K L +L T +I+FV+ R V L NW+ G
Sbjct 232 LEH-KTALLVHLL----KQPEATRSIVFVRKRERVHELANWLRE------------AGIN 274
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVI 722
M + + G N+L+AT VA GIDI + V ++ +
Sbjct 275 NCYLEGEMVQGKRNEAIKRL-TEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYL 333
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
I R +G+ L V + + + K + ++ + DE + +
Sbjct 334 HRIGRTARAGRKGTAISL------VEAHDHLLLGKVGRYIEEPIKARVIDELRPKTR 384
Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/123 (28%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVFSK 312
+ G++ + APTG GKT LL HL FP+ + G +++ + Q S ++
Sbjct 39 LDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELA-MQVSDHAR 97
Query 313 YFERHGY-RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+H + + I+G A E EN DI++ T L+ +K+ ++ TL I
Sbjct 98 ELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETL-IL 156
Query 372 DEC 374
DE
Sbjct 157 DEA 159
>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DED1 PE=3 SV=1
Length=637
Score = 106 bits (263), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/137 (26%), Positives = 56/137 (41%), Gaps = 16/137 (12%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ ++FV+T+ + D L +++ T+ + T ++ L A
Sbjct 420 QSGGLILVFVETKRMADTLCDFLCSRR------------HNATSIHGDRTQREREAALYA 467
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLL 741
FK SG IL+AT+VA G+DI VILY+ + I GR G+
Sbjct 468 FK-SGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFF 526
Query 742 TSNAGVIEKEQINMYKE 758
I K+ I + KE
Sbjct 527 NRGNTNIGKDLIELLKE 543
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 55/154 (36%), Gaps = 21/154 (14%)
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-------------KK 284
+P + Y + + G++ + CA TG GKT L L
Sbjct 181 ATPTPVQKYSIPIV---ADGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTG 237
Query 285 FPQGQKGKV----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
+ + KV + A + Q K+ R R + G + +
Sbjct 238 YGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRG 297
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D++ TP LV+ +++G I SL+ ++ DE
Sbjct 298 CDLLSATPGRLVDLIERGKI-SLANVKYLVLDEA 330
>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DED1 PE=3 SV=1
Length=637
Score = 106 bits (263), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/137 (26%), Positives = 56/137 (41%), Gaps = 16/137 (12%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ ++FV+T+ + D L +++ T+ + T ++ L A
Sbjct 420 QSGGLILVFVETKRMADTLCDFLCSRR------------HNATSIHGDRTQREREAALYA 467
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLL 741
FK SG IL+AT+VA G+DI VILY+ + I GR G+
Sbjct 468 FK-SGRAPILVATAVAARGLDIPNVTHVILYDLPNDVAEYTHRIGRTGRAGNVGTSTAFF 526
Query 742 TSNAGVIEKEQINMYKE 758
I K+ I + KE
Sbjct 527 NRGNTNIGKDLIELLKE 543
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 55/154 (36%), Gaps = 21/154 (14%)
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-------------KK 284
+P + Y + + G++ + CA TG GKT L L
Sbjct 181 ATPTPVQKYSIPIV---ADGRDLMACAQTGSGKTGGFLFPILSALFTYGPSTPPVEQDTG 237
Query 285 FPQGQKGKV----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
+ + KV + A + Q K+ R R + G + +
Sbjct 238 YGYRRTKKVYPTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRG 297
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D++ TP LV+ +++G I SL+ ++ DE
Sbjct 298 CDLLSATPGRLVDLIERGKI-SLANVKYLVLDEA 330
>sp|P06634|DED1_YEAST ATP-dependent RNA helicase DED1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DED1
PE=1 SV=2
Length=604
Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 68/160 (43%), Gaps = 15/160 (9%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+D L + + + +T++FV+T+ + D L +++ I+ T +
Sbjct 384 QDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL------------IMQNFRATAIHG 431
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
T ++ L AF+ SG +L+AT+VA G+DI VI Y+ +V + GR
Sbjct 432 DRTQSERERALAAFR-SGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR- 489
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
R L T+ + E ++ ++ + ++
Sbjct 490 TGRAGNTGLATAFFNSENSNIVKGLHE-ILTEANQEVPSF 528
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/188 (19%), Positives = 67/188 (36%), Gaps = 30/188 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNL-------------YSPFKPRNYQLELALPAMKGKN 259
Y + P + + P +E + L P + Y + + G++
Sbjct 125 YDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIV---ANGRD 181
Query 260 TIICAPTGCGKT--FVSLLICEHHLKKFPQGQKGK-----------VVFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ E + + V A + Q
Sbjct 182 LMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQI 241
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R + + G + + +I D+++ TP L + L++G I SL+
Sbjct 242 FDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKI-SLANV 300
Query 367 TLMIFDEC 374
++ DE
Sbjct 301 KYLVLDEA 308
>sp|A6ZP47|DED1_YEAS7 ATP-dependent RNA helicase DED1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DED1 PE=3 SV=1
Length=604
Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 68/160 (43%), Gaps = 15/160 (9%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+D L + + + +T++FV+T+ + D L +++ I+ T +
Sbjct 384 QDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFL------------IMQNFRATAIHG 431
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
T ++ L AF+ SG +L+AT+VA G+DI VI Y+ +V + GR
Sbjct 432 DRTQSERERALAAFR-SGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR- 489
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
R L T+ + E ++ ++ + ++
Sbjct 490 TGRAGNTGLATAFFNSENSNIVKGLHE-ILTEANQEVPSF 528
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/188 (19%), Positives = 67/188 (36%), Gaps = 30/188 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNL-------------YSPFKPRNYQLELALPAMKGKN 259
Y + P + + P +E + L P + Y + + G++
Sbjct 125 YDDIPVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIV---ANGRD 181
Query 260 TIICAPTGCGKT--FVSLLICEHHLKKFPQGQKGK-----------VVFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ E + + V A + Q
Sbjct 182 LMACAQTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQI 241
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R + + G + + +I D+++ TP L + L++G I SL+
Sbjct 242 FDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKI-SLANV 300
Query 367 TLMIFDEC 374
++ DE
Sbjct 301 KYLVLDEA 308
>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP2 PE=3 SV=2
Length=552
Score = 104 bits (260), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/193 (20%), Positives = 66/193 (34%), Gaps = 26/193 (13%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
DF +N E ++ ++ E K L L+
Sbjct 328 DFLNNYAQVNIGSTELAANHNVKQIIEVC--------TEFEKKGKLIGHLETI--SAENG 377
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
I+F T+ + D L ++ + G + + +L FK S
Sbjct 378 KVIIFTSTKRVADDLTKFLRQD------------GWPALAIHGDKQQQERDWVLAEFK-S 424
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT+VA G+D+ + VI Y++ N + I GR G+ T
Sbjct 425 GRSPIMVATAVASRGLDVKDISYVINYDFPTNTEDYVHQIGRTGRAGRTGTAYTYFTPEN 484
Query 746 GVIEKEQINMYKE 758
+E I + +E
Sbjct 485 SKSARELIGILRE 497
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 11/213 (5%)
Query 166 NWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSE 224
+W + EK ++ + + + +++ + + I Q P + E
Sbjct 81 DWNSVNLVPFEKN------FYVEDPRVSNRSDSEVQQYRASKQMTIQGQNVPKPVTSFDE 134
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
P +S+ +P Q + A+ G++ + A TG GKT L H+
Sbjct 135 AGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVHINA 194
Query 285 FPQGQKGK---VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
P + G + A + Q + +++ R + G + + +
Sbjct 195 QPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKGPQIRDLQRGA 254
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I I TP L++ + G +L T ++ DE
Sbjct 255 EICIATPGRLIDMVDAGK-TNLRRVTYLVMDEA 286
>sp|Q755N4|DBP2_EREGS ATP-dependent RNA helicase DBP2 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP2 PE=3 SV=2
Length=557
Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +D+ + +E + +
Sbjct 276 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLHDPIQVNIGSLELAASHTITQ 335
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ + K + L L E + ++ I+F T+ D + +++ +
Sbjct 336 LVEVVSDF--------DKRDRLVKHL-EIASKDKDSKIIIFASTKRTCDEITSYLRQD-- 384
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L+ F+ +G I++AT VA GID+ N V
Sbjct 385 ----------GWPALAIHGDKQQQERDWVLNEFR-TGRSPIMVATDVAARGIDVKGINFV 433
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
I Y+ GN + I GR A G+ T + + I++ +E
Sbjct 434 INYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEANKTLGAQLISIMRE 482
Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/199 (23%), Positives = 85/199 (43%), Gaps = 6/199 (3%)
Query 181 KFSELWIVE-KGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLY 238
KF + + VE + ++ + T+++E + ++++I + P + E P + +
Sbjct 73 KFEKNFYVEHEDVQKMSTDEVEQFRKENEMKIVGHDVPKPIRTFDEAGFPEYVLKEVKEE 132
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVF 295
KP Q + A+ G++ I A TG GKT L H+ P G V+
Sbjct 133 GFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLV 192
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + SK+ R T + G ++ + + +I+I TP L++ L
Sbjct 193 LAPTRELAVQIQKECSKFGRSSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 252
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ G +L T ++ DE
Sbjct 253 EIGK-TNLKRVTYLVLDEA 270
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP2 PE=3 SV=1
Length=540
Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 69/194 (36%), Gaps = 26/194 (13%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
DF + ++ + ++ V D + L L I QE
Sbjct 308 DFLHDFIQVNIGSLDLTANHNVAQHVE----VCTDFDKRSKLLSHLEKISQEN------G 357
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++FV T+ + D L ++ + G + + +L FK S
Sbjct 358 KVLIFVATKRVADDLTKFLR------------MDGWPALAIHGDKQQAERDWVLAEFK-S 404
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA G+D+ VI Y++ N I I GR +G+ T +
Sbjct 405 GRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDN 464
Query 746 GVIEKEQINMYKEK 759
+E + + +E
Sbjct 465 SKAARELVQILRES 478
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/150 (23%), Positives = 61/150 (41%), Gaps = 4/150 (3%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP- 286
P +S+ P + Q + A+ G++ + A TG GKT L H+ P
Sbjct 118 PDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPL 177
Query 287 --QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
G V+ A + Q ++ +K+ + R T I G + + + +I
Sbjct 178 LAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEIC 237
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP L++ L+ G +L T ++ DE
Sbjct 238 VATPGRLIDMLETGK-TNLKRVTYLVMDEA 266
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP2 PE=3 SV=1
Length=540
Score = 104 bits (259), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 69/194 (36%), Gaps = 26/194 (13%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
DF + ++ + ++ V D + L L I QE
Sbjct 308 DFLHDFIQVNIGSLDLTANHNVAQHVE----VCTDFDKRSKLLSHLEKISQEN------G 357
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++FV T+ + D L ++ + G + + +L FK S
Sbjct 358 KVLIFVATKRVADDLTKFLR------------MDGWPALAIHGDKQQAERDWVLAEFK-S 404
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G I++AT VA G+D+ VI Y++ N I I GR +G+ T +
Sbjct 405 GRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDN 464
Query 746 GVIEKEQINMYKEK 759
+E + + +E
Sbjct 465 SKAARELVQILRES 478
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/150 (23%), Positives = 61/150 (41%), Gaps = 4/150 (3%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP- 286
P +S+ P + Q + A+ G++ + A TG GKT L H+ P
Sbjct 118 PDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPL 177
Query 287 --QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
G V+ A + Q ++ +K+ + R T I G + + + +I
Sbjct 178 LAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKGPQIRDLQRGVEIC 237
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP L++ L+ G +L T ++ DE
Sbjct 238 VATPGRLIDMLETGK-TNLKRVTYLVMDEA 266
>sp|A5DQS0|DED1_PICGU ATP-dependent RNA helicase DED1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DED1 PE=3
SV=3
Length=637
Score = 104 bits (260), Expect = 7e-22, Method: Composition-based stats.
Identities = 59/332 (18%), Positives = 121/332 (36%), Gaps = 39/332 (12%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
EE ++ Y+ + R I L R + L L++L +
Sbjct 270 EEAKKFSYR--SWVRPCVVYGGADIGTQIRNLDRGCDLLVAT-PGRLKDLLERGRVSLSN 326
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
KY + + +A + M + + I + + R+ A D+
Sbjct 327 IKY----LVLDEADRMLDMGFEPQIRHIVQECDMPGVESRQTLMFSATFPRDIQMLARDF 382
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
LKD+ + +++TQ+ D ++ +L + N
Sbjct 383 LKDYI-FLSVGRVGSTSENITQKVL--------YVEDDEKKS--------VLLDLLSAND 425
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+TI+F +T+ + D L +++ G T + + ++ L AFK
Sbjct 426 NGLTIIFTETKRMADNLADFLYDQ------------GFPATAIHGDRSQYEREKALAAFK 473
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAG 746
SG IL+AT+VA G+DI + V+ Y+ G++ + GR R + T+
Sbjct 474 -SGTAPILVATAVAARGLDIPNVSHVVNYDLPGDIDDYVHRIGR-TGRAGNVGIATAFFN 531
Query 747 VIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
+ + E +++++ + + + + RE
Sbjct 532 RNNRNVVKGMIE-LLSEANQEVPDFLQKISRE 562
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 67/188 (36%), Gaps = 30/188 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYS-------------PFKPRNYQLELALPAMKGKN 259
Y + P P S + L P + Y + + G++
Sbjct 152 YDDIPVEATGDGVPEPISAFTAPPLDPLIVENIKLSRFTKPTPVQKYSVPIV---ASGRD 208
Query 260 TIICAPTGCGKT--FVSLLICEHHLKK---FPQGQ----KGKV----VFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ E ++ P+ Q KV + A + Q
Sbjct 209 LMACAQTGSGKTGGFLFPVLSESYMNGPDAVPESQGAFSSHKVHPTALVMAPTRELVSQI 268
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R R + G + + D+++ TP L + L++G + SLS
Sbjct 269 FEEAKKFSYRSWVRPCVVYGGADIGTQIRNLDRGCDLLVATPGRLKDLLERGRV-SLSNI 327
Query 367 TLMIFDEC 374
++ DE
Sbjct 328 KYLVLDEA 335
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DED1 PE=3 SV=1
Length=664
Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats.
Identities = 37/150 (25%), Positives = 64/150 (43%), Gaps = 16/150 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ ++ + + N E +TI+F +T+ + D L +++ G T +
Sbjct 417 EEKKSVILDLLNANSEGLTIVFTETKRMADNLADFLYDQ------------GFPATAIHG 464
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ ++ L AFK SG IL+AT+VA G+DI + VI Y+ + + I
Sbjct 465 DRSQYEREKALAAFK-SGQAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRT 523
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G N I K +++ E
Sbjct 524 GRAGNVGIATAFFNRNNKNIVKGMLDLLTE 553
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query 207 SDIQIFYQEDPECQNLSENSCPP------SEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
DI + + + ++ + PP + + P + Y + + G++
Sbjct 159 DDIPVEASGEGVPEPINSFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAA---GRDL 215
Query 261 IICAPTGCGKT--FVSLLICEHHLKKFPQG-------QKGK----VVFFANQIPVYEQQK 307
+ CA TG GKT F+ ++ E ++ K ++ A + Q
Sbjct 216 MACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVSQIY 275
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R R + G + Q+ D+++ TP L + L++G + SL+
Sbjct 276 DESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRV-SLANIK 334
Query 368 LMIFDEC 374
++ DE
Sbjct 335 YLVLDEA 341
>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp2
PE=2 SV=2
Length=550
Score = 104 bits (258), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
+ A DYL D+ + ++ Q E D +++ +L + +
Sbjct 316 RLARDYLNDYIQVTVGSLDLAASHNIKQIVE---------VVDNADKRARLGKDIEEVLK 366
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ + ++F T+ + D + ++ + G + +
Sbjct 367 ----DRDNKVLIFTGTKRVADDITRFLRQD------------GWPALAIHGDKAQDERDW 410
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSK 737
+L+ F+ +G I++AT VA GID+ V Y++ GN + I GR A+G+
Sbjct 411 VLNEFR-TGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTA 469
Query 738 CFLLTSNAGVIEKEQINMYKE 758
TS+ +E +++ E
Sbjct 470 YTYFTSDNAKQARELVSILSE 490
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/131 (23%), Positives = 52/131 (40%), Gaps = 4/131 (3%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVY 303
Q + AM G++ + + TG GKT L H+ P G V+ A +
Sbjct 149 QQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELA 208
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q + +K+ + R T + G + ++ +I I TP L++ L +L
Sbjct 209 VQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNK-TNL 267
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 268 RRVTYLVLDEA 278
>sp|Q9SYP1|DEXHC_ARATH DExH-box ATP-dependent RNA helicase DExH12
OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1
Length=2171
Score = 106 bits (263), Expect = 9e-22, Method: Composition-based stats.
Identities = 39/174 (22%), Positives = 74/174 (43%), Gaps = 13/174 (7%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQ 299
Q ++ A+ K +N ++CAPTG GKT V++L L+ K+V+ A
Sbjct 509 QSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPM 568
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ + S + +G V +SG + + +E II+ TP+ + K G
Sbjct 569 KALVAEVVGNLSNRLKDYGVIVRELSG---DQSLTGREIEETQIIVTTPEKWDIITRKSG 625
Query 359 TIPSLSIFTLMIFDECHNTSKQ-HPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L+I DE H P + +++ + + +++GL+A+
Sbjct 626 DRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENI-RLVGLSAT 678
Score = 85.2 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/210 (21%), Positives = 86/210 (41%), Gaps = 17/210 (8%)
Query 217 PECQNLSENSCPPSEVSDTN------LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGK 270
P + L P + + + N + F P Q+ L N ++ APTG GK
Sbjct 1321 PPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTND-NVLVAAPTGSGK 1379
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER-HGYRVTGISGATA 329
T + + + P +VV+ A + ++Q ++ F + G RV ++G TA
Sbjct 1380 TICAEFAILRNHHEGP-DATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETA 1438
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL--SIFTLMIFDECHNTSKQH-PYNMI 386
++ +++E III TP+ + L + +L I DE H QH P +
Sbjct 1439 LDL---KLLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEV 1494
Query 387 MFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + + + + +++ L+ S+
Sbjct 1495 IVSRM-RYISSQVINKIRIVALSTSLANAK 1523
>sp|Q5A9Z6|FAL1_CANAL ATP-dependent RNA helicase FAL1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=FAL1
PE=3 SV=1
Length=399
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/197 (23%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + + + L +R E L ++ E+ K + LC + Y
Sbjct 209 LPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLC----DLYDNLT 264
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
T ++F T+ V+ L + ++ ++ G M + I++ F+
Sbjct 265 ITQAVIFCNTKLKVNWLADQMKKQ------NFTVVAMHGD------MKQDERDSIMNDFR 312
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G+ +LI+T V GID+ Q +LVI Y+ N I I GR +G+ L+T
Sbjct 313 R-GNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITK 371
Query 744 NAGVIEKEQINMYKEKM 760
+ V KE Y K+
Sbjct 372 DDVVTLKEFEKYYSTKI 388
Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/139 (16%), Positives = 54/139 (39%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y P Q + + G++TI A +G GKT + + + ++ + +
Sbjct 42 YAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEVIDT--KSKECQALI 99
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + Q ++V + G V+++ + I+ TP +++ +
Sbjct 100 LSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQQIVSGTPGRVIDVI 159
Query 356 KKGTIPSLSIFTLMIFDEC 374
K+ + + + ++I DE
Sbjct 160 KRRNLQTRN-IKVLILDEA 177
>sp|O48534|DEXHD_ARATH DExH-box ATP-dependent RNA helicase DExH13
OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1
Length=2172
Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/217 (21%), Positives = 84/217 (39%), Gaps = 14/217 (6%)
Query 209 IQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTG 267
+ ++ + L + S P R Q ++ A+ K N ++CAPTG
Sbjct 473 VPWVSKKFDSNEKLVKISDLPEWAQPAFRGMQQLNRV-QSKVYGTALFKADNILLCAPTG 531
Query 268 CGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
GKT V++L H L K+V+ A + + S+ + G V
Sbjct 532 AGKTNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTV 591
Query 322 TGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+SG + Q ++ II+ TP+ + K G + L+I DE H
Sbjct 592 KELSG---DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDN 648
Query 381 -HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
P + +++ + + +++GL+A++ D
Sbjct 649 RGPVLESIVARTLRQIESTKEHI-RLVGLSATLPNCD 684
Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/162 (23%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query 259 NTIICAPTGCGKTFVSLLIC-EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER- 316
N ++ APTG GKT + +HL+ +VV+ A + ++Q + K F +
Sbjct 1369 NVVVAAPTGSGKTICAEFAILRNHLEG--PDSAMRVVYIAPLEAIAKEQFRDWEKKFGKG 1426
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFDEC 374
G RV ++G T ++ +++E III TP+ + L + + +L I DE
Sbjct 1427 LGLRVVELTGETLLDL---KLLEKGQIIISTPEKW-DALSRRWKQRKYIQQVSLFIVDEL 1482
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
H Q + + + + G +++ L+ S+
Sbjct 1483 HLIGGQGGQVLEVIVSRMRYISSQVGNKIRIVALSTSLANAK 1524
Score = 37.1 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 23/148 (16%), Positives = 60/148 (41%), Gaps = 21/148 (14%)
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
++R ++ L ++ N L G G+T ++ + + F+ G+ +L
Sbjct 782 QSREILKCLAGLLKNNDLKELLPYGFAIHHA------GLTRTDREIVENQFRW-GNLQVL 834
Query 695 IATSVADEGIDIAQCNLVIL----YEY---------VGNVIKMIQTRGRGR-ARGSKCFL 740
I+T+ G+++ ++I Y +V++MI GR + + + +
Sbjct 835 ISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGII 894
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRL 768
+T + + ++ + + + I +L
Sbjct 895 ITGYSKLQYYLRLMNEQLPIESQFISKL 922
>sp|A3LQ01|DED1_PICST ATP-dependent RNA helicase DED1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DED1 PE=3 SV=3
Length=647
Score = 104 bits (258), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/332 (20%), Positives = 112/332 (34%), Gaps = 37/332 (11%)
Query 450 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL----SQIQNREFG 505
E + P + S K I +M T L +I + + +G
Sbjct 229 ESYINGPAPIAESTGAFSSHKVHPTIL-VMAPTRELVSQIYDEAKKFAYRSWVKPAVVYG 287
Query 506 TQKYEQWIVTVQKACMVF-----QMPDKDEESRICKALFLY--------TSHLRKYNDAL 552
Q I + K C + ++ D E R+ A Y +
Sbjct 288 GADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIR 347
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK-LQELESVSRDPSNENPKL 611
I + M D D FS + +D + + + + S S + + + +
Sbjct 348 HIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKILYV 407
Query 612 EDLCF--ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
ED +L + +TI+F +T+ + D L +++ G T
Sbjct 408 EDEEKKSVLLDLLSAGDAGLTIIFTETKRMADNLADFLYDQ------------GFPATAI 455
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
+ + ++ L AFK SG IL+AT+VA G+DI VI Y+ + + I
Sbjct 456 HGDRSQYEREKALAAFK-SGAAPILVATAVAARGLDIPNVAHVINYDLPSDIDDYVHRIG 514
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G N + K I++ E
Sbjct 515 RTGRAGNVGIATAFFNRNNKNVVKGLIDLLSE 546
Score = 56.7 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/187 (18%), Positives = 70/187 (37%), Gaps = 23/187 (12%)
Query 207 SDIQIFYQEDPECQNLSENSCPP------SEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
DI + D ++ + PP ++ + P + Y + + G++
Sbjct 152 DDIPVEASGDGVPDPITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIV---AGGRDL 208
Query 261 IICAPTGCGKT--FVSLLICEHHLKKFPQG-------QKGK----VVFFANQIPVYEQQK 307
+ CA TG GKT F+ ++ E ++ K ++ A + Q
Sbjct 209 MACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVSQIY 268
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R + + G + + + D+++ TP L + L++G + SL+
Sbjct 269 DEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRV-SLANIK 327
Query 368 LMIFDEC 374
++ DE
Sbjct 328 YLVLDEA 334
>sp|O59025|HELS_PYRHO ATP-dependent DNA helicase Hel308 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974
/ NBRC 100139 / OT-3) OX=70601 GN=hel308 PE=3 SV=1
Length=715
Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/425 (17%), Positives = 144/425 (34%), Gaps = 52/425 (12%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+KG+N +I PT GKT ++ + + L + GK V+ + E++ F +
Sbjct 37 LKGENALIAIPTASGKTLIAEIAIVNRL----LKEGGKAVYLVPLKALAEEKFKEFKD-W 91
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G +V +G ++ + DIII T + + L+ G+ + +++ DE
Sbjct 92 EELGLKVAMATGDYDSK---DEWLGGYDIIIATAEKFDSLLRHGS-SWIRNVKVLVVDEI 147
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
H + ++ ++ Q+IGL+A++G N +E +++
Sbjct 148 HLIGSRD--RGATLEFIITQMLN----RAQIIGLSATIG-----NPEELAEWLNAKLIKS 196
Query 435 DASVIATVKHNLEELEQV-----VYKPQKFFRKVESRISDKFKYI-IAQLMRDTESLAKR 488
D + + + K + V I + + R E A
Sbjct 197 DWRPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAIKRSKGSLVFVNMRRKAEKTALE 256
Query 489 ICKDLEN-LSQIQNREFGTQKYE-------QWIVTVQKACMVFQMPDKDEESRICKALFL 540
+ K + N L++ + RE + + + + F E R+
Sbjct 257 LSKKIRNFLTKKELRELKELAESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENF 316
Query 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSN----VRAAGFDEIEQDLTQRFEEKLQE 596
++ +S ++D + + EI+Q + + K E
Sbjct 317 KKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDE 376
Query 597 LESVSRDPSNENP----------KLEDLCFILQEEYHLNPETITIL----FVKTRALVDA 642
+ + E P K E L L E L + + ++ F R + D
Sbjct 377 VGEAIIVSTTEEPSTVMERYIKGKPEKLFSQLSNESILRGQILALIATFNFSSFREIYDF 436
Query 643 LKNWI 647
L+
Sbjct 437 LERTF 441
Score = 39.0 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 46/206 (22%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD----------------------- 641
+ K ++ + + + ++FV R +
Sbjct 217 DGKTEKFNSWEELVYDAIKRSKGS--LVFVNMRRKAEKTALELSKKIRNFLTKKELRELK 274
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L +E NP L + G + G+ + + + FK G +++AT
Sbjct 275 ELAESLEENPTNEKLAKALQGGV--AFHHAGLGREERVLVEENFK-KGLIKVVVATPTLS 331
Query 702 EGIDIAQCNLVIL-------YEYVGNVIKMIQT-RGRGRAR------GSKCFLLTSNAGV 747
GI+ +++ + I IQ GR + T
Sbjct 332 AGINTPAFRVIVRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPST 391
Query 748 IEKEQINMYKEKMM----NDSILRLQ 769
+ + I EK+ N+SILR Q
Sbjct 392 VMERYIKGKPEKLFSQLSNESILRGQ 417
>sp|O15523|DDX3Y_HUMAN ATP-dependent RNA helicase DDX3Y OS=Homo
sapiens OX=9606 GN=DDX3Y PE=1 SV=2
Length=660
Score = 104 bits (258), Expect = 1e-21, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 16/151 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
Query 731 GRARGS---KCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ +++ E
Sbjct 530 TGRVGNLGLATSFFNEKNMNITKDLLDLLVE 560
Score = 59.8 bits (143), Expect = 9e-08, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+S +++W K L + E+ FS GI + +D+ + S+ P +
Sbjct 128 KSVEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGSNCP------PHIE 178
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N S+ + + L +P Q ++ + CA TG GKT LL
Sbjct 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query 281 HLKKFPQGQKGKVV----------------FFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ K V A + Q K+ R R +
Sbjct 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 347
>sp|Q62167|DDX3X_MOUSE ATP-dependent RNA helicase DDX3X OS=Mus
musculus OX=10090 GN=Ddx3x PE=1 SV=3
Length=662
Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
+++ F+L +++T++FV+T+ D+L++++ G T+
Sbjct 423 EEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL------------YHEGYACTS 470
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ + ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + +
Sbjct 471 IHGDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 529
Query 729 GRGRARGS---KCFLLTSNAGVIEKEQINMYKE 758
GR G+ I K+ +++ E
Sbjct 530 GRTGRVGNLGLATSFFNERNINITKDLLDLLVE 562
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/230 (18%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+SD+++W K L + E+ FS GI + +D+ + ++ P +
Sbjct 130 KSDEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGNNCP------PHIE 180
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+ S+ + + L +P Q + ++ + CA TG GKT LL
Sbjct 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query 281 HLKKFPQGQKGKV----------------VFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ + + A + Q K+ R R +
Sbjct 241 QIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 301 YGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 349
>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan
troglodytes OX=9598 GN=DDX3Y PE=2 SV=1
Length=660
Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 16/151 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
Query 731 GRARGS---KCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ +++ E
Sbjct 530 TGRVGNLGLATSFFNEKNINITKDLLDLLVE 560
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+SD+++W K L + E+ FS GI + +D+ + S+ P +
Sbjct 128 KSDEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGSNCP------PHIE 178
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + + L +P Q ++ + CA TG GKT LL
Sbjct 179 NFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query 281 HLKKFPQGQKGKVV----------------FFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ K V A + Q K+ R R +
Sbjct 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 347
>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DED1 PE=3 SV=1
Length=630
Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/150 (23%), Positives = 62/150 (41%), Gaps = 16/150 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + N +TI+F +T+ + D L +++ G T +
Sbjct 398 EEKKSVLLDLLSANDNGLTIIFTETKRMADNLADFLYDQ------------GFPATAIHG 445
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ ++ L AFK +G IL+AT+VA G+DI + ++ Y+ + + I
Sbjct 446 DRSQYEREKALAAFK-TGTAPILVATAVAARGLDIPNVSHIVNYDLPSDIDDYVHRIGRT 504
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G N I K +++ E
Sbjct 505 GRAGNIGIATAFFNRNNKNIVKGLVDLLTE 534
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/221 (19%), Positives = 82/221 (37%), Gaps = 31/221 (14%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDK---METSDIQIFYQEDPECQNLSENSCPP--- 229
EK EL+ +++ E DI + + + ++ + PP
Sbjct 111 EKNERLEKELYGIDE-----EPTTQSSGINFDNYDDIPVEASGEGVPEPITAFTAPPLDP 165
Query 230 ---SEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT--FVSLLICEHHLK- 283
V + P + Y + + G++ + CA TG GKT F+ ++ E ++
Sbjct 166 LLVENVKLSRFTKPTPVQKYSVPIVAA---GRDLMACAQTGSGKTGGFLFPVLSESYMNG 222
Query 284 --KFPQG----QKGKV----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ P+ KV + A + Q K+ R R + + G
Sbjct 223 PAEVPETAGAFSSHKVYPTALVMAPTRELVSQIFDEAKKFAYRSWVRPSVVYGGADIGGQ 282
Query 334 VEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + D+++ TP L + L++G + SL+ ++ DE
Sbjct 283 IRNLERGCDLLVATPGRLKDLLERGRV-SLASIKYLVLDEA 322
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo
abelii OX=9601 GN=DDX3Y PE=2 SV=1
Length=658
Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 16/151 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L+ F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 423 LDKRSFLLDLLGATGRDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIH 470
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 471 GDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGR 529
Query 731 GRARGS---KCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ +++ E
Sbjct 530 TGRVGNLGLATSFFNEKNMNITKDLLDLLVE 560
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/230 (20%), Positives = 80/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+SD+++W K L + E+ FS GI + +D+ + S+ P +
Sbjct 128 KSDEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGSNCP------PHIE 178
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N S+ + + L +P Q ++ + CA TG GKT LL
Sbjct 179 NFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPILS 238
Query 281 HLKKFPQGQKGKVV----------------FFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ K V A + Q K+ R R +
Sbjct 239 QIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 298
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 299 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 347
>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3
OS=Xenopus laevis OX=8355 GN=an3 PE=2 SV=1
Length=697
Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/153 (21%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
+++ F+L +++T++FV+T+ DAL++++ G T+
Sbjct 464 EEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFL------------YHEGYACTS 511
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ + ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + +
Sbjct 512 IHGDRSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 570
Query 729 GRGRARGS---KCFLLTSNAGVIEKEQINMYKE 758
GR G+ I K+ +++ E
Sbjct 571 GRTGRVGNLGLATSFFNEKNINITKDLLDLLVE 603
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/230 (18%), Positives = 80/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
R+D+++W K L E+ FS GI + +D+ + S+ P +
Sbjct 171 RNDEDDWSKPLAPNDRVEQELFS---GSNTGINFEKYDDIPVEATGSNCP------PHIE 221
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+ + + + + L +P Q ++ ++ + CA TG GKT LL
Sbjct 222 SFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILS 281
Query 281 HLKKFPQGQKGK----------------VVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G K + A + Q K+ R R +
Sbjct 282 QIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFAYRSRVRPCVV 341
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 342 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 390
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP1 PE=3 SV=1
Length=604
Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/152 (27%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL E + +T++FV+T+ + D L +++ I+ T
Sbjct 382 KNSALLDILINEI----DGLTLVFVETKRMADQLTDFL------------IVQNFKATAI 425
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
+ T ++ L AF+ +G NIL+AT+VA G+DI VI Y+ + + I
Sbjct 426 HGDRTQAERERALHAFR-NGIANILVATAVAARGLDIPNVTNVINYDLPTDIDDYVHRIG 484
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G SN+ I KE +++ E
Sbjct 485 RTGRAGNVGVATSFFNSNSMNIAKELMDLLTE 516
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/224 (19%), Positives = 77/224 (34%), Gaps = 29/224 (13%)
Query 167 WPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQ---IFYQEDPECQNLS 223
+PK +L +E N V GI +D+ + ++ ++ P + L
Sbjct 94 YPKNPRLEMELFGNATDH---VTSGINFDNYDDIPVEASGDNVPEAITEFKSPPLDELLL 150
Query 224 ENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL- 282
EN V N P + Y + + K ++ + CA TG GKT L L
Sbjct 151 EN------VELANFSKPTPVQKYSIPIV---TKNRDLMACAQTGSGKTGGFLFPVLSELF 201
Query 283 --------KKFPQGQKGKV----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
+ K + A + Q KY R + + G
Sbjct 202 LNGPAPLPEHTRHSYMRKCYPSALVLAPTRELAIQIFDEAKKYTYRSWVKPYVVYGGAPI 261
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + ++++ TP L + L++G I ++ ++ DE
Sbjct 262 GQQMRDMDRGCNLLVATPGRLNDLLERGKISLVN-VKYLVLDEA 304
>sp|Q6BY27|DBP2_DEBHA ATP-dependent RNA helicase DBP2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP2 PE=3 SV=1
Length=536
Score = 102 bits (254), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 22/247 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +RK D + M A + + ++ Q E
Sbjct 267 MGFEPQIRKIVDQIRPDRQTLMWSATWPKE--VQALTRDYLNDPIQVTVGSLELAASHTI 324
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
+ + E K + L L E +PE ++F T+ D + N++ +
Sbjct 325 TQLVEVVTEFEKRDRLIKHL-ETATADPEAKCLIFASTKRTCDEITNYLRAD-------- 375
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + +L FK +G I++AT VA GID+ + VI +
Sbjct 376 ----GWPALAIHGDKQQGERDWVLKEFK-TGKSPIMVATDVAARGIDVKGISYVINLDMP 430
Query 719 GN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI-LRLQTWDEA 774
GN + I GR + G+ T N + + + +E N +I L +D
Sbjct 431 GNIEDYVHRIGRTGRAGSTGTAVSFFTDNNSKLGGDLCKIMREA--NQTIPPELMRFDRR 488
Query 775 VFREKIL 781
F I
Sbjct 489 SFGSHIR 495
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/213 (21%), Positives = 79/213 (37%), Gaps = 8/213 (4%)
Query 166 NWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSE 224
N P+ +L K F + + +D+ + D++ + P + E
Sbjct 53 NTPEWDIDSLPKFEKNF---YNEHPDVTARSVQDVNAFRKEHDMKCDGTDIPKPITSFDE 109
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
P + + KP + Q + A+ G++ + A TG GKT L H+
Sbjct 110 AGFPDYVLKEVKQQGFPKPTSIQCQGWPMALSGRDMVGIASTGSGKTLSYCLPSIVHINA 169
Query 285 FP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
P G V+ A + Q + SK+ R T + G + + +
Sbjct 170 QPLLSPGDGPIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGV 229
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I I TP L++ L+ G +L T ++ DE
Sbjct 230 EICIATPGRLIDMLETGK-TNLRRVTYLVLDEA 261
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP2 PE=3 SV=1
Length=554
Score = 102 bits (255), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/229 (18%), Positives = 76/229 (33%), Gaps = 31/229 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A D+ + +E + +
Sbjct 275 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQIGSLELSASHTITQ 334
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ L K + L L E + ++ I+F T+ D + +++
Sbjct 335 IVEVLTDF--------EKRDRLAKHL-ETASQDQDSKIIIFASTKRTCDEITSYLRTE-- 383
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L F+ SG I++AT VA GID+ N V
Sbjct 384 ----------GWPALAIHGDKAQNERDWVLAEFR-SGRSPIMVATDVAARGIDVKGINYV 432
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
I Y+ GN + I GR + G+ T + I + +E
Sbjct 433 INYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMRE 481
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/213 (23%), Positives = 86/213 (40%), Gaps = 9/213 (4%)
Query 166 NWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSEN 225
NW + L E+N + E + + ++ + + +++ I + P+ +
Sbjct 62 NWDEELPNLPVFEKNFYQE----HPDVAQMSESEVIEFRKENEMTISGHDVPKPIRSFDE 117
Query 226 SCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
+ PS V D F KP Q + A+ G++ I A TG GKT L H+
Sbjct 118 AGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINA 177
Query 285 FP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
P G V+ A + Q + SK+ R T + G ++ + +
Sbjct 178 QPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGV 237
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ G +L T ++ DE
Sbjct 238 EILIATPGRLIDMLEIGK-TNLKRVTYLVLDEA 269
>sp|O00571|DDX3X_HUMAN ATP-dependent RNA helicase DDX3X OS=Homo
sapiens OX=9606 GN=DDX3X PE=1 SV=3
Length=662
Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/149 (21%), Positives = 65/149 (44%), Gaps = 16/149 (11%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
F+L +++T++FV+T+ D+L++++ G T+ +
Sbjct 427 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFL------------YHEGYACTSIHGD 474
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 475 RSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 533
Query 733 ARGS---KCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ +++ E
Sbjct 534 RVGNLGLATSFFNERNINITKDLLDLLVE 562
Score = 60.2 bits (144), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/230 (18%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+SD+++W K L + E+ FS GI + +D+ + ++ P +
Sbjct 130 KSDEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGNNCP------PHIE 180
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+ S+ + + L +P Q + ++ + CA TG GKT LL
Sbjct 181 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 240
Query 281 HLKKFPQGQKGKV----------------VFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ + + A + Q K+ R R +
Sbjct 241 QIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 300
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 301 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 349
>sp|Q54CE0|DDX17_DICDI Probable ATP-dependent RNA helicase ddx17
OS=Dictyostelium discoideum OX=44689 GN=ddx17 PE=3 SV=1
Length=785
Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/151 (25%), Positives = 61/151 (40%), Gaps = 16/151 (11%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
E +L + + I+F +TR VD L+ ++ +G +
Sbjct 613 FEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQ------------FSGFKSIGIH 660
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG- 729
+ P + +L FK +G I+IAT VA G+DI V+ Y++ + I G
Sbjct 661 GNKSQPERDFVLSQFK-NGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGR 719
Query 730 --RGRARGSKCFLLTSNAGVIEKEQINMYKE 758
R A G LLT++ + E I + E
Sbjct 720 TARAGASGVSYSLLTTDNARLANELIKVLTE 750
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/181 (23%), Positives = 76/181 (42%), Gaps = 5/181 (3%)
Query 198 EDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMK 256
E++E + + + +E P + P + + + F P Q + A+K
Sbjct 361 EEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALK 420
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKVV-FFANQIPVYEQQKSVFSKY 313
G++ I A TG GKT LL H+ P + G +V A + Q + +K+
Sbjct 421 GRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKF 480
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
T + G +++ V + + +I+I TP L++ L+ G +L T ++ DE
Sbjct 481 GGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGK-TNLRRVTYLVLDE 539
Query 374 C 374
Sbjct 540 A 540
>sp|P53327|SLH1_YEAST RQC trigger complex helicase SLH1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=SLH1 PE=1 SV=2
Length=1967
Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/169 (25%), Positives = 73/169 (43%), Gaps = 19/169 (11%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKF----------PQGQKGKVVFFANQIPVYEQQ 306
+N +ICAPTG GKT ++LL + +K+F Q KV++ A + +
Sbjct 303 NENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEI 362
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTIPSLS 364
FSK +V ++G + + +I+ TP+ +V G +S
Sbjct 363 VDKFSKKLAPFNIQVRELTGDMQ---LTKAEILATQVIVTTPEKWDVVTRKANGDNDLVS 419
Query 365 IFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
L+I DE H + + ++ L Q SS + ++IGL+A+
Sbjct 420 KVKLLIIDEVHLLHEDRGSVIETLVARTLRQ--VESSQSMIRIIGLSAT 466
Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/157 (22%), Positives = 70/157 (45%), Gaps = 12/157 (8%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS-KYFE 315
+N + +PTG GKT V+ L H K FP K+V+ A + ++ + K
Sbjct 1155 NENAFVGSPTGSGKTIVAELAIWHAFKTFP---GKKIVYIAPMKALVRERVDDWRKKITP 1211
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL--SIFTLMIFDE 373
G +V ++G + + V + I+I TP+ + + + +L+I DE
Sbjct 1212 VTGDKVVELTGDSLPDPKD---VHDATIVITTPEKF-DGISRNWQTRKFVQDVSLIIMDE 1267
Query 374 CH-NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 409
H S + P ++ + ++ + P+ +++G++
Sbjct 1268 IHLLASDRGPILEMIVSRMNYISSQTKQPV-RLLGMS 1303
Score = 37.1 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 39/180 (22%)
Query 617 ILQEEYHLNPETITILFV----KTRALVDALKNW------------IEGNPKLSFLKPGI 660
+ +P+ ++FV +TR L + I+ +L + +
Sbjct 1359 VFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQV 1418
Query 661 L-------TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
G + G+ + F+ + ILIATS G+++ +LVI
Sbjct 1419 TDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKN-KIQILIATSTLAWGVNLPA-HLVI 1476
Query 714 L-----YEYV------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+ ++ ++ ++Q GR + T A V KE M+ + +N
Sbjct 1477 IKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPA---YDTTGTAIVYTKESKKMFYKHFLN 1533
>sp|P16381|DDX3L_MOUSE Putative ATP-dependent RNA helicase Pl10
OS=Mus musculus OX=10090 GN=D1Pas1 PE=1 SV=1
Length=660
Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 64/149 (43%), Gaps = 16/149 (11%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
F+L +++ ++FV+T+ D+L++++ G T+ +
Sbjct 426 KRSFLLDLLNATGKDSLILVFVETKKGADSLEDFL------------YHEGYACTSIHGD 473
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
+ ++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + + GR
Sbjct 474 RSQRDREEALHQFR-SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 532
Query 733 ARGS---KCFLLTSNAGVIEKEQINMYKE 758
G+ I K+ +++ E
Sbjct 533 RVGNLGLATSFFNERNINITKDLLDLLVE 561
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/230 (17%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
++D+++W K L + E+ FS GI + +D+ + ++ P +
Sbjct 129 KADEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGNNCP------PHIE 179
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+ S+ + + L +P Q + ++ + CA TG GKT LL
Sbjct 180 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query 281 HLKKFPQGQKGKV----------------VFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ + + A + Q K+ R R +
Sbjct 240 QIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 300 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 348
>sp|Q62095|DDX3Y_MOUSE ATP-dependent RNA helicase DDX3Y OS=Mus
musculus OX=10090 GN=Ddx3y PE=1 SV=2
Length=658
Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/153 (21%), Positives = 67/153 (44%), Gaps = 16/153 (10%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
+L+ F+L +++T++FV+T+ D+L+N++ + + G +
Sbjct 422 EELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQE------RYACTSIHGDRS 475
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
++ L F+ SG IL+AT+VA G+DI+ VI ++ ++ + +
Sbjct 476 ------QKDREEALHQFR-SGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 528
Query 729 GRGRARGS---KCFLLTSNAGVIEKEQINMYKE 758
GR G+ I K+ +++ E
Sbjct 529 GRTGRVGNLGLATSFFNERNLNITKDLLDLLVE 561
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 44/230 (19%), Positives = 81/230 (35%), Gaps = 26/230 (11%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
RSD+++W K L + E+ FS GI + +D+ + ++ P +
Sbjct 129 RSDEDDWSKPLPPSERLEQELFS---GGNTGINFEKYDDIPVEATGNNCP------PHIE 179
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N S+ + + L +P Q + ++ + CA TG GKT LL
Sbjct 180 NFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILS 239
Query 281 HLKKFPQGQKGKV----------------VFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+ G+ K + A + Q K+ R R +
Sbjct 240 QIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 299
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + +++ TP LV+ +++G I L ++ DE
Sbjct 300 YGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIG-LDFCKYLVLDEA 348
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DED1
PE=3 SV=1
Length=672
Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 59/145 (41%), Gaps = 16/145 (11%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
++ + N +TI+F +T+ + D L +++ G T + +
Sbjct 433 VILDLLSANENGLTIVFTETKRMADNLADYLYDQ------------GFPATAIHGDRSQY 480
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
++ L AFK +G IL+AT+VA G+DI + VI Y+ + + I GR
Sbjct 481 EREKALAAFK-NGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGN 539
Query 734 RGSKCFLLTSNAGVIEKEQINMYKE 758
G N + K I + E
Sbjct 540 VGIATAFFNRNNKNVVKGLIELLSE 564
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 67/188 (36%), Gaps = 30/188 (16%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNL-------------YSPFKPRNYQLELALPAMKGKN 259
Y + P + + P + + L P + Y + + G++
Sbjct 169 YDDIPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAA---GRD 225
Query 260 TIICAPTGCGKT--FVSLLICEHHLKK---FPQGQKGK--------VVFFANQIPVYEQQ 306
+ CA TG GKT F+ ++ E ++K P+ ++ A + Q
Sbjct 226 LMACAQTGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQI 285
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ R R + G + + D+++ TP L + L +G + SL+
Sbjct 286 YEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKV-SLANI 344
Query 367 TLMIFDEC 374
++ DE
Sbjct 345 RYLVLDEA 352
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis
thaliana OX=3702 GN=RH30 PE=1 SV=2
Length=591
Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 67/188 (36%), Gaps = 19/188 (10%)
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILF 633
+ + + + + K + + + K L +L+ L + ++F
Sbjct 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLK---QLMDGSKILIF 416
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
V+T+ D + + + G + T + +L FK SG I
Sbjct 417 VETKRGCDQVTRQLR------------MDGWPALAIHGDKTQSERDRVLAEFK-SGRSPI 463
Query 694 LIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
+ AT VA G+D+ V+ Y++ I I GR A+G T + +
Sbjct 464 MTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
Query 751 EQINMYKE 758
E + + +E
Sbjct 524 ELVKILQE 531
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/171 (24%), Positives = 72/171 (42%), Gaps = 5/171 (3%)
Query 208 DIQIFYQEDPECQNLSENSC-PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPT 266
DI + ++ P+ + +++ P + + +P Q + A+KG++ I A T
Sbjct 152 DISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAET 211
Query 267 GCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
G GKT LL H+ P Q V+ A + Q + K+ R G R T
Sbjct 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTC 271
Query 324 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I G + + + +I+I TP L++ L + +L T ++ DE
Sbjct 272 IYGGAPKGPQIRDLRRGVEIVIATPGRLIDML-ECQHTNLKRVTYLVLDEA 321
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis
thaliana OX=3702 GN=RH20 PE=2 SV=1
Length=501
Score = 100 bits (249), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 19/191 (10%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + + K D +E+ K L +L++ +
Sbjct 291 VEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMD---GSRI 347
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
++F+ T+ D + + + G + + + + +L F+ SG
Sbjct 348 LVFLDTKKGCDQITRQLR------------MDGWPALSIHGDKSQAERDWVLSEFR-SGK 394
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
I+ AT VA G+D+ VI Y++ G+ + I GR A+G+ T
Sbjct 395 SPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANAR 454
Query 748 IEKEQINMYKE 758
KE N+ +E
Sbjct 455 FAKELTNILQE 465
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 5/181 (3%)
Query 198 EDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK 256
++E+ + +I + ++ P ++ + P + + +P Q + AMK
Sbjct 76 TEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMK 135
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKY 313
G++ I A TG GKT LL H+ P G V+ A + Q + SK+
Sbjct 136 GRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ T I G + V + + +I+I TP L++ ++ +L T ++ DE
Sbjct 196 GSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNN-TNLRRVTYLVLDE 254
Query 374 C 374
Sbjct 255 A 255
>sp|Q9V0A9|HELS_PYRAB ATP-dependent DNA helicase Hel308 OS=Pyrococcus
abyssi (strain GE5 / Orsay) OX=272844 GN=hel308 PE=3
SV=1
Length=715
Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats.
Identities = 68/431 (16%), Positives = 150/431 (35%), Gaps = 58/431 (13%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G+N ++ PT GKT ++ + + L + GK V+ + E++ F +
Sbjct 37 LEGENLLVAIPTASGKTLIAEIAIANKL----LEEGGKAVYIVPLKALAEEKFREFKD-W 91
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
ER G +V +G ++ + DIII T + + L+ G+ + +++ DE
Sbjct 92 ERLGLKVAMATGDYDSK---DEWLGKYDIIIATAEKFDSLLRHGS-SWIRDVKMLVIDEI 147
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
H + ++ ++ G Q+IGL+A++G N +E +++
Sbjct 148 HLIGSRD--RGATLEFIITQMLG----RAQIIGLSATIG-----NPEELAEWLNAKLIRS 196
Query 435 DASVIATVK---------------HNLEELEQVVYKPQKFFR--KVESRISDKFKYIIAQ 477
D + K E++VY K + V + K + +
Sbjct 197 DWRPVKLRKGVFYQGFVFWEDGGSERYNSWEELVYDAVKKGKGALVFVNMRRKAEKTALE 256
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
L + ++ R K+L L ++ E+ + F + R+
Sbjct 257 LAKKVKNYLDR--KELRELRELAESLEENPTNEKLAKALLSGVA-FHHAGLGRDERVLVE 313
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN----VRAAGFDEIEQDLTQRFEEK 593
++ +S ++D + + E++Q + + +
Sbjct 314 DNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMERIPVLEVQQMMGRAGRPR 373
Query 594 LQELESVSRDPSNENP----------KLEDLCFILQEEYHLNPETITIL----FVKTRAL 639
E+ + E P K E L L E L + + ++ + + + +
Sbjct 374 YDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILRSQILALIATFGYSEFKEI 433
Query 640 VDALKNWIEGN 650
D L+ +
Sbjct 434 YDFLERTFYAH 444
Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 32/181 (18%), Positives = 57/181 (31%), Gaps = 44/181 (24%)
Query 630 TILFVKTRALVD-----------------------ALKNWIEGNPKLSFLKPGILTGRGK 666
++FV R + L +E NP L +L+G
Sbjct 240 ALVFVNMRRKAEKTALELAKKVKNYLDRKELRELRELAESLEENPTNEKLAKALLSGV-- 297
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-------YEYVG 719
+ G+ + + D F+ G +++AT GI+ ++I +
Sbjct 298 AFHHAGLGRDERVLVEDNFR-KGLIKVVVATPTLSAGINTPAFRVIIRDTWRYSEFGMER 356
Query 720 NVIKMIQT-RGRGRAR------GSKCFLLTSNAGVIEKEQINMYKEKMM----NDSILRL 768
+ +Q GR + T ++ I EK+ N+SILR
Sbjct 357 IPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILRS 416
Query 769 Q 769
Q
Sbjct 417 Q 417
>sp|Q59PR3|DBP8_CANAL ATP-dependent RNA helicase DBP8 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP8
PE=3 SV=1
Length=440
Score = 99.9 bits (247), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 21/201 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL ++ ++FV + L+ + +
Sbjct 238 KEAYLNSIL--HLEQFKDSTAVIFVNRTTTAEVLRRMLRK------------LDFRVASL 283
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++ M + L FKA G ILIAT VA G+DI LVI ++ + I G
Sbjct 284 HSEMPQSERTNSLHRFKA-GAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVG 342
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK- 788
R AR + S G + ++I +E++ L D+ V +E + ++
Sbjct 343 R-TARAGRKGDAVSIIGEKDIDRIQSIEERINKKMELLEDVNDDNVIKESLSATSVAKRE 401
Query 789 ----FIRDSQEKPKPVPDKEN 805
+++ + K + K++
Sbjct 402 SLMEMDKENFGERKKINRKKH 422
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/137 (20%), Positives = 43/137 (31%), Gaps = 5/137 (4%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
+ P Q +KG + I A TG GKT + P G G +
Sbjct 22 YTPTAIQSACIPAILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLI--LTPTR 79
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG-- 358
+ Q F+ +V + G + +I TP L +++
Sbjct 80 ELALQIAEQFAALGANMNIKVAVVVGGEDFVQQTLALQRKPHFVIATPGRLADHILNSGE 139
Query 359 -TIPSLSIFTLMIFDEC 374
TI L ++ DE
Sbjct 140 ETISGLRRVKYLVLDEA 156
>sp|Q54XN7|Y8827_DICDI Uncharacterized helicase DDB_G0278827 OS=Dictyostelium
discoideum OX=44689 GN=DDB_G0278827 PE=3 SV=1
Length=1816
Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats.
Identities = 123/641 (19%), Positives = 234/641 (37%), Gaps = 95/641 (15%)
Query 154 KLVECLLRSDKENWPKTL---KLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQ 210
K++ L+ D N T+ + L N ++ W ++ + ++ D+ ++ + I+
Sbjct 734 KILSTKLQIDFANRFYTISKSLIGLSDLSNFINDHWKLK--LPKLDESDVGNQQLKNSIE 791
Query 211 IFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGK 270
+ P+ L N+ + + FKP +Q+EL K ++ +ICA T GK
Sbjct 792 FQLKHSPDT--LIRNTGS----VEDSRVRHFKPDAWQVELLDIVDKRESALICASTSSGK 845
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
TF+S E LK + G VVF + Q + ++++ I+ +
Sbjct 846 TFISFYCFEQILK---ESNDGIVVFVCPTKALVNQMYAEVLGRYDKN---YQAINHRPSN 899
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT--------LMIFDECHNTSKQHP 382
+ V + + I T QIL+ + I LSI +IFDE H
Sbjct 900 HKMVGVFTRDFRLNIETCQILITVPQCLEILFLSIMNTHFIQRCRYIIFDEVHQI----- 954
Query 383 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV----------GDAKNTDEALDYICKLCA 432
+ + ++ L + P + L+A++G D + Y +
Sbjct 955 ASSVDGAIWERLLVFNPAPF---LALSATLGNLTDFHNFLKKIDPNRKVSLIHYQSRFND 1011
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVE------SRISDKFKYI------IAQLMR 480
+ + T + + +P ++ S IS K I + Q+++
Sbjct 1012 LKNFFLCQTPAKDNKSFPTYTIEPLHPMATLDQKKTGLSDISPDLKLIAGEAIQMYQVLK 1071
Query 481 DTESLAKRICKDLENLSQ-IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ K D I N++F +K I + +P E+ + KAL
Sbjct 1072 EKLGYEKVNHLDPVKFFANIPNKQFNLEKQHIEIYQAELKQFYTNLPSMTEKQLVVKALT 1131
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL-QELE 598
KYND+L + + + + L+ ++ A F + L R +++ ++
Sbjct 1132 S-----PKYNDSLKFDWASEITNIVLELQK--QDLLPALFFSFNRSLCSRLAQRVYNDIT 1184
Query 599 SVSRDPSNENPKLE----------DLCFILQEEYHLNPETITILFVK-TRALVDALK--- 644
+ +P+ K + L L + +PE + + +K RA +D LK
Sbjct 1185 HRNTNPNIIEEKKQLDLVIERFQKSLGRALADLEPNDPEKMELERLKAKRASLDYLKPQF 1244
Query 645 -NWIEG--------NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
N + +P L GI G ++N + F++ ++
Sbjct 1245 GNLLSSDIDEKVKKDPLAPALTQGIAAHHGGCDKNYLRNVEY------LFRSK-KIQVVF 1297
Query 696 ATSVADEGIDIAQCNLVILYEYV-GNVIKMIQTRGRGRARG 735
ATS G++ + V L + NV+ Q GR RG
Sbjct 1298 ATSTLAVGVNAPAKSSVFLGDSPYLNVLTSKQCAGRAGRRG 1338
>sp|Q9U2G0|U520_CAEEL U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Caenorhabditis elegans OX=6239 GN=snrp-200 PE=3
SV=1
Length=2145
Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/204 (21%), Positives = 77/204 (38%), Gaps = 16/204 (8%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN-TIICAPTGCGKTFVSLL 276
E + L S P R Q L A++ K ++CAPTG GKT V+LL
Sbjct 451 EGEKLVSVSELPKWAQPAFDGYKSLNRI-QSRLCDSALRSKEHLLLCAPTGAGKTNVALL 509
Query 277 ICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
+ K+V+ A + ++ FSK G V ++G
Sbjct 510 TMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQM 569
Query 331 NVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQ-HPYNMIM 387
+ ++ +I+ TP+ + + + G + L+I DE H P +
Sbjct 570 S---KEQFMATQVIVCTPEK-YDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESI 625
Query 388 FNYLDQKLGGSSGPLPQVIGLTAS 411
+++ + +++GL+A+
Sbjct 626 VVRTIRQMEQNHDEC-RLVGLSAT 648
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/205 (19%), Positives = 74/205 (36%), Gaps = 17/205 (8%)
Query 217 PECQNLSENSCPPSEVSD--------TNLYSPFKPRNYQ-LELALPAMKGKNTIICAPTG 267
P + L P S V++ + + F P Q + +N I+CAP G
Sbjct 1290 PPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFES--NENVIVCAPNG 1347
Query 268 CGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
GKT ++ L H + P + K V+ + + + + + E +
Sbjct 1348 SGKTAIAELAVLRHFENTP---EAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVL--L 1402
Query 328 TAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQHPYNMI 386
T E ++ + +II TP+ N ++ S+ L I D+ H +
Sbjct 1403 TGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFE 1462
Query 387 MFNYLDQKLGGSSGPLPQVIGLTAS 411
+ + + +V+ L++S
Sbjct 1463 VVCSRTRYISSQLESAVRVVALSSS 1487
>sp|Q6CXW0|DBP8_KLULA ATP-dependent RNA helicase DBP8 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP8 PE=3 SV=1
Length=435
Score = 99.5 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/159 (24%), Positives = 62/159 (39%), Gaps = 17/159 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L IL E ++ ++ I+FV + L+ ++
Sbjct 238 EHVKESYLYQILTSEKYV--KSSCIIFVNRTVTAEILRRTLKS------------LDVRV 283
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
T+ ++ M + + F+A +LIAT VA G+DI LV+ Y+ GN I
Sbjct 284 TSLHSQMPQQERTNSVQRFRAQ-AARVLIATDVASRGLDIPIVELVVNYDIPGNPDTFIH 342
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR RA R + + + E I K M +
Sbjct 343 RAGRTARAGRHGESLCFVTEKDIQRVEAIEERINKKMEE 381
Score = 59.4 bits (142), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 46/125 (37%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I A TG GKT + PQG G + + Q F+
Sbjct 37 EILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFG--IVLTPTRELAMQIAEQFTA 94
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ RV + G + ++ + II TP L +++ TI L +
Sbjct 95 FGSAMNIRVAIVVGGESIVQQAIELQKRPHFIIATPGRLAHHVLNSGEDTIGGLKRVKFL 154
Query 370 IFDEC 374
+ DE
Sbjct 155 VLDEA 159
>sp|Q8SR63|RRP3_ENCCU ATP-dependent rRNA helicase RRP3 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=RRP3 PE=3 SV=1
Length=400
Score = 98.7 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 85/243 (35%), Gaps = 19/243 (8%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+ L + + +++ T R EK + + ++ K ++ L
Sbjct 173 EKRQTLLFTATMSDEISKLSSSILKRPKTIRTAEKYETVPALKEYYLFVAMKWKN--SAL 230
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
E ++ I+FV + + G + ++ +
Sbjct 231 VELLEMSQGMSVIVFVSMCVTARVMSLALAR------------LGFCSEALHGELSQEKR 278
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGS 736
+ + +FK S N+L+ T + G+DI+ +LVI ++ + I GR RA R
Sbjct 279 EEAMRSFKES-RFNVLVCTDLGSRGLDISHVDLVINFDVPKSGKDYIHRVGRTARAGRSG 337
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE--AVFREKILHIQTHEKFIRDSQ 794
L + V + ++I EK + + + + + A E I Q K R
Sbjct 338 TAITLVTQYDVEQIQKIEFTLEKKLEEFKMMKKNFGTICARIEEAIQEAQETLKEERKRN 397
Query 795 EKP 797
+P
Sbjct 398 RRP 400
Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (36%), Gaps = 3/146 (2%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
S + +P Q ++ + G + I + TG GKT +L HL +
Sbjct 10 ESLIKTCQEKGITRPTEVQRQVIPAVLGGGDVIAVSQTGSGKTLAFVLPIVSHL--LQKN 67
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
+ + A + Q + F+ G RV + G NV Q+ + +++ TP
Sbjct 68 RSFYCLVVAPTRELSSQ-IAECFNMFQATGLRVCLLVGGANFNVQANQLSKRPHVVVGTP 126
Query 349 QILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ K + DE
Sbjct 127 GRIAEHVLKTKSFRTERVRKFVLDEA 152
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase
prp-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-5
PE=3 SV=1
Length=1194
Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/251 (18%), Positives = 84/251 (33%), Gaps = 45/251 (18%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +L E Y + + +++FV+ + D L + G G +
Sbjct 794 KFNRLLELLGELYADDDDVRSLIFVERQEKADDLLRELLRR------------GYGCMSI 841
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ--- 726
+ G + + FK G ILIATS+A G+D+ Q LVI Y+ ++ +
Sbjct 842 HGGKDQEDRNSTISDFK-KGVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAG 900
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK---------MMNDSILR---------- 767
GR G+ +T ++ M +
Sbjct 901 RTGRAGNTGTAVTFITEEQENCASGIAKALEQSGQPVPDRLNEMRKAWKEKVKAGKAKDA 960
Query 768 -------LQTWDEAVFREKILHIQTHEKFIRD---SQEKPKPVPDKENKKLLCRKCKALA 817
L+ D+ ++ +TH+ + ++ P +K++K + + A
Sbjct 961 SGFGGKGLEKLDKDREAARMRERKTHKAEGEEDDVKEDAPAEDGEKKDKTKVAIQSAVSA 1020
Query 818 CYTADVRVIEE 828
+ D E
Sbjct 1021 IVSRDASKAET 1031
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 70/180 (39%), Gaps = 14/180 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKV-VFFAN 298
KP Q++ M G++ I A TG GKT L H+K G G + +
Sbjct 583 KPTPIQMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRHVKDQDPVTGDDGAIALIMTP 642
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK- 357
+ Q S + + RV G A + ++ +II+ TP L++ L
Sbjct 643 TRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAEIIVATPGRLIDLLAAN 702
Query 358 -GTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYL----DQKLGGSSGPLPQVI-GLT 409
G + +L T ++ DE P +M + D++ S +P++I LT
Sbjct 703 GGRVTNLKRATYLVLDEADRMFDMGFEP--QVMKIFNNVRPDRQTILFSATMPRIIDALT 760
>sp|Q5W5U4|DDX4_BOVIN Probable ATP-dependent RNA helicase DDX4
OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Length=729
Score = 101 bits (250), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 18/167 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K E L IL+ + T++FV+T+ D + ++ T+
Sbjct 528 SKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK------------ISTTS 571
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ L F+ G +L+ATSVA G+DI VI ++ + + +
Sbjct 572 IHGDREQREREQALGDFRC-GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 630
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R S + Q+ K+++D+ + W E +
Sbjct 631 GR-TGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEI 676
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 40/170 (24%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + G++ + CA TG GKT
Sbjct 292 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIIQG---GRDLMACAQTGSGKT 341
Query 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct 342 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 401
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 402 YGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIG-LRQVKYLVLDEA 450
>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2
SV=2
Length=792
Score = 101 bits (250), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/153 (21%), Positives = 59/153 (39%), Gaps = 20/153 (13%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ KL L IL+ + + + ++F T+ + D L + G +
Sbjct 379 SEKLRRLEQILRSQ---DSGSKVLIFCTTKRMCDQLARTLTRQ-------------FGAS 422
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKM 724
+ + ++ +L F+ SG IL+AT VA G+DI +VI Y++ + +
Sbjct 423 AIHGDKSQSEREKVLSHFR-SGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHR 481
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
I GR A G + I + +
Sbjct 482 IGRTGRAGATGVAYTFFCDQDSKYAADLIKILE 514
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/271 (18%), Positives = 96/271 (35%), Gaps = 14/271 (5%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ 287
PP + + P Q + A++ ++ + A TG GKT LL H+K+
Sbjct 158 PPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQN 217
Query 288 G--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIII 345
V+ A + Q K+ T + G + + + D+++
Sbjct 218 NPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVV 277
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405
TP L + L+ I SL + ++ DE + F +K+ P Q
Sbjct 278 ATPGRLNDILEMRRI-SLKQVSYLVLDEADRMLD------MGFEPQIRKIVKEIPPRRQT 330
Query 406 IGLTASVGVGDAKNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+ TA+ + ++ L + + S+D V + EL P + R++E
Sbjct 331 LMYTATWPKEVRRIAEDLLVHPVQVTIGSVDELVANSAITQNVELIT----PSEKLRRLE 386
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
+ + + T+ + ++ + L
Sbjct 387 QILRSQDSGSKVLIFCTTKRMCDQLARTLTR 417
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Botryotinia fuckeliana (strain B05.10) OX=332648
GN=prp5 PE=3 SV=1
Length=1151
Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/220 (21%), Positives = 78/220 (35%), Gaps = 29/220 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L E Y+ + + T++FV + D L + G
Sbjct 783 EEKEKFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRK------------GYP 830
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + G + +D FKA G I+IATSVA G+D+ Q LV+ ++ ++ +
Sbjct 831 CMSIHGGKDQVDRDSTIDDFKA-GVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYV 889
Query 726 Q---TRGRGRARGSKCFLLTSNAGV----IEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
GR G+ +T I K +E + +R D+
Sbjct 890 HRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALEQSGQEVPDRLNEMRKSYKDKVKSGA 949
Query 779 KI---------LHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
K L E+ ++E +P KLL
Sbjct 950 KKESSGFRGKGLERFDAEREATKARELVQPAASTAPPKLL 989
Score = 79.8 bits (195), Expect = 7e-14, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 112/313 (36%), Gaps = 22/313 (7%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLEL 250
+ E E + ++E I++ ++ P+ + D ++ P + Q++
Sbjct 525 AEMTEAEIADLRLELDGIKVAGKDVPKPVQKWSQCGLDVKSLDVITKLGYERPTSIQMQA 584
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFANQIPVYEQQK 307
M G++ I A TG GKT LL H++ +G G + + + Q
Sbjct 585 IPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKGSDGPIGLIMTPTRELATQIH 644
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSI 365
+ + G R G + + +II+ TP ++ L G + +L
Sbjct 645 KECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCTPGRMIELLAANSGRVTNLQR 704
Query 366 FTLMIFDECHNT--SKQHPYNMIMFNYL----DQKLGGSSGPLPQVIGLTASVGVGDAKN 419
T ++ DE P +M + +++ S +P+++ AK
Sbjct 705 VTYVVLDEADRMFDMGFEP--QVMKVFNNIRPNRQTILFSATMPRIM-------DALAKK 755
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
T ++ I S+ A I + EE E+ ++ + ++ + D I
Sbjct 756 TLQSPVEIVVGGRSVVAPEITQIVEVREEKEKF-HRLLELLGELYNTDEDARTLIFVDRQ 814
Query 480 RDTESLAKRICKD 492
+ L K + +
Sbjct 815 EKADDLLKDLMRK 827
>sp|Q9VUV9|U520_DROME U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Drosophila melanogaster OX=7227 GN=Brr2 PE=2
SV=4
Length=2142
Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/174 (21%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQ 299
Q L A+ +N ++CAPTG GKT V+LL + K K+++ A
Sbjct 485 QSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPM 544
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ ++ F + + V+ ++G ++ + + +I+ TP+ + K G
Sbjct 545 KSLVQEMVGNFGRRLACYNLTVSELTG---DHQLTREQIAATQVIVCTPEKWDIITRKGG 601
Query 359 TIPSLSIFTLMIFDECHNTSK-QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+S+ L+I DE H + P + + + + + +++GL+A+
Sbjct 602 ERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIETTQEEV-RLVGLSAT 654
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 74/208 (36%), Gaps = 17/208 (8%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK------GKNTIICAPT 266
+ P + L P S + S + R Q + +N + APT
Sbjct 1293 EKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPT 1352
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GK ++ + F + V+ ++ + + + + F +V ++G
Sbjct 1353 GSGKMTIAEFAIM---RLFTTQSDARCVYLVSEEALADLVFADWHSKFGSLDIKVVKLTG 1409
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI--FTLMIFDECHNTSK-QHPY 383
T ++ +++ ++I T + L + ++ L I DE + P
Sbjct 1410 ETGTDL---KLIAKGQLVITTADKW-DVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPV 1465
Query 384 NMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
I+ + + + + +++ L+AS
Sbjct 1466 LEIVCSRM-RYISSQIEKQIRIVALSAS 1492
>sp|Q4P331|IF4A_USTMA ATP-dependent RNA helicase eIF4A OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=TIF1 PE=3
SV=1
Length=411
Score = 98.3 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 60/154 (39%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L +R E L+ ++ E+ KL+ LC + Y T ++
Sbjct 227 EVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLC----DLYETVTITQAVI 282
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M ++ I+ F+ SG
Sbjct 283 FCNTRRKVDWLTDKLTSREFTV------------SAMHGDMEQAQREVIMREFR-SGSSR 329
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 330 VLITTDLLARGIDVQQVSLVINYDLPSNRENYIH 363
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/144 (19%), Positives = 54/144 (38%), Gaps = 13/144 (9%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGK 292
Y +P Q +P +KG + I A +G GKT +++L + P + +
Sbjct 54 YAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQ-----RIDPSIKAVQ 108
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + +Q + V + G T + ++ E +++ TP +
Sbjct 109 ALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVY 168
Query 353 NNLKKGTI--PSLSIFTLMIFDEC 374
+ + + L +F L DE
Sbjct 169 DMINRRAFKTDQLKMFCL---DEA 189
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Length=2136
Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/174 (22%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQ 299
Q +L A++ +N ++CAPTG GKT V+L+ + K K+++ A
Sbjct 485 QSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 544
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ ++ F K +G V ++G ++ ++ + II+ TP+ + K G
Sbjct 545 RSLVQEMVGSFGKRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGG 601
Query 359 TIPSLSIFTLMIFDECHNTSKQ-HPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L+I DE H P + + + + + ++IGL+A+
Sbjct 602 ERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDV-RLIGLSAT 654
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/211 (19%), Positives = 85/211 (40%), Gaps = 20/211 (9%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPR-----NYQLELALPAMK-GKNTIICAPTGCGK 270
P + L P S + ++ S ++ + Q ++ N + APTG GK
Sbjct 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERHGYRVTGISGATA 329
T + L Q +G+ V+ + EQ + + F +R +V ++G T+
Sbjct 1357 TICAEFAILRML---LQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1413
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI--FTLMIFDECHNTSK-QHPYNMI 386
++ +++ +III TP+ + L + ++ L + DE H P +
Sbjct 1414 TDL---KLLGKGNIIISTPEKW-DILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEV 1469
Query 387 MFNYLDQKLGGSSGPLP-QVIGLTASVGVGD 416
+ + + + S P +++ L++S+
Sbjct 1470 ICSRM--RYISSQIERPIRIVALSSSLSNAK 1498
>sp|A4RN46|PRP5_PYRO7 Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617
/ FGSC 8958) OX=242507 GN=PRP5 PE=3 SV=1
Length=1012
Score = 101 bits (250), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 58/142 (41%), Gaps = 16/142 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+E K L +L E Y + + +++FV+ + D L + G G
Sbjct 607 DEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRK------------GYG 654
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + G + + FK SG ++IATSVA G+D+ Q LV+ Y+ ++ +
Sbjct 655 CMSLHGGKDQVDRDSTISDFK-SGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYV 713
Query 726 Q---TRGRGRARGSKCFLLTSN 744
GR G+ +T
Sbjct 714 HRAGRTGRAGNTGTAVTFVTEE 735
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 63/392 (16%), Positives = 134/392 (34%), Gaps = 31/392 (8%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALP 253
E E E ++E I++ ++ P+ + D + KP Q++
Sbjct 352 TEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPV 411
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFANQIPVYEQQKSVF 310
M G++ + A TG GKT LL H+K + +G + + + Q
Sbjct 412 IMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDC 471
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTL 368
+ + G R G + + +I++ T +++ L +G + SL T
Sbjct 472 KPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTY 531
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYIC 428
++ DE MF+ G + ++ V + T +
Sbjct 532 IVLDEADR----------MFD------MGFEPQVMKIFA-----NVRPDRQTVLFSATMP 570
Query 429 KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS--DKFKYIIAQLMRDTESLA 486
K+ +L V+ + VV ++ S ++ ++ +L +D + +
Sbjct 571 KIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVR 630
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
I + + + RE + Y + K + D +S +C + + R
Sbjct 631 SLIFVERQEKADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAAR 690
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
+ + + DA ++L+D+ G
Sbjct 691 GLDVKQL--KLVVNYDAPNHLEDYVHRAGRTG 720
>sp|Q6GWX0|DDX4_PIG Probable ATP-dependent RNA helicase DDX4 OS=Sus
scrofa OX=9823 GN=DDX4 PE=2 SV=1
Length=722
Score = 100 bits (248), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K E L IL+ + T++FV+T+ D + ++ T+
Sbjct 524 SKREKLLEILRNI----GDERTMVFVETKKKADFIATFLCQEK------------ISTTS 567
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ L F+ G +L+ATSVA G+DI VI ++ + + +
Sbjct 568 IHGDREQREREQALGDFRF-GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 626
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R S + + K++ D+ + W E +
Sbjct 627 GR-TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 672
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 288 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIILA---GRDLMACAQTGSGKT 337
Query 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct 338 AAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVI 397
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 398 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG-LKQIKYLVLDEA 446
>sp|Q9NQI0|DDX4_HUMAN Probable ATP-dependent RNA helicase DDX4
OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2
Length=724
Score = 99.9 bits (247), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K E L IL+ + T++FV+T+ D + ++ T+
Sbjct 526 SKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK------------ISTTS 569
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ L F+ G +L+ATSVA G+DI VI ++ + + +
Sbjct 570 IHGDREQREREQALGDFRF-GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 628
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R S + + K++ D+ + W E +
Sbjct 629 GR-TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 674
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 290 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIILA---GRDLMACAQTGSGKT 339
Query 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct 340 AAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVI 399
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 400 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG-LKQIKYLVLDEA 448
>sp|Q4R5S7|DDX4_MACFA Probable ATP-dependent RNA helicase DDX4
OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1
Length=725
Score = 99.9 bits (247), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K E L IL+ + T++FV+T+ D + ++ T+
Sbjct 527 SKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK------------ISTTS 570
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ L F+ G +L+ATSVA G+DI VI ++ + + +
Sbjct 571 IHGDREQREREQALGDFRC-GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 629
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R S + + K++ D+ + W E +
Sbjct 630 GR-TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEI 675
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 291 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIILA---GRDLMACAQTGSGKT 340
Query 272 FVSLLICEHHLKK-------FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ F + Q+ + + A + Q K+ R I
Sbjct 341 AAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVI 400
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 401 YGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIG-LKQIKYLVLDEA 449
>sp|Q61496|DDX4_MOUSE ATP-dependent RNA helicase DDX4 OS=Mus musculus
OX=10090 GN=Ddx4 PE=1 SV=2
Length=702
Score = 99.9 bits (247), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K E L IL+ + T++FV+T+ D + ++ T+
Sbjct 499 SKREKLVEILRNI----GDERTMVFVETKKKADFIATFLCQEK------------ISTTS 542
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ L F+ G +L+ATSVA G+DI VI ++ + + +
Sbjct 543 IHGDREQREREQALGDFRC-GKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRI 601
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R S + K+++D+ + W E +
Sbjct 602 GR-TGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEI 647
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/170 (25%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 263 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIVLA---GRDLMACAQTGSGKT 312
Query 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct 313 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 372
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T V QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 373 YGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIG-LKQVKYLVLDEA 421
>sp|Q6P4T2|U520_MOUSE U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
Length=2136
Score = 101 bits (250), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQ 299
Q +L A++ +N ++CAPTG GKT V+L+ + K K+++ A
Sbjct 485 QSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 544
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ ++ F K +G V ++G ++ ++ + II+ TP+ + K G
Sbjct 545 RSLVQEMVGSFGKRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGG 601
Query 359 TIPSLSIFTLMIFDECHNTSKQ-HPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L++ DE H P + + + + + ++IGL+A+
Sbjct 602 ERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDV-RLIGLSAT 654
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/211 (19%), Positives = 85/211 (40%), Gaps = 20/211 (9%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPR-----NYQLELALPAMK-GKNTIICAPTGCGK 270
P + L P S + ++ S ++ + Q ++ N + APTG GK
Sbjct 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1356
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERHGYRVTGISGATA 329
T + L Q +G+ V+ + EQ + + F +R +V ++G T+
Sbjct 1357 TICAEFAILRML---LQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1413
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI--FTLMIFDECHNTSK-QHPYNMI 386
++ +++ +III TP+ + L + ++ L + DE H P +
Sbjct 1414 TDL---KLLGKGNIIISTPEKW-DILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEV 1469
Query 387 MFNYLDQKLGGSSGPLP-QVIGLTASVGVGD 416
+ + + + S P +++ L++S+
Sbjct 1470 ICSRM--RYISSQIERPIRIVALSSSLSNAK 1498
>sp|F1LNJ2|U520_RAT U5 small nuclear ribonucleoprotein 200 kDa
helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1
Length=2139
Score = 101 bits (250), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK------GKVVFFANQ 299
Q +L A++ +N ++CAPTG GKT V+L+ + K K+++ A
Sbjct 485 QSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 544
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKKG 358
+ ++ F K +G V ++G ++ ++ + II+ TP+ + K G
Sbjct 545 RSLVQEMVGSFGKRLATYGITVAELTG---DHQLCKEEISATQIIVCTPEKWDIITRKGG 601
Query 359 TIPSLSIFTLMIFDECHNTSKQ-HPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L++ DE H P + + + + + ++IGL+A+
Sbjct 602 ERTYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDV-RLIGLSAT 654
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/211 (19%), Positives = 85/211 (40%), Gaps = 20/211 (9%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPR-----NYQLELALPAMK-GKNTIICAPTGCGK 270
P + L P S + ++ S ++ + Q ++ N + APTG GK
Sbjct 1300 PPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 1359
Query 271 TFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERHGYRVTGISGATA 329
T + L Q +G+ V+ + EQ + + F +R +V ++G T+
Sbjct 1360 TICAEFAILRML---LQNSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETS 1416
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI--FTLMIFDECHNTSK-QHPYNMI 386
++ +++ +III TP+ + L + ++ L + DE H P +
Sbjct 1417 TDL---KLLGKGNIIISTPEKW-DILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEV 1472
Query 387 MFNYLDQKLGGSSGPLP-QVIGLTASVGVGD 416
+ + + + S P +++ L++S+
Sbjct 1473 ICSRM--RYISSQIERPIRIVALSSSLSNAK 1501
>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP2 PE=3
SV=3
Length=554
Score = 99.1 bits (245), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/229 (18%), Positives = 78/229 (34%), Gaps = 31/229 (14%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A +D+ ++ +E + +
Sbjct 287 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQVTIGSLELAASHTITQ 346
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ L K + L L E + E ++F T+ D + +++ +
Sbjct 347 IVEVLSEF--------EKRDRLVKHL-ETATADKEAKVLIFSSTKRACDEITSYLRAD-- 395
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L FK +G I++AT VA GID+ + V
Sbjct 396 ----------GWPALAIHGDKQQNERDWVLREFK-TGKSPIMVATDVAARGIDVKGISYV 444
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
I Y+ GN + I GR G+ L T + + + +E
Sbjct 445 INYDMPGNIEDYVHRIGRTGRAGTTGTAVSLFTEANSKLGGDLCKIMRE 493
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 66/171 (39%), Gaps = 5/171 (3%)
Query 208 DIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPT 266
D++ + P + E P +++ KP Q + A+ G++ I A T
Sbjct 112 DMKCVGTDIPKPITSFDEAGFPDYVLNEVKQQGFPKPTAIQCQGWPMALSGRDMIGIAAT 171
Query 267 GCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
G GKT L H+ P G V+ A + Q + SK+ R T
Sbjct 172 GSGKTLSYCLPSIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQQECSKFGASSRIRNTC 231
Query 324 ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I G + + + +I I TP L++ L+ G +L T ++ DE
Sbjct 232 IYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGK-TNLRRVTYLVLDEA 281
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP1
PE=1 SV=2
Length=617
Score = 99.5 bits (246), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + + +T++FV+T+ + D L +++ I+ T + T
Sbjct 402 LLDLLSAEHKGLTLIFVETKRMADQLTDFL------------IMQNFKATAIHGDRTQAE 449
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRAR 734
++ L AFKA+ +IL+AT+VA G+DI VI Y+ + + I GR
Sbjct 450 RERALSAFKAN-VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNT 508
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G SN I K + + E
Sbjct 509 GVATSFFNSNNQNIVKGLMEILNE 532
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/184 (21%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSE---VSDTNLYSPFKPRNYQLELALPAMKGKNTIIC 263
+I + + + + S PP + + + L S KP Q KG++ + C
Sbjct 138 DNIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query 264 APTGCGKTFVSLLICEHHL-KKFPQGQKGKV------------VFFANQIPVYEQQKSVF 310
A TG GKT L L + P K + A + Q
Sbjct 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
K+ R R + G + ++ D+++ TP L + L++G + SL+ ++
Sbjct 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKV-SLANIKYLV 316
Query 371 FDEC 374
DE
Sbjct 317 LDEA 320
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP1 PE=3 SV=1
Length=617
Score = 99.5 bits (246), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + + +T++FV+T+ + D L +++ I+ T + T
Sbjct 402 LLDLLSAEHKGLTLIFVETKRMADQLTDFL------------IMQNFKATAIHGDRTQAE 449
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRAR 734
++ L AFKA+ +IL+AT+VA G+DI VI Y+ + + I GR
Sbjct 450 RERALSAFKAN-VADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNT 508
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G SN I K + + E
Sbjct 509 GVATSFFNSNNQNIVKGLMEILNE 532
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 67/184 (36%), Gaps = 17/184 (9%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSE---VSDTNLYSPFKPRNYQLELALPAMKGKNTIIC 263
DI + + + + S PP + + + L S KP Q KG++ + C
Sbjct 138 DDIPVDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMAC 197
Query 264 APTGCGKTFVSLLICEHHL-KKFPQGQKGKV------------VFFANQIPVYEQQKSVF 310
A TG GKT L L + P K + A + Q
Sbjct 198 AQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEA 257
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
K+ R R + G + ++ D+++ TP L + L++G + SL+ ++
Sbjct 258 RKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKV-SLANIKYLV 316
Query 371 FDEC 374
DE
Sbjct 317 LDEA 320
>sp|Q8Y7M8|DBPA_LISMO ATP-dependent RNA helicase DbpA OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
OX=169963 GN=dbpA PE=2 SV=1
Length=470
Score = 98.3 bits (243), Expect = 4e-20, Method: Composition-based stats.
Identities = 66/362 (18%), Positives = 127/362 (35%), Gaps = 37/362 (10%)
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
+ TE K ++ + F QK E ++ D E+ +
Sbjct 81 MQVKTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVD 140
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE-QDLTQRFEEKLQE 596
+ L + ++ L + +++D L L N+ + E QDL +R+++
Sbjct 141 KVAHLV-LDEVDEMLSMGFIDQVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDNPMV 199
Query 597 LESVSR--DPSNE-NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
+E S +P + ++ L++ I+F T+ VD L + ++
Sbjct 200 IEMASEKTNPIFHVEMQTDNKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLDVK--- 256
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+ + G+ + +D FK SG LIAT VA GID+ +LVI
Sbjct 257 ------------ASKIHGGLRQEDRFRAMDDFK-SGKSRFLIATDVAGRGIDVDNVSLVI 303
Query 714 LYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
Y+ N + I GR G + +N + ++ M +
Sbjct 304 NYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTI---------- 353
Query 771 WDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECH 830
E + ++ ++ +E R Q+K +P K + L + L + I
Sbjct 354 --EKKRKPTVIEVKVNEDAFRKKQQK-RPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVD 410
Query 831 YT 832
+
Sbjct 411 FV 412
Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + A+ G++ + + TG GKT + ++ + K + + + Q
Sbjct 26 QKAVIPVALTGEDIVAKSQTGSGKTAAFAIPIAEQVEW--EENKPQALIIVPTRELAMQV 83
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ + + I G + ++ + N I++ TP L+++++KG++ +
Sbjct 84 KTECTNIGRFKRVKAAAIYGQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLN-VDKV 142
Query 367 TLMIFDEC 374
++ DE
Sbjct 143 AHLVLDEV 150
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
1980 / Ss-1) OX=665079 GN=prp5 PE=3 SV=1
Length=1114
Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 69/184 (38%), Gaps = 16/184 (9%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L E Y+ + + T++FV + D L + G
Sbjct 712 EEKEKFHRLLELLGELYNADEDARTLIFVDRQEKADDLLKDLMRK------------GYP 759
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + G + +D FKA G I+IATSVA G+D+ Q LV+ ++ ++ +
Sbjct 760 CMSIHGGKDQVDRDSTIDDFKA-GVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYV 818
Query 726 QTRGRGRARG--SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
GR G + I E+ + RL ++ +++K+
Sbjct 819 HRAGRTGRAGNTGTAVTFITEEQEQYSVGIAKALEQSGQEVPERLNEMRKS-YKDKVKSG 877
Query 784 QTHE 787
E
Sbjct 878 AKKE 881
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/318 (17%), Positives = 112/318 (35%), Gaps = 28/318 (9%)
Query 193 KDVETEDLED------KMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRN 245
+ E D+ + ++E I++ ++ P+ + D + KP +
Sbjct 449 EPAELVDMTEAEINDLRLELDGIKVAGKDVPKPVQKWSQCGLDVKSLDVIKKLGYDKPTS 508
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFANQIPV 302
Q++ M G++ I A TG GKT LL H++ + G + + +
Sbjct 509 IQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLKNSDGPIGLIMTPTREL 568
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q + + G R G + + +II+ TP ++ L G +
Sbjct 569 ATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGAEIIVCTPGRMIELLAANSGRV 628
Query 361 PSLSIFTLMIFDECHNT--SKQHPYNMIMFNYL----DQKLGGSSGPLPQVIGLTASVGV 414
+L T ++ DE P +M + +++ S +P+++
Sbjct 629 TNLQRVTYVVLDEADRMFDMGFEP--QVMKVFNNIRPNRQTILFSATMPRIM-------D 679
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
AK T ++ I S+ A I + EE E+ ++ + ++ + D I
Sbjct 680 ALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKEKF-HRLLELLGELYNADEDARTLI 738
Query 475 IAQLMRDTESLAKRICKD 492
+ L K + +
Sbjct 739 FVDRQEKADDLLKDLMRK 756
>sp|P0CQ70|IF4A_CRYNJ ATP-dependent RNA helicase eIF4A OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=TIF1 PE=3 SV=1
Length=401
Score = 97.2 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/210 (22%), Positives = 77/210 (37%), Gaps = 26/210 (12%)
Query 518 KACMVFQMPDKDEESRICKALFLYTS-HLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
+A M+F + + DE +Y L +++ + LD K F
Sbjct 169 EAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFM----- 223
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
+ + L ++ E L+ + + E KLE LC + Y T ++F T
Sbjct 224 ---RDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLC----DLYETVTITQAVIFCST 276
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
R VD W+ + G M ++ I+ F+ SG +LI
Sbjct 277 RRKVD----WLTQQLHDRQFTVSAMHG--------DMKQEEREVIMKEFR-SGSSRVLIT 323
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
T + GID+ Q +LVI Y+ + I
Sbjct 324 TDLLARGIDVQQVSLVINYDLPSSKENYIH 353
Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 7/141 (5%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y +P Q +P + G++ I A +G GKT + + +K + +
Sbjct 44 YAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDT--TVKKTQALV 101
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G TA + ++ E I++ TP + + +
Sbjct 102 LAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMI 161
Query 356 KKGTIP--SLSIFTLMIFDEC 374
+G + ++ +F L DE
Sbjct 162 NRGALKTEAVMMFCL---DEA 179
>sp|P0CQ71|IF4A_CRYNB ATP-dependent RNA helicase eIF4A OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=TIF1 PE=3 SV=1
Length=401
Score = 97.2 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/210 (22%), Positives = 77/210 (37%), Gaps = 26/210 (12%)
Query 518 KACMVFQMPDKDEESRICKALFLYTS-HLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
+A M+F + + DE +Y L +++ + LD K F
Sbjct 169 EAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFM----- 223
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
+ + L ++ E L+ + + E KLE LC + Y T ++F T
Sbjct 224 ---RDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLC----DLYETVTITQAVIFCST 276
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
R VD W+ + G M ++ I+ F+ SG +LI
Sbjct 277 RRKVD----WLTQQLHDRQFTVSAMHG--------DMKQEEREVIMKEFR-SGSSRVLIT 323
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
T + GID+ Q +LVI Y+ + I
Sbjct 324 TDLLARGIDVQQVSLVINYDLPSSKENYIH 353
Score = 49.8 bits (117), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 7/141 (5%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y +P Q +P + G++ I A +G GKT + + +K + +
Sbjct 44 YAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDT--TVKKTQALV 101
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G TA + ++ E I++ TP + + +
Sbjct 102 LAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMI 161
Query 356 KKGTIP--SLSIFTLMIFDEC 374
+G + ++ +F L DE
Sbjct 162 NRGALKTEAVMMFCL---DEA 179
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis
elegans OX=6239 GN=glh-2 PE=1 SV=1
Length=974
Score = 99.9 bits (247), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/178 (22%), Positives = 68/178 (38%), Gaps = 28/178 (16%)
Query 606 NENPKLEDLCFIL---QEEYHLNPET-----ITILFVKTRALVDALKNWIEGNPKLSFLK 657
+ + K + L IL + Y + TI+FV RA+ D L + +
Sbjct 788 DRSEKKDKLLEILGIDIDSYTTEKNSEVYTKKTIVFVSQRAMADTLASILSS-------- 839
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
+ + L F+ +G +LIAT+VA+ G+DI + VI Y+
Sbjct 840 ----AQVPAITIHGAREQRERSEALRQFR-NGSKPVLIATAVAERGLDIKGVDHVINYDM 894
Query 718 VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQTWDE 773
N+ I GR G+ A E N+ E ++++D+ + W +
Sbjct 895 PDNIDDYIHRIGRTGRVGN-----AGRATSFISEDCNLLSELVRVLSDADQLVPEWMQ 947
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/217 (19%), Positives = 78/217 (36%), Gaps = 17/217 (8%)
Query 168 PKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSC 227
PK + +E + + + +G+ + D E K+ + + + C+ SE +
Sbjct 503 PKATYVPVEDNMEEVFNMQKISEGLMFNKFFDAEVKITSDKKPVGVKT---CKTFSEANL 559
Query 228 PPSEVSD--TNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
+ + Y+ P + Y L L +G + + CA TG GKT LL L
Sbjct 560 GETMKKNVAHAGYTKTTPIQQYTLPLIH---QGHDIMACAQTGSGKTAAFLLPIMARLID 616
Query 285 FPQGQKG-------KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
+ + + +Q + K+ + + + G A QI
Sbjct 617 ENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQI 676
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ II+ T + + ++GTI L + DE
Sbjct 677 EKGATIIVGTVGRIKHFCEEGTI-KLDKCRFFVLDEA 712
>sp|Q756G5|DBP8_EREGS ATP-dependent RNA helicase DBP8 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP8 PE=3 SV=1
Length=435
Score = 97.5 bits (241), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/187 (22%), Positives = 71/187 (38%), Gaps = 25/187 (13%)
Query 587 TQRFEEKLQELESVSRDPS--------NENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
F ++ L+ ++ S E+ K L +L E + + I+FV
Sbjct 212 PPLFSFHVENLDDLAVPASLQTTYLLVPEHVKEAYLYQVLSSEEYKSKS--AIVFVNRTI 269
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ L+ + ++ T+ ++ M + L F+A+ +LIAT
Sbjct 270 SAEILRRMLMQLE----IRV--------TSLHSQMPQRERTNSLQRFRAN-AARVLIATD 316
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMY 756
VA G+DI LV+ Y+ N I GR RA RG + + V + I
Sbjct 317 VASRGLDIPAVQLVVNYDIPANPDTYIHRAGRTARAGRGGEALSFIAPKDVSRIQAIEER 376
Query 757 KEKMMND 763
K M++
Sbjct 377 IGKKMDE 383
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 40/125 (32%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ G++ I A TG GKT P G G + + Q F+
Sbjct 39 EILAGRDCIGGAKTGSGKTIAFAAPMLTKWSADPCGMFG--IVLTPTRELAMQIAEQFTA 96
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
RV + G ++ II TP L +++ TI L +
Sbjct 97 LGSVMNIRVALVVGGEDIVSQALELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYL 156
Query 370 IFDEC 374
+ DE
Sbjct 157 VLDEA 161
>sp|Q3MSQ8|DDX4_PELLE Probable ATP-dependent RNA helicase DDX4
OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Length=724
Score = 99.1 bits (245), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/171 (22%), Positives = 74/171 (43%), Gaps = 18/171 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+E K + L ILQE T++FVKT+ D + ++
Sbjct 521 DEFGKKDKLMEILQEI----GSERTMVFVKTKKKADFIATFLCQEK------------VP 564
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
T+ + ++ L F+ +G +++ATSVA G+DI + VI ++ ++ + +
Sbjct 565 STSIHGDREQKERETALRDFR-TGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYV 623
Query 726 QTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR GR + + + ++++I K+++D+ + W E V
Sbjct 624 HRIGRTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEV 674
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/125 (26%), Positives = 52/125 (42%), Gaps = 8/125 (6%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSV 309
G++ + CA TG GKT LL HL F ++ + + A + Q
Sbjct 323 GRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLD 382
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
K+ R I G T ++QI E +I+ TP L++ ++K I L+ +
Sbjct 383 ARKFSYGTCVRPVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIG-LTKLRYL 441
Query 370 IFDEC 374
+ DE
Sbjct 442 VLDEA 446
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP5 PE=3
SV=2
Length=1207
Score = 99.9 bits (247), Expect = 6e-20, Method: Composition-based stats.
Identities = 64/311 (21%), Positives = 115/311 (37%), Gaps = 41/311 (13%)
Query 438 VIATVKHNLEELEQVVYKPQKFF------RKVESRISDKFKYIIAQLMRDTESLAKRICK 491
+I T EL ++K K F R V + + IA+L R E + +
Sbjct 654 LIMTPT---RELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGAEIIVCTPGR 710
Query 492 DLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
++ L+ Q R ++ V + +A +F M + + +I + +
Sbjct 711 MIDLLAANQGRVTNLKRVT--YVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFSATM 768
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
I + K + ++ R+ EIEQ + R +E K
Sbjct 769 PRIIDSLTKKVLKNPIEVTV-GGRSVVAKEIEQIVEVR----------------DEPSKF 811
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ +L E Y + + T++FV+ + D L + ++ G + +
Sbjct 812 HRVLELLGELYDRDEDARTLIFVERQEKADDLLKEL------------MMKGYPCMSIHG 859
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
G + + FK G ILIATSVA G+D+ Q LVI Y+ ++ + GR
Sbjct 860 GKDQIDRDSTISDFK-KGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRT 918
Query 732 RARGSKCFLLT 742
G+ +T
Sbjct 919 GRAGNTGVAVT 929
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 53/307 (17%), Positives = 109/307 (36%), Gaps = 22/307 (7%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALP 253
E E + ++E I++ ++ P+ + D ++ P Q++
Sbjct 551 TEAEVADLRLELDGIKVNGKDVPKPVQKWAQCGLTRQTLDVVDNLGYEKPTPIQMQALPA 610
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKV-VFFANQIPVYEQQKSVF 310
M G++ I A TG GKT LL H+K P + G + + + Q
Sbjct 611 LMSGRDVIGVAKTGSGKTVAFLLPMFRHIKDQPPLKDTDGPIGLIMTPTRELAVQIHKDC 670
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTL 368
+ + G R G + ++ +II+ TP +++ L +G + +L T
Sbjct 671 KPFLKMMGLRAVCAYGGAPIREQIAELKRGAEIIVCTPGRMIDLLAANQGRVTNLKRVTY 730
Query 369 MIFDECHNT--SKQHPYNMIMFNYL----DQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
++ DE P +M + D++ S +P++I K +
Sbjct 731 VVLDEADRMFDMGFEP--QVMKIFANMRPDRQTILFSATMPRII-------DSLTKKVLK 781
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ S+ A I + +E + ++ + ++ R D I +
Sbjct 782 NPIEVTVGGRSVVAKEIEQIVEVRDEPSKF-HRVLELLGELYDRDEDARTLIFVERQEKA 840
Query 483 ESLAKRI 489
+ L K +
Sbjct 841 DDLLKEL 847
>sp|Q6YS30|RH5_ORYSJ DEAD-box ATP-dependent RNA helicase 5 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0301200 PE=2 SV=1
Length=512
Score = 97.9 bits (242), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/144 (21%), Positives = 52/144 (36%), Gaps = 16/144 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L ++YH ++FV + ++ ++ G + +
Sbjct 333 LLDKYHKAQRNRVLVFVLYKREATRVETMLQRR------------GWSAVSVHGDKAQHD 380
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRAR 734
+ L FK G ++IAT VA G+DI +VI Y Y + I GR +
Sbjct 381 RTKALSLFK-EGSCPLMIATDVASRGLDIPDVEVVINYSYPLTTEDYVHRIGRTGRAGKK 439
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G T + E +N+ +E
Sbjct 440 GVAHTFFTQENKGLAGELVNVLRE 463
Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 53/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSV 309
+ G++ I A TG GKT + H+++ + K V+ + + +Q V
Sbjct 127 LDGRDFIGIAATGSGKTIAFGVPALMHVRRKMGEKSAKKGVPRVLVLSPTRELAQQIADV 186
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G T++ + + DI+I TP + + ++ G I L+ + +
Sbjct 187 LCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLIEMG-ICRLNDVSFV 245
Query 370 IFDEC 374
+ DE
Sbjct 246 VLDEA 250
>sp|Q54QS3|DDX3_DICDI Probable ATP-dependent RNA helicase ddx3
OS=Dictyostelium discoideum OX=44689 GN=ddx3 PE=3 SV=1
Length=712
Score = 99.1 bits (245), Expect = 7e-20, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 56/145 (39%), Gaps = 16/145 (11%)
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
++L L + + ++FV+T+ D L ++ T + +T
Sbjct 493 YLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQR------------NFPTTCIHGDLTQ 540
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGR 732
P ++ L +F+ S L+AT +A G+ I NLVI ++ + + I GR
Sbjct 541 PERENALQSFR-SFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAG 599
Query 733 ARGSKCFLLTSNAGVIEKEQINMYK 757
+G + E + + K
Sbjct 600 KKGLAISFFNEKNKPVGAELLKLMK 624
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/228 (19%), Positives = 85/228 (37%), Gaps = 22/228 (10%)
Query 163 DKENWPKTLKLALEKERNKFSELWIVEK---GIKDVETEDLEDKMETSDIQIFYQEDPEC 219
D N P+ + ++ E +K E++ GI +D + +ETS+
Sbjct 192 DSRNHPEMKREFIDLEEHKAEEIFKKNDDNIGIDFNAYDDDDISIETSEHIC-----APL 246
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF------V 273
+ ++ + + KP Q +K ++ + CA TG GKT +
Sbjct 247 NSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFPII 306
Query 274 SLLICEHHLKKFPQGQKG-------KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
S ++ + + P + G + + A + +Q +K+ I G
Sbjct 307 SGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYG 366
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ DI++ T LV+ L +G + SLS ++ DE
Sbjct 367 GAEVFHQINELDRGCDILVATTGRLVDLLMRGRV-SLSKIKYLVLDEA 413
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorhabditis
elegans OX=6239 GN=glh-1 PE=1 SV=3
Length=763
Score = 99.1 bits (245), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 19/138 (14%)
Query 605 SNENPKLEDLCFILQEEYHLNPET-----ITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
S + KL +L I + Y T++FV RA+ D L + +
Sbjct 579 SEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSS---------- 628
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ + L F+ +G +LIAT+VA+ G+DI + VI Y+
Sbjct 629 --AQVPAITIHGAREQRERSEALRQFR-NGSKPVLIATAVAERGLDIKGVDHVINYDMPD 685
Query 720 NVIKMIQTRGR-GRARGS 736
N+ I GR GR S
Sbjct 686 NIDDYIHRIGRTGRVGNS 703
Score = 59.8 bits (143), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 17/217 (8%)
Query 168 PKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSC 227
PK + +E + + +G+ + D E K+ +S+ + + C+ +E +
Sbjct 292 PKATYVPVEDNMEDVFNMQKISEGLMFNKFFDAEVKLTSSEKTVGIK---PCKTFAEANL 348
Query 228 PPSEVSD--TNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
+ + YS P + Y L L +G + + CA TG GKT LL L
Sbjct 349 TETMQKNVAHAGYSKTTPIQQYALPLVH---QGYDIMACAQTGSGKTAAFLLPIMTRLID 405
Query 285 FPQGQKG-------KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
+ + + +Q + K+ + + + G A QI
Sbjct 406 DNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLAVGYNKGQI 465
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ II+ T + + ++GTI L + DE
Sbjct 466 EKGATIIVGTVGRIKHFCEEGTI-KLDKCRFFVLDEA 501
>sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os12g0611200 PE=2 SV=1
Length=628
Score = 98.3 bits (243), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/159 (25%), Positives = 62/159 (39%), Gaps = 20/159 (13%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
DL ++KL E S+ S + K L +++E I+F +T+ D L
Sbjct 303 DLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEH---AKGGKCIVFTQTKRDADRLS 359
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ + L G +T ++ L F+ G NILIAT VA G+
Sbjct 360 YTMG-----RSFQCQALHG--------DITQAQRERTLKGFR-EGHFNILIATDVAARGL 405
Query 705 DIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFL 740
DI +LVI +E + + GR +G +
Sbjct 406 DIPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVM 444
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLL-ICEHHLKKFPQGQKGKVVFFANQIPV 302
Q + PAM+GK+ + A TG GKT + +L H +K G+ + A +
Sbjct 125 QRAVLEPAMQGKDMVGRAKTGTGKTLAFGIPILDAIIRHNEKNSPGKFPLAIVLAPTREL 184
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
+Q + FS + + G T + + Q+ D++I TP +++ LK+G +
Sbjct 185 AKQVEREFS---DSSNVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKRGALN- 240
Query 363 LSIFTLMIFDEC 374
LS ++ DE
Sbjct 241 LSEVRFVVLDEA 252
>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631
GN=PRP5 PE=3 SV=1
Length=1156
Score = 99.1 bits (245), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/154 (25%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L IL E Y+ + T++FV + D L + ++ G +T
Sbjct 707 EDTKFHRLLEILGELYNREKDARTLIFVDRQEAADDLLKDL--------IRKGYVT---- 754
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ + G + + FKA G+ I+ ATSVA G+D+ Q LVI Y+ ++ +
Sbjct 755 MSLHGGKDQVDRDETISDFKA-GNVPIVTATSVAARGLDVKQLKLVINYDVPNHMEDYVH 813
Query 727 ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR +G+ +T ++ I K
Sbjct 814 RAGRTGRAGQKGTCITFITPEQDRYARDIIAALK 847
Score = 76.4 bits (186), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/194 (19%), Positives = 73/194 (38%), Gaps = 12/194 (6%)
Query 193 KDVETEDLED------KMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRN 245
E +D+ + ++E I + ++ P+ + P+ D + P
Sbjct 442 PPAEIQDMSEELANQIRLEMDAITVRGRDCPKPLTKWSHCGLPASCLDVIKRLGYSAPTP 501
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV---VFFANQIPV 302
Q + M G++ I A TG GKT LL H+K + + + +
Sbjct 502 IQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTREL 561
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q + + G R + G + + ++ + DI++ TP L++ L G +
Sbjct 562 AVQIYREMRPFIKALGLRAACVYGGAPISEQIAEMKKTADIVVATPGRLIDLLTANSGRV 621
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 622 TNLYRVTYLVLDEA 635
>sp|Q4R8K5|IF4A1_MACFA Eukaryotic initiation factor 4A-I OS=Macaca
fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1
Length=406
Score = 96.4 bits (238), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + + M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKMHAR------------DFTASAMHGDMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 9/187 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +D + +E + + + NLSE S + Y KP Q
Sbjct 6 DSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSE-----SLLRGIYAYGFEKPSAIQQ 60
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + ++ + + + A + +Q +
Sbjct 61 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQK 118
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + G G T V+++ +E II+ TP + + L + +
Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY-IK 177
Query 368 LMIFDEC 374
+ + DE
Sbjct 178 MFVLDEA 184
>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus
gallus OX=9031 GN=EIF4A2 PE=2 SV=1
Length=407
Score = 96.4 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/154 (25%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V E + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLEIDL--KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|Q4R4Y9|IF4A2_MACFA Eukaryotic initiation factor 4A-II OS=Macaca
fascicularis OX=9541 GN=EIF4A2 PE=2 SV=1
Length=408
Score = 96.4 bits (238), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 224 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 279
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 280 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 326
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 327 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 360
Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 35 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 94
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 95 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 152
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 153 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 186
>sp|P29562|IF4A1_RABIT Eukaryotic initiation factor 4A-I (Fragment)
OS=Oryctolagus cuniculus OX=9986 GN=EIF4A1 PE=1 SV=2
Length=398
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 214 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 270 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 317 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 350
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/140 (21%), Positives = 53/140 (38%), Gaps = 4/140 (3%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q LP +KG + I A +G GKT + ++ + + +
Sbjct 40 YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALV 97
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNN 354
A + +Q + V + G G T V+++ +E II+ TP + +
Sbjct 98 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM 157
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + + + + DE
Sbjct 158 LNRRYLSPKY-IKMFVLDEA 176
>sp|Q5RKI1|IF4A2_RAT Eukaryotic initiation factor 4A-II OS=Rattus
norvegicus OX=10116 GN=Eif4a2 PE=1 SV=1
Length=407
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|Q5R4X1|IF4A2_PONAB Eukaryotic initiation factor 4A-II OS=Pongo
abelii OX=9601 GN=EIF4A2 PE=2 SV=1
Length=407
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|P10630|IF4A2_MOUSE Eukaryotic initiation factor 4A-II OS=Mus
musculus OX=10090 GN=Eif4a2 PE=1 SV=2
Length=407
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|Q14240|IF4A2_HUMAN Eukaryotic initiation factor 4A-II OS=Homo
sapiens OX=9606 GN=EIF4A2 PE=1 SV=2
Length=407
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|Q3SZ65|IF4A2_BOVIN Eukaryotic initiation factor 4A-II OS=Bos
taurus OX=9913 GN=EIF4A2 PE=2 SV=1
Length=407
Score = 96.0 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ + E KL+ LC + Y T ++
Sbjct 223 EVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLC----DLYETLTITQAVI 278
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + L G M + I+ F+ SG
Sbjct 279 FLNTRRKVDWLTEKM----HARDFTVSALHG--------DMDQKERDVIMREFR-SGSSR 325
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 359
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
N + + S + Y KP Q +P +KG + I A +G GKT +
Sbjct 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVE 339
L+ + ++ + + A + +Q + V + G I G N + E
Sbjct 94 QLE--IEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP + + L + + + + DE
Sbjct 152 APHIVVGTPGRVFDMLNRRYLSPK-WIKMFVLDEA 185
>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0143700 PE=2
SV=2
Length=602
Score = 97.5 bits (241), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 66/170 (39%), Gaps = 24/170 (14%)
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
D I DL ++KL E S+ S K L +++E I+F +T+
Sbjct 284 DPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEH---ANGGKCIVFTQTKRE 340
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQ--NTGMTLPAQKCILDAFKASGDHNILIAT 697
D L GR Q + ++ ++ L F+ G NIL+AT
Sbjct 341 ADRLA---------------YAMGRSYACQALHGDISQNQRERTLSGFR-DGRFNILVAT 384
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSN 744
VA G+DI +LVI YE + G R +GS + T++
Sbjct 385 DVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTND 434
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLL-ICEHHLKKFPQGQKGKVVFFANQIPV 302
Q + PAM+GK+ I A TG GKT + ++ H +K G+ + A +
Sbjct 111 QRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTREL 170
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + F + V G + + + D+++ TP +++ L++G +
Sbjct 171 ARQVEKEFKESAPLDSLCVY---GGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLN- 226
Query 363 LSIFTLMIFDEC 374
LS ++ DE
Sbjct 227 LSEIQFVVLDEA 238
>sp|Q55804|CRHR_SYNY3 RNA helicase CrhR OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) OX=1111708 GN=crhR PE=1 SV=1
Length=492
Score = 96.8 bits (239), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/371 (15%), Positives = 124/371 (33%), Gaps = 47/371 (13%)
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ +D L A + + E ++ ++ + F V I +
Sbjct 64 PLMDRIDPEGDLQALILTPTRELAQQVAEAMKDFSHERRLFILNVYG------GQSIERQ 117
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+R E + + + + +R+ + QW+V + +A + M D+ I +
Sbjct 118 IRSLERGVQIVVGTPGRVIDLIDRKKLKLETIQWVV-LDEADEMLSMGFIDDVKTILRKT 176
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
A M + L + F N A + Q R E++L +
Sbjct 177 PPTRQ---------TACFSATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVP 227
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
P LE +PE+ I+FV+T+ L + ++
Sbjct 228 RGWSKAKALQPILE----------MEDPES-AIIFVRTKQTAADLTSRLQE--------- 267
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + ++ ++ ++ F+ G +++AT +A G+D+ + V+ ++
Sbjct 268 ---AGHSVDEYHGNLSQSQRERLVHRFR-DGKIKLVVATDIAARGLDVNNLSHVVNFDLP 323
Query 719 GN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
N I I GR G L+ I++ + + ++ + V
Sbjct 324 DNAETYIHRIGRTGRAGKTGKAIALV----EPIDRRLLRSIENRLKQQIEVCTIPNRSQV 379
Query 776 FREKILHIQTH 786
++I +Q
Sbjct 380 EAKRIEKLQEQ 390
Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/128 (15%), Positives = 46/128 (36%), Gaps = 4/128 (3%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E + G++ + + TG GKT L + P+G + + + +Q
Sbjct 34 QTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDRID--PEGDL-QALILTPTRELAQQV 90
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ + + G + + + I++ TP +++ + + + L
Sbjct 91 AEAMKDFSHERRLFILNVYGGQSIERQIRSLERGVQIVVGTPGRVIDLIDRKKL-KLETI 149
Query 367 TLMIFDEC 374
++ DE
Sbjct 150 QWVVLDEA 157
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612
GN=prp5 PE=3 SV=1
Length=1192
Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/159 (24%), Positives = 62/159 (39%), Gaps = 18/159 (11%)
Query 606 NENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
NE+ K L IL Y N + +++FV+ + DAL + G
Sbjct 786 NEDTKFVRLLEILGNLYSDDANEDARSLIFVERQEAADALLRELMRK------------G 833
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 834 YPCMSIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLED 892
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + K+
Sbjct 893 YVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALKQS 931
Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 49/133 (37%), Gaps = 5/133 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKV-VFFANQIPVY 303
Q + M G++ I A TG GKT L+ H+K +G + + +
Sbjct 584 QSQAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLDNMEGPIGLIMTPTRELA 643
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIP 361
Q + + R G + + +I++ TP +++ L G +
Sbjct 644 TQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDLLAANAGRVT 703
Query 362 SLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 704 NLRRVTYVVLDEA 716
>sp|P60843|IF4A1_MOUSE Eukaryotic initiation factor 4A-I OS=Mus
musculus OX=10090 GN=Eif4a1 PE=1 SV=1
Length=406
Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 9/187 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +D + +E + + + NLSE S + Y KP Q
Sbjct 6 DSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSE-----SLLRGIYAYGFEKPSAIQQ 60
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + ++ + + + A + +Q +
Sbjct 61 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQK 118
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + G G T V+++ +E II+ TP + + L + +
Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY-IK 177
Query 368 LMIFDEC 374
+ + DE
Sbjct 178 MFVLDEA 184
>sp|P60842|IF4A1_HUMAN Eukaryotic initiation factor 4A-I OS=Homo
sapiens OX=9606 GN=EIF4A1 PE=1 SV=1
Length=406
Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 9/187 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +D + +E + + + NLSE S + Y KP Q
Sbjct 6 DSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSE-----SLLRGIYAYGFEKPSAIQQ 60
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + ++ + + + A + +Q +
Sbjct 61 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQK 118
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + G G T V+++ +E II+ TP + + L + +
Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY-IK 177
Query 368 LMIFDEC 374
+ + DE
Sbjct 178 MFVLDEA 184
>sp|Q3SZ54|IF4A1_BOVIN Eukaryotic initiation factor 4A-I OS=Bos
taurus OX=9913 GN=EIF4A1 PE=2 SV=1
Length=406
Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 9/187 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +D + +E + + + NLSE S + Y KP Q
Sbjct 6 DSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSE-----SLLRGIYAYGFEKPSAIQQ 60
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + ++ + + + A + +Q +
Sbjct 61 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQK 118
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + G G T V+++ +E II+ TP + + L + +
Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY-IK 177
Query 368 LMIFDEC 374
+ + DE
Sbjct 178 MFVLDEA 184
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex
subunit 3-like OS=Dictyostelium discoideum OX=44689 GN=ascc3l
PE=3 SV=1
Length=2237
Score = 98.7 bits (244), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/176 (24%), Positives = 77/176 (44%), Gaps = 16/176 (9%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-------KVVFFAN 298
Q +L A K N ++ APT GKT V++L H + K G K+V+ A
Sbjct 556 QSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAP 615
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKK 357
+ ++ FSK + +G V ++G + + + II+ TP+ + K
Sbjct 616 MKSLVQEMVGNFSKRLKSYGIVVNELTG---DQSLTNKQISETQIIVTTPEKWDIITRKS 672
Query 358 GTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
G + L+I DE H + + I+ L ++ S+ + +++GL+A+
Sbjct 673 GDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTL--RMIESTQQMVRLVGLSAT 726
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 21/224 (9%)
Query 208 DIQIFYQED------PECQNLSE-NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKG--- 257
+ I +Q P C+ L + P + D S FKP +
Sbjct 1351 SLPISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMY 1410
Query 258 ---KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
N I APT GKT + + ++ F Q K KVV+ A + + +S F
Sbjct 1411 QSNDNAFISAPTNSGKTVCAEIAL---IRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKF 1467
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS--LSIFTLMIFD 372
+S T + V +I++ ++II+ + + L + L L+I D
Sbjct 1468 GVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKW-DILSRKWKQRKALQSINLLIVD 1526
Query 373 ECHNTSKQH-PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
E H ++ P I+ + + + + +G +VI L++S+
Sbjct 1527 ELHLIGGEYGPTMEIVVSRM-RYISTQTGNALRVIALSSSIANA 1569
>sp|A5A6N4|IF4A1_PANTR Eukaryotic initiation factor 4A-I OS=Pan
troglodytes OX=9598 GN=EIF4A1 PE=2 SV=1
Length=406
Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 55.9 bits (133), Expect = 8e-07, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 9/187 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ +D + +E + + + NLSE S + Y KP Q
Sbjct 6 DSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSE-----SLLRGIYAYGFEKPSAIQQ 60
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + ++ + + + A + +Q +
Sbjct 61 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAPTRELAQQIQK 118
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + G G T V+++ +E II+ TP + + L + +
Sbjct 119 VVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY-IK 177
Query 368 LMIFDEC 374
+ + DE
Sbjct 178 MFVLDEA 184
>sp|Q5R5F5|IF4A1_PONAB Eukaryotic initiation factor 4A-I OS=Pongo
abelii OX=9601 GN=EIF4A1 PE=2 SV=1
Length=406
Score = 95.6 bits (236), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ + + E KL+ LC + Y T ++
Sbjct 222 EVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLC----DLYETLTITQAVI 277
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ TR VD L + + G M + I+ F+ SG
Sbjct 278 FINTRRKVDWLTEKM----HARDFTVSAMHG--------DMDQKERDVIMREFR-SGSSR 324
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 358
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 4/155 (3%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+L + + S + Y KP Q L +KG + I A +G GKT +
Sbjct 33 SLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQ 92
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VE 339
++ + + + A + +Q + V + G G T V+++ +E
Sbjct 93 QIELDL--KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 150
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
II+ TP + + L + + + + DE
Sbjct 151 APHIIVGTPGRVFDMLNRRYLSPKY-IKMFVLDEA 184
>sp|Q9C551|RH5_ARATH DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis
thaliana OX=3702 GN=RH5 PE=1 SV=1
Length=537
Score = 96.8 bits (239), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/144 (21%), Positives = 55/144 (38%), Gaps = 16/144 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E+YH + + ++F + + L+ +++ G + +
Sbjct 357 LLEKYHKSQKNRVLVFALYKVEAERLERFLQQR------------GWKAVSIHGNKAQSE 404
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRAR 734
+ L FK G +L+AT VA G+DI +VI Y + + I GR +
Sbjct 405 RTRSLSLFK-EGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKK 463
Query 735 GSKCFLLTSNAGVIEKEQINMYKE 758
G T + E +N+ +E
Sbjct 464 GVAHTFFTPLNKGLAGELVNVLRE 487
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/127 (24%), Positives = 52/127 (41%), Gaps = 8/127 (6%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGK------VVFFANQIPVYEQQK 307
+ G++ I A TG GKT + H LKK + G + + + Q
Sbjct 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V + E G + + G +++ + I DI+I TP L +L + + LS +
Sbjct 209 DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRL-RDLIESNVLRLSDVS 267
Query 368 LMIFDEC 374
++ DE
Sbjct 268 FVVLDEA 274
>sp|O73946|HELS_PYRFU ATP-dependent DNA helicase Hel308 OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /
Vc1) OX=186497 GN=hel308 PE=1 SV=1
Length=720
Score = 97.2 bits (240), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 20/171 (12%)
Query 247 QLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E ++GKN +I PT GKT ++ + H + Q GK V+ + E+
Sbjct 28 QAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI----LTQGGKAVYIVPLKALAEE 83
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F + +E+ G RV +G ++ + DIII T + + L+ G+ +
Sbjct 84 KFQEF-QDWEKIGLRVAMATGDYDSK---DEWLGKYDIIIATAEKFDSLLRHGS-SWIKD 138
Query 366 FTLMIFDECHN--TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
+++ DE H + + ++ ++ K Q+IGL+A++G
Sbjct 139 VKILVADEIHLIGSRDRGATLEVILAHMLGK--------AQIIGLSATIGN 181
Score = 35.9 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 51/161 (32%), Gaps = 38/161 (24%)
Query 630 TILFVKTRALVD-----------------------ALKNWIEGNPKLSFLKPGILTGRGK 666
++FV R + L + +E NP L I G
Sbjct 240 ALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGV-- 297
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL-------YEYVG 719
+ G+ + + + F+ G ++AT GI+ ++I +
Sbjct 298 AFHHAGLGRDERVLVEENFR-KGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMER 356
Query 720 NVI----KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
I +M+ GR + ++ S + +E +N Y
Sbjct 357 IPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD-DPREVMNHY 396
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus
gallus OX=9031 GN=DDX42 PE=2 SV=1
Length=944
Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/237 (21%), Positives = 80/237 (34%), Gaps = 33/237 (14%)
Query 529 DEESRICKALFLY-----TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
DE R+ F Y SH+R L+ S R K ++ ++ ++
Sbjct 407 DEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK-----IEKLARDILIDPIRVVQ 461
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
D+ + E+ Q +E PS N L +LFV +A + L
Sbjct 462 GDIGEANEDVTQIVEIFPSGPSKWNWLTRRLVEF-------TSSGSVLLFVTKKANAEEL 514
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
N ++ + M + ++ FK G IL+AT VA G
Sbjct 515 ANNLKQE------------DHNLGLLHGDMDQSERNKVISEFKKKG-IPILVATDVAARG 561
Query 704 IDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI VI Y+ ++ I GR +G LLT + + +
Sbjct 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/136 (23%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
+P Q + AM G++ I A TG GKT + H+ + + G V
Sbjct 275 QPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q S ++ + + R + G + + + E +I++ TP L++++KK
Sbjct 335 TRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 394
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++FDE
Sbjct 395 A-TNLQRVTYLVFDEA 409
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo
sapiens OX=9606 GN=DDX42 PE=1 SV=1
Length=938
Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/237 (21%), Positives = 82/237 (35%), Gaps = 33/237 (14%)
Query 529 DEESRICKALFLY-----TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
DE R+ F Y SH+R L+ S R K ++ ++ ++
Sbjct 407 DEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK-----IEKLARDILIDPIRVVQ 461
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
D+ + E+ Q +E + PS N L +LFV +A + L
Sbjct 462 GDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEF-------TSSGSVLLFVTKKANAEEL 514
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
N ++ G + M + ++ FK D +L+AT VA G
Sbjct 515 ANNLKQE------------GHNLGLLHGDMDQSERNKVISDFKKK-DIPVLVATDVAARG 561
Query 704 IDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI VI Y+ ++ I GR +G LLT + + +
Sbjct 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/136 (21%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
+P Q + A+ G++ I A TG GKT + H+ + + G V
Sbjct 275 QPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + ++ + + R + G + + + E +I++ TP L++++KK
Sbjct 335 TRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 394
Query 359 TIPSLSIFTLMIFDEC 374
+L + ++FDE
Sbjct 395 A-TNLQRVSYLVFDEA 409
>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo
abelii OX=9601 GN=DDX42 PE=2 SV=1
Length=942
Score = 97.5 bits (241), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/237 (21%), Positives = 82/237 (35%), Gaps = 33/237 (14%)
Query 529 DEESRICKALFLY-----TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
DE R+ F Y SH+R L+ S R K ++ ++ ++
Sbjct 407 DEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK-----IEKLARDILIDPIRVVQ 461
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
D+ + E+ Q +E + PS N L +LFV +A + L
Sbjct 462 GDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEF-------TSSGSVLLFVTKKANAEEL 514
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
N ++ G + M + ++ FK D +L+AT VA G
Sbjct 515 ANNLKQE------------GHNLGLLHGDMDQSERNKVISDFKKK-DIPVLVATDVAARG 561
Query 704 IDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI VI Y+ ++ I GR +G LLT + + +
Sbjct 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/136 (21%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
+P Q + A+ G++ I A TG GKT + H+ + + G V
Sbjct 275 QPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + ++ + + R + G + + + E +I++ TP L++++KK
Sbjct 335 TRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 394
Query 359 TIPSLSIFTLMIFDEC 374
+L + ++FDE
Sbjct 395 A-TNLQRVSYLVFDEA 409
>sp|Q8GY84|RH10_ARATH DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis
thaliana OX=3702 GN=RH10 PE=1 SV=2
Length=456
Score = 95.6 bits (236), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/190 (24%), Positives = 71/190 (37%), Gaps = 23/190 (12%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L +IL E PE+ +++F +T L + G +
Sbjct 250 YLVYILSEM----PESTSMIFTRTCDGTRFLALVLRS------------LGFRAIPISGQ 293
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
MT + L+ FKA G+ NIL+ T VA G+DI ++VI Y+ N I GR
Sbjct 294 MTQSKRLGALNKFKA-GECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTA 352
Query 732 RARGSKCFLLTSNAGVIEKE-QINMYKEKMM----NDSILRLQTWDEAVFREKILHIQTH 786
RA S + N +E QI K + + L + +K+ +
Sbjct 353 RAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYPAEEDEVLSLLERVAEAKKLSAMNMK 412
Query 787 EKFIRDSQEK 796
E R + +
Sbjct 413 ESGGRKRRGE 422
Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/219 (19%), Positives = 74/219 (34%), Gaps = 22/219 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKV---VF 295
P Q E A++GK+ I A TG GKT + +L + +KG+ F
Sbjct 31 NPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAF 90
Query 296 FA----NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
FA + Q F R + G + + +I+ TP L
Sbjct 91 FACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRL 150
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGL 408
+++ SL ++ DE + ++ ++ L +P +
Sbjct 151 WDHMSDTKGFSLKSLKYLVLDEA---------DRLLNEDFEKSLNQILEEIPLERKTFLF 201
Query 409 TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+A++ K L K+ A+ S + T+K
Sbjct 202 SATMTKKVRKLQRACLRNPVKIEAASKYSTVDTLKQQYR 240
>sp|A6R3R5|IF4A_AJECN ATP-dependent RNA helicase eIF4A OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=TIF1 PE=3
SV=1
Length=385
Score = 94.5 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQQQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/173 (16%), Positives = 58/173 (34%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
+E PE Q S NL + +P Q +P +KG + I
Sbjct 7 GLEEIPEGQIESNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVI 66
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K + + + A + +Q + V +
Sbjct 67 AQAQSGTGKT--ATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIEC 124
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + ++ + + +++ TP + + +++ + + + DE
Sbjct 125 HACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQR-RVLKTDHMKMFVLDEA 176
>sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53,
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH53 PE=1 SV=1
Length=616
Score = 96.8 bits (239), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 21/143 (15%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
I+F +T+ D L + K L G ++ ++ L
Sbjct 345 EHAKGGKCIVFTQTKRDADRLSYALA-----RSFKCEALHG--------DISQSQRERTL 391
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCF 739
F+ G NIL+AT VA G+D+ +L+I YE N + GR +GS
Sbjct 392 AGFR-DGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAIL 450
Query 740 LLTSNA----GVIEKEQINMYKE 758
+ + + +IE+E + + E
Sbjct 451 IYSQDQSRAVKIIEREVGSRFTE 473
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGK---VVFFANQIPV 302
Q + PAM+G++ I A TG GKT + I + +K + +G+ + A +
Sbjct 131 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTREL 190
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + F + + G T + Q+ D+ + TP +++ +K+G +
Sbjct 191 ARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALN- 247
Query 363 LSIFTLMIFDEC 374
LS ++ DE
Sbjct 248 LSEVQFVVLDEA 259
>sp|Q02748|IF4A_DROME Eukaryotic initiation factor 4A OS=Drosophila
melanogaster OX=7227 GN=eIF4A PE=1 SV=3
Length=403
Score = 94.9 bits (234), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 60/154 (39%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + L ++ E L+ ++ + EN KL LC + Y T +++
Sbjct 219 EVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLC----DLYDTLSITQSVI 274
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + G M ++ I+ F+ SG
Sbjct 275 FCNTRRKVDQLTQEMSIH----NFTVSAMHG--------DMEQRDREVIMKQFR-SGSSR 321
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LI T + GID+ Q +LVI Y+ N I
Sbjct 322 VLITTDLLARGIDVQQVSLVINYDLPSNRENYIH 355
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/139 (17%), Positives = 47/139 (34%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y KP Q +P ++G++ I A +G GKT + + ++ + +
Sbjct 46 YGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQIDT--SIRECQALI 103
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V E G T + +++ TP + + +
Sbjct 104 LAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMI 163
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ + L + DE
Sbjct 164 NR-KVLRTQYIKLFVLDEA 181
>sp|Q2HFP1|IF4A_CHAGB ATP-dependent RNA helicase eIF4A OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=TIF1 PE=3 SV=1
Length=397
Score = 94.9 bits (234), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 60/154 (39%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E+ KL+ L + Y T ++
Sbjct 213 EVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTL----SDLYETVTITQAVI 268
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + ++ + + M + I+ F+ SG
Sbjct 269 FCNTRRKVDWLTDKLQAR------------DFTVSAMHGDMDQTQRDLIMKEFR-SGSSR 315
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 316 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 349
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
++ PE Q S D NL S +P Q +P +KG + I
Sbjct 6 GLEDVPEGQIESNYDETVDSFDDMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVI 65
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K P + + + A + +Q + V +
Sbjct 66 AQAQSGTGKT--ATFSISVLQKIDPTVKSCQALILAPTRELAQQIQKVVIAIGDFMNIEC 123
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T+ ++ + + +I+ TP + + +++ I + + DE
Sbjct 124 HACIGGTSVRDDMKALQDGPQVIVGTPGRVHDMIQR-RILKTDQMKMFVLDEA 175
>sp|Q40466|IF413_TOBAC Eukaryotic initiation factor 4A-13 (Fragment)
OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Length=355
Score = 94.1 bits (232), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/144 (24%), Positives = 60/144 (42%), Gaps = 17/144 (12%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ ++ + L +R + L+ ++ + E KLE LC + Y T +++
Sbjct 229 EITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLC----DLYETLAITQSVI 284
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV TR VD L + + + + M + I+ F+ SG
Sbjct 285 FVNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFR-SGSSR 331
Query 693 ILIATSVADEGIDIAQCNLVILYE 716
+LI T + GID+ Q +LVI Y+
Sbjct 332 VLITTDLLARGIDVQQVSLVINYD 355
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/177 (17%), Positives = 63/177 (36%), Gaps = 5/177 (3%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
+ + + T + F D + + + Y KP Q +P KG
Sbjct 19 KMTELLGTEQEEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL 78
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
+ I A +G GKT C L++ + + + A + +Q + V +
Sbjct 79 DVIQQAQSGTGKT---ATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYL 135
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +V G T+ + +++ TP + + L++ ++ + + DE
Sbjct 136 GVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSL-RPDHIKMFVLDEA 191
>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
OX=510516 GN=prp5 PE=3 SV=1
Length=1186
Score = 97.2 bits (240), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 60/158 (38%), Gaps = 18/158 (11%)
Query 607 ENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
E+ K L +L Y N + ++FV+ + D L + G
Sbjct 784 EDKKFIRLLELLGNLYSTDENEDARALIFVERQEGADTLLRELMRK------------GY 831
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 832 PCMSIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDY 890
Query 725 IQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + + K+
Sbjct 891 VHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQS 928
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 49/134 (37%), Gaps = 7/134 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLI-CEHHLKKFP---QGQKGKVVFFANQIPV 302
Q + M G++ I A TG GKT ++ LI H+K + + +
Sbjct 581 QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLENMEGPVGLIMTPTREL 639
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q + + R G + + +II+ TP +++ L G +
Sbjct 640 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRV 699
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 700 TNLRRVTYVVLDEA 713
>sp|Q0UU86|IF4A_PHANO ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=TIF1 PE=3 SV=1
Length=396
Score = 94.5 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E+ KL+ L + Y T ++
Sbjct 212 EVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTL----SDLYETVTITQAVI 267
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 268 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMDQAQRDVIMKEFR-SGSSR 314
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 315 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/173 (16%), Positives = 59/173 (34%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
++ PE Q S NL + +P Q +P +KG + I
Sbjct 5 GLEDVPEGQIESNYDETTDSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVI 64
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K + + + A + +Q + V +
Sbjct 65 AQAQSGTGKT--ATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVAC 122
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T+ ++ + + +++ TP + + +++ + + + DE
Sbjct 123 HACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQR-RVLKTDHMKMFVLDEA 174
>sp|P47943|IF4A_SCHPO ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=tif1
PE=1 SV=2
Length=392
Score = 94.5 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ LC + Y T ++
Sbjct 208 EVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLC----DLYETVTVTQAVI 263
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + ++ + M + ++ F+ +G
Sbjct 264 FCNTRRKVDWLTEQLTER------------DFTVSSMHGDMDQAQRDTLMHEFR-TGSSR 310
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI T + GID+ Q +LVI Y+ N I
Sbjct 311 ILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/266 (15%), Positives = 94/266 (35%), Gaps = 18/266 (7%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
+ D++E S I+ Y E + + + P + Y +P Q +P + ++
Sbjct 1 MVDQLEDSVIETNYDEVIDT--FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERD 58
Query 260 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY 319
+ A +G GKT + K ++ + + A + +Q + V +
Sbjct 59 VLAQAQSGTGKT--ATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 379
G T + + +++ TP + + +++ +P+ + + DE
Sbjct 117 ECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPT-DAVQMFVLDEA----- 170
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
L + + Q++ TA V + A + L+ K ++
Sbjct 171 --------DEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILV 222
Query 440 ATVKHNLEELEQVVYKPQKFFRKVES 465
+ LE ++Q +K K+++
Sbjct 223 KKDELTLEGIKQFYVAVEKEEWKLDT 248
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP5
PE=3 SV=1
Length=1064
Score = 97.2 bits (240), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 16/138 (12%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +L E Y + + ++FV+ + D L + G G +
Sbjct 662 KFVRLLELLGELYADDDDVRALIFVERQEKADDLLREVLRR------------GYGCMSI 709
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ--- 726
+ G + + FK G I+IATSVA G+D+ Q LV+ Y+ ++ +
Sbjct 710 HGGKDQEDRNSTISDFK-KGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAG 768
Query 727 TRGRGRARGSKCFLLTSN 744
GR G+ +T
Sbjct 769 RTGRAGNTGTAVTFITEE 786
Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats.
Identities = 50/252 (20%), Positives = 98/252 (39%), Gaps = 19/252 (8%)
Query 172 KLALEKERNKFSELWIVEKGIKDVETEDLED-KMETSDIQIFYQEDPECQNLSENSCPPS 230
K+ L + R F W+ + + + +D+ D ++E I++ + P+
Sbjct 382 KIELNQIRKNF---WVEPQELSQMTEDDIADLRLELDGIKVSGKNVPKPVQKWSQCGLTR 438
Query 231 EVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-- 287
+ D ++ P + Q++ M G++ I A TG GKT +L H+K
Sbjct 439 PILDVVEGLGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVT 498
Query 288 GQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIIL 346
G G + + + Q S + + R G A + ++ +II+
Sbjct 499 GDDGAIALIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKRGAEIIVA 558
Query 347 TPQILVNNLK--KGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYL----DQKLGGS 398
TP +++ L G + +L T ++ DE P +M + D++
Sbjct 559 TPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMGFEP--QVMKIFNNVRPDRQTILF 616
Query 399 SGPLPQVI-GLT 409
S +P++I LT
Sbjct 617 SATMPRIIDALT 628
>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
OX=341663 GN=prp5 PE=3 SV=1
Length=1181
Score = 97.2 bits (240), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/159 (23%), Positives = 61/159 (38%), Gaps = 18/159 (11%)
Query 606 NENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
NE+ K L +L Y N + ++FV+ + D L + G
Sbjct 778 NEDKKFVRLLELLGNLYSSDENEDARALIFVERQEAADTLLRELMRK------------G 825
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 826 YPCMSIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLED 884
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + + K+
Sbjct 885 YVHRAGRTGRAGNTGTAVTFLTEDQERFSVDIAKALKQS 923
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 6/191 (3%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQL 248
+ E E ++E I++ + P+ + D ++ P + Q
Sbjct 518 DLAQMSEGELASLRLELDGIKVRGVDVPKPVQKWSQCGLGVQTLDVIDRLGYENPTSIQS 577
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFANQIPVYEQ 305
+ M G++ I A TG GKT L+ H+K + +G + + + Q
Sbjct 578 QAIPAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQ 637
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSL 363
+ + R G + ++ +I++ TP +++ L G + +L
Sbjct 638 IHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAANAGRVTNL 697
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 698 RRVTYVVLDEA 708
>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 /
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746
GN=PRP5 PE=3 SV=2
Length=862
Score = 96.8 bits (239), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 59/152 (39%), Gaps = 17/152 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALK-NWIEGNPKLSFLKPGILTGRGKTN 668
KL+ L I+ E +PE ++FV + D L + + G
Sbjct 505 KLQALLKIVDEFSVEDPEGKILIFVDKQEAADDLMVRLLNNQ-------ISCIVIHG--- 554
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMI 725
G +K + F +LIATS+A G+D+ NLVI Y+ + + +
Sbjct 555 ---GKDQVDRKHAIKQFSDKNGLRVLIATSIAARGLDVRGLNLVINYDAPSHMEDYVHRV 611
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR A G+ L+ S+ ++ + K
Sbjct 612 GRTGRAGATGTAVTLVLSSQEREIRDLVRAMK 643
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 8/191 (4%)
Query 192 IKDVETEDLED-KMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPF-KPRNYQL 248
+KDV E + + I++ + P Q ++ P S ++ + P Q
Sbjct 236 LKDVPPEKVTALRTAMDGIKVRGSDCPMPIQKWAQLGLPSSIMTVLEEKLGYDTPSPIQS 295
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFANQIPVYEQ 305
+ M G++ I A TG GKT ++ H+ P + G V + Q
Sbjct 296 QALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDGPIGVILTPTRELALQ 355
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSL 363
+ + + V G + + + +II+ TP +++ L G + +L
Sbjct 356 IQKELVNFTQAVELSVCCCYGGSPIESQIADLKRGTEIIVGTPGRVIDLLAANGGRVTNL 415
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 416 RRTTFLVLDEA 426
>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
OX=331117 GN=prp5 PE=3 SV=1
Length=1193
Score = 97.2 bits (240), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query 606 NENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
NE+ K L IL Y N + ++FV + D L + G
Sbjct 786 NEDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK------------G 833
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + G + ++ FKA G ILIATSVA G+D+ Q LV+ Y+ ++
Sbjct 834 YPCMSIHGGKDQIDRDSTIEDFKA-GIFPILIATSVAARGLDVKQLKLVVNYDAPNHLED 892
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + ++
Sbjct 893 YVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALRQS 931
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 55/139 (40%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI-CEHHLKKFP--QGQKGKV-VFFA 297
P + Q + M G++ I A TG GKT ++ LI H++ + +G + +
Sbjct 579 NPTSIQSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMT 637
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK- 356
+ Q + + R G + ++ +I++ TP +++ L
Sbjct 638 PTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAA 697
Query 357 -KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 698 NAGRVTNLRRVTYVVLDEA 716
>sp|Q89AF9|DEAD_BUCBP ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915
GN=deaD PE=3 SV=1
Length=602
Score = 96.0 bits (237), Expect = 4e-19, Method: Composition-based stats.
Identities = 68/379 (18%), Positives = 142/379 (37%), Gaps = 52/379 (14%)
Query 450 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 509
+++ + R + + + + Q+ + +K++ + +G Q+Y
Sbjct 62 LPLLHNIKLDVRVPQILVLTPTRELAVQVAEAFSNFSKKL------IGVHVLALYGGQRY 115
Query 510 EQWIVTVQKACMVF-QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDA----L 564
+ + +++K + P + + + L L H ++A + ++D
Sbjct 116 DLQLKSLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMT 175
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP-------KLEDL 614
+ + + +A E + +++RF + +E+ +++ P + K + L
Sbjct 176 EIPDRHQTALFSATMPEAIRRISRRFMKNPKEIRIQSNITTRPDIQQSYWMVYGKKTDAL 235
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L+ E TI+FV+T+ + +E G N M
Sbjct 236 IRFLEAEDFSA----TIIFVRTKNATLEVSEVLERY------------GYNSAALNGDMN 279
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
++ L+ K G +ILIAT VA G+D+ + + VI Y+ + + GR GRA
Sbjct 280 QSLREQTLEKLK-DGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRA 338
Query 734 -RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL-------HIQT 785
R K L N + ++ E+ MN SI + ++ L IQ
Sbjct 339 GRKGKALLFVEN----RERRLLRNIERAMNISISEVNLPKSDFLSKRRLEKFAQKVQIQL 394
Query 786 HEKFIRDSQE-KPKPVPDK 803
K + + + PK P+
Sbjct 395 DSKDLHEYRGLLPKLQPNN 413
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/120 (26%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KGK+ + A TG GKT L H++K + +++ + Q FS + +
Sbjct 42 KGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRV--PQILVLTPTRELAVQVAEAFSNFSK 99
Query 316 RH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G V + G ++ ++ + + II+ TP L+++LK+ T+ SLS ++ DE
Sbjct 100 KLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRTL-SLSNLHSLVLDEA 158
>sp|Q088J2|RHLB_SHEFN ATP-dependent RNA helicase RhlB OS=Shewanella
frigidimarina (strain NCIMB 400) OX=318167 GN=rhlB PE=3
SV=1
Length=434
Score = 94.9 bits (234), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/228 (22%), Positives = 95/228 (42%), Gaps = 25/228 (11%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRDPSNE--NPKLEDLC 615
RM DA L FS + E+ D E+ +++ LE S++ E P +ED
Sbjct 185 RMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIEPLEKTSKNIKEEIFYPSMEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +++EG+ + G+LTG +
Sbjct 245 RLLLSLIEEDWPDKAIVFSNTKHSCEKLWSYLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGR 732
+ IL+ F SG+ ++L+AT VA G+ I+ + V Y+ + + I GR
Sbjct 293 KKRIRILEQF-TSGEIDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
+G E+ +N+ + + + + + +D+ + I
Sbjct 352 QKGISISF------ACEEYALNLPEIETYINHSIPVSNYDKDALLDDI 393
Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSV 309
+ K+ A TG GKT L+ +HL + K + A + Q
Sbjct 44 LNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G +V + G + + + DI+I T +++ +++G I SLS +
Sbjct 104 AKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVI-SLSHIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q58083|H669_METJA Probable ATP-dependent RNA helicase MJ0669
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM
2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669
PE=1 SV=1
Length=367
Score = 93.7 bits (231), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/158 (23%), Positives = 57/158 (36%), Gaps = 21/158 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
NEN + E LC +L+ N E ++F KT+ L + + G
Sbjct 222 NENERFEALCRLLK-----NKEFYGLVFCKTKRDTKELASMLRD------------IGFK 264
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM- 724
+ ++ ++ ++ FK ILIAT V GID+ N VI Y N
Sbjct 265 AGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYM 323
Query 725 --IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
I GR +G ++ + K K+
Sbjct 324 HRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKI 361
Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 45/272 (17%), Positives = 103/272 (38%), Gaps = 17/272 (6%)
Query 242 KPRNYQLELALPAMKGK-NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
KP + Q+++ + + N + A TG GKT + ++ + + +
Sbjct 28 KPTDIQMKVIPLFLNDEYNIVAQARTGSGKT--ASFAIP-LIELVNENNGIEAIILTPTR 84
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q ++ I G A ++ ++N +I++ TP +++++ +GT+
Sbjct 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK-ALKNANIVVGTPGRILDHINRGTL 143
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS----VGVGD 416
L I DE + F +K+ + +++ +A+ +
Sbjct 144 N-LKNVKYFILDEA------DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLA 196
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
K + K+ A+++ S + ++ E + K ++F+ V + K +A
Sbjct 197 KKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKE-LA 255
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
++RD A I DL + + QK
Sbjct 256 SMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 287
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0172200 PE=2
SV=1
Length=708
Score = 96.4 bits (238), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/179 (18%), Positives = 64/179 (36%), Gaps = 20/179 (11%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
++ ++ + + + D K L IL+ + P + I+F T+ + D
Sbjct 383 VQVNIGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQ---EPGSKIIIFCSTKRMCD 439
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L + G + + + + +L F+ SG IL+AT VA
Sbjct 440 QLARNLARQ-------------YGASAIHGDKSQAERDSVLSEFR-SGRCPILVATDVAA 485
Query 702 EGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
G+DI +V+ Y++ + + I GR A G + + + +
Sbjct 486 RGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFCDQDSKYASDLVKILE 544
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/203 (16%), Positives = 66/203 (33%), Gaps = 19/203 (9%)
Query 179 RNKFSELWIVEKGIKDVETEDLE---DKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
+N FSE ++ + E E + +Q PP + +
Sbjct 145 QNVFSEAASGDRTSPEAYRAKHEITIVGNEAPAPFMTFQSTG---------FPPEILREV 195
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--- 292
P Q + A++ ++ + A TG GKT + + +
Sbjct 196 QQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTL--GYLIPGFILLKRLQHNSRDGP 253
Query 293 -VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
V+ + + Q + K+ + G + + + DI++ TP L
Sbjct 254 TVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 313
Query 352 VNNLKKGTIPSLSIFTLMIFDEC 374
+ L+ + SL + ++ DE
Sbjct 314 NDILEMRRV-SLHQVSYLVLDEA 335
>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic
OS=Arabidopsis thaliana OX=3702 GN=RH3 PE=1 SV=2
Length=748
Score = 96.4 bits (238), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/171 (22%), Positives = 64/171 (37%), Gaps = 20/171 (12%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
DL +EKL E + + K L ++ TI+F +T+ D +
Sbjct 312 DLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVS 368
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ + L + ++ ++ L+AF+ G +L+AT VA G+
Sbjct 369 LALSNSIATEAL-------------HGDISQHQRERTLNAFR-QGKFTVLVATDVASRGL 414
Query 705 DIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQ 752
DI +LVI YE + + GR GS + TS+ +
Sbjct 415 DIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSL 465
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 21/180 (12%)
Query 213 YQEDPECQNLSENSCPPSEVS----DTNLYSPFKPR------NYQLELALPAMKGKNTII 262
Y D + N+ + +S L + R Q + +PA++G++ I
Sbjct 85 YDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIA 144
Query 263 CAPTGCGKTFVSLLICEHHL--------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
A TG GKT + L G+ K + A + +Q + +
Sbjct 145 RAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESA 204
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + + + D+++ TP +++ L +G L ++ DE
Sbjct 205 PYLSTVC--VYGGVSYTIQQSALTRGVDVVVGTPGRIID-LIEGRSLKLGEVEYLVLDEA 261
>sp|A6RJ45|IF4A_BOTFB ATP-dependent RNA helicase eIF4A OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=tif1 PE=3 SV=1
Length=398
Score = 94.1 bits (232), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E+ KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMDQGQRDLIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/139 (17%), Positives = 53/139 (38%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y +P Q +P +KG + I A +G GKT + K P ++ + +
Sbjct 41 YAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKT--ATFSISVLQKLDPNVKQCQALI 98
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G T+ ++ + + +++ TP + + +
Sbjct 99 LAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMI 158
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ + + + DE
Sbjct 159 QRRFL-KTDSMKMFVLDEA 176
>sp|Q7RV88|IF4A_NEUCR ATP-dependent RNA helicase eIF4A OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=tif-1 PE=3 SV=2
Length=397
Score = 94.1 bits (232), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V E + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 213 EVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 268
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 269 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMDQAQRDLIMKEFR-SGSSR 315
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 316 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 349
Score = 63.3 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 60/173 (35%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
++ PE Q S + NL +P Q +P +KG + I
Sbjct 6 GLEDIPEGQIESNYDETVDSFDEMNLKPELLRGIYAYGFERPSAIQQRAIMPVIKGHDVI 65
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K P + + + A + +Q + V +
Sbjct 66 AQAQSGTGKT--ATFSISVLQKIDPSLKACQALILAPTRELAQQIQKVVVAIGDFMNIEC 123
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T+ ++ + + +++ TP + + +++ + + + DE
Sbjct 124 HACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFL-KTDSMKMFVLDEA 175
>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus fumigatus (strain ATCC MYA-4609 /
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp5 PE=3 SV=1
Length=1211
Score = 96.8 bits (239), Expect = 5e-19, Method: Composition-based stats.
Identities = 36/159 (23%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query 606 NENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
NE+ K L IL Y N + ++FV + D L + G
Sbjct 804 NEDTKFVRLLEILGNLYSDDANEDARALIFVDRQEAADTLLRELMRK------------G 851
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 852 YPCMSIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLED 910
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + ++
Sbjct 911 YVHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALRQS 949
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 55/139 (40%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI-CEHHLKKFP--QGQKGKV-VFFA 297
P + Q + M G++ I A TG GKT ++ LI H++ + +G + +
Sbjct 597 NPTSIQSQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIRDQRPLENMEGPIGLIMT 655
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK- 356
+ Q + + R G + ++ +I++ TP +++ L
Sbjct 656 PTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIVVCTPGRMIDLLAA 715
Query 357 -KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 716 NAGRVTNLRRVTYVVLDEA 734
>sp|A7EGL7|IF4A_SCLS1 ATP-dependent RNA helicase eIF4A OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=tif1 PE=3 SV=1
Length=398
Score = 94.1 bits (232), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E+ KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEDWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMDQGQRDLIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/139 (17%), Positives = 53/139 (38%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y +P Q +P +KG + I A +G GKT + K P ++ + +
Sbjct 41 YAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKT--ATFSISVLQKLDPNVKQCQALI 98
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G T+ ++ + + +++ TP + + +
Sbjct 99 LAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMI 158
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ + + + DE
Sbjct 159 QRRFL-KTDSMKMFVLDEA 176
>sp|Q0W6L1|HELS_METAR ATP-dependent DNA helicase Hel308 OS=Methanocella
arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
OX=351160 GN=hel308 PE=3 SV=1
Length=740
Score = 96.0 bits (237), Expect = 6e-19, Method: Composition-based stats.
Identities = 58/316 (18%), Positives = 115/316 (36%), Gaps = 23/316 (7%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + GKN + PT GKT ++ + + + GK ++ + +
Sbjct 28 QAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSI-----AEGGKAIYIVPLKALASE 82
Query 306 QKSVF----SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ F + G +V +G ++ + DII+ T + + L+ G
Sbjct 83 KYDRFLEFSKLPIKPDGVKVGIATGDF---DSRDEYLGEKDIIVATSEKTDSLLRNGA-S 138
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD--AKN 419
LS ++++ DE H P KL + L Q++ L+A++G AK
Sbjct 139 WLSGLSVVVADEVHLI--DSPNRGPTLEVTLAKLRKINVNL-QILALSATIGNAKALAKW 195
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYK--PQKFFRKVESRISDKFKYI-IA 476
D AL +L V ++ ++ V P + V + + + + A
Sbjct 196 MDAALVQSEWRPTTLKEGVFYGRAITFKKEKRTVNNAGPDEVNSLVADTLEEGGQCLVFA 255
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ +ES+A+++ + L Q +E K +Q ++ + ++ +
Sbjct 256 NTRKSSESIAQKVARSLSKKLQPAEKEQ-LAKLKQDVLRHAETDTCEKLAECVGNGVAFH 314
Query 537 ALFLYTSHLRKYNDAL 552
L H R D
Sbjct 315 HAGLKGEHRRIVEDGF 330
>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS
513.88 / FGSC A1513) OX=425011 GN=prp5 PE=3 SV=2
Length=1180
Score = 96.8 bits (239), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/155 (23%), Positives = 58/155 (37%), Gaps = 18/155 (12%)
Query 610 KLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
K L +L Y N + ++FV + DAL + G
Sbjct 780 KFVRLLELLGNLYSSDENEDARALIFVDRQEAADALLRELMRK------------GYPCM 827
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ- 726
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++ +
Sbjct 828 SIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHR 886
Query 727 --TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+ LT + + K+
Sbjct 887 AGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQS 921
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 49/134 (37%), Gaps = 7/134 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLI-CEHHLKKFP---QGQKGKVVFFANQIPV 302
Q + M G++ I A TG GKT ++ LI H+K + + +
Sbjct 574 QAQAIPAIMSGRDVIGVAKTGSGKT-IAFLIPMFRHIKDQRPLDNMEGPVGLIMTPTREL 632
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q + + R G + + +II+ TP +++ L G +
Sbjct 633 ATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGAEIIVCTPGRMIDLLAANAGRV 692
Query 361 PSLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 693 TNLRRVTYVVLDEA 706
>sp|Q5JGV6|HELS_THEKO ATP-dependent DNA helicase Hel308 OS=Thermococcus
kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
OX=69014 GN=hel308 PE=3 SV=1
Length=1125
Score = 96.4 bits (238), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/184 (24%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query 247 QLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E ++GKN ++ PT GKT VS ++ + L + GK V+ + E+
Sbjct 28 QAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKL----LSEGGKAVYLVPLKALAEE 83
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F K +E G RV +G ++ + DII+ T + + L+ G +
Sbjct 84 KYREF-KEWEVLGLRVAATTGDY---DSTDEWLGRYDIIVATAEKFDSLLRHGA-SWIKD 138
Query 366 FTLMIFDECHNTSKQH---PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
L++ DE H + ++ ++ K Q++ L+A+VG A+ E
Sbjct 139 VKLVVADEVHL-IGSYDRGATLEMILTHMLGK--------AQILALSATVGN--AEELAE 187
Query 423 ALDY 426
LD
Sbjct 188 WLDA 191
>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase
prp5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp5 PE=3 SV=1
Length=1173
Score = 96.4 bits (238), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/170 (22%), Positives = 67/170 (39%), Gaps = 20/170 (12%)
Query 606 NENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
NE K L +L Y N + +++FV + D L + G
Sbjct 770 NEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRK------------G 817
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + G + ++ FKA G +LIATSVA G+D+ Q LV+ Y+ ++
Sbjct 818 YPCMSIHGGKDQIDRDSTIEDFKA-GIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLED 876
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRL 768
+ GR G+ LT + + K+ + + +++ +L
Sbjct 877 YVHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKL 926
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 5/133 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFANQIPVY 303
Q + M G++ I A TG GKT L+ H+K + +G + + +
Sbjct 568 QAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELA 627
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIP 361
Q + + R G + ++ +II+ TP +++ L G +
Sbjct 628 TQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVT 687
Query 362 SLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 688 NLRRVTYVVLDEA 700
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus
musculus OX=10090 GN=Ddx42 PE=1 SV=3
Length=929
Score = 96.4 bits (238), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 82/237 (35%), Gaps = 33/237 (14%)
Query 529 DEESRICKALFLY-----TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
DE R+ F Y SH+R L+ S R K ++ ++ ++
Sbjct 407 DEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK-----IEKLARDILIDPIRVVQ 461
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
D+ + E+ Q +E + PS N L +LFV +A + L
Sbjct 462 GDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEF-------TSSGSVLLFVTKKANAEEL 514
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ ++ G + M + ++ FK D +L+AT VA G
Sbjct 515 ASNLKQE------------GHNLGLLHGDMDQSERNKVISDFKKK-DIPVLVATDVAARG 561
Query 704 IDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI VI Y+ ++ I GR +G LLT + + +
Sbjct 562 LDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/136 (21%), Positives = 59/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
+P Q + A+ G++ I A TG GKT + H+ + + G V
Sbjct 275 QPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCP 334
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q + ++ + + R + G + + + E +I++ TP L++++KK
Sbjct 335 TRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 394
Query 359 TIPSLSIFTLMIFDEC 374
+L + ++FDE
Sbjct 395 A-TNLQRVSYLVFDEA 409
>sp|A3LP87|DBP8_PICST ATP-dependent RNA helicase DBP8 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP8 PE=3 SV=2
Length=445
Score = 94.5 bits (233), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/242 (17%), Positives = 86/242 (36%), Gaps = 37/242 (15%)
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
F V I L+ ++ ++ + P+ E +
Sbjct 210 FLHEVETVDQVAIPSTLSIKYVFVPSYVKEAYLNSILRLPQYEK--------------ST 255
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
++FV + L+ + KL F + ++ M + + FKA G
Sbjct 256 AVIFVNRTTTAEVLRRTLR---KLEFRVASL---------HSEMPQSERTNSVQRFKA-G 302
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 747
ILIAT VA G+DI LV+ ++ + I GR RA R + + +
Sbjct 303 AARILIATDVASRGLDIPSVELVVNFDIPADPDDFIHRVGRTARAGRSGDAVTIIAEKDI 362
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK-----FIRDSQEKPKPVPD 802
++I +E++ L + D++V + + ++ +++ + + +
Sbjct 363 ---DRIASIEERINKKMELLEEVTDDSVITDSLTATSVAKRESLMEMDKENFGEKRKINR 419
Query 803 KE 804
K+
Sbjct 420 KK 421
Score = 56.7 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/123 (20%), Positives = 42/123 (34%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + I A TG GKT + P G G V + Q F+
Sbjct 36 LSGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPFGIFGLV--LTPTRELALQIAEQFAALG 93
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIF 371
+++ + G ++ + +I TP L +++ TI L ++
Sbjct 94 ASMNIKISVVVGGEDFVKQTLELQKKPHFVIATPGRLADHILNSGEETISGLRRIKYLVL 153
Query 372 DEC 374
DE
Sbjct 154 DEA 156
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis
thaliana OX=3702 GN=RH14 PE=1 SV=2
Length=619
Score = 95.6 bits (236), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 56/152 (37%), Gaps = 20/152 (13%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L IL+ + P + I+F T+ + D L + G
Sbjct 388 EKQRRLEQILRSQ---EPGSKVIIFCSTKRMCDQLTRNLTRQ-------------FGAAA 431
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMI 725
+ + P + +L+ F+ SG +L+AT VA G+D+ V+ Y++ + + I
Sbjct 432 IHGDKSQPERDNVLNQFR-SGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRI 490
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR A G + I + +
Sbjct 491 GRTGRAGATGQAFTFFGDQDSKHASDLIKILE 522
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/186 (17%), Positives = 62/186 (33%), Gaps = 13/186 (7%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+ + E + + P + PP + + P Q +
Sbjct 137 PEAYSRRHEITVSGGQVP------PPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWP 190
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----VVFFANQIPVYEQQKS 308
AM+G++ + A TG GKT + L + ++ + + Q +
Sbjct 191 IAMQGRDIVAIAKTGSGKTL--GYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQE 248
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ T + G + + + DI++ TP L + L+ I SL +
Sbjct 249 EAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRI-SLRQISY 307
Query 369 MIFDEC 374
++ DE
Sbjct 308 LVLDEA 313
>sp|A4QVP2|IF4A_PYRO7 ATP-dependent RNA helicase eIF4A OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=TIF1 PE=3 SV=1
Length=396
Score = 93.7 bits (231), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 212 EVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 267
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 268 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMDQAQRDLIMKEFR-SGSSR 314
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 315 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348
Score = 59.4 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
++ PE Q S + NL S +P Q +P +KG + I
Sbjct 5 GLEDVPEGQIESNYDETVDSFDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVI 64
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K ++ + + A + +Q + V +
Sbjct 65 AQAQSGTGKT--ATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFMNIEC 122
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T+ ++ + + +++ TP + + +++ + + + DE
Sbjct 123 HACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFL-KTDGMKMFVLDEA 174
>sp|Q65N62|CSHA_BACLD DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM
2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL
NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Length=487
Score = 94.9 bits (234), Expect = 7e-19, Method: Composition-based stats.
Identities = 60/379 (16%), Positives = 126/379 (33%), Gaps = 41/379 (11%)
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQ 517
+ +I+ + I A ++ T LA ++ ++L + Q + +G Q + I ++
Sbjct 60 PLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALK 119
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA- 576
K + I + + D ++ ++ ++ SNV A
Sbjct 120 KNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDE---ADEMLNMGFIEDIESILSNVPAE 176
Query 577 -------AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEY 622
A + + +RF + ++ +++ + N + L L
Sbjct 177 HQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL 236
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ + I+F +T+ VD L + L G + +T + L
Sbjct 237 DIQSPELAIVFGRTKRRVDELTEALN------------LRGYTAEGIHGDLTQAKRMVAL 284
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCF 739
FK G +L+AT VA G+DI+ V ++ + + GR G
Sbjct 285 RKFK-QGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMT 343
Query 740 LLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799
+T + + K KM ++ T DEA+ ++ + + I ++
Sbjct 344 FITPREKDMLRAIEQTTKRKMDR---MKAPTLDEAIEGQQQVTVDRIRTIIEENNLNFYM 400
Query 800 VPDKENKKLLCRKCKALAC 818
E + A
Sbjct 401 TAAAELLEDHDSVTVVAAA 419
Score = 53.2 bits (126), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/128 (22%), Positives = 49/128 (38%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + K+ I A TG GKT + K P+ + + A + Q
Sbjct 30 QAQTIPLGLANKDVIGQAQTGTGKT--AAFGIPLVEKINPESPNIQAIVIAPTRELAIQV 87
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + RV I G + + +N II+ TP L++++ + T+ L
Sbjct 88 SEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLLDHINRRTM-RLQTV 146
Query 367 TLMIFDEC 374
++ DE
Sbjct 147 NTVVLDEA 154
>sp|Q73EU1|CSHA_BACC1 DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus cereus (strain ATCC 10987 / NRS 248) OX=222523
GN=cshA PE=3 SV=1
Length=525
Score = 94.9 bits (234), Expect = 8e-19, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 129/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSIL-RLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ + +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|Q6CH58|RRP3_YARLI ATP-dependent rRNA helicase RRP3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RRP3
PE=3 SV=1
Length=480
Score = 94.5 bits (233), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 37/183 (20%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +++ E N I+F +T++ + + G G
Sbjct 290 KDTHLVYLVSE----NAGNSMIIFARTKSDTQRISLLLRN------------LGYGAIPL 333
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ A+ L+ FK SG NILIAT VA G+DI +LVI Y+ + I G
Sbjct 334 HGDLSQTARLGALNKFK-SGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVG 392
Query 730 R-GRA-RGSKCFLLTSNAGV------------------IEKEQINMYKEKMMNDSILRLQ 769
R RA R K L S + +E E + ++ E++ S +Q
Sbjct 393 RTARAGRAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVMLFSERVAEASRAAIQ 452
Query 770 TWD 772
Sbjct 453 EMK 455
Score = 77.1 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 2/199 (1%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
E E N I++ D E E+ + + + + + + + S
Sbjct 20 ESEDNDAIAQEILDTTKSDNEEEEPKKSSKNYTSVEVDESEEQTKTFKDLGVIDSICETC 79
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
KP Q + A++G++ I A TG GKT + L + PQ V
Sbjct 80 EELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQ--PLYCVV 137
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q F G R + G + + +I+ TP LV++L
Sbjct 138 LAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPHVIVATPGRLVDHL 197
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL ++ DE
Sbjct 198 ENTKGFSLRTLKFLVMDEA 216
>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0827700
PE=2 SV=2
Length=758
Score = 95.6 bits (236), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/171 (20%), Positives = 62/171 (36%), Gaps = 20/171 (12%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
DL +EKL E + P K L ++ TI+F KT+ D +
Sbjct 312 DLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVY---AKGGKTIVFTKTKRDADEVS 368
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ + + ++ ++ L+ F+ G +L+AT VA G+
Sbjct 369 LALTNSI-------------ASEALHGDISQHQRERTLNGFR-QGKFTVLVATDVAARGL 414
Query 705 DIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQ 752
DI +L+I YE + + GR G+ + T++ +
Sbjct 415 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSL 465
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/153 (20%), Positives = 58/153 (38%), Gaps = 15/153 (10%)
Query 234 DTNLYSPFKPR------NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL----- 282
L S + R Q + +PA+ G++ I A TG GKT + L
Sbjct 112 PEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDD 171
Query 283 -KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
+ +G+ +V+ A + +Q + + + + G + NV +
Sbjct 172 GRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVC--VYGGVSYNVQQNALSRGV 229
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D+++ TP +++ L G L ++ DE
Sbjct 230 DVVVGTPGRIID-LINGGSLQLGEVKYLVLDEA 261
>sp|Q81IT9|CSHA_BACCR DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=cshA PE=2 SV=2
Length=533
Score = 94.5 bits (233), Expect = 9e-19, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 128/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSIL-RLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43
OS=Homo sapiens OX=9606 GN=DDX43 PE=1 SV=2
Length=648
Score = 95.2 bits (235), Expect = 9e-19, Method: Composition-based stats.
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 22/195 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E K + LQ + I+FV +A+ D L + + IL
Sbjct 470 EEEKWSHMQTFLQSMSSTD---KVIVFVSRKAVADHLSSDL------------ILGNISV 514
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIK 723
+ + ++ L+ FK +G ILIAT +A G+D+ V +++ N +
Sbjct 515 ESLHGDREQRDREKALENFK-TGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVH 573
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
I GR G LT N + E IN+ + N SI F+
Sbjct 574 RIGRTGRAGRTGVSITTLTRNDWRVASELINILERA--NQSIPEELVSMAERFKAHQQKR 631
Query 784 QTHEKFIRDSQEKPK 798
+ K R Q +PK
Sbjct 632 EMERKMERP-QGRPK 645
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 63/162 (39%), Gaps = 6/162 (4%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
P C C P + + KP Q + ++G + I A TG GKT L+
Sbjct 239 PTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLM 298
Query 277 ICEHHLKKFPQGQKGK----VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
HL P + + ++ + Q + KY G R + G +
Sbjct 299 PGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKY-SYKGLRSVCVYGGGNRDE 357
Query 333 PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+E++ + DIII TP L N+L+ +L T ++ DE
Sbjct 358 QIEELKKGVDIIIATPGRL-NDLQMSNFVNLKNITYLVLDEA 398
>sp|A5E0U9|DBP8_LODEL ATP-dependent RNA helicase DBP8 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP8 PE=3 SV=1
Length=444
Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 19/184 (10%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
E+ ++FV + L+ + + ++ M + L F
Sbjct 255 EESTAVVFVNRTMTAEVLRRMLRKLE------------FKVASLHSEMPQTERTNSLHRF 302
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNA 745
KA G ILIAT VA G+DI LV+ ++ + I GR AR + S
Sbjct 303 KA-GAARILIATDVASRGLDIPTVELVVNFDIPADPDDFIHRVGR-TARAGRKGDAISII 360
Query 746 GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK-----FIRDSQEKPKPV 800
G + E+I +E++ L D+ V + + T ++ ++S + + V
Sbjct 361 GEKDIERIESIEERINKKMELLEGVDDDKVINDSLQKATTAKREAMLDMDKESFGERRKV 420
Query 801 PDKE 804
K+
Sbjct 421 NKKK 424
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I A TG GKT + + P G G + + Q F+
Sbjct 36 EILKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLI--LTPTRELALQIAEQFAA 93
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+V + G ++ + +I TP L +++ T+ L +
Sbjct 94 LGALMNIKVCVVVGGEDFVKQTLELQKKPHFVIATPGRLADHILNSGEETVSGLRRIKYL 153
Query 370 IFDEC 374
+ DE
Sbjct 154 VLDEA 158
>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP5 PE=3 SV=1
Length=1072
Score = 95.6 bits (236), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/158 (21%), Positives = 61/158 (39%), Gaps = 19/158 (12%)
Query 606 NENPKLEDLCFILQE---EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
+ + K L IL E E+ + T++FV + D L +
Sbjct 632 DGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQR------------ 679
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G + + G + + FK +GD I++ATSVA G+D+ + LVI Y+ ++
Sbjct 680 GYVCASLHGGKEQVDRDEAIKNFK-NGDVPIIVATSVAARGLDVKELKLVINYDAPNHME 738
Query 723 KMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ GR +G+ +T + + +
Sbjct 739 DYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRALE 776
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/195 (18%), Positives = 75/195 (38%), Gaps = 12/195 (6%)
Query 192 IKDVETEDLED------KMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPR 244
+ VE ++++ ++E I+I Q+ P +N P + P
Sbjct 368 VPPVEVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPT 427
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFANQIP 301
+ Q + M G++ I A TG GKT LL H++ + V +
Sbjct 428 SIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRE 487
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
+ Q + + R + G ++ + + + + +++I TP +++ L G
Sbjct 488 LASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGR 547
Query 360 IPSLSIFTLMIFDEC 374
+ ++ T ++ DE
Sbjct 548 VTNVRRTTYIVMDEA 562
>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) OX=283643 GN=PRP5 PE=3 SV=1
Length=1072
Score = 95.6 bits (236), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/158 (21%), Positives = 61/158 (39%), Gaps = 19/158 (12%)
Query 606 NENPKLEDLCFILQE---EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
+ + K L IL E E+ + T++FV + D L +
Sbjct 632 DGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQR------------ 679
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G + + G + + FK +GD I++ATSVA G+D+ + LVI Y+ ++
Sbjct 680 GYVCASLHGGKEQVDRDEAIKNFK-NGDVPIIVATSVAARGLDVKELKLVINYDAPNHME 738
Query 723 KMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ GR +G+ +T + + +
Sbjct 739 DYVHRAGRTGRAGNKGTCITFITPEQERFSVDIVRALE 776
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/195 (18%), Positives = 75/195 (38%), Gaps = 12/195 (6%)
Query 192 IKDVETEDLED------KMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPR 244
+ VE ++++ ++E I+I Q+ P +N P + P
Sbjct 368 VPPVEVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLDVIKHQGWETPT 427
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFANQIP 301
+ Q + M G++ I A TG GKT LL H++ + V +
Sbjct 428 SIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQRPVSGSEGPIAVVMSPTRE 487
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
+ Q + + R + G ++ + + + + +++I TP +++ L G
Sbjct 488 LASQIYKECQPFLKVLNIRASCCVGGSSISEDIAAMKKGAEVVICTPGRMIDLLTANNGR 547
Query 360 IPSLSIFTLMIFDEC 374
+ ++ T ++ DE
Sbjct 548 VTNVRRTTYIVMDEA 562
>sp|Q0CXD0|IF4A_ASPTN ATP-dependent RNA helicase eIF4A OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=tif1
PE=3 SV=2
Length=396
Score = 92.9 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 212 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 267
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 268 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQSQRDIIMKEFR-SGSSR 314
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 315 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 348
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 14/188 (7%)
Query 187 IVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+ +KG++D+ E + + F + + + L Y +P
Sbjct 1 MADKGLEDL-PEGMIESNYEDVTDSFDSMELKAELLRGV----------YAYGFERPSAI 49
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q +P +KG + I A +G GKT + K P + + + A + +Q
Sbjct 50 QQRAIMPIIKGNDVIAQAQSGTGKT--ATFSISALQKIDPNLKACQALIVAPTRELAQQI 107
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ V + G TA ++ + E I++ TP + + +++ +
Sbjct 108 QKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQR-RVLKTDQM 166
Query 367 TLMIFDEC 374
L I DE
Sbjct 167 KLFILDEA 174
>sp|A1CFV3|DBP5_ASPCL ATP-dependent RNA helicase dbp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp5 PE=3 SV=1
Length=487
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/242 (19%), Positives = 89/242 (37%), Gaps = 35/242 (14%)
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
++ ++ D A + Q E ++ ++ + D S+E K +
Sbjct 251 LLPRDIQVVLFSATFPDHVHAYAAKFAPNANELTLQHEELTVEGIKQLYLDCSDEEDKYK 310
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L + Y L +I+FV+TR ++ + + G + G
Sbjct 311 TLVQL----YGLLTVGSSIIFVQTRTSASEIEKRM------------VAEGHTVASLTGG 354
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG------------- 719
+ + + I+D F+ SG+ +LI T+V GID++ ++VI Y+
Sbjct 355 IDVTKRDEIIDKFR-SGEAKVLITTNVLARGIDVSTVSMVINYDIPELHRPGVPERQADF 413
Query 720 -NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
+ I GR G +++ E + +N + + N I R+ T D +
Sbjct 414 QTYLHRIGRTGRFGRVGVSISFVSNRE---EWDMLNQIQ-RYFNTEIQRVDTKDWDEVED 469
Query 779 KI 780
I
Sbjct 470 II 471
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query 258 KNTIICAPTGCGKTFVSLL--ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KN + + +G GKT +L + L + + + A + Q V S +
Sbjct 117 KNLVGQSQSGTGKTAAFVLNALSRVDLSTEQMQKTPQALILAPTRELARQIVGVVSVMGQ 176
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + A+ + +E + I + TP +++ +K+ I + +++ DE
Sbjct 177 FLDGLIIG-TAVPADINNRPKRLECS-IAVGTPGTVMDMIKR-RIMVPNKLKVLVLDEA 232
>sp|A5DU73|PRP28_LODEL Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508
GN=PRP28 PE=3 SV=1
Length=597
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/142 (24%), Positives = 58/142 (41%), Gaps = 15/142 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ +L L ++Q N + I+F + + D L +E N L+ + G
Sbjct 441 ESARLSKLIKVVQGHKRRNRNALVIIFANFKHVCDVLSLELEQNNLLN------VVIHGS 494
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ A++ L+ F+ IL+AT VA GID+ +LVI Y+ + I
Sbjct 495 KS------QEAREEALEDFRTH-QAPILVATDVAARGIDVPNVSLVINYQMSKKFDEYIH 547
Query 727 TRGRGRARG--SKCFLLTSNAG 746
GR G + + +A
Sbjct 548 RIGRTGRAGNLGESYTFLDDAD 569
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 73/199 (37%), Gaps = 15/199 (8%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT-NLYSPFKPRNYQL 248
K + ++ D E I ++ P + S ++ + + +P Q
Sbjct 154 KLLSEMTDRDWRIFNEDYGITTKGKKIPHATRSWDESGLDPKILASLKSFGFRQPTPVQR 213
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--------QKGKVVFFANQI 300
+++ ++ + A TG GKT LL H+L + + + A
Sbjct 214 ASIPISLELRDVVGVAETGSGKTLAFLLPLLHYLSRVDGNYLNYEKVRNEPLALVLAPTR 273
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-----VENNDIIILTPQILVNNL 355
+ Q K+ ++ G+ V I G ++QI I++ TP L++++
Sbjct 274 ELALQITQEAEKFGKQLGFNVLSIIGGRQYQETMDQIDNMIVGRGVHIVVGTPGRLLDSV 333
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ + + L + DE
Sbjct 334 ERKILNFSKCYYL-VMDEA 351
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis
thaliana OX=3702 GN=RH46 PE=2 SV=2
Length=645
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/152 (20%), Positives = 56/152 (37%), Gaps = 20/152 (13%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L IL+ + P + I+F T+ + D L + G
Sbjct 391 EKHSRLEQILRSQ---EPGSKIIIFCSTKRMCDQLARNLTRT-------------FGAAA 434
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMI 725
+ + + +L+ F+ SG +L+AT VA G+D+ +V+ Y++ + + I
Sbjct 435 IHGDKSQAERDDVLNQFR-SGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRI 493
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR A G + I + +
Sbjct 494 GRTGRAGATGLAYTFFGDQDAKHASDLIKILE 525
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 64/185 (35%), Gaps = 11/185 (6%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+ E + + P + P + + P Q +
Sbjct 140 PEAYCRKHEITVSGGQVP------PPLMSFEATGLPNELLREVYSAGFSAPSPIQAQSWP 193
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKVVFFANQIPVYEQ-QKSV 309
AM+ ++ + A TG GKT L+ HL++ ++ + + Q Q
Sbjct 194 IAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEA 253
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
K+ + + G + +++I DI++ TP L + L+ I SL + +
Sbjct 254 L-KFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRI-SLHQVSYL 311
Query 370 IFDEC 374
+ DE
Sbjct 312 VLDEA 316
>sp|Q6C9P3|DBP3_YARLI ATP-dependent RNA helicase DBP3 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP3 PE=3
SV=1
Length=532
Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/187 (21%), Positives = 71/187 (38%), Gaps = 20/187 (11%)
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP--KLEDLCFILQEEYHLNPETITILF 633
A GF + + ++L + +++ +P K L +L++ N + ++F
Sbjct 317 AEGFMKTPTKVMIGERDELAANKRITQSVEVLDPRAKEGRLLDLLRQY--ANDDFKILIF 374
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
+ ++N + G G + ++ + LD FK G+ NI
Sbjct 375 ALYKKEATRVENTLTRR------------GYGVAAIHGDLSQQQRTKALDEFK-KGEKNI 421
Query 694 LIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
L+AT VA G+DI LVI + + I GR G L T + +
Sbjct 422 LLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHEKHLSG 481
Query 751 EQINMYK 757
IN+ +
Sbjct 482 ALINVLR 488
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ + A TG GKTF + H+ G+ +V+ + + Q +
Sbjct 159 LAGKDMVGVAETGSGKTFTFAVPALEHVLSTSGGKGVRVLVVSPTRELAMQIYDNIKELC 218
Query 315 ERHGYR-VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G V G E + ++ +I TP L + + +G+ LS + ++ DE
Sbjct 219 DVVGLHAVCVYGGVPKEQQRSD--LKRASFVIATPGRLCDLIDEGSCD-LSKVSYLVLDE 275
Query 374 C 374
Sbjct 276 A 276
>sp|Q1DQ20|IF4A_COCIM ATP-dependent RNA helicase eIF4A OS=Coccidioides
immitis (strain RS) OX=246410 GN=TIF1 PE=3 SV=1
Length=398
Score = 92.9 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 60/154 (39%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 DVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + I + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKL------------IARDFTVSAMHGEMEQNQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 59.4 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/173 (16%), Positives = 58/173 (34%), Gaps = 13/173 (8%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
+E P+ Q S NL + +P Q +P +KG + I
Sbjct 7 GLEEIPDNQIESNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVI 66
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A +G GKT + K + + + A + +Q + V +
Sbjct 67 AQAQSGTGKT--ATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVEC 124
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T ++ + + +++ TP + + +++ + + + DE
Sbjct 125 HACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQR-RVLKTDQMKMFVLDEA 176
>sp|Q6CT49|PRP28_KLULA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590
GN=PRP28 PE=3 SV=1
Length=539
Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/237 (19%), Positives = 89/237 (38%), Gaps = 29/237 (12%)
Query 556 EHARMKDALDYLKDFFSNVR--AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLED 613
E + + + F + A G+ + +T EE +++ + R +E KL
Sbjct 319 ETISNRQTMMFTATFSPTIEKVANGYLKKPSYVTVGGEESKPKIKQIVRYVPDEEEKL-- 376
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
IL +++ N + I+F+ + D L + + + + L G
Sbjct 377 --KILVKDFLPNYKAPIIIFINYKRTADWLFDKLRE----ARFRATTLHGS--------K 422
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGR 730
+ ++ L + +G +ILIAT VA GIDI +LV+ ++ + + GR
Sbjct 423 SQEQREHSLSLLR-NGKVDILIATDVAGRGIDIPNVSLVVNLQFPKSFDSFVHRVGRTGR 481
Query 731 GRARGSKCFLLTSNAGVIEKEQINMY-------KEKMMNDSILRLQTWDEAVFREKI 780
G+ LT ++ Y E ++ + D++ ++ I
Sbjct 482 AGKTGTALTFLTEEEDHSAMAKLFDYVKKNDFTGENYISKEAMSKYNVDKSSYKPII 538
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 11/149 (7%)
Query 235 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QG 288
TN +P + Q + ++ I A TG GKT LL L P +
Sbjct 153 TNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKH 212
Query 289 QKGKVVFFANQIPVYEQ-QKS--VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIII 345
+ A + +Q Q +K ++R V+ + G + E + + + DI++
Sbjct 213 DGPLALVLAPTRELAQQIQHEGQSITKLWKRPCNIVSIVGGHSLEEISAN-LRDGCDILV 271
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
TP L++ L + L ++ DE
Sbjct 272 ATPGRLLDCL-DSHLLFLKQVNTLVLDEA 299
>sp|A0A1D6LAB7|RH3B_MAIZE DEAD-box ATP-dependent RNA helicase
3B, chloroplastic OS=Zea mays OX=4577 GN=RH3B PE=2 SV=1
Length=743
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 20/171 (12%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
DL +EKL E + P K L ++ TI+F +T+ D +
Sbjct 296 DLVGDQDEKLAEGIKLYAIPLTTTSKRTVLSDLITVY---AKGGKTIVFTRTKKDADEVS 352
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ + + ++ ++ L+ F+ G +L+AT VA G+
Sbjct 353 LALTNSI-------------ASEALHGDISQHQRERTLNGFR-QGKFTVLVATDVAARGL 398
Query 705 DIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQ 752
DI +L+I YE + + GR G+ + TS+ K
Sbjct 399 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSSQKRTVKSL 449
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 21/190 (11%)
Query 198 EDLEDKMETSDIQIFYQEDPECQNLS-ENSCPPSEVSDTNLYSPFKPR------NYQLEL 250
ED E + + F + + + L+ P E L + + R Q +
Sbjct 64 EDGEGPYGSDADEGFEAGEGDNEELAIARLGLPDE-----LVATLEKRGITHLFPIQRAV 118
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHL------KKFPQGQKGKVVFFANQIPVYE 304
+PA++G++ I A TG GKT + L + +G+ +V+ A + +
Sbjct 119 LIPALEGRDLIARAKTGTGKTLAFGIPMIKQLIEQDDGRITRRGRTPRVLVLAPTRELAK 178
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q + + + G + G + NV + D+++ TP +++ L G L
Sbjct 179 QVEKEIKESAPKLGTVC--VYGGVSYNVQQNALSRGVDVVVGTPGRIID-LINGGSLQLG 235
Query 365 IFTLMIFDEC 374
++ DE
Sbjct 236 EVQYLVLDEA 245
>sp|Q6HPE6|CSHA_BACHK DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) OX=281309
GN=cshA PE=3 SV=1
Length=528
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 128/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSILRLQTW-DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|Q81VG0|CSHA_BACAN DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus anthracis OX=1392 GN=cshA PE=3 SV=1
Length=528
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 128/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSILRLQTW-DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|A0R8U6|CSHA_BACAH DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus thuringiensis (strain Al Hakam) OX=412694 GN=cshA
PE=3 SV=1
Length=528
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 128/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSILRLQTW-DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|Q64060|DDX4_RAT Probable ATP-dependent RNA helicase DDX4 OS=Rattus
norvegicus OX=10116 GN=Ddx4 PE=1 SV=1
Length=713
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 64/170 (38%), Gaps = 26/170 (15%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL+ P ++FV+T+ D + ++ T+
Sbjct 512 KKRKLVEILRNIGDERP----MVFVETKKKADFIATFLCQEK------------ISTTSI 555
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ L F+ G +L+ATSVA G+DI VI + + + + G
Sbjct 556 HGDREQREREQALGDFRC-GKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query 730 RGRARGSK----CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
R G+ F T + + + + K+++D+ + W E +
Sbjct 615 RTGRCGNTGRAISFFDTESDNHLAQPLV-----KVLSDAQQDVPAWLEEI 659
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 19/170 (11%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKP-RNYQLELALPAMKGKNTIICAPTGCGKT 271
++E CQ L+ N Y+ P + Y + + L G++ + CA TG GKT
Sbjct 275 FEEANLCQTLNNNIAKAG-------YTKLTPVQKYSIPIVLA---GRDLMACAQTGSGKT 324
Query 272 FVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
LL H+ +F + Q+ + + A + Q K+ R I
Sbjct 325 AAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVI 384
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G T + QIV+ +I+ TP L++ + K I L ++ DE
Sbjct 385 YGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIG-LKQVKYLVLDEA 433
>sp|A2QEN5|IF4A_ASPNC ATP-dependent RNA helicase eIF4A OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=tif1 PE=3 SV=1
Length=398
Score = 92.9 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPIRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQGQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 3/165 (2%)
Query 210 QIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCG 269
QI D + P + Y +P Q P + G + I A +G G
Sbjct 15 QIETNYDEVTDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTG 74
Query 270 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 329
KT + K + + + + A + +Q + V + G T
Sbjct 75 KT--ATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTN 132
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + +++ TP + + +++ + L I DE
Sbjct 133 VRDDMNALRAGPQVVVGTPGRIHDMIER-RVLKTDQMKLFILDEA 176
>sp|Q63GX5|CSHA_BACCZ DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus cereus (strain ZK / E33L) OX=288681 GN=cshA PE=3
SV=1
Length=528
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 128/366 (35%), Gaps = 47/366 (13%)
Query 479 MRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ T LA ++ ++L + + + +G Q + I ++K + I
Sbjct 76 IAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHI 135
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----------FFSNVRAAGFDEIE 583
+ LR N ++ + A + +++D + + +A +
Sbjct 136 NR------KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPI 189
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKT 636
+ + +RF + Q ++ +++ + N + L +L + + I+F +T
Sbjct 190 RRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRT 249
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ VD L + L G + +T + +L FK G +L+A
Sbjct 250 KRRVDELSEALN------------LRGYAAEGIHGDLTQAKRMSVLRKFK-EGSIEVLVA 296
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT-----SNAGVIEKE 751
T VA G+DI+ V ++ + + GR G K + + + E
Sbjct 297 TDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIE 356
Query 752 QINMYKEKMMNDSILRLQTW-DEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ K M+ L + + EK+ +E + + + + ++ ++
Sbjct 357 RTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEENDSVTVVA 416
Query 811 RKCKAL 816
K +
Sbjct 417 AALKMM 422
Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++GK+ I A TG GKT L + + +G + A + Q
Sbjct 29 QAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQG--IVIAPTRELAIQV 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + R+ I G N + + ++ II+ TP +++++ + T+ L
Sbjct 87 GEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTL-RLQNV 145
Query 367 TLMIFDEC 374
++ DE
Sbjct 146 ETVVLDEA 153
>sp|Q91372|DDX4_XENLA Probable ATP-dependent RNA helicase DDX4
OS=Xenopus laevis OX=8355 GN=ddx4 PE=2 SV=1
Length=700
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/169 (22%), Positives = 67/169 (40%), Gaps = 18/169 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
EN K+E L IL+ + + T++FV T+ D + ++
Sbjct 510 ENGKMEKLLEILKS----SEKERTMIFVNTKKKADFIAGYLCQEK------------FSS 553
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
T+ + ++ L F+ +G +++ T+VA G+DI VI Y+ V + +
Sbjct 554 TSIHGDREQYQRESALWDFR-TGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVH 612
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R TS V + I K++ D+ + W E +
Sbjct 613 RIGR-TGRCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEI 660
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQK 307
M G++ + CA TG GKT LL ++ ++ Q Q+ + + A + Q
Sbjct 309 MAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIY 368
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ R + G + + + +I+ TP L++ + K I LS
Sbjct 369 LDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIG-LSKLR 427
Query 368 LMIFDEC 374
++ DE
Sbjct 428 YLVLDEA 434
>sp|A6SBT4|DBP5_BOTFB ATP-dependent RNA helicase dbp5 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp5 PE=3 SV=1
Length=470
Score = 93.7 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/241 (20%), Positives = 78/241 (32%), Gaps = 35/241 (15%)
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFD---EIEQDLTQRFEEKLQELESVSRDPSNE 607
+ + R++ L + F V D + +R E + ++ + D NE
Sbjct 233 CMRVKSMIRVEQILLFSATFPDEVYGFAQDFSPRANEIKLKRDELTVSGIKQMFMDCPNE 292
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
K E IL + Y L +I+FVK R + + G
Sbjct 293 VGKYE----ILVKLYGLMTIGSSIIFVKRRDTASNIAERLTKE------------GHKVA 336
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE----------- 716
+ + +L+ F+ G +LI T+V GID+ ++VI Y+
Sbjct 337 AVHGAFEGSERDQVLEDFR-QGKAKVLITTNVLARGIDVQSVSMVINYDVPMKGRSDSDP 395
Query 717 YVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI-NMYKEKMMNDSILRLQTWDEAV 775
+ I GR G + QI N Y ++ L WDE
Sbjct 396 PPETYLHRIGRTGRFGRVGVSISFVFDRKSYDALNQIANHYNIDLIK---LNQDDWDETE 452
Query 776 F 776
Sbjct 453 E 453
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (43%), Gaps = 7/117 (6%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N I + +G GKT ++ L F + + + A + Q + V G
Sbjct 110 NMIAQSQSGTGKTAAFVITILSRL-DFSKPTTPQALCLAPSRELARQIEGVIRSI----G 164
Query 319 YRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V G++ A VE+ + N +++ TP +++ +K+ +I + S ++ DE
Sbjct 165 QFVDGLTVQAAIPGAVERNAKVNAMVVVGTPGTVMDLIKRRSIDA-SQMKILCLDEA 220
>sp|D0PV95|DDX3_CAEEL ATP-dependent RNA helicase laf-1 OS=Caenorhabditis
elegans OX=6239 GN=laf-1 PE=1 SV=1
Length=708
Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/156 (22%), Positives = 63/156 (40%), Gaps = 19/156 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K L +L ++T++FV+T+ L ++ ++T G
Sbjct 474 EEDEKRSYLMDLLD---ATGDSSLTLVFVETKRGASDLAYYLNRQ------NYEVVTIHG 524
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ ++ LD F+ +G IL+AT+VA G+DI VI Y+ +V + +
Sbjct 525 D------LKQFEREKHLDLFR-TGTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYV 577
Query 726 QTRGRGRARGS---KCFLLTSNAGVIEKEQINMYKE 758
GR G+ I +E +++ E
Sbjct 578 HRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVE 613
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 76/218 (35%), Gaps = 39/218 (18%)
Query 189 EKGIKDVETEDLEDKMETSDIQI-FYQEDPECQNLSENSCPPSEVSDTNLYS-------- 239
+G +D E + S I Y+E P + P S SD +L+
Sbjct 189 NRGARDERIEQELFSGQLSGINFDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKT 248
Query 240 -----PFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
P + Y + PA++G ++ + CA TG GKT L+ + + + +
Sbjct 249 AGYDRPTPVQKYSI----PALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRS 304
Query 294 V--------------FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
V + + Q + K+ R + G +QI +
Sbjct 305 VTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYG--GRENYKDQIHK 362
Query 340 ---NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I+I TP L++ + +G I + ++ DE
Sbjct 363 LRLGCHILIATPGRLIDVMDQGLIG-MEGCRYLVLDEA 399
>sp|Q5APT8|DBP3_CANAL ATP-dependent RNA helicase DBP3 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP3
PE=3 SV=1
Length=564
Score = 94.1 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/202 (19%), Positives = 81/202 (40%), Gaps = 26/202 (13%)
Query 561 KDALDYLKDFFSN-VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
K+ + +F ++ V+ D E +R + ++ + K + L +L+
Sbjct 340 KEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVINKF--------DKEKKLIQLLR 391
Query 620 EEY-HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ + + + ++F + ++N+++ N + + G ++ +
Sbjct 392 KYNANESSDNKILIFALYKKEASRIENFLKRN------RFSVAAIHGD------LSQQQR 439
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARG 735
L AFK SG N+L+AT VA G+DI +VI + + I GR A+G
Sbjct 440 TAALSAFK-SGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKG 498
Query 736 SKCFLLTSNAGVIEKEQINMYK 757
+ L T + + N+ +
Sbjct 499 TAHTLFTEDEKHLSGALCNILR 520
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (42%), Gaps = 2/120 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ I A TG GKTF + +++ + V+ + + Q +
Sbjct 188 LSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPTRELALQIYDNLIELT 247
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + G +++ + +I + ++++ TP LV+ + G I L ++ DE
Sbjct 248 ADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVDLINDGAIN-LGKVNYLVLDEA 305
>sp|Q2UPY3|IF4A_ASPOR ATP-dependent RNA helicase eIF4A OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=tif1
PE=3 SV=1
Length=421
Score = 92.9 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 237 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 292
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 293 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQSQRDVIMKEFR-SGSSR 339
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 340 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 373
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 59/169 (35%), Gaps = 5/169 (3%)
Query 206 TSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAP 265
T I+ Y E + P + Y +P Q P +KG + I A
Sbjct 36 TGQIETNYDEI--TDSFDAMELKPELLRGVYAYGFERPSAIQQRAIKPIIKGSDVIAQAQ 93
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS 325
+G GKT + K P + + + A + +Q + V +
Sbjct 94 SGTGKT--ATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNITCHACI 151
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G TA ++ + E ++++ TP + + +++ + I DE
Sbjct 152 GGTAVREDMKALGEGPEVVVGTPGRVHDMIQR-RVLKTDHLKQFILDEA 199
>sp|Q4WX43|IF4A_ASPFU ATP-dependent RNA helicase eIF4A OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC
A1100 / Af293) OX=330879 GN=tif1 PE=3 SV=1
Length=406
Score = 92.5 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQAQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 62.9 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 65/186 (35%), Gaps = 14/186 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+KG++++ I+ Y E + P + Y +P Q
Sbjct 5 DKGLEEIP---------EGQIESNYDEI--TDSFDAMDLKPELLRGVYAYGFERPSAIQQ 53
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
LP +KG + I A +G GKT + K P + + + A + +Q +
Sbjct 54 RAILPIIKGNDVIAQAQSGTGKT--ATFSISALQKLDPNVKGCQALILAPTRELAQQIQK 111
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V + G T ++ + E +++ TP + + +++ + +
Sbjct 112 VVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQR-RVLRTDNLKM 170
Query 369 MIFDEC 374
I DE
Sbjct 171 FILDEA 176
>sp|A5DLE0|DBP8_PICGU ATP-dependent RNA helicase DBP8 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP8 PE=3
SV=2
Length=433
Score = 92.9 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 41/251 (16%)
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
F + + I LT + ++ +PK E
Sbjct 210 FIHEIVSKDQVAIPATLTISYVFVPSYVKEAYLHNILVSPKYEK--------------AS 255
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
I+FV + L+ + ++ L ++ M + L F+A G
Sbjct 256 AIVFVNRTYTAEILRRTLRKLD----IRVASL--------HSEMPQSERTNSLHRFRA-G 302
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNA- 745
+LIAT VA G+DI LV+ + + I G R +G +++
Sbjct 303 AARVLIATDVASRGLDIPNVELVVNQDIPADPDDYIHRVGRTARAGKKGGSVSIVSEKDV 362
Query 746 ------GVIEKEQINMYKE----KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQE 795
+++++ +E K++ +S+ + + ++ I +
Sbjct 363 ERILAIENHINKKMDLLEEVNDDKIIKESLSIVTAAKRESVADMEKEGFGEKRKINKRKR 422
Query 796 KPKPVPDKENK 806
+ + K+ K
Sbjct 423 EERTRDSKKRK 433
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 44/131 (34%), Gaps = 5/131 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E + G++ I A TG GKT + P G G V + Q
Sbjct 28 QAECIPQILAGRDCIGGAKTGSGKTIAFAAPMMTKWSEDPFGIYGLV--LTPTRELALQI 85
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSL 363
F +V + G +I ++ II TP L +++ T+ L
Sbjct 86 AEQFLALGASMNIKVAVVVGGEDMVKQALEIQKSPHFIIATPGRLADHILNSGDDTVGGL 145
Query 364 SIFTLMIFDEC 374
++ DE
Sbjct 146 KRIKFLVLDEA 156
>sp|A1CJT5|IF4A_ASPCL ATP-dependent RNA helicase eIF4A OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=tif1 PE=3 SV=1
Length=398
Score = 92.5 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQSQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 63.6 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/186 (17%), Positives = 65/186 (35%), Gaps = 14/186 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+KG++++ I+ Y E + P + Y +P Q
Sbjct 5 DKGLEEIP---------EGQIESNYDEI--TDSFDSMDLKPELLRGIYAYGFERPSAIQQ 53
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
+P +KG + I A +G GKT + K P + + + A + +Q +
Sbjct 54 RAIMPIIKGSDVIAQAQSGTGKT--ATFSISALQKIDPNLKACQALILAPTRELAQQIQK 111
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V + G T ++ + + +++ TP + + +++ + L
Sbjct 112 VVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQR-RVLRTDQMKL 170
Query 369 MIFDEC 374
I DE
Sbjct 171 FILDEA 176
>sp|Q465R3|HELS_METBF ATP-dependent DNA helicase Hel308 OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) OX=269797 GN=hel308
PE=3 SV=1
Length=729
Score = 94.5 bits (233), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + +G+N + PT GKT ++ L + GK ++ + +
Sbjct 28 QAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSIL-----AGGKALYIVPLRALASE 82
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F + F G RV +G ++ + NDII+ T + + L+ T+ +
Sbjct 83 KFRRFRE-FSELGIRVGISTGDY---DLRDEGLGVNDIIVATSEKTDSLLRNETVW-MQE 137
Query 366 FTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
++++ DE H ++ + P + L + P Q++ L+A+VG D
Sbjct 138 ISVVVADEVHLIDSPDRGPTLEVTLAKLRKM-----NPSCQILALSATVGNAD 185
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 13/110 (12%)
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
AL +E + + + G + G+T P ++ + D F+A G ++
Sbjct 275 DRNALAGIADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRA-GRIKLI 333
Query 695 IATSVADEGIDIAQCNLVIL-YEYVGN-----------VIKMIQTRGRGR 732
+T G+++ ++I Y + +M GR R
Sbjct 334 SSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPR 383
>sp|Q1E1N5|RRP3_COCIM ATP-dependent rRNA helicase RRP3 OS=Coccidioides
immitis (strain RS) OX=246410 GN=RRP3 PE=3 SV=1
Length=474
Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/191 (21%), Positives = 74/191 (39%), Gaps = 21/191 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E P I+F +T L + G G
Sbjct 275 KDIYLIYLLNEF----PGQSVIIFTRTVNETQRLAILLRA------------LGFGAIPL 318
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ A+ L F++ NIL+AT VA G+DI +LV+ Y+ + I G
Sbjct 319 HGQLSQSARLGALGKFRSRSR-NILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVG 377
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA + + F L + V ++I K +++ +++ + V +++ Q H
Sbjct 378 RTARAGKSGRAFSLVTQYDVEIWQRIEAALGKELDE--YKVEKEEVMVLSDRVGEAQRHA 435
Query 788 KFIRDSQEKPK 798
+ +
Sbjct 436 ITEMKELHENR 446
Score = 77.1 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/191 (24%), Positives = 62/191 (32%), Gaps = 13/191 (7%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCP---------PSEVSDTNLYSPFKP 243
E ED ETS + QE P E + S + P
Sbjct 14 PQGEAEDGFSDSETSQASL--QETPGNDEKIEATTTKSFKDLGIIDSLCEACDSLGYKAP 71
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q E A++G++ I A TG GKT L L PQ G V A +
Sbjct 72 TQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPQSMFGLV--LAPTRELA 129
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q F R I G + + II+ TP L+++L+ SL
Sbjct 130 YQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSL 189
Query 364 SIFTLMIFDEC 374
++ DE
Sbjct 190 RSLKYLVMDEA 200
>sp|Q6CCZ1|PRP5_YARLI Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
OX=284591 GN=PRP5 PE=3 SV=1
Length=974
Score = 94.9 bits (234), Expect = 2e-18, Method: Composition-based stats.
Identities = 68/451 (15%), Positives = 146/451 (32%), Gaps = 72/451 (16%)
Query 432 ASLDASVIATVKHNL-----EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLA 486
+S VI T L +L + + V + K IA L + T +
Sbjct 457 SSHPLGVIITPTRELCVQIYRDLRPFLAALELT--AVCAYGGSPIKDQIAALKKGTHIIV 514
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+ ++ L+ Q R + + + +A +F M + + ++ +++
Sbjct 515 CTPGRMIDLLAANQGRVLSLSRVT--FLVIDEADRMFDMGFEPQVLKLTQSIRP------ 566
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
D + A ++ L + R++ + + E+ N
Sbjct 567 ---DRQTVLFSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQN 623
Query 607 ENPKLEDLCFILQEEYHLN--------------------PETITILFVKTRALVDALKNW 646
E K L +L + + P ++FV+ + D+L
Sbjct 624 EKSKFPRLLEVLGKYFAQGFFDEQSEGRVGTGESAATPIPNPKCLIFVERQESADSLLKE 683
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ I +G + + G + + FK SG ++LIATSVA G+D+
Sbjct 684 L------------IQSGYPCLSIHGGKEQADRDQAISDFK-SGLVSVLIATSVAARGLDV 730
Query 707 AQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE----- 758
LV+ ++ + + + GR +G+ L S+ + E K
Sbjct 731 KGLGLVVNWDSPNHMEDYVHRVGRTGRAGQKGTALTFLLSDQERLAAEISRAIKSSGNAP 790
Query 759 ----KMMNDS-ILRLQTWDEAV-----FREKILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
++M + ++++ E + + +Q R+ + + + +
Sbjct 791 PAPVQLMTERFEFKVRSGTEKRHMYGFSGKGLERLQDERDATREHERRAYEGDEAGEAET 850
Query 809 LCRKCKALACYTADVRVIEECHYTVLGDAFK 839
A TA+ +I + V K
Sbjct 851 ES---STPAASTANTDIIPKPVIVVTPPDSK 878
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/305 (19%), Positives = 99/305 (32%), Gaps = 38/305 (12%)
Query 195 VETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
E E E ++ I+I ++ P ++ P + N KP + Q +
Sbjct 352 TEAETNELRLSLDGIKIRGKDCPKPISKWTQLGLPGPTMGVLNDLRYDKPTSIQAQAIPA 411
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----------VFFANQIPV 302
M G++ I A TG GKT LL H+K + V +
Sbjct 412 VMSGRDVISVAKTGSGKTLAFLLPMLRHIKHRVGVETHTTTLSGASSHPLGVIITPTREL 471
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q + G + + + + II+ TP +++ L +G +
Sbjct 472 CVQIYRDLRPFLAALELTAVCAYGGSPIKDQIAALKKGTHIIVCTPGRMIDLLAANQGRV 531
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
SLS T ++ DE MF+ + PQV+ LT S+
Sbjct 532 LSLSRVTFLVIDEADR----------MFDMGFE---------PQVLKLTQSIRPDRQTVL 572
Query 421 DEA-----LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
A ++ + + S +S + VV F +V KF ++
Sbjct 573 FSATFPKKMEQLARRVLSKRSSDSLGPIEIIVGARSVVASEITQFVEVFQNEKSKFPRLL 632
Query 476 AQLMR 480
L +
Sbjct 633 EVLGK 637
>sp|Q5B948|IF4A_EMENI ATP-dependent RNA helicase eIF4A OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) OX=227321 GN=tif1 PE=3 SV=2
Length=398
Score = 92.2 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQAQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 3/170 (2%)
Query 205 ETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICA 264
E D QI D + P + Y +P Q LP +KG + I A
Sbjct 10 EIPDSQIESNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQA 69
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
+G GKT + K P + + + A + +Q + V + +
Sbjct 70 QSGTGKT--ATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHAC 127
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G TA + + E I++ TP + + +++ + + I DE
Sbjct 128 IGGTAVRDDMNALREGPQIVVGTPGRIHDMIQR-RVLKTDQMKMFILDEA 176
>sp|Q8PZR7|HELS_METMA ATP-dependent DNA helicase Hel308 OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1
/ JCM 11833 / OCM 88) OX=192952 GN=hel308 PE=3 SV=1
Length=730
Score = 94.5 bits (233), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + +GKN + PT GKT ++ L + GK ++ + +
Sbjct 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVL-----NGGKALYIVPLRALASE 82
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F + F G RV +G ++ + NDII+ T + + L+ T +
Sbjct 83 KFRRF-QEFSVLGMRVGISTGDY---DRRDEGLGINDIIVATSEKTDSLLRNET-AWMQE 137
Query 366 FTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
++++ DE H ++ + P I + L + P QV+ L+A+VG D
Sbjct 138 ISVVVADEVHLIDSPDRGPTLEITLSKLRRM-----NPSCQVLALSATVGNAD 185
>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP5
PE=3 SV=1
Length=1197
Score = 94.9 bits (234), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 58/158 (37%), Gaps = 18/158 (11%)
Query 607 ENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
EN K L +L Y N + ++FV + D L + G
Sbjct 789 ENTKFVRLLELLGNLYSDDNNEDARALIFVDRQEAADGLLRDLMRK------------GY 836
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ + G + +D FKA G +LIATSVA G+D+ Q LVI Y+ ++
Sbjct 837 PCMSIHGGKDQVDRDSTIDDFKA-GIFPVLIATSVAARGLDVKQLKLVINYDAPNHLEDY 895
Query 725 IQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+ LT + K+
Sbjct 896 VHRAGRTGRAGNTGTAVTFLTEEQERYSVDIAKALKQS 933
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 51/138 (37%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
+P + Q + M G++ I A TG GKT LL H+K + +
Sbjct 581 QPTSIQSQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEGPVGLIMTP 640
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q + + R G + ++ +II+ TP +++ L
Sbjct 641 TRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAAN 700
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 701 SGRVTNLRRVTYVVLDEA 718
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein
DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1
Length=607
Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 39/269 (14%)
Query 492 DLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
L ++ +++ G Y + + +A + M + + +I K + + L
Sbjct 277 RLNDILEMRRVSLGQVSY----LVLDEADRMLDMGFEPQIRKIVKEVPVQRQTLMYTA-- 330
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ R A + N+ + +TQ E L K
Sbjct 331 -TWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPM------------EKQ 377
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ IL+ P + I+F T+ + D L + N G +
Sbjct 378 RRVEQILR---SKEPGSKIIIFCSTKKMCDQLSRNLTRN-------------FGAAAIHG 421
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + +L F+A G +L+AT VA G+DI +VI Y++ + + I
Sbjct 422 DKSQGERDYVLSQFRA-GRSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT 480
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR A G + + + + +
Sbjct 481 GRAGASGLAYTFFSDQDSKHALDLVKVLE 509
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/124 (21%), Positives = 54/124 (44%), Gaps = 5/124 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKVVFFANQIPVYEQ-QKSVF 310
A++G++ + A TG GKT L+ HL++ + ++ + + Q Q
Sbjct 179 ALQGRDIVAIAKTGSGKTLGYLMPAFIHLQQRRKNPQLGPTILVLSPTRELATQIQAEAV 238
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
K+ + T + G + + ++ DI++ TP L + L+ + SL + ++
Sbjct 239 -KFGKSSRISCTCLYGGAPKGPQLRELSRGVDIVVATPGRLNDILEMRRV-SLGQVSYLV 296
Query 371 FDEC 374
DE
Sbjct 297 LDEA 300
>sp|A1D7N3|IF4A_NEOFI ATP-dependent RNA helicase eIF4A OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=tif1
PE=3 SV=1
Length=398
Score = 92.2 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + L ++ E L+ ++ E KL+ L + Y T ++
Sbjct 214 EVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTL----SDLYETVTITQAVI 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + + + + M + I+ F+ SG
Sbjct 270 FCNTRRKVDWLTDKLTAR------------DFTVSAMHGDMEQAQRDVIMKEFR-SGSSR 316
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+LIAT + GID+ Q +LVI Y+ N I
Sbjct 317 VLIATDLLARGIDVQQVSLVINYDLPANRENYIH 350
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/139 (19%), Positives = 51/139 (37%), Gaps = 3/139 (2%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y +P Q LP +KG + I A +G GKT + K P + + +
Sbjct 41 YAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKT--ATFSISALQKLDPNVKGCQALI 98
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + V + G T ++ + E +++ TP + + +
Sbjct 99 LAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMI 158
Query 356 KKGTIPSLSIFTLMIFDEC 374
++ + + I DE
Sbjct 159 QR-RVLRTDNLKMFILDEA 176
>sp|A6UN73|HELS_METVS ATP-dependent DNA helicase Hel308 OS=Methanococcus
vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029
/ OCM 148 / SB) OX=406327 GN=hel308 PE=3 SV=1
Length=751
Score = 94.5 bits (233), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/178 (22%), Positives = 72/178 (40%), Gaps = 17/178 (10%)
Query 242 KPRNYQLELALPAM--KGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKVVFFAN 298
+ R Q ++ + K KN +IC PT GKT + + +H L + K +F
Sbjct 15 ELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVP 74
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ ++ F K +E +G +V G ++ + +III T + L + ++
Sbjct 75 LKALASEKFDEFQKKYETYGIKVGMSIGD----YDTKEDLSKYNIIITTSEKLDSLMRH- 129
Query 359 TIPSLSIFTLMIFDECHNTSKQ--HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
I + +L + DE H ++ L Q++GL+A+VG
Sbjct 130 NIEWIKDLSLAVIDEIHLIGDNERGGTLEVI-------LTKLKNINAQIVGLSATVGN 180
>sp|A7TK63|DBP8_VANPO ATP-dependent RNA helicase DBP8 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP8 PE=3 SV=1
Length=431
Score = 92.2 bits (227), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 17/159 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L ++ I+FV + L+ + ++ L
Sbjct 236 EHVKEAYLYQLL--TCEDYKDSSVIVFVNRTTAAEVLRRTLRSLE----VRVASL----- 284
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++ M + L F+A+ +LIAT VA G+DI LVI Y+ + I
Sbjct 285 ---HSQMPQSERINSLQRFRAN-AARVLIATDVAARGLDIPTVELVINYDIPQDPDTFIH 340
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR RA R + V E I K M++
Sbjct 341 RSGRTARAGRSGDAISFVTPRDVSRIEAIEERINKKMDE 379
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 44/131 (34%), Gaps = 5/131 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q +KG++ I A TG GKT P G G V + Q
Sbjct 29 QKHCIPEILKGRDCIGGAKTGSGKTIAFAGPMLSQWSDDPSGMFG--VVLTPTRELAIQI 86
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSL 363
F+ RV + G + ++ + II TP L +++ + L
Sbjct 87 AEQFTALGSSMNIRVCLVVGGESIVKQALELQKKPHFIIATPGRLAHHILSSGEEVVGGL 146
Query 364 SIFTLMIFDEC 374
S ++ DE
Sbjct 147 SRVKYLVLDEA 157
>sp|P0CQ86|DBP5_CRYNJ ATP-dependent RNA helicase DBP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP5 PE=3 SV=1
Length=546
Score = 93.3 bits (230), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/215 (19%), Positives = 73/215 (34%), Gaps = 28/215 (13%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E + ++ + + + + + +E+ K E L Y +I+F K +
Sbjct 346 EANKIFLRKEDITVDAIRQLYLECDSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTA 401
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
D + + G + + + ILD F+ +G+ +LI T+V
Sbjct 402 DHIAERLISE------------GHAVASLHGDKLSQERDAILDGFR-NGETKVLITTNVI 448
Query 701 DEGIDIAQCNLVILYEYVG-----------NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
GIDI N+V+ Y+ I I GR +G +
Sbjct 449 ARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRSKSD 508
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
E+I K M R T E + + L ++
Sbjct 509 VERIMNTLGKPMKKIDARSTTDIEQLEKALKLAMK 543
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 9/119 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER- 316
+N I + +G GKT + + P + + A + Q + V + +
Sbjct 188 RNLIGQSQSGTGKT--AAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVIDQIGQFT 245
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDEC 374
I G+ + N ++ I+I TP LV+ L +G+ I + +++ DE
Sbjct 246 QVGTFLAIPGSWSRNSRID-----KQILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEA 299
>sp|P0CQ87|DBP5_CRYNB ATP-dependent RNA helicase DBP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP5 PE=3 SV=1
Length=546
Score = 93.3 bits (230), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/215 (19%), Positives = 73/215 (34%), Gaps = 28/215 (13%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E + ++ + + + + + +E+ K E L Y +I+F K +
Sbjct 346 EANKIFLRKEDITVDAIRQLYLECDSEDQKYEAL----SALYDCLVIGQSIVFCKRKVTA 401
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
D + + G + + + ILD F+ +G+ +LI T+V
Sbjct 402 DHIAERLISE------------GHAVASLHGDKLSQERDAILDGFR-NGETKVLITTNVI 448
Query 701 DEGIDIAQCNLVILYEYVG-----------NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
GIDI N+V+ Y+ I I GR +G +
Sbjct 449 ARGIDIPAVNMVVNYDVPDLGPGGNGPDIETYIHRIGRTGRFGRKGCSVIFTHDYRSKSD 508
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
E+I K M R T E + + L ++
Sbjct 509 VERIMNTLGKPMKKIDARSTTDIEQLEKALKLAMK 543
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 9/119 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER- 316
+N I + +G GKT + + P + + A + Q + V + +
Sbjct 188 RNLIGQSQSGTGKT--AAFTLNMLSRVDPTIPTPQAICIAPSRELARQIQEVVDQIGQFT 245
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDEC 374
I G+ + N ++ I+I TP LV+ L +G+ I + +++ DE
Sbjct 246 QVGTFLAIPGSWSRNSRID-----KQILIGTPGTLVDMLMRGSRILDPRMIRVLVLDEA 299
>sp|Q2H1Q8|RRP3_CHAGB ATP-dependent rRNA helicase RRP3 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=RRP3 PE=3 SV=1
Length=493
Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/349 (19%), Positives = 118/349 (34%), Gaps = 47/349 (13%)
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQ 517
+ + DK + + A ++ T LA +I + E L + + G Q + +
Sbjct 122 PILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGGLDMVQQAIALG 181
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRA 576
K V + K +LR D LD + F R
Sbjct 182 KKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMDEADRLLDMDFGPILDKILKFLPRERR 241
Query 577 AGFDEIEQDLTQRFEEKLQELE-SVSRDP---SNENPKLEDLCFILQEEY---HLNPETI 629
+ K++ L+ + RDP S + K + + ++Q H + +T
Sbjct 242 TFL------FSATMSSKVESLQRACLRDPLKVSISSSKYQTVSTLVQNYVFIPHTHKDTY 295
Query 630 ------------TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
I+F +T + + G G + G++ A
Sbjct 296 LIYLCNEFAGQTIIIFTRTVIETQRIAILLRT------------LGMGAIPLHGGLSQSA 343
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RG 735
+ L+ F+A G +IL+AT VA G+DI + V+ + G+ + GR RA R
Sbjct 344 RLGALNKFRA-GSRDILVATDVAARGLDIPNVDCVLNLDLPGDSKTYVHRVGRTARAGRS 402
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
+ + +I + + L+ D VFR ++ Q
Sbjct 403 GHAISFVTQYDLELWLRIEAALGTKLTE--YSLEKDDVMVFRPRVEEAQ 449
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/182 (20%), Positives = 56/182 (31%), Gaps = 2/182 (1%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
+ D E+P + + S KP Q E
Sbjct 38 PSAVPNSEAESETIDDASGEESEEPAPKTFQDLGIVDSLCDACKELGWKKPTPIQQESIP 97
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
A++ ++ I A TG GKT L L PQ V A + Q F
Sbjct 98 LALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALV--LAPTRELAAQIAQSFEA 155
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
R I G + + +++ TP L+++L+K SL ++ D
Sbjct 156 LGSLISLRCALILGGLDMVQQAIALGKKPHVVVATPGRLLDHLEKTKGFSLRNLRYLVMD 215
Query 373 EC 374
E
Sbjct 216 EA 217
>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0911100 PE=2
SV=2
Length=666
Score = 93.7 bits (231), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 65/191 (34%), Gaps = 19/191 (10%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
++ + + + K + +E+ K L +L + +
Sbjct 443 VESLARQFLQNPYKVIIGSPDLKANHSIQQIIEVISEHEKYPRLSKLLSDLMD---GSRI 499
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
++F +T+ D + + + G + + + +L FK SG
Sbjct 500 LIFFQTKKDCDKVTRQLR------------MDGWPALSIHGDKAQAERDYVLAEFK-SGK 546
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
I+ AT VA G+D+ VI +++ I I GR A G+ T +
Sbjct 547 SPIMAATDVAARGLDVKDIKCVINFDFPTTLEDYIHRIGRTGRAGASGTAFTFFTLSNAK 606
Query 748 IEKEQINMYKE 758
+ + + +E
Sbjct 607 FSRNLVKILRE 617
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 54/124 (44%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVF 310
A+KG++ I A TG GKT LL H+ P QG V+ A + Q +
Sbjct 285 ALKGRDMIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQIQQES 344
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
K+ R T I G + + + +I+I TP L++ L +G +L T ++
Sbjct 345 GKFGSYSRTRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDML-EGGHTNLRRVTYLV 403
Query 371 FDEC 374
DE
Sbjct 404 LDEA 407
>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Meyerozyma guilliermondii (strain ATCC 6260 /
CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746
GN=PRP28 PE=3 SV=2
Length=575
Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 23/246 (9%)
Query 514 VTVQKACMVFQMPDKDEESRICKAL-------FLYTSHLRKYNDALIISEHARMKDALDY 566
+T+ +A + M + I L F S + K + + A + ++
Sbjct 310 LTMDEADRMIDMGFEKALQSILSFLPSTSSSGFGLDSTIFKVKSRITLMFTATISPPIEK 369
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN-PKLEDLCFILQEEYHLN 625
+ + A + ++ +K + L N P+ + L++
Sbjct 370 ITKDYLQTPAYLYIGDAGEIVDNINQKFEYLGDNVDSQEELNAPRTNKMISALRQHIRET 429
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ + I+F + + L + S + G + A++ + +F
Sbjct 430 EQPLIIIFANFKRTCELLSVELSNQNVGSNI-----VIHGSKS------QEARESAIASF 478
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLT 742
+ N+LIAT VA GIDI +LV+ Y I I GR G+ +
Sbjct 479 REH-KVNVLIATDVAARGIDIPNVSLVVNYHMPKRFDEYIHRIGRTGRAGKSGASLSFVD 537
Query 743 SNAGVI 748
I
Sbjct 538 DGDSEI 543
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 81/468 (17%), Positives = 156/468 (33%), Gaps = 37/468 (8%)
Query 172 KLALEKERNKF---SELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCP 228
+A N F E W +K ++D+ + D E I P + S
Sbjct 99 MMAYPTSNNDFLPAEEHWS-DKKLEDMTSRDWRIFKEDFSITCKGNNIPNPLRSWKESGI 157
Query 229 PSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL----- 282
P+ + +T + +P Q A+ ++ + A TG GKT L+ +L
Sbjct 158 PTTLLNTIDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDK 217
Query 283 -----KKFPQGQKGKVV--FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE 335
+ + KV+ A + Q K+ GY V I G V+
Sbjct 218 DYMEVEHKQESNLNKVLGLVLAPTRELALQISKEAKKFASVLGYNVVTIIGGHQYEETVK 277
Query 336 QIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS--KQHPYNMIMFNYLDQ 393
+ + I++ TP L+++ +KG I + L DE + ++L
Sbjct 278 SVQDGAHIVVATPGRLIDSAEKGLIDLSQCYHLT-MDEADRMIDMGFEKALQSILSFLPS 336
Query 394 KLGGSSGPLPQVIGL--------TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN 445
G + + TA++ K T + L L ++ +
Sbjct 337 TSSSGFGLDSTIFKVKSRITLMFTATISPPIEKITKDYLQTPAYLYIGDAGEIVDNINQK 396
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
E L V ++ + + ++K + Q +R+TE I + + ++ + E
Sbjct 397 FEYLGDNVDSQEE----LNAPRTNKMISALRQHIRETEQPLIIIFANFKRTCELLSVELS 452
Query 506 TQKYEQWIV----TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
Q IV Q+A ++ + + A + + N +L+++ + K
Sbjct 453 NQNVGSNIVIHGSKSQEARESAIASFREHKVNVLIATDVAARGIDIPNVSLVVN-YHMPK 511
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP 609
+Y+ RA + E L L+S + P
Sbjct 512 RFDEYIHRIGRTGRAGKSGASLSFVDDGDSEILVNLKSFLSKGTKRLP 559
>sp|O60072|SLH1_SCHPO RQC trigger complex helicase slh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=slh1
PE=1 SV=1
Length=1935
Score = 94.1 bits (232), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 67/173 (39%), Gaps = 23/173 (13%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--------------QKGKVVFFANQIPV 302
+N +ICAPTG GKT V+LL + + + K+V+ A +
Sbjct 293 NENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKAL 352
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI--LVNNLKKGTI 360
+ K G + ++G + + I++ TP+ +V G
Sbjct 353 AAEVVEKMGKRLAWLGLKTRELTGDMQ---LTKTEIAETQILVTTPEKWDVVTRKSVGDT 409
Query 361 PSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
L+I DE H + + ++ Q+L +S + +++GL+A+
Sbjct 410 QLAEKVRLVIIDEVHMLHDERGAVIESLVAR--TQRLVETSQQMIRIVGLSAT 460
Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats.
Identities = 50/232 (22%), Positives = 86/232 (37%), Gaps = 19/232 (8%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK------GKNTIICAPT 266
+P + L P + + D L R N + APT
Sbjct 1100 DDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPT 1159
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF-ERHGYRVTGIS 325
G GKT + L L +P K KVV+ A + +++ + E G + ++
Sbjct 1160 GSGKTMAAELATWRALHNYP---KSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELT 1216
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL--SIFTLMIFDECH-NTSKQHP 382
G T +V + V N +III TP+ + + + +L+I DE H S + P
Sbjct 1217 GDTNPDV---KAVTNANIIITTPEKW-DGITRSWKSRKYVQDVSLIILDEIHLLGSDRGP 1272
Query 383 YNMIMFNYLDQKLGGSSGPLPQVIGL-TASVGVGDAKNTDEALDYICKLCAS 433
++ + ++ + + +V+GL TA D N D + S
Sbjct 1273 VLEMIVSRMN-YVASQTNKKVRVLGLSTAVANANDLANWLNIRDGLFNFRHS 1323
>sp|Q8TL39|HELS_METAC ATP-dependent DNA helicase Hel308 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM
12185 / C2A) OX=188937 GN=hel308 PE=3 SV=1
Length=730
Score = 93.3 bits (230), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + +GKN + PT GKT ++ L + GK ++ + +
Sbjct 28 QAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVL-----AGGKALYIVPLRALASE 82
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F + F G RV +G ++ + NDII+ T + + L+ T +
Sbjct 83 KFRRF-QDFSELGIRVGISTGDY---DRRDEGLGINDIIVATSEKTDSLLRNET-AWMQE 137
Query 366 FTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
++++ DE H +++ + P + L + P Q++ L+A+VG D
Sbjct 138 ISVVVVDEVHLIDSADRGPTLEVTLAKLRKM-----NPFCQILALSATVGNAD 185
>sp|P09052|VASA1_DROME ATP-dependent RNA helicase vasa OS=Drosophila
melanogaster OX=7227 GN=vas PE=1 SV=3
Length=661
Score = 92.9 bits (229), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 57/152 (38%), Gaps = 22/152 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL E+ TI+FV+T+ D L +++ T+
Sbjct 477 KRSKLIEILSEQADG-----TIVFVETKRGADFLASFLSEKE------------FPTTSI 519
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ L FK +G +LIATSVA G+DI VI Y+ + + G
Sbjct 520 HGDRLQSQREQALRDFK-NGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIG 578
Query 730 RGRARG----SKCFLLTSNAGVIEKEQINMYK 757
R G + F I + + + +
Sbjct 579 RTGRVGNNGRATSFFDPEKDRAIAADLVKILE 610
Score = 63.6 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK---GKVVFFANQIPVYEQQKSVFSKY 313
G++ + CA TG GKT LL L + P + +VV + + Q + K+
Sbjct 282 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 341
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
++ + G T+ E I ++I TP L++ + + I ++ DE
Sbjct 342 AFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT-FEDTRFVVLDE 400
Query 374 C 374
Sbjct 401 A 401
>sp|Q6C799|DBP8_YARLI ATP-dependent RNA helicase DBP8 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP8 PE=3
SV=1
Length=442
Score = 91.8 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 49/142 (35%), Gaps = 15/142 (11%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
N + I+FV + L+ + + + ++ M + L
Sbjct 246 DNEKKSAIIFVNRTQTAETLRRML------------MALDVKTASLHSEMRQQERVNALG 293
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLL 741
F+A +L+AT VA G+DI +VI ++ + I GR RA R + L
Sbjct 294 RFRAQ-AARVLVATDVASRGLDIPTVEMVINFDLPADADDYIHRVGRTARAGRKGQSVSL 352
Query 742 TSNAGVIEKEQINMYKEKMMND 763
+ V I M
Sbjct 353 VTERDVTRVTNIEERVGTKMEK 374
Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 43/123 (35%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
MKGK+ I A TG GKT K P G G V + Q F+
Sbjct 36 MKGKDCIGGARTGSGKTIAFAAPMLAEWSKDPCGIFGLV--LTPTRELAIQIAEQFTALG 93
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIF 371
RV I G ++ + +I TP L ++++ TI ++
Sbjct 94 ANMNIRVALIYGGVDMVKQSLELQKMPHFVIATPGRLADHIRSSGEDTIRGFRRVRYVVM 153
Query 372 DEC 374
DE
Sbjct 154 DEA 156
>sp|Q6BGU8|DBP8_DEBHA ATP-dependent RNA helicase DBP8 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP8 PE=3 SV=2
Length=441
Score = 91.8 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/272 (19%), Positives = 100/272 (37%), Gaps = 31/272 (11%)
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
I + L + VRA + + F +++ ++ V+ PS
Sbjct 167 DLERCFNILPSTDKRQTLLFTATVTDAVRALKDRPVPKGKLPVFIHEVETVDKVAI-PST 225
Query 607 ENPKLEDLCFILQEEYHLN-------PETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ K + ++E Y + ++++I+F A + L+ + KL F
Sbjct 226 LSVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTATAELLRRTLR---KLEFRVAS 282
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ ++ M + L FKA G ILIAT VA G+DI LV+ Y+
Sbjct 283 L---------HSEMPQTERTNSLHRFKA-GAAKILIATDVASRGLDIPTVELVVNYDIPA 332
Query 720 NVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 777
+ I GR RA R + + V ++I +E++ L D V +
Sbjct 333 DADDFIHRVGRTARAGRKGDAISIVAEKDV---DRILAIEERINKKMDLIEDISDNKVIK 389
Query 778 EKILHIQTHEK-----FIRDSQEKPKPVPDKE 804
+ + ++ R++ + + + +
Sbjct 390 DSLNKTSVAKREAFMDMDRENFGEKRKINKSK 421
Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/366 (15%), Positives = 114/366 (31%), Gaps = 33/366 (9%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+KG + I A TG GKT + P G G V + Q F+
Sbjct 36 LKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLV--LTPTRELALQIAEQFAALG 93
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIF 371
+V+ I G ++ ++ TP L +++ T+ L +I
Sbjct 94 SSMNIKVSVIVGGEDIVKQALELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLIL 153
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-----QVIGLTASVGVGDAKNTDEALDY 426
DE + ++ N L LP Q + TA+V D +
Sbjct 154 DEA---------DRLLSNSFGGDLERCFNILPSTDKRQTLLFTATVTDAVRALKDRPVPK 204
Query 427 ------ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
I ++ ++ +T+ + V + + SD I
Sbjct 205 GKLPVFIHEVETVDKVAIPSTLSVKYVFVPSYVKEAYLHSILNLPQYSDSLSIIFTNRTA 264
Query 481 DTESLAKRICKDLENLSQIQNREFGTQK---YEQWIVTVQKACMVFQMPDKDEESRICKA 537
E L + + K ++ + + T++ ++ K + + + + +
Sbjct 265 TAELLRRTLRKLEFRVASLHSEMPQTERTNSLHRFKAGAAKILIATDVASRGLDIPTVEL 324
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
+ Y + + AR D + + A + + +R +K+ +
Sbjct 325 VVNYDIPADADDFIHRVGRTARAGRKGDAIS-----IVAEKDVDRILAIEERINKKMDLI 379
Query 598 ESVSRD 603
E +S +
Sbjct 380 EDISDN 385
>sp|Q4P3U9|RRP3_USTMA ATP-dependent rRNA helicase RRP3 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=RRP3 PE=3
SV=2
Length=561
Score = 92.5 bits (228), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/189 (23%), Positives = 69/189 (37%), Gaps = 21/189 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L + E+ + I+F +T L + L G
Sbjct 340 KDTYLVHLANEQAGHS----IIVFTRTVHDSQRLSILLR------------LLGFPAIPL 383
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ A+ L+ FK G IL+AT VA G+DI +LV+ Y+ N I G
Sbjct 384 HGQLSQQARLGALNKFKTGGRS-ILVATDVASRGLDIPAVDLVVNYDIPTNSKDYIHRVG 442
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA R + L + V ++I M + EAV + H
Sbjct 443 RTARAGRSGRSVTLVTQYDVELLQRIEAVIGLKMTE--FPGGNDKEAVMLLSERVAEAHR 500
Query 788 KFIRDSQEK 796
+R+ ++K
Sbjct 501 AAVRELKDK 509
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/163 (18%), Positives = 55/163 (34%), Gaps = 8/163 (5%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
+D + S+ P V P Q++ A++ ++ I A TG GKT
Sbjct 109 DDGKKVEFSDLGVIPQIVEACTNMGFKHPTPIQVKAIPEALQARDVIGLAQTGSGKTAAF 168
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYE---QQKSVFSKYFERHGYRVTGISGATAEN 331
+ L P + A + QQ + G +++
Sbjct 169 TIPILQALWDNP--KPFFACVLAPTRELAYQISQQVEALGSTIGVRSATIVGGMDMMSQS 226
Query 332 VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + +I+ TP L ++L+ SL ++ DE
Sbjct 227 IA---LSKRPHVIVATPGRLQDHLENTKGFSLRGLQYLVMDEA 266
>sp|Q0UY62|DBP3_PHANO ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP3 PE=3 SV=1
Length=592
Score = 92.5 bits (228), Expect = 5e-18, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 117/350 (33%), Gaps = 63/350 (18%)
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA----CMVFQMPDKDEES 532
+R SL K K ++ + RE Q Y+Q + A V+ KD +
Sbjct 235 PCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVALAHPAGLSVVCVYGGVPKDPQV 294
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
C+ + + + ND LI A + +A + D + GF+E + + + +
Sbjct 295 AACRKAHIVVATPGRLND-LIGDGSADLSNADYVVLDEADRMLDKGFEEPIRQIISQTPK 353
Query 593 KLQELESVSRDPS---------------------------------------NENPKLED 613
K Q L + P + + K +
Sbjct 354 KRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQR 413
Query 614 LCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L +L++ N + ++F + ++N+I + G +
Sbjct 414 LLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIR------------MKGFRVGGIHGD 461
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRG 729
++ + L AFK G +L+AT VA G+DI LVI + + I G
Sbjct 462 LSQEKRSASLAAFK-EGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTG 520
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYK--EKMMNDSILRLQTWDEAVFR 777
R G T + + IN+ K + + + +L+ T +
Sbjct 521 RAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLKFGTTVKKKEH 570
Score = 60.2 bits (144), Expect = 6e-08, Method: Composition-based stats.
Identities = 62/352 (18%), Positives = 109/352 (31%), Gaps = 22/352 (6%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVFSK 312
+ G++ + A TG GKT + C + P+ ++ K V + + Q
Sbjct 213 LSGRDMVGVAETGSGKTLAFGVPCVRAILSLPKDKRKGIKAVIVSPTRELAVQIYDQLVA 272
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
G V + G ++ V + + I++ TP L + + G+ LS ++ D
Sbjct 273 LAHPAGLSVVCVYGGVPKDPQVAACRKAH-IVVATPGRLNDLIGDGS-ADLSNADYVVLD 330
Query 373 ECHNTSKQH---PYNMIMFN--YLDQKLGGSSGPLPQV--IGLT--ASVG-VGDAKNTDE 422
E + P I+ Q L ++ P V + T S + N
Sbjct 331 EADRMLDKGFEEPIRQIISQTPKKRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSG 390
Query 423 ALDY---ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
L I +L LD L L+Q K R + + K I +
Sbjct 391 ELRANVRIKQLVEVLDPHAKEQRLLQL--LKQYQSGKNKDDRILVFCLYKKEAMRIENFI 448
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
R I DL + + + +V A +P + L
Sbjct 449 RMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLT 508
Query 540 LYTSHLRKYNDALIISEHARMKDALDY---LKDFFSNVRAAGFDEIEQDLTQ 588
R E + ++ L NV A E+ ++L +
Sbjct 509 AEDYVHRIGRTGRAGKEGLAITFFTEHDKGLSGSLINVLKAANQEVPEELLK 560
>sp|A5DZX2|DBP5_LODEL ATP-dependent RNA helicase DBP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP5 PE=3 SV=1
Length=511
Score = 92.2 bits (227), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/233 (19%), Positives = 86/233 (37%), Gaps = 34/233 (15%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
L++ + Y + F N + + E + ++ ++ + D N+ K
Sbjct 291 LVLFSATFPTEVRKYAEKFVPNANSLALKQEELN--------VKGIKQLYMDCKNQEHKF 342
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E LC E Y L +I+FV+ +A D+L ++ G + +
Sbjct 343 EVLC----ELYGLLTIGSSIIFVEQKATADSLYLRMKEE------------GHTVSILHG 386
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---------VGNVI 722
G+ + + ++D F+ G +LI T+V GIDIA ++V+ Y+ +
Sbjct 387 GLEVADRDRLIDDFR-EGRSKVLITTNVLARGIDIATVSMVVNYDLPRTKEGRPDPSTYL 445
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
I GR G + + + I Y +++ WDE
Sbjct 446 HRIGRTGRFGRVGVSVSFVANEKDYQTLKYIAEYFGIEDQMTVVPTDDWDEVE 498
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 43/117 (37%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
KN I + +G GKT L + + + + A + Q V +
Sbjct 156 KNMIGQSQSGTGKTAAFSLTMLS--RVDESIKAPQCICLAPTRELARQTLEVVETMGKYS 213
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++VP Q + +++ TP I+ + + + I ++ + + DE
Sbjct 214 NITYQLV---VPDSVPRGQAISA-QVLVGTPGIVHDLINRKAIN-VAKVKVFVLDEA 265
>sp|Q8K9H6|DEAD_BUCAP ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg) OX=198804
GN=deaD PE=3 SV=1
Length=601
Score = 92.5 bits (228), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/227 (23%), Positives = 95/227 (42%), Gaps = 33/227 (15%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP-------KLEDLCFI 617
K+ + + +A E + +++RF + QE++ +++ P + K + L
Sbjct 179 KEHQTALFSATMPEAIRRISKRFMKNPQEIKIQSNITTRPDIKQSYWMVYGRKTDALIRF 238
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L+ E TI+FVKT+ + +E N G N M
Sbjct 239 LEVEDFSA----TIIFVKTKNATLEVSEALERN------------GYNSAALNGDMNQAL 282
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RG 735
++ L+ K SG +ILIAT VA G+D+ + + VI Y+ + + GR GRA R
Sbjct 283 REQTLERLK-SGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRA 341
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
+ L N + ++ E+ +N +I +Q V ++ L
Sbjct 342 GRALLFVEN----RERRLLRNIERTINQTIPEVQLPKIEVLCKRRLE 384
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/121 (25%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ + A TG GKT L H+L + +++ A + Q FS +
Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLN--INLKAPQILVLAPTRELAVQVAEAFSDFS 98
Query 315 E-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G V + G V + + + I++ TP L+++LK+GT+ LS ++ DE
Sbjct 99 KYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLN-LSNLYALVLDE 157
Query 374 C 374
Sbjct 158 A 158
>sp|A6SFV4|DBP8_BOTFB ATP-dependent RNA helicase dbp8 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp8 PE=3 SV=1
Length=545
Score = 92.2 bits (227), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/153 (24%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L L E +L ++F A D L + + L T ++
Sbjct 358 HYLHMFLLTEKNLPKS--IVIFCNRTATADYLTHLLR------------LLDHRVTALHS 403
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI + LVI Y+ + I GR
Sbjct 404 KLPQRQRIDNLGRFRAS-AARILVATDVAARGLDIPEVGLVINYDIPRDPDDYIHRVGRT 462
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
RA R + V + I + M
Sbjct 463 ARAGRKGEAVSFVGQRDVQLIQAIENRVGRQME 495
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 46/125 (37%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I + TG GKT + + P G V + Q F
Sbjct 149 EILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALV--LTPTRELALQIYEQFKA 206
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ I+G + + + I+I TP L ++++ TI +L ++
Sbjct 207 ISSPQSLKAVLITGGSDMRPQATALAQRPHIVIATPGRLADHIRTSGEDTIGALRRVRMV 266
Query 370 IFDEC 374
+ DE
Sbjct 267 VLDEA 271
>sp|Q65RG7|RHLB_MANSM ATP-dependent RNA helicase RhlB OS=Mannheimia
succiniciproducens (strain MBEL55E) OX=221988 GN=rhlB
PE=3 SV=1
Length=417
Score = 91.0 bits (224), Expect = 6e-18, Method: Composition-based stats.
Identities = 50/295 (17%), Positives = 96/295 (33%), Gaps = 38/295 (13%)
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
A Q+ DE R+ + +R + L +
Sbjct 151 ALSHIQVVVLDEADRMF--DLGFIKDIRYLMRKCPSPKQRLTLLFSATLSYKVRELAFED 208
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
++ E + ++ ++ PSNE+ K+ L +L+EE+ I+F T+
Sbjct 209 MNDPEYVEVEPLQKTGHRIKEELFYPSNED-KMPLLITLLEEEWPE----RCIIFANTKH 263
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ + ++ + + G+LTG + + +L F G +IL+AT
Sbjct 264 QCEKIWGYLAADGH----RVGLLTG--------DVAQKKRLSLLKQF-TDGALDILVATD 310
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
VA G+ I V Y+ + + GR GRA S + +
Sbjct 311 VAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFA-------------- 356
Query 758 EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRK 812
+ + L +E + + + IRD + + P R
Sbjct 357 ---CEEYAMNLPAIEEYIGHHIAVSQYDSDSLIRDLAKPYRLKPSLPASNRHNRN 408
Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/122 (24%), Positives = 51/122 (42%), Gaps = 2/122 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPVYEQQKSVFSK 312
++ GK+ A TG GKT L HHL + P + + + A + Q +
Sbjct 43 SLAGKDVAGQAQTGTGKTMAFLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAER 102
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G + G + ++ I DIII T +++ +K+ I LS +++ D
Sbjct 103 MVKTTGLKTALAYGGDGYDKQLKAIEAGADIIIGTTGRIIDYVKQNIIA-LSHIQVVVLD 161
Query 373 EC 374
E
Sbjct 162 EA 163
>sp|Q58524|HELS_METJA ATP-dependent DNA helicase Hel308 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440) OX=243232 GN=hel308 PE=3 SV=1
Length=1195
Score = 93.3 bits (230), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/178 (23%), Positives = 74/178 (42%), Gaps = 13/178 (7%)
Query 242 KPRNYQLELALPAM--KGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKVVFFAN 298
+ R Q + + K KN +I PT GKT + + +H L K +F
Sbjct 15 ELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVP 74
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ ++ F +ER+G R+ G E ++ + +II T + L ++L +
Sbjct 75 LKALASEKYEEFKSKYERYGLRIALSIGDYDE----DEDLSKYHLIITTAEKL-DSLWRH 129
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
I ++ ++++ DE H L KL + Q+IGL+A++G D
Sbjct 130 KIDWINDVSVVVVDEIHLI--NDETRGGTLEILLTKLKEFNV---QIIGLSATIGNPD 182
>sp|A3LNL1|PRP28_PICST Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Scheffersomyces stipitis (strain ATCC 58785 /
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP28 PE=3
SV=2
Length=482
Score = 91.8 bits (226), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/161 (17%), Positives = 64/161 (40%), Gaps = 16/161 (10%)
Query 592 EKLQELESVSRDPSNENPK-LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ + L S + + + K + L I+Q+ + + I+F + + + +
Sbjct 302 QNFEYLGSATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANYKR----VCDLLSLE 357
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+ + + ++ + T ++ + +F++ + ILIAT VA GID+ +
Sbjct 358 LEKNGFRDNVVI-------HGSKTQELREKAISSFRSH-ESRILIATDVAARGIDVPNVS 409
Query 711 LVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVI 748
LV+ ++ + I GR RG + + +
Sbjct 410 LVVNFQMSRKFDEYVHRIGRTGRAGNRGESYTFIDDSDSDV 450
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/463 (16%), Positives = 150/463 (32%), Gaps = 69/463 (15%)
Query 197 TEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-----------KPRN 245
+E D+M D +IF ++ + P ++ ++ S +P
Sbjct 23 SEKSLDQMTARDWRIFREDYGITSKGGDIDNPLRTWNEASIPSKLLSIIVDKLEYLEPTP 82
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLIC--------EHHLKKFPQG----QKGKV 293
Q A+ ++ + A TG GKT L+ +++L+ Q K
Sbjct 83 IQRAAIPLALNQRDVVGIAETGSGKTLAFLIPLLSYILNTDKNYLEYEHQQEQNYNKPLG 142
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ A + +Q K+ +R G V I G V I +++ TP LV+
Sbjct 143 LILAPTRELAQQITKEAQKFGDRLGLNVVSIIGGHQYEETVHSIRTGVHVVVATPGRLVD 202
Query 354 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 413
+L++ I L +I DE + ++ ++ L +P
Sbjct 203 SLERNIIG-LDKCYYLIMDEA---------DRMIDMGFEKALQSILSYVPS--------T 244
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNL-----------------EELEQVVYKP 456
D + +I K + + I+ + E L+ +V
Sbjct 245 DRLNSTIDSMIFHIKKRITLMFTATISPPIEKITKNFLIKPGYLYIGGAGEALDHIVQNF 304
Query 457 QKF------FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
+ +S+ DK II Q R++ + I + + + + + E +
Sbjct 305 EYLGSATGGSEDFDSKRFDKLVRIIQQHSRESRQFSIIIFANYKRVCDLLSLELEKNGFR 364
Query 511 QWIVTVQKACMVFQMP----DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
+V + + ESRI A + + N +L+++ + +Y
Sbjct 365 DNVVIHGSKTQELREKAISSFRSHESRILIATDVAARGIDVPNVSLVVNFQ-MSRKFDEY 423
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP 609
+ RA E + + +L+ + + P
Sbjct 424 VHRIGRTGRAGNRGESYTFIDDSDSDVFIDLKKFLVNGGKKCP 466
>sp|A0A1D6GDY8|RH3A_MAIZE DEAD-box ATP-dependent RNA helicase
3A, chloroplastic OS=Zea mays OX=4577 GN=RH3A PE=3 SV=1
Length=745
Score = 92.9 bits (229), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 61/163 (37%), Gaps = 20/163 (12%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
DL +EKL E + P K L ++ TI+F +T+ D +
Sbjct 296 DLVGDQDEKLAEGIKLHAIPLTATSKRTILSDLITVY---AKGGKTIVFTRTKKDADEVS 352
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ T + ++ ++ L+ F+ G +L+AT VA G+
Sbjct 353 LALT-------------TSIASEALHGDISQHQRERTLNGFR-QGKFTVLVATDVAARGL 398
Query 705 DIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSN 744
DI +L+I YE + + GR G+ + TS+
Sbjct 399 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTSS 441
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/180 (20%), Positives = 68/180 (38%), Gaps = 9/180 (5%)
Query 201 EDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
E+ SD +Q D E ++ P V+ Q + +PA+ G++
Sbjct 69 EEGPYGSDADEGFQGDEEELAIARLGLPDELVATLEKRGITHLFPIQRAVLIPALGGRDL 128
Query 261 IICAPTGCGKTFVSLLICEHHL------KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
I A TG GKT + L + +G+ +V+ A + +Q + +
Sbjct 129 IARAKTGTGKTLAFGIPMIKQLMEQDDGRSTRRGRTPRVLVLAPTRELAKQVEKEIKESA 188
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + G + NV + D+++ TP +++ L G L ++ DE
Sbjct 189 PKLGTVC--VYGGVSYNVQQNALSRGVDVVVGTPGRIID-LINGGSLQLGEVQYLVLDEA 245
>sp|A6RC50|DBP5_AJECN ATP-dependent RNA helicase DBP5 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP5 PE=3
SV=1
Length=497
Score = 91.8 bits (226), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/212 (21%), Positives = 75/212 (35%), Gaps = 33/212 (16%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
Q + E ++ ++ + D ++ K IL + Y L +I+FVKTRA
Sbjct 290 ANQITLKHEELTVEGIKQLYLDCDSDEHKF----DILVKFYGLLTIGSSIIFVKTRASAV 345
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + + G + G+ + I+D F+ GD +LI T+V
Sbjct 346 EIERRM------------VAEGHTVVSLTGGVEGQKRDEIIDKFR-QGDAKVLITTNVLA 392
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID+ ++VI Y+ + I GR G + S
Sbjct 393 RGIDVQTVSMVINYDIPELHAPKATKRIADAQTYLHRIGRTGRFGRVGVAVSFVASKEEW 452
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
+ I Y + + Q WDE K
Sbjct 453 QMLQDIKTYFNTEIQR--VNTQDWDEVEEVVK 482
Score = 50.9 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ-KGKVVFFANQIPVYEQQKSVFSKYFERH 317
N I + +G GKT +L L PQ + + + A + Q V + +
Sbjct 130 NMIGQSQSGTGKTAAFVLNILSRLDLSPQMELAPQALVLAPSRELARQIVGVI-QVMGSY 188
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ + E+ +++ +++ TP +++ ++K + + +++ DE
Sbjct 189 VDKLKVATAVPMESNRNQKV--EAPVVVGTPGTVMDLIRK-RLFNPQHLKVIVLDEA 242
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=DBP2 PE=3 SV=1
Length=495
Score = 91.8 bits (226), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 21/189 (11%)
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILF 633
+ + +E Q + E K + + K + L +L I+F
Sbjct 282 LAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGD----KVIVF 337
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
+ D L+ + +G G + + + +LD F+ SG I
Sbjct 338 CNMKRTCDDLEYVLNR------------SGYGAAALHGDKSQNIRDKVLDDFR-SGRRPI 384
Query 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR---ARGSKCFLLTSNAGVIE 749
LIAT VA G+D+ LVI +++ G+ + GR R G T
Sbjct 385 LIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANA 444
Query 750 KEQINMYKE 758
+E I M +E
Sbjct 445 RELIRMLRE 453
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/189 (22%), Positives = 76/189 (40%), Gaps = 5/189 (3%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQL 248
+ I + ++ +T+++ + P E + SEV + + F +P Q
Sbjct 56 ESISRMTPSEVSSFRKTNEMIVKGTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQG 115
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF---PQGQKGKVVFFANQIPVYEQ 305
+ A+ G++ + A TG GKT +L H K +G V+ A + Q
Sbjct 116 QGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQ 175
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
K V ++ R T + G + + + E +++I TP L++ L LS
Sbjct 176 IKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLID-LHDQGHAPLSR 234
Query 366 FTLMIFDEC 374
T ++ DE
Sbjct 235 VTFLVLDEA 243
>sp|Q12WZ6|HELS_METBU ATP-dependent DNA helicase Hel308 OS=Methanococcoides
burtonii (strain DSM 6242 / NBRC 107633 / OCM
468 / ACE-M) OX=259564 GN=hel308 PE=3 SV=1
Length=760
Score = 92.5 bits (228), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/184 (22%), Positives = 77/184 (42%), Gaps = 19/184 (10%)
Query 234 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
D+ + + P+ +E+ L ++ KN + PT GKT ++ L ++ + GK
Sbjct 18 DSGIKELYPPQAEAIEMGL--LEKKNLLAAIPTASGKTLLAELAMIKAIR-----EGGKA 70
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
++ + ++ F K G +V +G + NDII+ T + +
Sbjct 71 LYIVPLRALASEKFERF-KELAPFGIKVGISTGDLDSRADW---LGVNDIIVATSEKTDS 126
Query 354 NLKKGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
L+ GT + T ++ DE H ++ + P + L + P QV+ L+A+
Sbjct 127 LLRNGT-SWMDEITTVVVDEIHLLDSKNRGPTLEVTITKLMRL-----NPDVQVVALSAT 180
Query 412 VGVG 415
VG
Sbjct 181 VGNA 184
>sp|P44586|DEAD_HAEIN ATP-dependent RNA helicase DeaD OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=deaD PE=3 SV=1
Length=613
Score = 92.2 bits (227), Expect = 7e-18, Method: Composition-based stats.
Identities = 53/248 (21%), Positives = 93/248 (38%), Gaps = 40/248 (16%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP-----------KLEDLCF 616
++ + + +A E + +T+RF QE++ + + + K E L
Sbjct 178 ENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLR 237
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+F +T+ + +E N G N MT
Sbjct 238 FLEVEDFDA----AIIFARTKTGTLDITELLEKN------------GFRSAALNGDMTQQ 281
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ LD + +G +I++AT VA GIDI + +LV+ Y+ + + GR GRA R
Sbjct 282 LREQTLDRLR-NGSLDIVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGR 340
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSI----LRLQTWDEAVFREKI------LHIQ 784
+ L I +K +N+ L LQ F KI ++
Sbjct 341 SGRALLFVEPRERRLLRNIEHLMKKGINEVELPNHLVLQECRRKKFVAKITKQLEHHDLE 400
Query 785 THEKFIRD 792
+ + D
Sbjct 401 QYRSLLED 408
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 53/121 (44%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + + A TG GKT L + P + +++ A + Q +
Sbjct 40 LNGNDVLGMAQTGSGKTAAFALPLLAQID--PSEKHPQMLVMAPTRELAIQVADACELFV 97
Query 315 E-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G R+ + G ++ + + + +++ TP +++++++GT+ LS ++ DE
Sbjct 98 KYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRGTLN-LSELRFIVLDE 156
Query 374 C 374
Sbjct 157 A 157
>sp|Q5AWA6|DBP3_EMENI ATP-dependent RNA helicase dbp3 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp3 PE=3 SV=2
Length=488
Score = 91.4 bits (225), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 63/176 (36%), Gaps = 19/176 (11%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ K + L IL P+ + F + ++ + G
Sbjct 305 HEKEQRLVQILNRHQRGTPD-KVLAFCLYKKEAMRVERLLRTK------------GFKVA 351
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKM 724
+ ++ + L+AFK SG +L+AT VA G+DI LV+ + +
Sbjct 352 GIHGDLSQQERFRSLEAFK-SGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHR 410
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK--EKMMNDSILRLQTWDEAVFRE 778
I GR A G L T IN+ K + + +++L+ + + +
Sbjct 411 IGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKFGSTVKKKQHD 466
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/192 (20%), Positives = 68/192 (35%), Gaps = 17/192 (9%)
Query 188 VEKGIKD--VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRN 245
++K + D ++ D + I + P N + S T + S P
Sbjct 49 IDKFLSDHSIKITDASADKPSLRPIISFSFLPP-SNKDLYAPLDGFASPTAIQSATWP-- 105
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH---LKKFPQGQKGKVVFFANQIPV 302
L G++ I A TG GKT L C LK + + V + +
Sbjct 106 ----LLFA---GRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTREL 158
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q K+ E+ +V I G ++ E +++ +++ TP L +L+
Sbjct 159 AMQIYDQLVKFAEKVDIQVACIFGGVKKDEQRE-ALKSAAVVVATPGRL-KDLQNDGSLD 216
Query 363 LSIFTLMIFDEC 374
L ++ DE
Sbjct 217 LGRVKYLVLDEA 228
>sp|P0CQ88|PRP28_CRYNJ Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Cryptococcus neoformans var. neoformans serotype
D (strain JEC21 / ATCC MYA-565) OX=214684 GN=PRP28 PE=3
SV=1
Length=738
Score = 92.5 bits (228), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 68/186 (37%), Gaps = 26/186 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL+ P I+FV + D + +++ G
Sbjct 570 KKARLIEILRTIGLPPP---IIVFVNQKKTADMVVKYVQQ------------AGMSGVTL 614
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQ 726
++G + ++ L A + G+ ++L+AT +A GID+ +LVI + + + + I
Sbjct 615 HSGKSQEQREAALQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIG 673
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR G LT++ + + + ++ + + R + +
Sbjct 674 RTGRAGKTGVAITFLTNDDDEVMYDL-------RIEVEKSKMSKMNPELARHEAARTRVT 726
Query 787 EKFIRD 792
+ R
Sbjct 727 REMKRK 732
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 88/235 (37%), Gaps = 11/235 (5%)
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMET 206
G +AG + + RSD P + A++ + + W +K + +++ D E
Sbjct 244 GRLAGMDGAKKNETRSDNHADPLERRRAVKGKDDD--RHWS-DKPLDEMKERDWRIFRED 300
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAP 265
I P S PS++ D + +P Q + M+ ++ I A
Sbjct 301 FSIAARGGGIPHPLRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAK 360
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGK------VVFFANQIPVYEQQKSVFSKYFERHGY 319
TG GKT ++ ++ P + A + +Q ++ ++ GY
Sbjct 361 TGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGY 420
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I G + + + +III TP L + + K + +S ++ DE
Sbjct 421 KCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILV-MSQCRYVVMDEA 474
>sp|P0CQ89|PRP28_CRYNB Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Cryptococcus neoformans var. neoformans serotype
D (strain B-3501A) OX=283643 GN=PRP28 PE=3 SV=1
Length=738
Score = 92.5 bits (228), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 68/186 (37%), Gaps = 26/186 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L IL+ P I+FV + D + +++ G
Sbjct 570 KKARLIEILRTIGLPPP---IIVFVNQKKTADMVVKYVQQ------------AGMSGVTL 614
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY---EYVGNVIKMIQ 726
++G + ++ L A + G+ ++L+AT +A GID+ +LVI + + + + I
Sbjct 615 HSGKSQEQREAALQALR-DGEISVLVATDLAGRGIDVPDVSLVINWQMSDTIEKYVHRIG 673
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR G LT++ + + + ++ + + R + +
Sbjct 674 RTGRAGKTGVAITFLTNDDDEVMYDL-------RIEVEKSKMSKMNPELARHEAARTRVT 726
Query 787 EKFIRD 792
+ R
Sbjct 727 REMKRK 732
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 88/235 (37%), Gaps = 11/235 (5%)
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMET 206
G +AG + + RSD P + A++ + + W +K + +++ D E
Sbjct 244 GRLAGMDGAKKNETRSDNHADPLERRRAVKGKDDD--RHWS-DKPLDEMKERDWRIFRED 300
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAP 265
I P S PS++ D + +P Q + M+ ++ I A
Sbjct 301 FSIAARGGGIPHPLRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAK 360
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGK------VVFFANQIPVYEQQKSVFSKYFERHGY 319
TG GKT ++ ++ P + A + +Q ++ ++ GY
Sbjct 361 TGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGY 420
Query 320 RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I G + + + +III TP L + + K + +S ++ DE
Sbjct 421 KCVSIVGGRSVEEQQFALRDGAEIIIATPGRLKDMVDKSILV-MSQCRYVVMDEA 474
>sp|P38719|DBP8_YEAST ATP-dependent RNA helicase DBP8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP8
PE=1 SV=1
Length=431
Score = 90.6 bits (223), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/159 (24%), Positives = 60/159 (38%), Gaps = 17/159 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L E + N I+FV + L+ ++ ++ L
Sbjct 236 EHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE----VRVASL----- 284
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++ M + L F+A+ ILIAT VA G+DI LV+ Y+ + I
Sbjct 285 ---HSQMPQQERTNSLHRFRAN-AARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIH 340
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR RA R + V + I K M +
Sbjct 341 RSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379
Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 43/123 (35%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ I A TG GKT + P G G V + Q F+
Sbjct 37 LEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFG--VVLTPTRELAMQIAEQFTALG 94
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIF 371
RV+ I G + + II TP L +++ T+ L ++
Sbjct 95 SSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVL 154
Query 372 DEC 374
DE
Sbjct 155 DEA 157
>sp|A6ZT77|DBP8_YEAS7 ATP-dependent RNA helicase DBP8 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP8 PE=3 SV=1
Length=431
Score = 90.6 bits (223), Expect = 8e-18, Method: Composition-based stats.
Identities = 38/159 (24%), Positives = 60/159 (38%), Gaps = 17/159 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L E + N I+FV + L+ ++ ++ L
Sbjct 236 EHVKEAYLYQLLTCEEYENKT--AIIFVNRTMTAEILRRTLKQLE----VRVASL----- 284
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++ M + L F+A+ ILIAT VA G+DI LV+ Y+ + I
Sbjct 285 ---HSQMPQQERTNSLHRFRAN-AARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIH 340
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR RA R + V + I K M +
Sbjct 341 RSGRTARAGRIGDAISFVTQRDVSRIQAIEDRINKKMTE 379
Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 43/123 (35%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ I A TG GKT + P G G V + Q F+
Sbjct 37 LEGRDCIGGAKTGSGKTIAFAGPMLTKWSEDPSGMFG--VVLTPTRELAMQIAEQFTALG 94
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIF 371
RV+ I G + + II TP L +++ T+ L ++
Sbjct 95 SSMNIRVSVIVGGESIVQQALDLQRKPHFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVL 154
Query 372 DEC 374
DE
Sbjct 155 DEA 157
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis
thaliana OX=3702 GN=RH40 PE=2 SV=1
Length=1088
Score = 92.5 bits (228), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 57/152 (38%), Gaps = 17/152 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
P++E + Q + I+F T+ L D L + + G
Sbjct 662 PQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-------------FGAVV 708
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMI 725
+ T + +L+ F+ SG +LIAT VA G+DI +VI Y++ + + I
Sbjct 709 IHGDKTQGERDWVLNQFR-SGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRI 767
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR A G T + I + +
Sbjct 768 GRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query 224 ENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICE 279
E+S P E+ L + F P Q + A++ ++ + A TG GKT + I
Sbjct 438 ESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILL 497
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
H + + V+ A + Q Q + T + G + ++++
Sbjct 498 RHCRNDSR-NGPTVLILAPTRELATQIQDEALR-FGRSSRISCTCLYGGAPKGPQLKELE 555
Query 339 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
DI++ TP L + L+ I +L++ DE
Sbjct 556 RGADIVVATPGRLNDILEMKMID-FQQVSLLVLDEA 590
>sp|A1SZG4|RHLB_PSYIN ATP-dependent RNA helicase RhlB OS=Psychromonas
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804
GN=rhlB PE=3 SV=1
Length=418
Score = 90.6 bits (223), Expect = 9e-18, Method: Composition-based stats.
Identities = 46/304 (15%), Positives = 97/304 (32%), Gaps = 51/304 (17%)
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
+ L+ + + +R + RE Q ++ +V + + + E
Sbjct 64 LPAVFHHLLTNAQPENRRK-NQPRAIILAPTRELAIQIHKDAMVLASMSNLRLGLAYGGE 122
Query 531 ESRICKALFLYTSHLRKYNDALIIS-----------------EHARMKDALDYLKD--FF 571
+ I + + I + A L ++KD +
Sbjct 123 KVEIQRTKLEKGVDILIGTTGRTIDFVKQGVIDMGSIQSVVLDEADRMFDLGFIKDIRYL 182
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE---NPKLEDLCFILQEEYHLNPET 628
+ + K+QEL + P++ I +E ++ + +
Sbjct 183 FRRMPEAKSRLNMLFSATLSHKVQELAFEHMNDPESIQIEPEVMTSVNITEELFYPSNQD 242
Query 629 I---------------TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
I+F T+ + + ++ G+ L+ G+LTG +
Sbjct 243 KILLLLSLIEEDWPDKAIVFANTKHTCEKVWGYLAGD----GLRTGLLTG--------DV 290
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
+ IL F G+ +IL+AT VA G+ I + + V ++ + + GR
Sbjct 291 PQNKRLKILQQF-TDGEIDILVATDVAARGLHIPKVSHVFNFDLPDDCEDYVHRIGRTGR 349
Query 734 RGSK 737
G K
Sbjct 350 AGEK 353
Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLK-----KFPQGQKGKVVFFANQIPVYEQQKSV 309
+ GK+ A TG GKT L HHL + + + + + A + Q
Sbjct 44 LTGKDIAGQAQTGTGKTLAFLPAVFHHLLTNAQPENRRKNQPRAIILAPTRELAIQIHKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
R+ G + ++ + DI+I T ++ +K+G I SI + +
Sbjct 104 AMVLASMSNLRLGLAYGGEKVEIQRTKLEKGVDILIGTTGRTIDFVKQGVIDMGSIQS-V 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase
prp11 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) OX=284812 GN=prp11 PE=1 SV=1
Length=1014
Score = 92.5 bits (228), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E K L +L E Y+ + T++FV + DAL + + G
Sbjct 648 EESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR------------GYTS 695
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIK 723
+ + G + + +KA G ++LIATSV G+D+ LV+ Y+ + +
Sbjct 696 NSIHGGKDQHDRDSTISDYKA-GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ GR G +T + K
Sbjct 755 RVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALK 788
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/202 (19%), Positives = 77/202 (38%), Gaps = 8/202 (4%)
Query 181 KFSELWIVE-KGIKDVETEDLED-KMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNL 237
F + + VE + +K++ ++++ + I+I + P + S+ +S N
Sbjct 376 DFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINS 435
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VV 294
KP + Q + G++ I A TG GKT LL H+K + G+ +
Sbjct 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ Q + + R G + + +I++ TP +++
Sbjct 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query 355 LK--KGTIPSLSIFTLMIFDEC 374
L G + +L T ++ DE
Sbjct 556 LSANAGRVTNLHRCTYLVLDEA 577
>sp|Q5AVM1|DBP5_EMENI ATP-dependent RNA helicase dbp5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp5 PE=3 SV=1
Length=477
Score = 91.0 bits (224), Expect = 9e-18, Method: Composition-based stats.
Identities = 46/213 (22%), Positives = 81/213 (38%), Gaps = 35/213 (16%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ Q E ++ ++ + D ++E K L + Y L +I+FVKTRA
Sbjct 272 ANELTLQHEELTVEGIKQLYLDCASEEDKYRTLVQL----YGLLTVGSSIIFVKTRASAV 327
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + + G + G+ + I+D F+A G +LI T+V
Sbjct 328 EIERRM------------VAEGHTVASLTGGIEGSQRDQIIDQFRA-GHAKVLITTNVLA 374
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID++ ++VI Y+ + I GR G +++
Sbjct 375 RGIDVSTVSMVINYDIPELHQPPNRPRQADFQTYLHRIGRTGRFGRVGVSISFVSNRE-- 432
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
E E +N + K N I R+ T D + I
Sbjct 433 -EWEMLNQIQ-KYFNTDIQRIDTKDWDEVEDII 463
Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KN + + +G GKT +L L + + + + A + Q V +
Sbjct 109 KNLVGQSQSGTGKTAAFVLNILSRLDLSSEQAQKTPQALILAPTRELARQIVGVI-QVMG 167
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + A+ +E + +++ TP +++ +KK + + + +++ DE
Sbjct 168 KFLDGLHIGTAVPADTNARPTRMEAS-VVVGTPGTVMDMIKKRIMVA-AKLKVIVLDEA 224
>sp|Q15N18|RHLB_PSEA6 ATP-dependent RNA helicase RhlB OS=Pseudoalteromonas
atlantica (strain T6c / ATCC BAA-1087) OX=3042615
GN=rhlB PE=3 SV=1
Length=421
Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/438 (15%), Positives = 134/438 (31%), Gaps = 40/438 (9%)
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E H P N + L P + L+ + +A K A
Sbjct 8 ETHFA--DLPINEQVVKALSAANFSHCTP---IQALSLPPLLEGNDIAGQAQTGTGKTIA 62
Query 433 SLDAS---VIATVKHNLEELEQVVYKPQKFFRKV---ESRISDKFKYIIAQLMRDTESLA 486
L A+ +++ + ++ ++ P + ++ + + + L+ E
Sbjct 63 FLVATFHYLLSNPQPTKKQPRAIIMAPTRELAVQIFNDAELLSQHTGLSLGLIYGGEGYQ 122
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+ K E + I Y + + Q+ DE R+ + +R
Sbjct 123 SQREKLEEGVDIIIGTTGRIIDYYKQNIFSLAGI---QVAVLDEADRMF--DLGFIKDIR 177
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
+ + L + D + + ++ PS+
Sbjct 178 YLFNRMPKPTERLSMLFSATLSYRVQELAYEHMDNPTHVQVEPERKTGTRIKEELFYPSD 237
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K+ L +++EE+ I+F T+ + + +W++ + + G+L+G
Sbjct 238 ED-KMALLLSLMEEEWPD----KAIVFANTKHSCEKVADWLQADGH----RVGLLSG--- 285
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIK 723
+ + IL+ F SG +IL+AT VA G+ I + V Y+ + +
Sbjct 286 -----DVPQNKRLKILEDF-TSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVH 339
Query 724 MIQTRGRGRARGSKCFLLTSNAGV---IEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
I GR GS + + I + L+ R K
Sbjct 340 RIGRTGRAGQSGSSISFACERYALNLPAIETYIEHAIPVTEYQADALLRDVTPPKPRHKK 399
Query 781 LHIQTHEKFIRDSQEKPK 798
R S
Sbjct 400 RMQNGRNPQKRQSSGSRN 417
Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 28/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
++G + A TG GKT ++ L+ H P ++ + + A + Q +
Sbjct 44 LEGNDIAGQAQTGTGKT-IAFLVATFHYLLSNPQPTKKQPRAIIMAPTRELAVQIFNDAE 102
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G + I G E++ E DIII T +++ K+ I SL+ + +
Sbjct 103 LLSQHTGLSLGLIYGGEGYQSQREKLEEGVDIIIGTTGRIIDYYKQ-NIFSLAGIQVAVL 161
Query 372 DEC 374
DE
Sbjct 162 DEA 164
>sp|Q6CDV4|IF4A_YARLI ATP-dependent RNA helicase eIF4A OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIF1
PE=3 SV=1
Length=395
Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 60/154 (39%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
++ + + L ++ E L+ ++ D E+ K E LC + Y + ++
Sbjct 211 DITGKFMRDPVRILVKKDELTLEGIKQFYIDVEQESYKFEVLC----DLYETINVSQAVI 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD L + ++ + + I+ AF+ +G
Sbjct 267 FCNTRRKVDYLTQALTE------------ADFTVSSMHGETEQSQRDVIMKAFR-TGSSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI T + GID+ Q +LVI ++ N I
Sbjct 314 ILITTDLLARGIDVQQVSLVINFDLPSNRENYIH 347
Score = 59.0 bits (141), Expect = 9e-08, Method: Composition-based stats.
Identities = 39/230 (17%), Positives = 80/230 (35%), Gaps = 9/230 (4%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
Y P + Q LP +KG + + A +G GKT + + +K + +
Sbjct 38 YGYGFENPSSIQQRAILPVIKGNDVLAQAQSGTGKT--ATFSISALQNIDEKIKKPQALI 95
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q + V + E G T+ + I E +I+ TP + + +
Sbjct 96 IAPTRELAHQIQKVVLAFGEYMKIECHACIGGTSVAEDIRVIQEGVHVIVGTPGRIHDMI 155
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
++ I + + I DE + + + V+ L+A++
Sbjct 156 ER-RILKTDLIKMFILDEA-----DEMLSREFKDPIYDIFTTLPETTQTVL-LSATMPAE 208
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
T + + ++ D + +K ++EQ YK + E+
Sbjct 209 VLDITGKFMRDPVRILVKKDELTLEGIKQFYIDVEQESYKFEVLCDLYET 258
>sp|A7EY76|DBP5_SCLS1 ATP-dependent RNA helicase dbp5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp5 PE=3 SV=1
Length=470
Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/227 (18%), Positives = 72/227 (32%), Gaps = 37/227 (16%)
Query 551 ALIISEHARMKDALDYLKDFFSNV---RAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
L + +++ L + F V + +R E + ++ + D NE
Sbjct 233 CLRVKSMIKVEQILLFSATFPDEVYGFAQQFSPRANEIKLKRDELTVSGIKQMFMDCPNE 292
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
K E IL + Y L +I+FVK R + + G
Sbjct 293 VGKYE----ILVKLYGLMTIGSSIIFVKRRDTASHIAERLTAE------------GHKVA 336
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---------- 717
+ + +L+ F+ G +LI T+V GID+ ++VI Y+
Sbjct 337 AIHGAFEGAERDTVLEDFR-QGKAKVLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEP 395
Query 718 -VGNVIKMIQTRGRGRARGSKCFLLTSN------AGVIEKEQINMYK 757
+ I GR G + + I++ K
Sbjct 396 DPETYLHRIGRTGRFGRVGVSISFVFDRKSYDALNKIAHHYNIDLIK 442
Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (42%), Gaps = 7/117 (6%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N I + +G GKT ++ L F + + + A + Q + V G
Sbjct 110 NMIAQSQSGTGKTAAFVITILSRL-DFSKPTTPQALCLAPSRELARQIEGVVRSI----G 164
Query 319 YRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V G+S A VE+ N +I+ TP +++ +K+ +I + S ++ DE
Sbjct 165 QFVEGLSVQAAIPGAVERNARVNAMVIVGTPGTVMDLIKRKSIDA-SQMKVLCLDEA 220
>sp|Q9HGM5|DBP8_SCHPO ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp8
PE=3 SV=1
Length=453
Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 23/211 (11%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
N + I+FV + + + + L L+ L ++ M + L
Sbjct 256 NAKKSAIIFVNRTRTAELIYSILR----LLELRVTEL--------HSEMVQRERINSLGR 303
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
F+A IL+AT VA G+DI LVI ++ + I GR RA R + +
Sbjct 304 FRAEAAK-ILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV 362
Query 743 SNAGVIEKEQINMYKEKMMND-----SILRLQTWDEAVFREKILHIQTHEK---FIRDSQ 794
+ V I +++ L+ E ++ ++ ++ R +
Sbjct 363 TERDVDLVHAIEDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKR 422
Query 795 EKPKPVPDKENKKLLCRKCKALACYTADVRV 825
+ + + + + KL K A T
Sbjct 423 NEKRLMANGISNKLKNSGRKKKAKNTLSTEK 453
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query 218 ECQNLSENSCPPSEVSDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
+ + + DT + ++P + Q + ++G+N I A TG GKT L
Sbjct 4 HTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFAL 63
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVP 333
K P G + + Q Q + + G +++
Sbjct 64 PIIEKWSKDPSGIFALI--LTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSI- 120
Query 334 VEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
+ + +++ TP L + ++ TI L ++ DE
Sbjct 121 --DLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEA 162
>sp|A3LS22|RRP3_PICST ATP-dependent rRNA helicase RRP3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=RRP3 PE=3 SV=3
Length=484
Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/200 (24%), Positives = 77/200 (39%), Gaps = 29/200 (15%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +L E + I+F +TRA + + + + IL G
Sbjct 297 KNTYLIHLLNEFVGKS----IIIFARTRA-----------HTQRTSILCRIL-GFSAVPL 340
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ +T + L+ FK SG NILIAT VA G+DI ++VI Y+ + + G
Sbjct 341 HGDLTQAQRLGSLNKFK-SGTANILIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVG 399
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA R K L + + + MY + SI + D + + + + H
Sbjct 400 RTARAGRSGKSISLVT------QYDLEMYL--RIEQSIQKKLPKDPSPPKAMLDALHVH- 450
Query 788 KFIRDSQEKPKPVPDKENKK 807
R E + + K
Sbjct 451 -VDRAYAEAIRQTKEFHEKT 469
Score = 67.5 bits (163), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/181 (21%), Positives = 66/181 (36%), Gaps = 2/181 (1%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
+ E++ + + +++ ++ + SE P + KP Q E
Sbjct 45 EEESKPESSQKSKNIVEVNPDDEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPH 104
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++GK+ I A TG GKT + L + G V A + Q K F
Sbjct 105 ALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLV--LAPARELAYQIKETFDAL 162
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G R + G ++ III TP ++++L+ SL + + DE
Sbjct 163 GSTMGVRTVCLVGGMDMMDQARDLMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDE 222
Query 374 C 374
Sbjct 223 A 223
>sp|P57453|DEAD_BUCAI ATP-dependent RNA helicase DeaD OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806
GN=deaD PE=3 SV=1
Length=601
Score = 91.4 bits (225), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/227 (22%), Positives = 93/227 (41%), Gaps = 33/227 (15%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP-------KLEDLCFI 617
K+ + + +A E + +++RF +E++ +++ P + K + L
Sbjct 179 KEHQTALFSATMPEAIRRISKRFMRNPKEIKIQSNITTRPDIKQSYWMVYGRKTDALIRF 238
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L+ E TI+FV+T+ + +E N G N M
Sbjct 239 LEAEDFSA----TIIFVRTKNATLEVSEALERN------------GYNSAALNGDMNQAL 282
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RG 735
++ L+ K +G +ILIAT VA G+D+ + + VI Y+ + + GR GRA R
Sbjct 283 REQTLERLK-NGRLDILIATDVAARGLDVDRISFVINYDIPMDSESYVHRIGRTGRAGRA 341
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
+ L N + ++ E+ M SI +Q + ++ L
Sbjct 342 GRALLFVEN----RERRLLRNIERTMKQSIPEVQLPKVELLCQRRLE 384
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/121 (24%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ + A TG GKT L H+L + +++ A + Q FS +
Sbjct 41 LEGRDVLGMAQTGSGKTAAFSLPLLHNLN--INLKAPQILVLAPTRELAVQVAEAFSDFS 98
Query 315 ERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G V + G + + + + I++ TP L+++LK+GT+ LS ++ DE
Sbjct 99 KYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLN-LSNLHGLVLDE 157
Query 374 C 374
Sbjct 158 A 158
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus
laevis OX=8355 GN=ddx42 PE=2 SV=1
Length=947
Score = 92.2 bits (227), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/237 (18%), Positives = 78/237 (33%), Gaps = 33/237 (14%)
Query 529 DEESRICKALFLY-----TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
DE R+ F Y +H+R L+ S R K ++ ++ ++
Sbjct 404 DEADRMFDMGFEYQVRSIANHVRPDRQTLLFSATFRKK-----IEKLARDILVDPIRVVQ 458
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
D+ + E+ Q +E + P L ++FV +A + L
Sbjct 459 GDIGEANEDITQVVEILPSGPEKWTWLTRRLVEF-------TSTGSVLVFVTKKANAEEL 511
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + + M + ++ FK +L+AT VA G
Sbjct 512 AANLRQD------------DHPLGLLHGDMDQSERNKVISDFKKK-SIPVLVATDVAARG 558
Query 704 IDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI V+ Y+ ++ I GR +G LLTS + + +
Sbjct 559 LDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSKESNFAGDLVRNLE 615
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (43%), Gaps = 4/136 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
+P Q + A+ G++ I A TG GKT + H+ + Q V
Sbjct 272 QPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCP 331
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ +Q S ++ + + R + G + + + E +I++ TP L++++KK
Sbjct 332 TRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 391
Query 359 TIPSLSIFTLMIFDEC 374
+L T ++FDE
Sbjct 392 A-TNLQRVTYLVFDEA 406
>sp|O01836|GLH3_CAEEL ATP-dependent RNA helicase glh-3 OS=Caenorhabditis
elegans OX=6239 GN=glh-3 PE=1 SV=1
Length=720
Score = 91.8 bits (226), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/229 (19%), Positives = 82/229 (36%), Gaps = 25/229 (11%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR---DPSNENPKLED 613
+ + + F S+V+ A + +D T +K+ + + K++
Sbjct 482 KNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTSKVDK 541
Query 614 LCFIL---QEEYHLNPET-----ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
L +L + Y + TI+FV + + D L + +
Sbjct 542 LLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSA------------AQVP 589
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + L F+ SG +LIAT+V + G+DI + VI Y+ N+ I
Sbjct 590 AITIHGAREQKERSAALKLFR-SGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYI 648
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
GR R TS + + QI + + D+ + +W +
Sbjct 649 HRIGR-TGRVGNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMKE 696
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (36%), Gaps = 8/164 (5%)
Query 218 ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLI 277
C++ S++ P S + + Q GK+ + CA TG GKT LL
Sbjct 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLP 355
Query 278 CEHHL---KKFPQGQKG----KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
L K G +G + + + +Q + K+ + + + G
Sbjct 356 IMSRLILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINV 415
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
QI++ II+ T + + + G I L ++ DE
Sbjct 416 GYNKSQIMKGCTIIVGTIGRVKHFCEDGAI-KLDKCRYLVLDEA 458
>sp|Q26696|DDX17_TRYBB Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma
brucei brucei OX=5702 GN=HEL64 PE=3 SV=1
Length=568
Score = 91.4 bits (225), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L++ + E ++F K + D L+ + G +
Sbjct 336 LRKLMQEHREERVLVFCKMKRTADELERQLRRW------------GYDAMAIHGDKEQRQ 383
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRAR 734
++ IL F+ L+AT VA G+DI Q VI Y++ + + I GR
Sbjct 384 REFILARFRKDPRL-CLVATDVAARGLDIKQLETVINYDFPMQIDDYVHRIGRTGRAGGE 442
Query 735 GSKCFLLTSNAGVIEKEQINMY 756
G +L+T I +
Sbjct 443 GRCVYLITKKEAQITPSVLKEL 464
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/190 (19%), Positives = 66/190 (35%), Gaps = 14/190 (7%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY------Q 247
+ E+ E I IF + P + ++ C + L +N+ Q
Sbjct 73 QLSEEEATKWREEHVITIFGDDCPPPMSSFDHLC---GIVPPYLLKKLTAQNFTAPTPVQ 129
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQIPVYE 304
+ + G++ + A TG GKT ++ H+ + G VV A +
Sbjct 130 AQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAPTRELA- 188
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
QQ +K + G + + + I++ TP L++ L I L
Sbjct 189 QQIEEETKKVIPGDVYCGCVYGGAPKGPQLGLLRRGVHILVATPGRLIDFLDIKRIN-LH 247
Query 365 IFTLMIFDEC 374
T ++ DE
Sbjct 248 RVTYLVLDEA 257
>sp|P44701|SRMB_HAEIN ATP-dependent RNA helicase SrmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=srmB PE=3 SV=1
Length=439
Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (43%), Gaps = 3/135 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQ 299
+P Q+E AM+ + + APTG GKT LL HL +P+ + G +++
Sbjct 26 RPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPT 85
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q + + + I+G A + N D+++ TP L+ +K+
Sbjct 86 RELAMQVAEQAEELAQFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEEN 145
Query 360 IPSLSIFTLMIFDEC 374
S ++IFDE
Sbjct 146 FDCRS-VEMLIFDEA 159
Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/369 (15%), Positives = 114/369 (31%), Gaps = 41/369 (11%)
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDAS----VIATVKHNLEELEQVVYKPQKFF 460
V+G S G K L + L I + E QV + ++
Sbjct 44 VLG---SAPTGTGKTAAFLLPALQHLLDYPRRKPGPPRILVLTPTRELAMQVAEQAEELA 100
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ I+ + Q D + + + +E ++ +A
Sbjct 101 QFTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEAD 160
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
+ QM + +I + R L+ S + +D+ + ++ +
Sbjct 161 RMLQMGFGQDAEKI-------AAETRWRKQTLLFSATLEGELLVDFAERLLNDPVKVDAE 213
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
++ +++ + K++ L + T I+F++ R
Sbjct 214 PSRRER--------KKINQWYYHADSNEHKIKLLARFI----ETEEVTRGIVFIRRREDA 261
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L + ++ L G M + +D K SG +L+AT VA
Sbjct 262 RELSETLRK----RGIRSAYLEG--------EMAQTQRNNAIDKLK-SGIVTVLVATDVA 308
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKE 758
GIDI + V+ ++ + + GR RA + +I Y E
Sbjct 309 ARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKLLGKIKRYTE 368
Query 759 KMMNDSILR 767
+++ IL
Sbjct 369 EILKARILA 377
>sp|Q4WIN6|DBP5_ASPFU ATP-dependent RNA helicase dbp5 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp5 PE=3 SV=2
Length=489
Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 41/231 (18%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ Q E ++ ++ + D ++ K L + Y L +I+FV+TRA
Sbjct 280 ANEITLQHEELTVEGIKQLYLDCADGEDKYRTLVQL----YGLLTVGSSIIFVQTRAAAQ 335
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + G + + I+D F+ G+ +LIAT+V
Sbjct 336 EIERRMTAE------------GHTVVSLTGERDPSVRDAIIDQFRR-GEAKVLIATNVLA 382
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID++ ++VI Y+ + I GR G +++
Sbjct 383 RGIDVSTVSMVINYDIPELHQPNVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNRE-- 440
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
E E +N + N I R+ T D + I +K I++S+ PK
Sbjct 441 -EWEMLNQIQ-TYFNCEIQRVDTKDWDEVEDII------KKTIKNSRANPK 483
>sp|B6EPA4|RHLB_ALISL ATP-dependent RNA helicase RhlB OS=Aliivibrio
salmonicida (strain LFI1238) OX=316275 GN=rhlB PE=3 SV=1
Length=434
Score = 90.2 bits (222), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/218 (19%), Positives = 74/218 (34%), Gaps = 20/218 (9%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E E + + ++ + PSN++ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMQEPEHVVVEPDQKTGHLITEELFYPSNDH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + G+ + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHK----CELVWGHLAADKHRVGLLTG--------DVPQKKRERILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSN 744
G+ +IL+AT VA G+ I Q V ++ + GR G
Sbjct 303 TKGEVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGESGNSISFACE 362
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
I I Y E + S E + L
Sbjct 363 EYAINLPAIEEYIEHSIPQSDYDTSALLEDLPAPIRLQ 400
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 6/133 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIP 301
Q + + G++ A TG GKT L +HL P + K+ + A
Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLAATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q + G + G + I DI+I T +++ K+G I
Sbjct 96 LAIQIYNDAESLIASTGLKAALAYGGERYEKQQKVIEAGVDILIGTTGRIIDFYKQGQID 155
Query 362 SLSIFTLMIFDEC 374
+ +++ DE
Sbjct 156 FKA-IQVVVLDEA 167
>sp|A8GZJ0|RHLB_SHEPA ATP-dependent RNA helicase RhlB OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=rhlB
PE=3 SV=1
Length=436
Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 72/196 (37%), Gaps = 16/196 (8%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ K L+ L +++ + ++ E E S + P +
Sbjct 181 FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSM 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + + +W+EG+ + G+LTG
Sbjct 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGH----RAGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F GD +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRLRILEQF-TKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSN 744
GR +G
Sbjct 348 GRAGQKGVSVSFACEE 363
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P Q + + + A + Q
Sbjct 44 LEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + G +V + G V + + + DI+I T +++ +++G I +S +
Sbjct 104 ANLLAKHTGLKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVIN-VSCIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA
OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA
PE=3 SV=1
Length=467
Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/322 (18%), Positives = 117/322 (36%), Gaps = 35/322 (11%)
Query 482 TESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVFQMPDKDEESRICK- 536
T LA ++ ++L + ++ +G Q E+ I ++K V I +
Sbjct 79 TRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRG 138
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN----VRAAGFDEIEQDLTQRFEE 592
L L H ++A + ++D L + + +A + + + +RF
Sbjct 139 TLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMN 198
Query 593 KLQELESVSRDPSNENPKLEDLC-------FILQEEYHLNPETITILFVKTRALVDALKN 645
+ + ++ +++ + N + L IL + + I+F +T+ VD L
Sbjct 199 EPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAE 258
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ L G + ++ + +L FK G IL+AT VA G+D
Sbjct 259 ALN------------LRGYAAEGIHGDLSQAKRLSVLRKFK-EGAIEILVATDVAARGLD 305
Query 706 IAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
I+ V ++ + + GR G +T K KM
Sbjct 306 ISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTKRKMER 365
Query 763 DSILRLQTWDEAVFREKILHIQ 784
++ T DEA+ ++ + I+
Sbjct 366 ---MKPPTLDEALEGQQRIAIE 384
Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 48/121 (40%), Gaps = 3/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+++ K+ I A TG GKT + + + + + A + Q K
Sbjct 36 SLQNKDVIGQAQTGTGKTAAFGIPIVEKVN--VKNSAVQALVVAPTRELAIQVSEELYKI 93
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
RV I G + + ++ +I+ TP +++++ +GT+ L ++ DE
Sbjct 94 GAVKRVRVLPIYGGQDIERQIRALKKHPHVIVGTPGRIIDHINRGTL-RLEHVHTVVLDE 152
Query 374 C 374
Sbjct 153 A 153
>sp|B0TJ29|RHLB_SHEHH ATP-dependent RNA helicase RhlB OS=Shewanella
halifaxensis (strain HAW-EB4) OX=458817 GN=rhlB PE=3 SV=1
Length=436
Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 13/186 (7%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ K L+ L +++ + ++ E E S + P +
Sbjct 181 FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSM 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + + +W+EG+ + G+LTG
Sbjct 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGH----RAGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
+ + IL+ F G+ +IL+AT VA G+ IA + V Y+ + + GR
Sbjct 289 DVPQKKRLRILEQF-TKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRT 347
Query 732 RARGSK 737
G K
Sbjct 348 GRAGQK 353
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 53/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P Q + + + A + Q
Sbjct 44 LEKKDIAGQAQTGTGKTLAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + G +V + G V + + + DI+I T +++ +++G I +S +
Sbjct 104 ANLLAKHTGLKVGIVYGGEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVIN-VSCIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q4IJH1|DBP3_GIBZE ATP-dependent RNA helicase DBP3 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP3 PE=3 SV=1
Length=581
Score = 91.0 bits (224), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 25/190 (13%)
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-IT 630
S + +E R + ++ LE K L +L+E + +
Sbjct 369 SGGKETAGGAVELQANARISQSVEVLEP--------RGKEFRLLEVLKEHQQGSKKNDRI 420
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
++F + ++N++ + GI G + + + L+AFK SG
Sbjct 421 LVFCLYKKEATRIENFLS--------RKGIRVG----GIHGDLRQEQRTRSLEAFK-SGQ 467
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
+L+AT VA G+DI + LVI + + I GR G T
Sbjct 468 TPVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKTGQAITFFTVEDKS 527
Query 748 IEKEQINMYK 757
+N+ +
Sbjct 528 HSGSLVNILR 537
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/185 (18%), Positives = 62/185 (34%), Gaps = 18/185 (10%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCP----PSEVSDTNLYSPFKPRNYQLE 249
++ D + + T + + + P L + P + + PF
Sbjct 143 EIHITDPKTENVTLRPVLEFHQLPATNLLEKKPSPFANYKAPTPIQSASWPFT------- 195
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+ G++ I A TG GKT L C + K V + + Q
Sbjct 196 -----LSGRDVIGVAETGSGKTMAFALPCVEAISALKHKHT-KAVVVSPTRELAMQTYEQ 249
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + + + G +++ + DII+ TP L + + GT+ LS
Sbjct 250 MASVAALNRMKCVCLYGGASKDDQRNLLNRGADIIVATPGRLKDFMSDGTVD-LSHSAFA 308
Query 370 IFDEC 374
+ DE
Sbjct 309 VLDEA 313
>sp|P0DMI1|HELS_ARCFU ATP-dependent DNA helicase Hel308 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628
/ NBRC 100126 / VC-16) OX=224325 GN=hel308 PE=1 SV=1
Length=691
Score = 91.4 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 70/167 (42%), Gaps = 17/167 (10%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E GKN ++ PT GKT ++ + + GK ++ + ++
Sbjct 30 QAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE-----AIKGGKSLYVVPLRALAGEK 84
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F K +E+ G R+ +G ++ + + DII+ T + ++L + +
Sbjct 85 YESFKK-WEKIGLRIGISTGDYESR---DEHLGDCDIIVTTSEK-ADSLIRNRASWIKAV 139
Query 367 TLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ ++ DE H ++ K+ I+ + + +VIGL+A+
Sbjct 140 SCLVVDEIHLLDSEKRGATLEILVTKMRRM-----NKALRVIGLSAT 181
Score = 37.5 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 18/97 (19%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+E N K +G + G+ ++ + DAF+ G+ +++AT G++
Sbjct 279 ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR-GNIKVVVATPTLAAGVN 337
Query 706 IAQCNLVI----LYEYVGNVIK---MIQTRGRGRARG 735
+ +++ ++ IK Q GR G
Sbjct 338 LPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374
>sp|A8G0U0|RHLB_SHESH ATP-dependent RNA helicase RhlB OS=Shewanella
sediminis (strain HAW-EB3) OX=425104 GN=rhlB PE=3 SV=1
Length=435
Score = 89.8 bits (221), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 122/342 (36%), Gaps = 43/342 (13%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVF----QMPDKD 529
+M T LA +I KD + L++ + +G + YE + K +
Sbjct 89 IMAPTRELAIQIAKDADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDY 148
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
I + L + + + ++ + D S + + + +
Sbjct 149 VRQGIINVSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSATLSMKVQEL 208
Query 590 FEEKLQELESVSRDPSNENPKL-----------EDLCFILQEEYHLNPETITILFVKTRA 638
+ + E E V P+ + K E + +L P+ I+F T+
Sbjct 209 AYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMDEKMRLLLTLLEEDWPD-KAIVFSNTKH 267
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ L +W+EG+ + G+LTG + + IL+ F G ++L+AT
Sbjct 268 SCEKLWSWLEGDGH----RVGLLTG--------DVPQKKRIRILELF-TEGKLDVLVATD 314
Query 699 VADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM 755
VA G+ I+ + V Y+ + + I GR +G E+ +N+
Sbjct 315 VAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSF------ACEEYALNL 368
Query 756 -YKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
E+ +N +I EA+ + ++ H K Q +
Sbjct 369 PAIEEYINHTIPVTNYDSEALLDDIPAPVRVHRKHNSRPQGR 410
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G +V + G + V + + + DI+I T +++ +++G I +S +
Sbjct 104 ADLLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGIIN-VSAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q59W52|PRP28_CANAL Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
OX=237561 GN=PRP28 PE=3 SV=2
Length=581
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/372 (16%), Positives = 114/372 (31%), Gaps = 54/372 (15%)
Query 383 YNMIMFNYLDQKLGGSSGPLPQVIGLT---ASVGVGDAKNTDEALDYICKLCASLDASVI 439
Y + + + S+ P+ ++ T A +A+ + L Y
Sbjct 229 YILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGGHHYQD 288
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
K + + +V P + +E +I D K + + KDL
Sbjct 289 TINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDL------ 342
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
N+ E+ + + +F + + +KY
Sbjct 343 -NKVLDKLPTEKQLSSTIDG-RIFHLEKRSTMMFTATISPTVEKLTKKYLIDPGYLYIGG 400
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ALD + F + +A + K L I++
Sbjct 401 AGEALDNISQSFEFLSSATTEAT---------------------------KFNKLIKIIR 433
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ + + I+F + + D+L + N + + G +Q+ ++
Sbjct 434 SHWRVTENPLIIIFANFKHVCDSLSQELSSNDINN------VVIHGSKSQDM------RE 481
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGS 736
+ F+ + +LIAT VA GIDI LVI Y+ V I I GR G
Sbjct 482 QAITNFRNH-ESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGE 540
Query 737 KCFLLTSNAGVI 748
++ I
Sbjct 541 SFTFISDQDTEI 552
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (45%), Gaps = 10/130 (8%)
Query 254 AMKGKNTIICAPTGCGKT---FVSLL-----ICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
A+K ++ + A TG GKT + +L I E++LK + + A + Q
Sbjct 202 ALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQ 261
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLS 364
K+ ++ GY+V I G + +I + +I+ TP LV+++++ +
Sbjct 262 ITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSK 321
Query 365 IFTLMIFDEC 374
+ L + DE
Sbjct 322 CYCL-VMDEA 330
>sp|Q12S35|RHLB_SHEDO ATP-dependent RNA helicase RhlB OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
OX=318161 GN=rhlB PE=3 SV=1
Length=432
Score = 89.5 bits (220), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 74/182 (41%), Gaps = 16/182 (9%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE---KLQELESVSRDPSNENPKLEDLC 615
RM DA L FS + E+ D E+ +E S + P ED
Sbjct 185 RMPDASSRLNMLFSATLSMKVQELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLMEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ IL+ F SGD ++L+AT VA G+ I+ + V Y+ + + GR G
Sbjct 293 KKRIRILEQF-TSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 736 SK 737
+K
Sbjct 352 NK 353
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+K K+ A TG GKT L+ +HL P Q + + A + Q
Sbjct 44 LKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + G +V + G + V E + + DI+I T +++ +++G I SL+ +
Sbjct 104 ANLLAKHTGLKVGIVYGGESYEVQREVLDKGVDILIGTTGRIIDYVRQGVI-SLNSIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9, mitochondrial
OS=Arabidopsis thaliana OX=3702 GN=RH9 PE=1 SV=1
Length=610
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/136 (23%), Positives = 51/136 (38%), Gaps = 14/136 (10%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
I+F +T+ D L + K L G ++ ++ L
Sbjct 357 EHGKGGKCIVFTQTKRDADRLAFGLA-----KSYKCEALHG--------DISQAQRERTL 403
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F+ G+ +IL+AT VA G+D+ +LVI YE N + GR G K +
Sbjct 404 AGFR-DGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAIL 462
Query 743 SNAGVIEKEQINMYKE 758
+ + + KE
Sbjct 463 IHGQDQTRAVKMIEKE 478
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/132 (22%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF----PQGQKGKVVFFANQIPV 302
Q + PAM+G++ I A TG GKT + + KF +G+ + + A +
Sbjct 143 QKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTREL 202
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + F + + G T + ++ D+ + TP +++ +K+G +
Sbjct 203 ARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALN- 259
Query 363 LSIFTLMIFDEC 374
LS ++ DE
Sbjct 260 LSEVQFVVLDEA 271
>sp|Q8XA87|DEAD_ECO57 ATP-dependent RNA helicase DeaD OS=Escherichia
coli O157:H7 OX=83334 GN=deaD PE=3 SV=3
Length=629
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 36/259 (14%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP--------KLEDLCF 616
+ + + +A E + +T+RF ++ QE+ SV+ P K E L
Sbjct 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+FV+T+ + +E N G N M
Sbjct 239 FLEAEDFDA----AIIFVRTKNATLEVAEALERN------------GYNSAALNGDMNQA 282
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ L+ K G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R
Sbjct 283 LREQTLERLK-DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341
Query 735 GSKCFLLTSNA-----GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+ L N IE+ E + ++ L L F K+
Sbjct 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL-LGKRRLEKFAAKVQQQLESSDL 400
Query 790 IRDSQEKPKPVPDKENKKL 808
+ K P E ++L
Sbjct 401 DQYRALLSKIQPTAEGEEL 419
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/136 (26%), Positives = 62/136 (46%), Gaps = 8/136 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLAPTRE 85
Query 302 VYEQQKSV---FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q FSK+ G V + G +V + + + I++ TP L+++LK+G
Sbjct 86 LAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query 359 TIPSLSIFTLMIFDEC 374
T+ LS + ++ DE
Sbjct 144 TLD-LSKLSGLVLDEA 158
>sp|Q54VT4|DDX47_DICDI Probable ATP-dependent RNA helicase ddx47
OS=Dictyostelium discoideum OX=44689 GN=ddx47 PE=3 SV=1
Length=546
Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/151 (26%), Positives = 60/151 (40%), Gaps = 20/151 (13%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L +IL E +TI+F T A + + G G N
Sbjct 348 YLAYILNEL----AGNLTIIFTSTCASSTKIAMMLRN------------LGFGAIPINGD 391
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
M + L+ FK G +IL+AT VA G+DI +LVI Y+ N + + GR
Sbjct 392 MDQGKRLASLNKFK-QGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTA 450
Query 732 RARGS--KCFLLTSNAGVIEKEQINMYKEKM 760
RA S ++T + + + K+K+
Sbjct 451 RAGNSGRAITIVTQYDVEMYQRIEFVLKKKL 481
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 2/146 (1%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
P + N KP+ Q E A+KG++ I A TG GKT ++ L + PQG
Sbjct 128 PQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQG 187
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
+ A + Q F+ G + + G + + +++ +P
Sbjct 188 LF--CLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKPHVVVGSP 245
Query 349 QILVNNLKKGTIPSLSIFTLMIFDEC 374
++++L+ +L I DE
Sbjct 246 GRVLHHLEHTKGFNLRSIKYFIMDEA 271
>sp|P0A9P8|DEAD_SHIFL ATP-dependent RNA helicase DeaD OS=Shigella
flexneri OX=623 GN=deaD PE=3 SV=2
Length=629
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 36/259 (14%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP--------KLEDLCF 616
+ + + +A E + +T+RF ++ QE+ SV+ P K E L
Sbjct 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+FV+T+ + +E N G N M
Sbjct 239 FLEAEDFDA----AIIFVRTKNATLEVAEALERN------------GYNSAALNGDMNQA 282
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ L+ K G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R
Sbjct 283 LREQTLERLK-DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341
Query 735 GSKCFLLTSNA-----GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+ L N IE+ E + ++ L L F K+
Sbjct 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL-LGKRRLEKFAAKVQQQLESSDL 400
Query 790 IRDSQEKPKPVPDKENKKL 808
+ K P E ++L
Sbjct 401 DQYRALLSKIQPTAEGEEL 419
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/136 (26%), Positives = 62/136 (46%), Gaps = 8/136 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLAPTRE 85
Query 302 VYEQQKSV---FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q FSK+ G V + G +V + + + I++ TP L+++LK+G
Sbjct 86 LAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query 359 TIPSLSIFTLMIFDEC 374
T+ LS + ++ DE
Sbjct 144 TLD-LSKLSGLVLDEA 158
>sp|P0A9P6|DEAD_ECOLI ATP-dependent RNA helicase DeaD OS=Escherichia
coli (strain K12) OX=83333 GN=deaD PE=1 SV=2
Length=629
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 36/259 (14%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP--------KLEDLCF 616
+ + + +A E + +T+RF ++ QE+ SV+ P K E L
Sbjct 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+FV+T+ + +E N G N M
Sbjct 239 FLEAEDFDA----AIIFVRTKNATLEVAEALERN------------GYNSAALNGDMNQA 282
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ L+ K G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R
Sbjct 283 LREQTLERLK-DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341
Query 735 GSKCFLLTSNA-----GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+ L N IE+ E + ++ L L F K+
Sbjct 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL-LGKRRLEKFAAKVQQQLESSDL 400
Query 790 IRDSQEKPKPVPDKENKKL 808
+ K P E ++L
Sbjct 401 DQYRALLSKIQPTAEGEEL 419
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/136 (26%), Positives = 62/136 (46%), Gaps = 8/136 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLAPTRE 85
Query 302 VYEQQKSV---FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q FSK+ G V + G +V + + + I++ TP L+++LK+G
Sbjct 86 LAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query 359 TIPSLSIFTLMIFDEC 374
T+ LS + ++ DE
Sbjct 144 TLD-LSKLSGLVLDEA 158
>sp|P0A9P7|DEAD_ECOL6 ATP-dependent RNA helicase DeaD OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310
GN=deaD PE=3 SV=2
Length=629
Score = 90.6 bits (223), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 36/259 (14%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP--------KLEDLCF 616
+ + + +A E + +T+RF ++ QE+ SV+ P K E L
Sbjct 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+FV+T+ + +E N G N M
Sbjct 239 FLEAEDFDA----AIIFVRTKNATLEVAEALERN------------GYNSAALNGDMNQA 282
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ L+ K G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R
Sbjct 283 LREQTLERLK-DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341
Query 735 GSKCFLLTSNA-----GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+ L N IE+ E + ++ L L F K+
Sbjct 342 AGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL-LGKRRLEKFAAKVQQQLESSDL 400
Query 790 IRDSQEKPKPVPDKENKKL 808
+ K P E ++L
Sbjct 401 DQYRALLSKIQPTAEGEEL 419
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/136 (26%), Positives = 62/136 (46%), Gaps = 8/136 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +L P+ + +++ A
Sbjct 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLD--PELKAPQILVLAPTRE 85
Query 302 VYEQQKSV---FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q FSK+ G V + G +V + + + I++ TP L+++LK+G
Sbjct 86 LAVQVAEAMTDFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query 359 TIPSLSIFTLMIFDEC 374
T+ LS + ++ DE
Sbjct 144 TLD-LSKLSGLVLDEA 158
>sp|Q0UN57|PRP5_PHANO Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) OX=321614 GN=PRP5 PE=3 SV=2
Length=1184
Score = 91.4 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 13/177 (7%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E + R + + + ++ P + K+ L L + + + ++F + + +
Sbjct 752 AEVIIGGRSKVAPEITQHITIVPPSYEKKIAKLLHHLGQTFSDDENAQVLIFTERQETAE 811
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L + + K + + ++ FK G NILIATSVA
Sbjct 812 DLLSKL--------FKAKYF---AVNTIHGAKDQTDRNEAINEFK-QGLLNILIATSVAA 859
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
G+D+ LV ++ ++ + GR GRA + E+ +++ K
Sbjct 860 RGLDVPGLALVYNFDCPTHLEDYVHRCGRTGRAGNKGLAVTLIENPGQERFAVHIVK 916
Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/194 (19%), Positives = 65/194 (34%), Gaps = 14/194 (7%)
Query 192 IKDVETEDLED-KMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLE 249
I + ED+ D + E I++ + P + D + +P Q +
Sbjct 514 ITQMSAEDVADLRHELDGIKVKPDDVPRPVTKWAQMGLLQQTMDVFTRVGYARPTAIQAQ 573
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK--GKV-VFFANQIPVYEQQ 306
A G++ I A TG GKT + H+ + G + + A + Q
Sbjct 574 AIPIAESGRDLIGVAKTGSGKTLAFGIPMIRHVLDQRPLKPADGPIGLILAPTRELSLQI 633
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK--KGTI 360
+ + G + G +QI I+ T L++ L+ G +
Sbjct 634 VNELKPFLNASGITIKCAYGG---QPISDQIAMIKRGGIHILCATAGRLIDLLQSNSGRV 690
Query 361 PSLSIFTLMIFDEC 374
S T ++ DE
Sbjct 691 LSFRRITYVVLDEA 704
>sp|Q2NQB2|RHLB_SODGM ATP-dependent RNA helicase RhlB OS=Sodalis
glossinidius (strain morsitans) OX=343509 GN=rhlB PE=3 SV=1
Length=415
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 22/182 (12%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
L Y + + +E + Q+ ++QE + K+ L +++EE+
Sbjct 200 TLSYRVRELAFEHMNNAEYVEVEPLQKTGHRIQEELFYPSNEE----KMRLLQTLIEEEW 255
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
I+F T+ + + G+ + G+LTG ++ + IL
Sbjct 256 PD----RCIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVSQKRRLRIL 299
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
+ F G +IL+AT VA G+ I V Y+ + + GR GRA S C +
Sbjct 300 EKF-TQGALDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGCSIS 358
Query 742 TS 743
+
Sbjct 359 LA 360
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 50/125 (40%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
+ GK+ A TG GKT L HHL P Q + + + A + Q S
Sbjct 44 LAGKDVAGQAQTGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRALIMAPTRELAVQIHSD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G ++ G + ++ + DI++ T L++ K+ + +S ++
Sbjct 104 AEPLAQATGLKMGLAYGGDGYDKQLKVLEAGVDILVGTTGRLIDYTKQNYVN-MSAIQVV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A5E1W4|DBP3_LODEL ATP-dependent RNA helicase DBP3 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP3 PE=3 SV=2
Length=535
Score = 89.8 bits (221), Expect = 3e-17, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 76/202 (38%), Gaps = 25/202 (12%)
Query 561 KDALDYLKDFFSN-VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
K+ + +F + V+ D E +R + ++ L ++ K + L +LQ
Sbjct 313 KEVRELANNFMNQPVKVTIGDRDELSANKRITQIVEVL-------DDKFQKEKKLINLLQ 365
Query 620 EEYHL-NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ + N + ++F + +++ + + K + G ++ +
Sbjct 366 KYQNTGNGDNKILVFALYKKEASRIESLL----HRNKFKVAAIHG--------DLSQQQR 413
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARG 735
L +FK SG+ N+L+AT VA G+DI VI + + + GR G
Sbjct 414 TQALQSFK-SGECNLLLATDVAARGLDIPNVKYVINLTFPLTIEDYVHRLGRTGRAGQTG 472
Query 736 SKCFLLTSNAGVIEKEQINMYK 757
T + + N+ +
Sbjct 473 IAHTFFTEDEKHLSGALCNILR 494
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 2/120 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ + A TG GKTF + +++ V+ + + Q
Sbjct 161 LDGKDVVGVAETGSGKTFAFGVPAINNIITSKNKDLS-VLCISPTRELALQIYDNLEDLT 219
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I G +++ +++I ++++ TP LV+ + G + LS ++ DE
Sbjct 220 RGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVD-LSSINYLVLDEA 278
>sp|A3GH91|DBP5_PICST ATP-dependent RNA helicase DBP5 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP5 PE=3 SV=2
Length=500
Score = 89.8 bits (221), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 63/167 (38%), Gaps = 26/167 (16%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ E + ++ + D +E K E LC E Y L +I+FV+ + + L
Sbjct 312 LKQEELNVDGIKQLYMDCDSEKHKFEVLC----ELYGLLTIGSSIIFVERKDTANLLYAK 367
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + G+ + ++D F+ G +LI T+V GIDI
Sbjct 368 MKAE------------GHACSILHGGLETSERDRLIDDFR-EGRSKVLITTNVLARGIDI 414
Query 707 AQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLLTSN 744
A ++V+ Y+ + I GR G +
Sbjct 415 ASVSMVVNYDLPTDKDGNADPSTYLHRIGRTGRFGRVGVSISFIYDK 461
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/117 (19%), Positives = 43/117 (37%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + P+ + + A + Q V S
Sbjct 150 RNMIGQSQSGTGKTAAFSLTMLS--RVDPKVPSTQCLCLAPTRELARQTLEVISTM---- 203
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + N II+ TP I+++ +++ I ++ + + DE
Sbjct 204 GKFTNITTQLIVPDALPRGSSTNAHIIVGTPGIVMDLIRRKQIN-VNGVKVFVLDEA 259
>sp|Q4I662|DBP8_GIBZE ATP-dependent RNA helicase DBP8 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP8 PE=3 SV=1
Length=547
Score = 90.2 bits (222), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/204 (21%), Positives = 73/204 (36%), Gaps = 19/204 (9%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L L E +++ ILF + D L + + + T+
Sbjct 356 KEHYLHTFLLTEANVDKT--VILFCNRTSTADYLHHLLR------------MLEHRVTSL 401
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++ + + L F+AS IL+AT VA G+DI + +LVI Y+ + I G
Sbjct 402 HSKLPQRQRIDNLARFRAS-AARILVATDVAARGLDIPEVSLVINYDLPRDPDDYIHRVG 460
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE--KILHIQT 785
R RA R + V I + M + V R+ K++ +
Sbjct 461 RTARAGRKGEAVSFVGQRDVELALTIEKRVGRDMEAWEEEGVNLETRVVRDALKLVSEKK 520
Query 786 HEKFIRDSQEKPKPVPDKENKKLL 809
E + + + K K+ L
Sbjct 521 REALLEVEEGREVGGKRKRTKQKL 544
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 51/161 (32%), Gaps = 5/161 (3%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
S P V + +P Q +KG++ I + TG GKT +
Sbjct 113 DPNTTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAV 172
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
+ P V + Q F + ++G + +
Sbjct 173 PILQKWSEDPTAIFA--VVLTPTRELALQIFEQFKAISSPQSLKAILVTGGSDMRTQAIE 230
Query 337 IVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
I + +II TP L ++++ TI L ++ DE
Sbjct 231 IGKRPHVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEA 271
>sp|B8CHZ1|RHLB_SHEPW ATP-dependent RNA helicase RhlB OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) OX=225849 GN=rhlB
PE=3 SV=1
Length=437
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/196 (20%), Positives = 73/196 (37%), Gaps = 16/196 (8%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ K L+ L +++ + ++ E E S + P +
Sbjct 181 FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSM 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + + +W+EG+ + G+LTG
Sbjct 241 EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F SGD ++L+AT VA G+ IA + V Y+ + + I
Sbjct 289 DVPQKKRLRILEQF-TSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSN 744
GR +G
Sbjct 348 GRAGQKGVSVSFACEE 363
Score = 59.8 bits (143), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L+ +HL + K+ + A + Q + + G +
Sbjct 55 TGTGKTLAFLVATFNHLLTEAAPTERKINQPRAIIMAPTRELAIQIAKDANLLAKHTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V + G + + + DI+I T +++ +++G I +S ++ DE
Sbjct 115 VGIVYGGEGYEAQRKVLDKGIDILIGTTGRIIDYVRQGVID-VSAIQAVVLDEA 167
>sp|C4K8M8|RHLB_HAMD5 ATP-dependent RNA helicase RhlB OS=Hamiltonella
defensa subsp. Acyrthosiphon pisum (strain 5AT) OX=572265
GN=rhlB PE=3 SV=1
Length=422
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 81/215 (38%), Gaps = 20/215 (9%)
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
Q+ DE R+ + +R + +E L + +
Sbjct 159 LQVIVLDEADRMY--DLGFIKDIRWLFRRMPPAEKRLNMLFSATLSYRVRELSFEQMNHP 216
Query 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDA 642
E + ++ +++ PSNE+ K+ L +++EE+ I+F T+ +
Sbjct 217 EYIEVEPLQKIGSQIQEELFYPSNED-KMRLLQTLIEEEWPD----RCIIFANTKQRCED 271
Query 643 LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
+ G+ + G+LTG + + ILD F + G +IL+AT VA
Sbjct 272 I----WGHLVADGHRVGLLTG--------DVAQRKRIQILDDF-SKGYLDILVATDVAAR 318
Query 703 GIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
G+ I + V Y+ NV I GR G K
Sbjct 319 GLHIPKVTHVFNYDLPENVEDYIHRIGRTGRAGEK 353
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/125 (17%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT F++ + + + + Q ++ + + + Q +
Sbjct 44 LAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ ++ G + ++ + DI+I TP +++ K+ I L+ ++
Sbjct 104 AETLSQFTSLKMGLAYGGDGYDKQLKILESGVDILIGTPGRIIDYAKQNFIH-LNALQVI 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q3ZBV2|DD19A_BOVIN ATP-dependent RNA helicase DDX19A OS=Bos
taurus OX=9913 GN=DDX19A PE=2 SV=1
Length=478
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/223 (19%), Positives = 76/223 (34%), Gaps = 30/223 (13%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+M +D + +R EE L ++ ++ + K + LC I
Sbjct 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQALCNI- 326
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
Y ++F TR L + G + M + +
Sbjct 327 ---YGAITIAQAMIFCHTRKTASWLAAELSKE------------GHQVALLSGEMVVEQR 371
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---------GNVIKMIQTRG 729
+++ F+ G +L+ T+V GID+ Q ++VI ++ + I G
Sbjct 372 AAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 430
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R RG ++ S + +N +E N I RL T D
Sbjct 431 RFGKRGLAVNMVDSKHSM---NILNRIQEH-FNKKIERLDTDD 469
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L ++ P + + + + + Q V + +
Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVE--PAERYPQCLCLSPTYELALQTGKVIEQ-MGKF 187
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + Q + + I+I TP +++ K + + DE
Sbjct 188 HPELKLAYAVRGNKLERGQKISEH-IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 243
>sp|Q4P7Z8|DBP5_USTMA ATP-dependent RNA helicase DBP5 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP5 PE=3 SV=1
Length=456
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/210 (21%), Positives = 75/210 (36%), Gaps = 30/210 (14%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ ++ E ++ ++ D +E+ K E +L E Y+L +I+F R D
Sbjct 261 ANEIRLKQEELSVEGIKQFYMDCKDEDHKYE----VLVELYNLLTIGQSIIFCAKRETAD 316
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
+ + G + + + + +DAF+ G +LI+T+V
Sbjct 317 RIAQKMTQE------------GHKVDSLHGRLETADRDRTIDAFR-DGKSKVLISTNVIA 363
Query 702 EGIDIAQCNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQ 752
GIDI Q LVI Y+ + I GR +G + +Q
Sbjct 364 RGIDIQQVTLVINYDMPLTQTGEADAETYLHRIGRTGRFGRKGVSINFVHDQQSWSYMDQ 423
Query 753 INMYKEKMMNDSILRLQTWDEAVFREKILH 782
I EK + I R+ T D I
Sbjct 424 I----EKALKCQITRVATNDLEEMEYTIKE 449
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/190 (17%), Positives = 60/190 (32%), Gaps = 15/190 (8%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL--EL 250
KDV +L + + + Q+ L + NL YQ ++
Sbjct 31 KDVAESNLRESSHEVQVTLADQQADPNSPLYSAKSFEALGLHENLLKGIYAMKYQKPSKI 90
Query 251 ALPAMK------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
A+ KN I + +G GKT +L + Q K + + A +
Sbjct 91 QEKALPLLLQNPPKNMIGQSQSGTGKTAAFILTMLSRIDYDLQ--KPQAIALAPSRELAR 148
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q ++ + T + + +II TP + +K I + +
Sbjct 149 Q-IMDVARTMSKFTNVTTCLCLPDEVKRGEKITA---QLIIGTPGKTFDMIKSKGIDT-A 203
Query 365 IFTLMIFDEC 374
+ + DE
Sbjct 204 AIKVFVLDEA 213
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC694.02
PE=3 SV=1
Length=1717
Score = 91.0 bits (224), Expect = 3e-17, Method: Composition-based stats.
Identities = 62/284 (22%), Positives = 104/284 (37%), Gaps = 40/284 (14%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELA 251
+ D+E E+ + ++ + E S S P S V+ F P +Q E
Sbjct 692 LPDLEDEEFDLEVPYTSPTFQLLHFGEYMERSMGSAPDSRVA-------FDPDEWQRETL 744
Query 252 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ ++ + APT GKTF+S E L+ G V++ A + Q +
Sbjct 745 DILDRDESVFVVAPTSSGKTFISFYAMEKVLRD---NDDGVVIYVAPTKALVNQLSAEVY 801
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENN----DIIILTPQILVN-----NLKKGTIPS 362
F +H G T +V NN ++I P +L + L P
Sbjct 802 ARFNKHYPHA----GQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALANAWCPK 857
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ IFDE H Q M + L ++ P P ++ L+A+VG N E
Sbjct 858 IRRI---IFDEIH-CIGQ------MEDGLVEEQLLLLAPCP-IVALSATVG-----NPQE 901
Query 423 ALDYICKLCASLDASVIATVKHNL-EELEQVVYKPQKFFRKVES 465
++ L + + V + +L + VY K F ++
Sbjct 902 FQVWLSALQRAHSYPIHLIVHEHRYSDLRKFVYGGAKEFNGLQE 945
>sp|P34580|DDX47_CAEEL Putative ATP-dependent RNA helicase T26G10.1
OS=Caenorhabditis elegans OX=6239 GN=T26G10.1 PE=3 SV=1
Length=489
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/255 (18%), Positives = 84/255 (33%), Gaps = 27/255 (11%)
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
+I R + S + A + + + + L+ N+ K
Sbjct 214 VIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKY-KET 272
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L ++L E I+F T A + + G +
Sbjct 273 YLVYLLNEH----AGNSAIVFCATCATTMQIAVMLRQ------------LGMQAVPLHGQ 316
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
M+ + L+ FK+ IL+ T VA G+DI ++VI Y+ + GR
Sbjct 317 MSQEKRLGSLNKFKSKARE-ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTA 375
Query 732 RARGSKCFLLTSNAGVIEKEQ---INMYKEK-----MMNDSILRLQTWDEAVFREKILHI 783
RA S + +E Q N+ K+ + N+ ++ ++ EA +I
Sbjct 376 RAGRSGIAITVVTQYDVEAYQKIEANLGKKLDEYKCVENEVMVLVERTQEATENARIEMK 435
Query 784 QTHEKFIRDSQEKPK 798
+ EK + +
Sbjct 436 EMDEKKKSGKKRRQN 450
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query 235 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVV 294
KP Q A++GK+ I A TG GKT + L PQ +
Sbjct 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQ--AFFCL 116
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ Q F G I G + II+ TP LV++
Sbjct 117 VLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRPHIIVATPGRLVDH 176
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L+ +L +I DE
Sbjct 177 LENTKGFNLKALKFLIMDEA 196
>sp|A4STJ7|RHLB_AERS4 ATP-dependent RNA helicase RhlB OS=Aeromonas
salmonicida (strain A449) OX=382245 GN=rhlB PE=3 SV=1
Length=429
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/297 (17%), Positives = 89/297 (30%), Gaps = 53/297 (18%)
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 547
R+ + RE Q Y + + E A+ +
Sbjct 80 RLVNQPRAIIMAPTRELAVQIYNDADTISASTGLKLGLAYGGEGYDKQLAVLEQGVDILI 139
Query 548 YNDALIIS-----------------EHARMKDALDYLKD--FFSNVRAAGFDEIEQDLTQ 588
II + A L ++KD F A + + +
Sbjct 140 GTTGRIIDYFKSKVIDLSNIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPTERLSMLFSA 199
Query 589 RFEEKLQELESVSRDPSNE---NPKLEDLCFILQEEYHLNPE---------------TIT 630
++QEL + P+ I +E ++ + E
Sbjct 200 TLSLRVQELAYEHMNHPEHVQIEPEQMTGIRIQEELFYPSNEDKMLLLLSLMEEEWPEKA 259
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F T+ + + + W+E + + G+LTG + + IL+ F G
Sbjct 260 IVFANTKHVCEDVHAWLENDGH----RVGLLTG--------DVPQKKRMKILEDF-TKGT 306
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+IL+AT VA G+ I V Y+ + + I GR G L +
Sbjct 307 LDILVATDVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACED 363
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 47/124 (38%), Gaps = 6/124 (5%)
Query 256 KGKNTIICAPTGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+G + A TG GKT F++ + H L + + + A + Q +
Sbjct 45 EGHDLAGQAQTGTGKTIAFLAATFNYLLTHPLSNPRLVNQPRAIIMAPTRELAVQIYNDA 104
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
G ++ G + + + + DI+I T +++ K I LS +++
Sbjct 105 DTISASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVID-LSNIQVVV 163
Query 371 FDEC 374
DE
Sbjct 164 LDEA 167
>sp|A1CYG5|DBP5_NEOFI ATP-dependent RNA helicase dbp5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp5
PE=3 SV=1
Length=489
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/231 (20%), Positives = 87/231 (38%), Gaps = 41/231 (18%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ Q E ++ ++ + D ++ K + L + Y L +I+FV+TRA
Sbjct 280 ANEITLQHEELTVEGIKQLYLDCADGEDKYKTLVQL----YGLLTVGSSIIFVQTRAAAQ 335
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + G + + I+D F+ G+ +LIAT+V
Sbjct 336 EIEKRMTAE------------GHTVVSLTGERDPSVRDAIIDQFRR-GEAKVLIATNVLA 382
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID++ ++VI Y+ + I GR G +++
Sbjct 383 RGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNRE-- 440
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
E E +N + N I R+ T D + I +K I++S+ PK
Sbjct 441 -EWEMLNQIQ-TYFNCEIQRVDTKDWDEVEDII------KKTIKNSRANPK 483
>sp|B1KQF6|RHLB_SHEWM ATP-dependent RNA helicase RhlB OS=Shewanella
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rhlB PE=3
SV=1
Length=441
Score = 89.1 bits (219), Expect = 3e-17, Method: Composition-based stats.
Identities = 53/298 (18%), Positives = 102/298 (34%), Gaps = 36/298 (12%)
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMVF- 523
+ A +M T LA +I KD L++ + +G + Y+ + K +
Sbjct 80 RQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGGESYDVQRKVLDKGVDILI 139
Query 524 ---QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
I + L + + + ++ + D S +
Sbjct 140 GTTGRIIDYVRQGIINLSAIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAKSRLNMLFSA 199
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKL-----------EDLCFILQEEYHLNPETI 629
+ + + + + E E V P+ + K E + +L PE
Sbjct 200 TLSMKVQELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDEKMRLLLSLIEEDWPE-K 258
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
I+F T+ + + +W+EG+ + G+LTG + + IL+ F G
Sbjct 259 AIVFSNTKHSCENVWSWLEGDGH----RVGLLTG--------DVPQKKRIRILEQF-TEG 305
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+IL+AT VA G+ I+ + V Y+ + + I GR +G
Sbjct 306 KLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEE 363
Score = 58.6 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ HL P Q + + + A + Q
Sbjct 44 LQKKDIAGQAQTGTGKTLAFLVATFDHLLSTPVPEGRQLNQPRAMIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + G +V + G + +V + + + DI+I T +++ +++G I LS +
Sbjct 104 ATLLAKHTGLKVGIVYGGESYDVQRKVLDKGVDILIGTTGRIIDYVRQGIIN-LSAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q6CT85|RRP3_KLULA ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=RRP3 PE=3 SV=1
Length=487
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 73/180 (41%), Gaps = 30/180 (17%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + TI+F +T+A + + N L T
Sbjct 294 KNTFLIYLLNEFIGKS----TIVFTRTKANAERISNLCN------------LLEFSATAL 337
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI ++VI Y+ + I G
Sbjct 338 HGDLNQNQRTGALDLFKA-GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVG 396
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R RA R K L S + E ++ + +L + E V ++ IL ++
Sbjct 397 RTARAGRSGKSISLVSQYDL----------ELILRIEDVLGKKLPKENVDKDAILALRDS 446
Score = 75.6 bits (184), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/186 (23%), Positives = 67/186 (36%), Gaps = 8/186 (4%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSD-----TNLYSPFKPRNYQL 248
+ D ED +++ E PE S ++ + KP Q
Sbjct 37 EPSPSD-EDSAQSNSKDSNSNEQPEESEEIFESFTELDLVPELIEACKNLNYNKPTPIQS 95
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
+ PA+KG + I A TG GKT + + L + Q A + +Q K
Sbjct 96 KAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQL--WHDQQPYYACILAPTRELAQQIKE 153
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
F G R T I G + ++ III TP L+++L+ +L
Sbjct 154 TFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHIIIATPGRLMDHLENTKGFNLRKLKY 213
Query 369 MIFDEC 374
++ DE
Sbjct 214 LVMDEA 219
>sp|Q9UMR2|DD19B_HUMAN ATP-dependent RNA helicase DDX19B OS=Homo
sapiens OX=9606 GN=DDX19B PE=1 SV=1
Length=479
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 42/223 (19%), Positives = 76/223 (34%), Gaps = 30/223 (13%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+M +D + +R EE L ++ S+ + K + LC +
Sbjct 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL- 327
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
Y ++F TR L + G + M + +
Sbjct 328 ---YGAITIAQAMIFCHTRKTASWLAAELSKE------------GHQVALLSGEMMVEQR 372
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---------GNVIKMIQTRG 729
+++ F+ G +L+ T+V GID+ Q ++VI ++ + I G
Sbjct 373 AAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 431
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R RG ++ S + +N +E N I RL T D
Sbjct 432 RFGKRGLAVNMVDSKHSM---NILNRIQEH-FNKKIERLDTDD 470
Score = 46.7 bits (109), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L ++ P + + + + + Q V + +
Sbjct 132 QNLIAQSQSGTGKTAAFVLAMLSQVE--PANKYPQCLCLSPTYELALQTGKVIEQ-MGKF 188
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + Q + I+I TP +++ K + + DE
Sbjct 189 YPELKLAYAVRGNKLERGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244
>sp|P96614|CSHA_BACSU DEAD-box ATP-dependent RNA helicase CshA
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshA PE=1 SV=2
Length=494
Score = 89.5 bits (220), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 78/224 (35%), Gaps = 28/224 (13%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ E E + E + ++ + E K + L +L + +PE + I+
Sbjct 192 RIAERFMTEPEHVKVKAKEMTVSNIQQFYLEV-QERKKFDTLTRLLDIQ---SPE-LAIV 246
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F +T+ VD L + L G + +T + L FK G
Sbjct 247 FGRTKRRVDELAEALN------------LRGYAAEGIHGDLTQAKRMVALRKFK-EGAIE 293
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVI- 748
+L+AT VA G+DI+ V ++ + + GR G +T +
Sbjct 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSML 353
Query 749 ------EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
K +++ KE +++++ Q R I +
Sbjct 354 RAIEQTTKRKMDRMKEPTLDEALEGQQQVTVERLRTTISENNLN 397
Score = 54.0 bits (128), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/128 (22%), Positives = 51/128 (40%), Gaps = 3/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + K+ I A TG GKT + K P+ + + A + Q
Sbjct 30 QAQTIPLGLSNKDVIGQAQTGTGKT--AAFGIPLVEKINPESPNIQAIVIAPTRELAIQV 87
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K + +V I G + + +N +II+ TP L++++ + TI L+
Sbjct 88 SEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRLLDHINRRTI-RLNNV 146
Query 367 TLMIFDEC 374
++ DE
Sbjct 147 NTVVMDEA 154
>sp|Q5E8U5|RHLB_ALIF1 ATP-dependent RNA helicase RhlB OS=Aliivibrio
fischeri (strain ATCC 700601 / ES114) OX=312309 GN=rhlB
PE=3 SV=2
Length=432
Score = 88.7 bits (218), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 87/241 (36%), Gaps = 22/241 (9%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E E + + ++ ++ PSN++ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ +++ G+ + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHKCESV----WGHLAADKHRVGLLTG--------DVPQKKRERILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSN 744
G+ +IL+AT VA G+ I Q V ++ + GR G
Sbjct 303 TQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACE 362
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
I I Y E + S E + L +Q + R + + +++
Sbjct 363 EYAINLPAIEEYIEHSIPQSDYDASALLEDLPAP--LRLQRRPQQNRRNNNGQRQGGNRK 420
Query 805 N 805
+
Sbjct 421 H 421
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 6/133 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIP 301
Q + + G++ A TG GKT L +HL P + K+ + A
Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q + G + G + I + DI+I T +++ K+G I
Sbjct 96 LAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHID 155
Query 362 SLSIFTLMIFDEC 374
+ ++ DE
Sbjct 156 FK-MIQAVVLDEA 167
>sp|B5FF87|RHLB_ALIFM ATP-dependent RNA helicase RhlB OS=Aliivibrio
fischeri (strain MJ11) OX=388396 GN=rhlB PE=3 SV=1
Length=432
Score = 88.7 bits (218), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/241 (18%), Positives = 87/241 (36%), Gaps = 22/241 (9%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E E + + ++ ++ PSN++ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPSNDH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ +++ G+ + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHKCESV----WGHLAADKHRVGLLTG--------DVPQKKRERILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSN 744
G+ +IL+AT VA G+ I Q V ++ + GR G
Sbjct 303 TQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACE 362
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
I I Y E + S E + L +Q + R + + +++
Sbjct 363 EYAINLPAIEEYIEHSIPQSDYDASALLEDLPAP--LRLQRRPQQNRRNNNGQRQGGNRK 420
Query 805 N 805
+
Sbjct 421 H 421
Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 6/133 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIP 301
Q + + G++ A TG GKT L +HL P + K+ + A
Sbjct 36 QAKALPVLLAGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAPEGRKITQPRAIIMAPTRE 95
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q + G + G + I + DI+I T +++ K+G I
Sbjct 96 LAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILIGTTGRIIDFYKQGHID 155
Query 362 SLSIFTLMIFDEC 374
+ ++ DE
Sbjct 156 FK-MIQAVVLDEA 167
>sp|Q6FQZ0|DBP8_CANGA ATP-dependent RNA helicase DBP8 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP8 PE=3 SV=1
Length=437
Score = 88.7 bits (218), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 75/205 (37%), Gaps = 19/205 (9%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L E + N I+FV + L+ ++ ++ L
Sbjct 243 EHVKEAYLYQLLTCESYANST--AIIFVNRTTAAEVLRRTLKALD----VRVASL----- 291
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++ M + + F+A+ +LIAT VA G+DI LVI Y+ + I
Sbjct 292 ---HSQMPQQERTNSMHRFRAN-AARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIH 347
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND--SILRLQTWDEAVFREKILH 782
GR RA R + V E I M + + +A+ +
Sbjct 348 RSGRTARAGRKGDAISFITQRDVSRIEAIEARINMKMTECDKVHDTAVIRKALTKVSKAK 407
Query 783 IQTHEKFIRDSQEKPKPVPDKENKK 807
+ +++ + + + ++ +K
Sbjct 408 REALMAMEKENFGERRKLQKRKTQK 432
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 52/164 (32%), Gaps = 5/164 (3%)
Query 214 QEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV 273
+E QN + V + P Q +KG++ I A TG GKT
Sbjct 3 EEVSRKQNFRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIA 62
Query 274 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ P G G + + Q F+ RV + G +
Sbjct 63 FAGPMLTQWSEDPTGMFG--IVLTPTRELAMQIAEQFTALGSYMNIRVALVVGGESIVDQ 120
Query 334 VEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
Q+ II TP L +++ T+ L ++ DE
Sbjct 121 ALQLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEA 164
>sp|A1CKJ0|DBP8_ASPCL ATP-dependent RNA helicase dbp8 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp8 PE=3 SV=1
Length=523
Score = 89.5 bits (220), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 54/154 (35%), Gaps = 16/154 (10%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L + + I+F D L+ + T+ ++
Sbjct 334 EAFLHVLLSTEGNSTKP-AIIFCNHTKTADLLERMLRRLS------------HRVTSLHS 380
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI +LV+ Y+ N + GR
Sbjct 381 LLPQSERNANLARFRAS-AARILVATDVASRGLDIPSVSLVVNYDVPRNPDDYVHRVGRT 439
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
RA R + L V I + M +
Sbjct 440 ARAGRSGESVTLVGQRDVQLVLAIEARVGRQMEE 473
Score = 62.9 bits (151), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/192 (18%), Positives = 64/192 (33%), Gaps = 11/192 (6%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQED----PECQNLSENSCPPSEVSDTNLYSPFKPRN 245
KG +D + + + + + I + E + S + P V + KP
Sbjct 61 KGAEDAKP--VASAGQENPVLIRDALEIGLREEASSFSALNVAPWLVGSLTTLAVRKPTA 118
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q + GK+ I + TG GKT + + P G G + + Q
Sbjct 119 IQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQKWAEDPLGIFGLI--LTPTRELALQ 176
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPS 362
+ I+G T + +++ TP L +++K T+
Sbjct 177 IFEQIKAISAPQSMKPVLITGGTDMRSQALALAGRPHVVVATPGRLADHIKSSGEDTVCG 236
Query 363 LSIFTLMIFDEC 374
L +++ DE
Sbjct 237 LKRVRMVVLDEA 248
>sp|Q4JG17|VASAL_PENVA Probable ATP-dependent RNA helicase vasa-like
OS=Penaeus vannamei OX=6689 GN=vasa PE=2 SV=2
Length=703
Score = 90.2 bits (222), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query 609 PKLED---LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
PK E L + +E + ++FV+ + + D + ++ + + G
Sbjct 495 PKFEKKAKLVEMCEEILISADDEKILVFVEQKRVADFVGTYL----CEKKFRATTMHG-- 548
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
++ L F+ +G HNIL+AT+V G+DI +V+ Y+ ++ + +
Sbjct 549 ------DRYQAQREQALSEFR-TGVHNILVATAVTARGLDIKGIGVVVNYDLPKDIDEYV 601
Query 726 QTRGRGRARGSK 737
GR G++
Sbjct 602 HRIGRTGRLGNR 613
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/127 (23%), Positives = 49/127 (39%), Gaps = 8/127 (6%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL-------KKFPQGQKGKVVFFANQIPVYEQQK 307
M G++ + CA TG GKT LL H++ F + + + + Q
Sbjct 296 MNGRDIMACAQTGSGKTAAFLLPMLHYILDNNCPSNAFEEPAQPTGLVICPTRELAIQIM 355
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ + G A ++ I I++ TP L++ L+KG I S
Sbjct 356 REARKFSHSSVAKCCVAYGGAAGFHQLKTIHSGCHILVATPGRLLDFLEKGKIV-FSSLK 414
Query 368 LMIFDEC 374
++ DE
Sbjct 415 YLVLDEA 421
>sp|P20449|DBP5_YEAST ATP-dependent RNA helicase DBP5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP5
PE=1 SV=2
Length=482
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 62/179 (35%), Gaps = 26/179 (15%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
Q E + ++ + D NE K +L E Y L +I+FV T+ + L
Sbjct 294 LQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMTIGSSIIFVATKKTANVLYGK 349
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + + + ++D F+ G +LI T+V GIDI
Sbjct 350 LKSE------------GHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDI 396
Query 707 AQCNLVILYEYVG---------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
++V+ Y+ I I GR +G + I Y
Sbjct 397 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 455
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/121 (16%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + P+ + + A + Q V +
Sbjct 132 RNMIAQSQSGTGKTAAFSLTMLTRVN--PEDASPQAICLAPSRELARQTLEVVQE----- 184
Query 318 GYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ + T++ + + +N +I+ TP +++ +++ + L + + DE
Sbjct 185 ---MGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDE 240
Query 374 C 374
Sbjct 241 A 241
>sp|A6ZNQ1|DBP5_YEAS7 ATP-dependent RNA helicase DBP5 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP5 PE=3 SV=1
Length=482
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/179 (20%), Positives = 62/179 (35%), Gaps = 26/179 (15%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
Q E + ++ + D NE K +L E Y L +I+FV T+ + L
Sbjct 294 LQTNEVNVDAIKQLYMDCKNEADKF----DVLTELYGLMTIGSSIIFVATKKTANVLYGK 349
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + + + ++D F+ G +LI T+V GIDI
Sbjct 350 LKSE------------GHEVSILHGDLQTQERDRLIDDFR-EGRSKVLITTNVLARGIDI 396
Query 707 AQCNLVILYEYVG---------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
++V+ Y+ I I GR +G + I Y
Sbjct 397 PTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKY 455
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/121 (16%), Positives = 46/121 (38%), Gaps = 15/121 (12%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + P+ + + A + Q V +
Sbjct 132 RNMIAQSQSGTGKTAAFSLTMLTRVN--PEDASPQAICLAPSRELARQTLEVVQE----- 184
Query 318 GYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ + T++ + + +N +I+ TP +++ +++ + L + + DE
Sbjct 185 ---MGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDE 240
Query 374 C 374
Sbjct 241 A 241
>sp|A2QUY7|DBP5_ASPNC ATP-dependent RNA helicase dbp5 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp5 PE=3 SV=1
Length=482
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 46/225 (20%), Positives = 85/225 (38%), Gaps = 35/225 (16%)
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
+ + + Q E ++ ++ + D SN+ K + L + Y L
Sbjct 265 HVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKYQTLVNL----YGLLTVGS 320
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+I+FVKTRA ++ + + G + G+ + ++D F+A G
Sbjct 321 SIIFVKTRASAQEIEKRM------------VAEGHTVASLTGGIEGSQRDAVIDQFRA-G 367
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARG 735
+LI T+V GID++ ++VI Y+ + I GR G
Sbjct 368 HAKVLITTNVLARGIDVSTVSMVINYDIPEIHQPGARQRQADFQTYLHRIGRTGRFGRVG 427
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
+++ E E +N + + N +I R+ T D E I
Sbjct 428 VSISFVSNRE---EWEMLNQIQ-RYFNTNIQRIDTKDWDEVEEII 468
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/119 (16%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KN + + +G GKT +L L + + + + A + Q V +
Sbjct 114 KNLVGQSQSGTGKTAAFVLNILSRLDLSSEQLQKTPQALILAPTRELARQIVGVI-QVMG 172
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + A+ +E + +++ TP +++ +K+ I + +++ DE
Sbjct 173 QFLDGLVIGTAVPADTGARPAKMECS-VVVGTPGTVMDMIKR-RIMIANKLRVLVLDEA 229
>sp|A7TS37|RRP3_VANPO ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=RRP3 PE=3 SV=1
Length=506
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/207 (21%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +++ E I+F +T+A + + L T
Sbjct 313 KNTYLIYLMNEFIGKT----IIVFTRTKANAERITTLAN------------LLEFSATAL 356
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI ++VI Y+ + I G
Sbjct 357 HGDLNQNQRTGSLDLFKA-GRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVG 415
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R RA R K L S + E ++ + +L + E V ++ IL ++
Sbjct 416 RTARAGRSGKSISLVSQYDL----------ELILRIEDVLGKKLPKENVNKDAILTLRDS 465
Query 787 ------EKFIRDSQEKPKPVPDKENKK 807
E + ++ + + + ++
Sbjct 466 VDKANGEVVMELNRRNKEKIARGKGRR 492
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/133 (26%), Positives = 50/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q PA++G + I A TG GKT + + L + Q A
Sbjct 108 KPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRL--WHDQQPYYACILAPTRE 165
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q K F G R I G ++ III TP L+++L+
Sbjct 166 LAQQIKETFDSLGSLMGVRSACIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTRGF 225
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 226 SLRKLKFLVMDEA 238
>sp|Q9NUU7|DD19A_HUMAN ATP-dependent RNA helicase DDX19A OS=Homo
sapiens OX=9606 GN=DDX19A PE=1 SV=1
Length=478
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/223 (19%), Positives = 76/223 (34%), Gaps = 30/223 (13%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+M +D + +R EE L ++ S+ + K + LC +
Sbjct 268 QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL- 326
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
Y ++F TR L + G + M + +
Sbjct 327 ---YGAITIAQAMIFCHTRKTASWLAAELSKE------------GHQVALLSGEMMVEQR 371
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---------GNVIKMIQTRG 729
+++ F+ G +L+ T+V GID+ Q ++VI ++ + I G
Sbjct 372 AAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 430
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R RG ++ S + +N +E N I RL T D
Sbjct 431 RFGKRGLAVNMVDSKHSM---NILNRIQEH-FNKKIERLDTDD 469
Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L ++ P + + + + + Q V + +
Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVE--PSDRYPQCLCLSPTYELALQTGKVIEQ-MGKF 187
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + Q + I+I TP +++ K + + DE
Sbjct 188 YPELKLAYAVRGNKLERGQKISE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 243
>sp|Q0I1X0|RHLB_HISS1 ATP-dependent RNA helicase RhlB OS=Histophilus
somni (strain 129Pt) OX=205914 GN=rhlB PE=3 SV=1
Length=419
Score = 88.3 bits (217), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 89/242 (37%), Gaps = 24/242 (10%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + ++ + + ++ +
Sbjct 171 LGFIRDIRYLLRKCPVPQQRLTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIR 230
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSN++ K+ L +L+EE+ I+F T+ + + ++ + +
Sbjct 231 EELFYPSNQD-KMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH----RV 281
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + +L F G +IL+AT VA G+ I V Y+
Sbjct 282 GLLTG--------DVMQKKRLSLLKQF-TDGTLDILVATDVAARGLHIPDVTHVFNYDLP 332
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVF 776
+ + GR GRA S + + E+ IN+ E+ + SI Q +A+
Sbjct 333 DDCEDYVHRIGRTGRAGESGISISFA----CEEYAINLPAIEEYIGHSIPVSQYDAKALI 388
Query 777 RE 778
+
Sbjct 389 ED 390
Score = 65.6 bits (158), Expect = 9e-10, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFS 311
+KG++ A TG GKT L HHL + + + A + Q + +
Sbjct 44 LKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDAN 103
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G + G + ++ I + DI+I T +++ +K+G I L +++
Sbjct 104 FLVQATGLKTGLAYGGEGYDKQLKVIDQGIDILIGTTGRVIDYVKQGII-RLDYIQVVVL 162
Query 372 DEC 374
DE
Sbjct 163 DEA 165
>sp|A1D6X9|DBP8_NEOFI ATP-dependent RNA helicase dbp8 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp8
PE=3 SV=1
Length=526
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 53/154 (34%), Gaps = 16/154 (10%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L N I+F D L+ + T+ ++
Sbjct 337 EAFLHVLLST-EDNASRPAIIFCNHTKTADLLERMLRR------------LTHRVTSLHS 383
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI +LVI Y+ N + GR
Sbjct 384 LLPQSERNANLARFRAS-AARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRT 442
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
RA R + L V I + M +
Sbjct 443 ARAGRSGEAITLVGQRDVQLVLAIEERVGRQMEE 476
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 32/171 (19%), Positives = 59/171 (35%), Gaps = 7/171 (4%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPT 266
++I +E+ + + + P V + KP Q +KG++ I + T
Sbjct 85 DALEIGLREEA--SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRT 142
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + + P G G V + Q + I+G
Sbjct 143 GSGKTIAFSVPMLQKWAEDPFGIFG--VVLTPTRELALQIFEQIKAISAPQSMKPVLITG 200
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
T + ++I TP L +++K T+ L +++ DE
Sbjct 201 GTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEA 251
>sp|P0CR00|RRP3_CRYNJ ATP-dependent rRNA helicase RRP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=RRP3 PE=3 SV=1
Length=484
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 15/138 (11%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ ++F +T A L + G + MT + L+ F
Sbjct 276 SSSSMMIFTRTVADSQRLSIILRR------------LGFPAIPLHGQMTQSLRLASLNKF 323
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
K+ G IL+AT VA G+DI +LVI Y+ N + GR RA R K L +
Sbjct 324 KSGGRS-ILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT 382
Query 744 NAGVIEKEQINMYKEKMM 761
V ++I + K M
Sbjct 383 QYDVEILQRIESHIGKKM 400
Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/160 (22%), Positives = 56/160 (35%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
E + ++ P KP + Q E A++GK+ I A TG GKT
Sbjct 33 EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAF 92
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
L L + PQ + A + Q + G R + G
Sbjct 93 SLPILQTLWENPQ--PFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQS 150
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + II+ TP L+++L+ SL ++ DE
Sbjct 151 IALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEA 190
>sp|P0CR01|RRP3_CRYNB ATP-dependent rRNA helicase RRP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=RRP3 PE=3 SV=1
Length=484
Score = 89.1 bits (219), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 15/138 (11%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ ++F +T A L + G + MT + L+ F
Sbjct 276 SSSSMMIFTRTVADSQRLSIILRR------------LGFPAIPLHGQMTQSLRLASLNKF 323
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
K+ G IL+AT VA G+DI +LVI Y+ N + GR RA R K L +
Sbjct 324 KSGGRS-ILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVT 382
Query 744 NAGVIEKEQINMYKEKMM 761
V ++I + K M
Sbjct 383 QYDVEILQRIESHIGKKM 400
Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/160 (22%), Positives = 56/160 (35%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
E + ++ P KP + Q E A++GK+ I A TG GKT
Sbjct 33 EASHNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAF 92
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
L L + PQ + A + Q + G R + G
Sbjct 93 SLPILQTLWENPQ--PFFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQS 150
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + II+ TP L+++L+ SL ++ DE
Sbjct 151 IALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEA 190
>sp|P87206|IF4A_CANAL ATP-dependent RNA helicase eIF4A OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIF1
PE=3 SV=1
Length=397
Score = 87.9 bits (216), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 70/181 (39%), Gaps = 17/181 (9%)
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ YN ++ E ++ + V + + L ++ E L+ ++ +
Sbjct 185 QIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE 244
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K + LC + Y T ++F TR+ V+ L N +
Sbjct 245 LEDYKFDCLC----DLYDSISVTQAVIFCNTRSKVEFLTNKLREQ--------HFTV--- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + + + I+ F+ SG ILI+T + GID+ Q +LVI Y+ N I
Sbjct 290 -SAIHADLPQAERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347
Query 726 Q 726
Sbjct 348 H 348
Score = 61.7 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 71/211 (34%), Gaps = 16/211 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q LP +G++ + A +G GKT + + + + + A
Sbjct 45 TPSAIQQRAILPITEGRDVLAQAQSGTGKT--ATFTISALQRINENEKATQALILAPTRE 102
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K+V + V G T+ + +E I++ TP +++ +++
Sbjct 103 LALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGVQIVVGTPGRVLDMIERRYF- 161
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
+ I DE L + +++ T + + A
Sbjct 162 KTDKVKMFILDEA-------------DEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQ 208
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQV 452
+ L+ K + ++ + LE ++Q
Sbjct 209 DVLEVTTKFMNNPVRILVKKDELTLEGIKQF 239
>sp|B0UUZ9|RHLB_HISS2 ATP-dependent RNA helicase RhlB OS=Histophilus
somni (strain 2336) OX=228400 GN=rhlB PE=3 SV=1
Length=419
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/242 (18%), Positives = 89/242 (37%), Gaps = 24/242 (10%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + ++ + + ++ +
Sbjct 171 LGFIRDIRYLLRKCPVPQQRLTMLFSATLSYKVRELAFEHMNDPQYVEIEPLQKTGHRIR 230
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSN++ K+ L +L+EE+ I+F T+ + + ++ + +
Sbjct 231 EELFYPSNQD-KMALLMTLLEEEWPE----RCIIFSNTKHRCEEIWGYLSADGH----RV 281
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + +L F G ++L+AT VA G+ I V Y+
Sbjct 282 GLLTG--------DVMQKKRLSLLKQF-TDGTLDVLVATDVAARGLHIPDVTHVFNYDLP 332
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVF 776
+ + GR GRA S + + E+ IN+ E+ + SI Q +A+
Sbjct 333 DDCEDYVHRIGRTGRAGESGISISFA----CEEYAINLPAIEEYIGHSIPVSQYDAKALI 388
Query 777 RE 778
+
Sbjct 389 ED 390
Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 50/123 (41%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFS 311
+KG++ A TG GKT L HHL + + + A + Q + +
Sbjct 44 LKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDAN 103
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G + G + ++ I DI+I T +++ +K+G I L +++
Sbjct 104 FLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQGII-RLDYIQVVVL 162
Query 372 DEC 374
DE
Sbjct 163 DEA 165
>sp|A6VKC3|RHLB_ACTSZ ATP-dependent RNA helicase RhlB OS=Actinobacillus
succinogenes (strain ATCC 55618 / DSM 22257 / CCUG
43843 / 130Z) OX=339671 GN=rhlB PE=3 SV=1
Length=413
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 111/308 (36%), Gaps = 39/308 (13%)
Query 453 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK-------------RICKDLENLSQI 499
++P + + I + + Q+ D ESLA+ K L+ +
Sbjct 73 THQPDFITNQPRALILAPTRELAVQIAHDAESLAQTTKLRIALAYGGDGYDKQLKTIENG 132
Query 500 QNREFGTQKYEQWIVTVQKACMVF---QMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
+ GT + I V++ + F Q+ DE R+ + +R +
Sbjct 133 VDILIGTT--GRVIDYVKQGIIRFNDIQVVVLDEADRMF--DLGFIKDIRYLLRKCPAPK 188
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
L + ++ E + ++ ++ PSN + K+ L
Sbjct 189 SRLTMLFSATLSYKVRELAFEDMNDPEYIEIEPLQKTGHRIKEELFYPSNRD-KMALLMT 247
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L+EE+ I+F T+ + + ++ + + + G+LTG +
Sbjct 248 LLEEEWPE----RCIIFANTKHRCEEIWGYLAADGQ----RVGLLTG--------DVAQK 291
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
+ +L F G+ +IL+AT VA G+ I V Y+ + + GR GRA
Sbjct 292 KRLALLKQF-TDGELDILVATDVAARGLHIPDVTHVFNYDLPDDREDYVHRIGRTGRAGE 350
Query 736 SKCFLLTS 743
S + +
Sbjct 351 SGMSISFA 358
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (40%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
++GK+ A TG GKT L HHL + + + + A + Q
Sbjct 44 LQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAE 103
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ R+ G + ++ I DI+I T +++ +K+G I + +++
Sbjct 104 SLAQTTKLRIALAYGGDGYDKQLKTIENGVDILIGTTGRVIDYVKQGII-RFNDIQVVVL 162
Query 372 DEC 374
DE
Sbjct 163 DEA 165
>sp|A1RFB3|RHLB_SHESW ATP-dependent RNA helicase RhlB OS=Shewanella
sp. (strain W3-18-1) OX=351745 GN=rhlB PE=3 SV=1
Length=439
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 90/249 (36%), Gaps = 22/249 (9%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQD-LTQRFEEKLQELESVSRDPSNE--NPKLEDLC 615
RM DA L FS + E+ D + + + E S++ E P ED
Sbjct 185 RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGR 732
+ IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I GR
Sbjct 293 KKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 733 ARGSKCFLLTSNAGV---IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+G + + IN DS L+ V + T
Sbjct 352 NKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKIPRKHPAGTRNLR 411
Query 790 IRDSQEKPK 798
R +P+
Sbjct 412 ERAGAGRPQ 420
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + ++ + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SL+ +
Sbjct 104 AILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGII-SLTAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A4YB09|RHLB_SHEPC ATP-dependent RNA helicase RhlB OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224 GN=rhlB
PE=3 SV=1
Length=439
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 90/249 (36%), Gaps = 22/249 (9%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQD-LTQRFEEKLQELESVSRDPSNE--NPKLEDLC 615
RM DA L FS + E+ D + + + E S++ E P ED
Sbjct 185 RMPDANQRLNMLFSATLSMKVQELAYDHMNDPVKVDIAPDEKTSKNIKEEVFYPSQEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGR 732
+ IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I GR
Sbjct 293 KKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 733 ARGSKCFLLTSNAGV---IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
+G + + IN DS L+ V + T
Sbjct 352 NKGVSISFACEEYALNLPAIESYINHSIPVSNYDSSALLEDIPAPVKIPRKHPAGTRNLR 411
Query 790 IRDSQEKPK 798
R +P+
Sbjct 412 ERAGAGRPQ 420
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 54/125 (43%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + ++ + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SL+ +
Sbjct 104 AILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGII-SLTAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A9L5D5|RHLB_SHEB9 ATP-dependent RNA helicase RhlB OS=Shewanella
baltica (strain OS195) OX=399599 GN=rhlB PE=3 SV=1
Length=438
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/258 (20%), Positives = 92/258 (36%), Gaps = 29/258 (11%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ L+ L +++ + + E +E S + P
Sbjct 181 FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + L +W+EG+ + G+LTG
Sbjct 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR +G E+ +N+ E +N SI EA+ + + H
Sbjct 348 GRAGNKGMSISF------ACEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHR 401
Query 788 KF------IRDSQEKPKP 799
K +RD +P
Sbjct 402 KHPSGTRNLRDRSGASRP 419
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SI +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQA-V 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A6WTD3|RHLB_SHEB8 ATP-dependent RNA helicase RhlB OS=Shewanella
baltica (strain OS185) OX=402882 GN=rhlB PE=3 SV=1
Length=438
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 51/258 (20%), Positives = 92/258 (36%), Gaps = 29/258 (11%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ L+ L +++ + + E +E S + P
Sbjct 181 FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + L +W+EG+ + G+LTG
Sbjct 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR +G E+ +N+ E +N SI EA+ + + H
Sbjct 348 GRAGNKGMSISF------ACEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHR 401
Query 788 KF------IRDSQEKPKP 799
K +RD +P
Sbjct 402 KHPSGTRNLRDRSGASRP 419
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SI +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQA-V 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|P0A4D8|CSHA_STRR6 DEAD-box ATP-dependent RNA helicase CshA
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101
GN=cshA PE=3 SV=1
Length=524
Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/346 (17%), Positives = 117/346 (34%), Gaps = 47/346 (14%)
Query 423 ALDYICKLCASLDASVIATVKH----NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
L+ I A++ A VIA + + EEL + R V S I +
Sbjct 59 TLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSS------IEKQ 112
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
++ +S A + L + R+ + + + DE +
Sbjct 113 IKALKSGAHIVVGTPGRLLDLIKRK----------ALKLQDIETLILDEADEMLNMGFLE 162
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ R + + A M DA+ + F + + + +E EL
Sbjct 163 DIEAIISRVPENRQTLLFSATMPDAIKRI--------GVQFMKAPEHVKIAAKELTTELV 214
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
E K + + ++ + + I+F +T+ VD L ++
Sbjct 215 DQYYIRVKEQEKFDTMTRLMD----VAQPELAIVFGRTKRRVDELTRGLKIR-------- 262
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + + +L FK +G+ ++L+AT VA G+DI+ V Y+
Sbjct 263 ----GFRAEGIHGDLDQNKRLRVLRDFK-NGNLDVLVATDVAARGLDISGVTHVYNYDIP 317
Query 719 GNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+ + GR GRA + + + + + I +K M
Sbjct 318 QDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMK 363
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/121 (21%), Positives = 52/121 (43%), Gaps = 3/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++GK+ I A TG GKT L ++ + + + A + Q + ++
Sbjct 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRT--EEATIQALVIAPTRELAVQSQEELFRF 92
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G +V + G ++ ++ + I++ TP L++ +K+ + L +I DE
Sbjct 93 GRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKAL-KLQDIETLILDE 151
Query 374 C 374
Sbjct 152 A 152
>sp|P0A4D7|CSHA_STRPN DEAD-box ATP-dependent RNA helicase CshA
OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334
/ TIGR4) OX=170187 GN=cshA PE=3 SV=1
Length=524
Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/346 (17%), Positives = 117/346 (34%), Gaps = 47/346 (14%)
Query 423 ALDYICKLCASLDASVIATVKH----NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
L+ I A++ A VIA + + EEL + R V S I +
Sbjct 59 TLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSS------IEKQ 112
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
++ +S A + L + R+ + + + DE +
Sbjct 113 IKALKSGAHIVVGTPGRLLDLIKRK----------ALKLQDIETLILDEADEMLNMGFLE 162
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ R + + A M DA+ + F + + + +E EL
Sbjct 163 DIEAIISRVPENRQTLLFSATMPDAIKRI--------GVQFMKAPEHVKIAAKELTTELV 214
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
E K + + ++ + + I+F +T+ VD L ++
Sbjct 215 DQYYIRVKEQEKFDTMTRLMD----VAQPELAIVFGRTKRRVDELTRGLKIR-------- 262
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + + +L FK +G+ ++L+AT VA G+DI+ V Y+
Sbjct 263 ----GFRAEGIHGDLDQNKRLRVLRDFK-NGNLDVLVATDVAARGLDISGVTHVYNYDIP 317
Query 719 GNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+ + GR GRA + + + + + I +K M
Sbjct 318 QDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMK 363
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/121 (21%), Positives = 52/121 (43%), Gaps = 3/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++GK+ I A TG GKT L ++ + + + A + Q + ++
Sbjct 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRT--EEATIQALVIAPTRELAVQSQEELFRF 92
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G +V + G ++ ++ + I++ TP L++ +K+ + L +I DE
Sbjct 93 GRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKAL-KLQDIETLILDE 151
Query 374 C 374
Sbjct 152 A 152
>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592
GN=PRP5 PE=3 SV=2
Length=913
Score = 89.8 bits (221), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 68/171 (40%), Gaps = 20/171 (12%)
Query 603 DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL--KNWIEGNPKLSFLKPGI 660
D S E K L L + + E ++FV+ + D L K E P L+
Sbjct 550 DKSLEEAKFSKLLSTLNDYGDKDAECKILIFVEKQIAADELLVKLLTEKYPCLAI----- 604
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVG 719
+ G +K + F +S NILIATS+A G+D+ NLVI YE
Sbjct 605 ---------HGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAAS 655
Query 720 ---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
+ + + GR +G+ ++S G + + + +++ +
Sbjct 656 HMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKAMRLSKVSEDEIN 706
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 53/133 (40%), Gaps = 5/133 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVY 303
Q + M G++ I A TG GKT +L H++ P +G + +
Sbjct 344 QAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELA 403
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIP 361
Q + + ++ G ++ + ++ + II+ TP +++ L G +
Sbjct 404 LQIHKELNHFTKKLNISSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVT 463
Query 362 SLSIFTLMIFDEC 374
+L T ++ DE
Sbjct 464 NLQRVTYLVLDEA 476
>sp|C6DHF5|RHLB_PECCP ATP-dependent RNA helicase RhlB OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) OX=561230
GN=rhlB PE=3 SV=1
Length=430
Score = 88.3 bits (217), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/178 (22%), Positives = 69/178 (39%), Gaps = 19/178 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +L+EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLLEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + IL+ F
Sbjct 258 --RCIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
G+ +IL+AT VA G+ I V Y+ + + GR GRA S + +
Sbjct 303 TQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA 360
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/126 (21%), Positives = 49/126 (39%), Gaps = 6/126 (5%)
Query 254 AMKGKNTIICAPTGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
A+ G++ A TG GKT F++ + H Q + + + A + Q S
Sbjct 43 ALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHS 102
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
G ++ G + ++ + DI+I T L++ K+ I L +
Sbjct 103 DAEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHIN-LGAIQV 161
Query 369 MIFDEC 374
++ DE
Sbjct 162 VVLDEA 167
>sp|Q6CJU1|DBP5_KLULA ATP-dependent RNA helicase DBP5 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP5 PE=3 SV=1
Length=469
Score = 88.7 bits (218), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/201 (20%), Positives = 69/201 (34%), Gaps = 29/201 (14%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
Q+ E + ++ + D NE K IL E Y L +I+FVKT+ + L
Sbjct 281 LQKNEVNVSAIKQLFMDCDNEEHKYT----ILSELYGLLTIGSSIIFVKTKQTANLLYAK 336
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + + + ++D F+ G +LI T+V GIDI
Sbjct 337 LKKE------------GHQVSILHGDLQSQDRDRLIDDFR-EGRSKVLITTNVLARGIDI 383
Query 707 AQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
++V+ Y+ + I GR G + I Y
Sbjct 384 PSVSMVVNYDLPTLPNGQADPSTYVHRIGRTGRFGRTGVAISFIHDKKSFEVLSAIQKYF 443
Query 758 EKMMNDSILRLQTWDEAVFRE 778
+ I ++ T D
Sbjct 444 GDI---EITKVPTDDLDEMET 461
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 17/122 (14%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
N I + +G GKT L + P + + + + Q V +
Sbjct 119 HNMIAQSQSGTGKTAAFSLTMLT--RVDPNVNSTQAICLSPARELARQTLEVIQEM---- 172
Query 318 GYRVTGISGATAENVPVEQIVENND-----IIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
G T+ + V E N I++ TP +++ +++ + L + + D
Sbjct 173 -----GKFTKTSSQLVVPDSFERNKPITANIVVGTPGTVLDLIRRKMLN-LGSIKVFVLD 226
Query 373 EC 374
E
Sbjct 227 EA 228
>sp|Q0UCB9|DBP5_PHANO ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP5 PE=3 SV=1
Length=471
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/176 (19%), Positives = 63/176 (36%), Gaps = 27/176 (15%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E ++ ++ + D + K L Y L + +I+FV+TR + L+ +
Sbjct 271 ELTIEGIKQLYIDIDKDQDKYSTLLKF----YGLMTQASSIIFVRTRRTAEELERRM--- 323
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+ G + + + ++D F+ SG+ +LI T+V GID+
Sbjct 324 ---------VAEGHKVAQLSGALEGQDRDRVIDQFR-SGEAKVLITTNVLARGIDVESVT 373
Query 711 LVILYEYVG----------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
+VI Y+ + I GR G + A + I Y
Sbjct 374 MVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDIASY 429
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/116 (14%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N I + +G GKT L + + + + A + Q V + +
Sbjct 105 NMIAQSQSGTGKTAAFSLNILSRIDLSR--NEPQAIALAPSRELARQILGVI-THMGQFM 161
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ +++ + +++ TP + LK+ + +++ DE
Sbjct 162 EGLKTMAAIPDPTKRNQRL--DAHVLVGTPGTVQEQLKR-RLIKSDSIKILVLDEA 214
>sp|Q9SA27|RH36_ARATH DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis
thaliana OX=3702 GN=RH36 PE=2 SV=1
Length=491
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/156 (22%), Positives = 60/156 (38%), Gaps = 15/156 (10%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+++ K L IL + ++FV T L ++ +
Sbjct 281 EDKDAKELYLVHIL-SQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENI--------- 330
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
++ + + L FK SG IL+AT VA G+DI +LVI Y+ +
Sbjct 331 ---AMHSLNSQSMRLSALSKFK-SGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDY 386
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
+ GR AR + L S + + I+ +E++
Sbjct 387 VHRVGR-TARAGRGGLAVSIITETDVKLIHKIEEEV 421
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 63/192 (33%), Gaps = 9/192 (5%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQ-----NLSENSCPPSEVSDTNLYSPFKPR 244
K + +++++ L+ T + F +P N V KP
Sbjct 23 KTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPT 82
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
Q + G++ + A TG GKT L H L + P G VV +
Sbjct 83 PVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVV--TPTRELAF 140
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG-TIPSL 363
Q F R + I G +V I+I TP + L+ +P +
Sbjct 141 QLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPV 200
Query 364 -SIFTLMIFDEC 374
S ++ DE
Sbjct 201 FSRTKFLVLDEA 212
>sp|Q5B3H7|DBP8_EMENI ATP-dependent RNA helicase dbp8 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp8 PE=3 SV=1
Length=525
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/154 (23%), Positives = 55/154 (36%), Gaps = 16/154 (10%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L N I+F T D L+ + G T+ ++
Sbjct 336 EAFLHVLLST-ESNITKSAIVFTNTTKSADLLERLLRS------------LGHRVTSLHS 382
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS +L+AT VA G+DI +LV+ +E N + GR
Sbjct 383 LLPQSERNSNLARFRAS-AARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRT 441
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
RA R + L V I + M +
Sbjct 442 ARAGRTGEAVTLVGQRDVQLVLAIEERIGRKMVE 475
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 51/363 (14%), Positives = 115/363 (32%), Gaps = 26/363 (7%)
Query 188 VEKGIKDVETEDLEDKMETSDIQIFYQE------DPECQNLSENSCPPSEVSDTNLYSPF 241
+ + K + + + + + ++ + E + + P V +
Sbjct 57 LSRIKKKSSSTNATSSRKDDENPVLIKDALEIGLNAEENSFKALNVAPWLVGSLTTMAVR 116
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q +KG++ I + TG GKT + + P G V
Sbjct 117 KPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAEDPFGIFA--VILTPTRE 174
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG--- 358
+ Q + I+G T ++ +++ TP L +++
Sbjct 175 LALQIFEQIKAISAPQSMKPVLITGGTDMRSQAIELAGRPHVVVATPGRLADHINTSGTD 234
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMI-----MFNYLD-----QKLGGSSGPLPQVIGL 408
T+ L +++ DE P +M+ ++L Q L ++ P+V L
Sbjct 235 TVAGLKRVRMVVLDEADRLLSPGPGSMLPDVETCLSFLPGPSQRQTLLFTATLTPEVRAL 294
Query 409 TA---SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+ + G T+ + + + +L + + + E V+ + K
Sbjct 295 KSMPQTPGKPPIFVTEISTEAKDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAI 354
Query 466 RISD--KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF 523
++ K ++ +L+R + L + N + +V A
Sbjct 355 VFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGL 414
Query 524 QMP 526
+P
Sbjct 415 DIP 417
>sp|A3D9I5|RHLB_SHEB5 ATP-dependent RNA helicase RhlB OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) OX=325240 GN=rhlB
PE=3 SV=1
Length=438
Score = 87.9 bits (216), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/258 (20%), Positives = 92/258 (36%), Gaps = 29/258 (11%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ L+ L +++ + + E +E S + P
Sbjct 181 FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + L +W+EG+ + G+LTG
Sbjct 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR +G E+ +N+ E +N SI EA+ + + H
Sbjct 348 GRAGNKGMSISF------ACEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHR 401
Query 788 KF------IRDSQEKPKP 799
K +RD +P
Sbjct 402 KHPSGTRNLRDRSGTSRP 419
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SI +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQA-V 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|B8E670|RHLB_SHEB2 ATP-dependent RNA helicase RhlB OS=Shewanella
baltica (strain OS223) OX=407976 GN=rhlB PE=3 SV=1
Length=438
Score = 87.9 bits (216), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/258 (20%), Positives = 92/258 (36%), Gaps = 29/258 (11%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ L+ L +++ + + E +E S + P
Sbjct 181 FLFRRMPEANQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E+ +L + I+F T+ + L +W+EG+ + G+LTG
Sbjct 241 EEKMRLLLTLIEEDWPEKAIVFSNTKHSCETLWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F SG +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRIRILEQF-TSGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR +G E+ +N+ E +N SI EA+ + + H
Sbjct 348 GRAGNKGMSISF------ACEEYALNLPAIESYINHSIPVSNYDSEALLADIPTPAKIHR 401
Query 788 KF------IRDSQEKPKP 799
K +RD +P
Sbjct 402 KHPSGTRNLRDRSGTSRP 419
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SI +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIGLNSIQA-V 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q7A0D2|CSHA_STAAW DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain MW2) OX=196620 GN=cshA PE=3
SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q6G7M9|CSHA_STAAS DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=cshA
PE=3 SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q7A4G0|CSHA_STAAN DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain N315) OX=158879 GN=cshA PE=1
SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q99SH6|CSHA_STAAM DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878
GN=cshA PE=1 SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q5HEB9|CSHA_STAAC DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain COL) OX=93062 GN=cshA PE=3
SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q2FWH5|CSHA_STAA8 DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061
GN=cshA PE=1 SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q2FF45|CSHA_STAA3 DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain USA300) OX=367830 GN=cshA
PE=3 SV=1
Length=506
Score = 88.7 bits (218), Expect = 6e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|A7E436|DBP8_SCLS1 ATP-dependent RNA helicase dbp8 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp8 PE=3 SV=1
Length=540
Score = 88.7 bits (218), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/153 (24%), Positives = 53/153 (35%), Gaps = 17/153 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L L E +L ++F A D L + + L T ++
Sbjct 353 HYLHMFLLTEKNLPKS--IVIFCNRTATADYLTHLLR------------LLEHRVTALHS 398
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI + LVI Y+ + I GR
Sbjct 399 KLPQRQRIDNLGRFRAS-AARILVATDVAARGLDIPEVGLVINYDVPRDPDDYIHRVGRT 457
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
RA R + V I + M
Sbjct 458 ARAGRKGEAVTFVGQRDVQLILAIEKRVGRQME 490
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/299 (15%), Positives = 91/299 (30%), Gaps = 32/299 (11%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I + TG GKT + + P G V + Q F
Sbjct 144 EILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALV--LTPTRELALQIYEQFKA 201
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ I+G + + + ++I TP L ++++ T+ +L ++
Sbjct 202 ISSPQSLKAVLITGGSDMRPQATALAQRPHVVIATPGRLADHIRTSGEDTVCALRRVRMV 261
Query 370 IFDECHN--TSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTASVGVGDAKNT---- 420
+ DE S M +++ L P + + T + V K+
Sbjct 262 VLDEADRLLASGS---VGSMLPDVEECLSLLPPPSERQTLLFTATVTPEVRALKDMPRTL 318
Query 421 -------DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI-----S 468
E + +SL+ + + E ++ + + I
Sbjct 319 GKPPVFVCEVDTQALAIPSSLNQMHLQVPVTHREH---YLHMFLLTEKNLPKSIVIFCNR 375
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD 527
+ L+R E + L +I N + +V A +P+
Sbjct 376 TATADYLTHLLRLLEHRVTALHSKLPQRQRIDNLGRFRASAARILVATDVAARGLDIPE 434
>sp|Q6GEZ3|CSHA_STAAR DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=cshA
PE=3 SV=1
Length=506
Score = 88.7 bits (218), Expect = 7e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|A4RIF1|DBP5_PYRO7 ATP-dependent RNA helicase DBP5 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP5 PE=3 SV=2
Length=477
Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 76/206 (37%), Gaps = 34/206 (17%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
D + + Q ++ E ++ + + D + K E LC + Y L
Sbjct 255 DHVKSYAEKFAPQANQMKLRQQELTVKGISQMYMDCPSLKEKYEVLC----KLYGLMTIG 310
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+++FVKTR D ++ +E + G + + + +LD F+ S
Sbjct 311 SSVIFVKTRESADEIQRRMEAD------------GHKVSALHGAFQGQERDQLLDDFR-S 357
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYV-----------GNVIKMIQTRGRGRARGSK 737
G +LI T+V GID++ ++VI Y+ + I GR G
Sbjct 358 GKSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGDQSPDAETYLHRIGRTGRFGRVGVS 417
Query 738 CFL------LTSNAGVIEKEQINMYK 757
T+ + + E I++ +
Sbjct 418 ISFVHDRKSFTALSSIAEHYGIDLIQ 443
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/118 (17%), Positives = 46/118 (39%), Gaps = 7/118 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT ++ + F Q + + + A + Q +
Sbjct 109 RNMIAQSQSGTGKTGAFVVTILSRV-DFNQPNQPQALALAPSRELARQ----IQSVIQSI 163
Query 318 GYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G TG+ A + ++++ TP +++ +++ +S L++ DE
Sbjct 164 GQFCTGLVVDAAIPGAISRETGVKANVVVGTPGTVMDLIRRRQFD-VSQLKLLVVDEA 220
>sp|Q2YUH3|CSHA_STAAB DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036
GN=cshA PE=3 SV=1
Length=506
Score = 88.7 bits (218), Expect = 7e-17, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 43/353 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I ++K
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR--AAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + +A + Q L
Sbjct 134 LNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++E+ I++E + T + I+F +T+
Sbjct 194 QQFMKSPKIIK--TMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK NIL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QINILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLL--TSNAGVIEKEQI 753
VA G+DI+ + V ++ + I GR G + + + E
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDA 358
Query 754 NMYKEKMM----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
N K + +L+ + D E + ++ + R S E D
Sbjct 359 NGRKMSALRPPHRKEVLQAREDDIKEKVENWMSKESESRLKRISTELLNEYND 411
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/155 (19%), Positives = 59/155 (38%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ G +V + G ++ + +
Sbjct 61 --IEKVVWKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTDGIHTLILDEA 152
>sp|Q5AJD0|DBP5_CANAL ATP-dependent RNA helicase DBP5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP5
PE=3 SV=2
Length=540
Score = 88.7 bits (218), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 64/173 (37%), Gaps = 26/173 (15%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
+ ++ E + ++ + D +E K E LC E Y L +I+FV+ +
Sbjct 346 DANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLC----ELYGLLTIGSSIIFVEKKETA 401
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
D L ++ G + + G+ + ++D F+ G +LI T+V
Sbjct 402 DVLYGKMKKE------------GHTVSVLHGGLDNTDRDRLIDDFR-EGRSKVLITTNVL 448
Query 701 DEGIDIAQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLLTSN 744
GIDIA ++V+ Y+ + I GR G +
Sbjct 449 ARGIDIASVSMVVNYDMPTDKYGKPDPSTYLHRIGRTGRFGRVGVSISFIHDR 501
Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 42/117 (36%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + P + + + + + Q V +
Sbjct 190 RNMIGQSQSGTGKTAAFSLTMLS--RVDPTIKMPQCLCLSPTRELARQTLEVITTM---- 243
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + N N +++ TP I ++ +++ + LS + + DE
Sbjct 244 GKFTNITTQLVVPNAIPRGSSVNAQVLVGTPGIAIDLIRRRQLN-LSKMKVFVLDEA 299
>sp|Q61655|DD19A_MOUSE ATP-dependent RNA helicase DDX19A OS=Mus
musculus OX=10090 GN=Ddx19a PE=1 SV=2
Length=478
Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/223 (19%), Positives = 75/223 (34%), Gaps = 30/223 (13%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+M +D + +R EE L ++ +N K + LC +
Sbjct 268 QMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNL- 326
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
Y ++F TR L + G + M + +
Sbjct 327 ---YGAITIAQAMIFCHTRKTASWLAAELSKE------------GHQVALLSGEMMVEQR 371
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---------GNVIKMIQTRG 729
+++ F+ G +L+ T+V GID+ Q ++VI ++ + I G
Sbjct 372 AAVIERFR-EGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 430
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R RG ++ S + +N +E N I RL T D
Sbjct 431 RFGKRGLAVNMVDSKHSM---NILNRIQEH-FNKKIERLDTDD 469
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L ++ P + + + + + Q V + +
Sbjct 131 QNLIAQSQSGTGKTAAFVLAMLSRVE--PADRYPQCLCLSPTYELALQTGKVIEQ-MGKF 187
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + Q V I+I TP +++ K + + DE
Sbjct 188 HPELKLAYAVRGNKLERGQKVSE-QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 243
>sp|Q6FM43|PRP28_CANGA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP28
PE=3 SV=1
Length=582
Score = 89.1 bits (219), Expect = 7e-17, Method: Composition-based stats.
Identities = 66/371 (18%), Positives = 122/371 (33%), Gaps = 45/371 (12%)
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQV 452
+ L S L ++ L A + AL + + S + E ++
Sbjct 226 KTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEINRLLSAWENKKN 285
Query 453 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQW 512
+ S IS + L+ L + L L++IQ+
Sbjct 286 LNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHLVVLNKIQS----------- 334
Query 513 IVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 572
+ + +A + + +D+ I L R+ + A YLK+
Sbjct 335 -LVLDEADRMIDLGFEDQMKSILSHLMADELAARQTMLFTATLSSSVESIAKGYLKNPLH 393
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ +D + +TQ +++ KL L L + I+
Sbjct 394 VSVGSRWDSDKPLITQVVRHT-----------GDDDKKLSFLKDDLIKNGLP-----AII 437
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F+ + D L + + I+T G +Q+ ++ + K SG N
Sbjct 438 FINYKETADWLTLRLSD-------RFNIVTLHGSKSQS------QRESAIQKLK-SGTAN 483
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LIAT+VA G+DI LV+ ++ + I I GR G LT
Sbjct 484 VLIATNVAARGLDIPDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLTGEEDPQL 543
Query 750 KEQINMYKEKM 760
+Q+ Y + +
Sbjct 544 IKQLAKYVKDV 554
Score = 54.0 bits (128), Expect = 5e-06, Method: Composition-based stats.
Identities = 58/386 (15%), Positives = 115/386 (30%), Gaps = 36/386 (9%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQG-------QKGKVVFFANQIPVYEQQKSVF 310
++ + A TG GKT + L P + + +Q
Sbjct 214 RDILGIASTGSGKTLAFSIPILARLDALPARPVNLKTLDGPLALVLVPTRELAQQISQEI 273
Query 311 SKYF----ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++ + I G + + + DI+I TP L++ L + I
Sbjct 274 NRLLSAWENKKNLNAVSIVGGHSMSDISHTLRNGCDILIATPGRLLDVLDNHLVVLNKIQ 333
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDY 426
+L + DE + M + L + ++ TA+ +++
Sbjct 334 SL-VLDEADRMI-DLGFEDQMKSILSHLMADELAARQTML-FTAT--------LSSSVES 382
Query 427 ICK--LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTES 484
I K L L SV + + + QVV +K+ D K + ++
Sbjct 383 IAKGYLKNPLHVSVGSRWDSDKPLITQVVRHTGDDDKKLSFLKDDLIKNGLPAIIFINYK 442
Query 485 LAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
L+ + F Q+ + ++ I +
Sbjct 443 ETADW------LTLRLSDRFNIVTLHGSKSQSQRESAIQKLKSGTANVLIATNVAARGLD 496
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
+ D ++ K DY+ RA LT EE Q ++ +++
Sbjct 497 I---PDVALVVNFQMSKKFDDYIHRIGRTGRAGKTGIAVTYLT--GEEDPQLIKQLAKYV 551
Query 605 SNENP-KLEDLCFILQEEYHLNPETI 629
+ +P K D + + + ET
Sbjct 552 KDVDPNKENDFPEECAKHFGIVSETR 577
>sp|A7EML8|RRP3_SCLS1 ATP-dependent rRNA helicase rrp3 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=rrp3 PE=3 SV=1
Length=482
Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/191 (19%), Positives = 69/191 (36%), Gaps = 21/191 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + I+F +T + + G G
Sbjct 283 KDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT------------LGFGAIPL 326
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ ++ L+ F+A G IL+AT VA G+DI ++V+ Y+ + I G
Sbjct 327 HGQLSQSSRLGALNKFRA-GSREILVATDVAARGLDIPSVDVVLNYDMPQDSKTYIHRVG 385
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA + + V +I K + + VF+ ++ Q H
Sbjct 386 RTARAGKSGHAISFVTQYDVEIWMRIEAALGK--KQEEYQTVKDEVMVFKPRVEEAQRHA 443
Query 788 KFIRDSQEKPK 798
+ + + +
Sbjct 444 RNEMKNLHEDR 454
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 47/128 (37%), Gaps = 2/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++G++ I A TG GKT L L PQ G V A + Q
Sbjct 83 QRESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKPQPLFGLV--LAPTRELAYQI 140
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F + I G + + II+ TP L+++L+ SL
Sbjct 141 SQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLENTKGFSLRSL 200
Query 367 TLMIFDEC 374
++ DE
Sbjct 201 KYLVMDEA 208
>sp|Q7RZH4|MAK5_NEUCR ATP-dependent RNA helicase mak-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=mak-5 PE=3 SV=1
Length=805
Score = 89.5 bits (220), Expect = 8e-17, Method: Composition-based stats.
Identities = 69/364 (19%), Positives = 121/364 (33%), Gaps = 47/364 (13%)
Query 407 GLTA---SVGVGDAKNTDEALDYICK-------LCASLDASVIATVKHNLEELEQVVYKP 456
G TA S A+ + L +CK +C+ L + K L+ + V+ P
Sbjct 287 GATALILSPTRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQKRQLQVADIVIATP 346
Query 457 QKFFR--KVESRISDKFKYIIAQLMRDTESLAKRIC-KDLENLSQIQNREFGTQKYEQWI 513
+ + ++ + + I ++ + + L K K+ E + + +R + E
Sbjct 347 GRMWEVMSSDNSVLASLRNISFLVLDEADRLLKDGHFKEAEEIFKALDRPPVEENNEDQK 406
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 573
+ + + EE H+ K + + + K F
Sbjct 407 MGGTDEEGQEEEEEDSEE-----EEEEEEEHVNKRQTLIFSATFNKNLQQKLAGKSKFKA 461
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-----HLNPET 628
+ + Q L R K + V + N L + ++ Y L P
Sbjct 462 TSTQDMEYLLQKLNFRETPKFVDANPVHQMAENLKEGLIMCGDMEKDLYLYATLMLQPTR 521
Query 629 ITILFVKTRALVDALKNWIEGN--PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++F + V L +E P ++GM A+ +D FK
Sbjct 522 RALVFTNSVNSVRRLTPLLENLNLPAFPL--------------HSGMIQQARLRSIDRFK 567
Query 687 AS-------GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKC 738
A+ G IL+AT VA G+DI +LVI Y + GR RA S
Sbjct 568 ANEGAKKKNGSAAILVATDVAARGLDIPDVDLVIHYHVPRAAEDYVHRSGRTARASNSGT 627
Query 739 FLLT 742
+L
Sbjct 628 SILL 631
Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/147 (18%), Positives = 51/147 (35%), Gaps = 15/147 (10%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHL-------KKFPQGQKGKVVFFAN 298
Q + M G + I A TG GKT + + E L + + + + +
Sbjct 236 QSKAIPEIMAGHDVIGKASTGSGKTLAFGIPVIESWLSAAETRKQNKEERKGATALILSP 295
Query 299 QIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ +Q K Y + + G + ++ ++ DI+I TP + +
Sbjct 296 TRELAQQIRDHLQALCKGLPTAPYICSVLGGMAVQKQ--KRQLQVADIVIATPGRMWEVM 353
Query 356 K--KGTIPSLSIFTLMIFDECHNTSKQ 380
+ SL + ++ DE K
Sbjct 354 SSDNSVLASLRNISFLVLDEADRLLKD 380
>sp|Q6FNK8|RRP3_CANGA ATP-dependent rRNA helicase RRP3 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RRP3 PE=3 SV=1
Length=493
Score = 88.3 bits (217), Expect = 8e-17, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 70/180 (39%), Gaps = 30/180 (17%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E I+F +T+A + L L T
Sbjct 300 KNTFLIYLLNEFIGKT----VIIFTRTKANAERLSGLCN------------LLEFSATAL 343
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI ++VI Y+ + I G
Sbjct 344 HGDLNQNQRTGALDLFKA-GKRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVG 402
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R RA R K L S + E ++ + +L + E+V + IL ++
Sbjct 403 RTARAGRSGKSISLVSQYDL----------ELILRIEEVLGKKLPKESVDKNIILTLRDS 452
Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 50/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q PA+ G + I A TG GKT + + L + Q A
Sbjct 95 KPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKL--WEDQQPYYACVLAPTRE 152
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ +Q K F G R T I G ++ III TP L+++L+
Sbjct 153 LAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGF 212
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 213 SLKNLKFLVMDEA 225
>sp|P33906|DEAD_KLEPN ATP-dependent RNA helicase DeaD OS=Klebsiella
pneumoniae OX=573 GN=deaD PE=3 SV=3
Length=643
Score = 89.1 bits (219), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/190 (25%), Positives = 77/190 (41%), Gaps = 30/190 (16%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELE---SVSRDPSNENP--------KLEDLCF 616
+ + + +A E + +T+RF ++ QE+ SV+ P K E L
Sbjct 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVR 238
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L+ E I+FV+T+ + +E N G N M
Sbjct 239 FLEAEDFDA----AIIFVRTKNATLEVAEALERN------------GYNSAALNGDMNQA 282
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
++ L+ K G +ILIAT VA G+D+ + +LV+ Y+ + + GR GRA R
Sbjct 283 LREQALERLK-DGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341
Query 735 GSKCFLLTSN 744
+ L N
Sbjct 342 AGRALLFVEN 351
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E + G++ + A TG GKT L +++ P+ + +++ A
Sbjct 28 KPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNNID--PELRAPQILVLAPTRE 85
Query 302 VYEQQKSV---FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q FSK+ G V + G +V + + + I++ TP L+++LK+G
Sbjct 86 LAVQVAEAMTEFSKHM--RGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143
Query 359 TIPSLSIFTLMIFDEC 374
T+ LS + ++ DE
Sbjct 144 TLD-LSKLSGLVLDEA 158
>sp|Q2UKX3|DBP8_ASPOR ATP-dependent RNA helicase dbp8 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp8
PE=3 SV=1
Length=443
Score = 87.9 bits (216), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 50/139 (36%), Gaps = 16/139 (12%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L + + I+F D L+ + T+ ++
Sbjct 254 EAFLHVLLSTERNSTKP-AIIFCNHTKTADLLERMLRRLS------------HRVTSLHS 300
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI +LVI ++ N + GR
Sbjct 301 LLPQSERNSNLARFRAS-AARILVATDVASRGLDIPSVSLVINFDVPRNPDDYVHRVGRT 359
Query 731 GRA-RGSKCFLLTSNAGVI 748
RA R + L V
Sbjct 360 ARAGRHGEAVTLVGQRDVQ 378
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I + TG GKT + + P G V + Q
Sbjct 46 EILKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFA--VVLTPTRELALQIYEQIKA 103
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ I+G T + + ++I TP L +++ T+ L ++
Sbjct 104 ISAPQSMKPLLITGGTDMRSQALALSQRPHVVIATPGRLADHINTSGEDTVCGLKRVRMV 163
Query 370 IFDEC 374
+ DE
Sbjct 164 VLDEA 168
>sp|Q75C39|DBP5_EREGS ATP-dependent RNA helicase DBP5 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP5 PE=3 SV=2
Length=466
Score = 87.9 bits (216), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/164 (20%), Positives = 61/164 (37%), Gaps = 26/164 (16%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
QR E + ++ + D ++E K LC + Y L +I+FV+T+ + L
Sbjct 279 LQRNEVNVSAIKQLFMDCNDERHKFTVLC----DLYGLLTIGSSIIFVQTKQTANMLYTE 334
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + + + ++ F+ G +LI T+V GIDI
Sbjct 335 LKRE------------GHQVSILHGDLQSADRDRLIGDFR-EGRSKVLITTNVLARGIDI 381
Query 707 AQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLL 741
++V+ Y+ + I GR G +
Sbjct 382 PTVSMVVNYDLPMTANGQPDPSTYVHRIGRTGRFGRTGVAISFI 425
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/117 (18%), Positives = 39/117 (33%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + + + A + Q V +
Sbjct 117 RNMIAQSQSGTGKTAAFSLTMLS--RVDVAVPATQAICLAPSRELARQTLEVIQEM---- 170
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G S + + N II+ TP +++ +++ I L + DE
Sbjct 171 GKFTKIASQLIVPDSYEKNKAINAHIIVGTPGTVLDLMRRKMIQ-LGKVKTFVLDEA 226
>sp|Q9Y7C4|ROK1_CANAL ATP-dependent RNA helicase CHR1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=CHR1
PE=3 SV=2
Length=578
Score = 88.7 bits (218), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 87/251 (35%), Gaps = 21/251 (8%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
R + + + + + + E ++ NE KL +
Sbjct 311 KIRKSIFSATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFTGNEQGKLLAIRQ 370
Query 617 ILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
++Q+ P I+F+++ AL + + + + T
Sbjct 371 MIQQGEFKPP---IIIFLQSITRAKALFHELLYDRLNVDVI-------------HAERTP 414
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGR 732
++ ++ FK +GD +LI T V G+D NLVI Y+ + + I GRG
Sbjct 415 KQREEVIKRFK-NGDIWVLITTDVLARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGG 473
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD 792
G T K +N+ K+ ND + + +++ I+THE +
Sbjct 474 KAGKAVTFFTKEDDKAIKPILNVMKQSGCNDGYSQWMEDMGKLSKKEKKQIKTHEIQRKK 533
Query 793 SQEKPKPVPDK 803
PK + K
Sbjct 534 ISTVPKVIKQK 544
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 49/256 (19%), Positives = 89/256 (35%), Gaps = 16/256 (6%)
Query 129 ECLINQECEEI-----LQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFS 183
E L+N+ E + S +G + S+KE +T + ++E
Sbjct 39 ESLLNEVERETDFFHTRKHNSNSTTTSGKGDKLTNGANSNKEEQMETNETKAKEEEIPPP 98
Query 184 ELWIVEKGIKDVETEDLEDKMETSDIQIF-YQEDPECQNLSENSCPPSEVSDTNLYSPFK 242
EL E + + I I +Q+ ++++ +S+ +
Sbjct 99 ELTTEEDAQTFRNLHKSKVTGDDIPIPIGSFQDMIGRFHINKK-----VLSNLIDNEFVE 153
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQI 300
P Q E + ++ I CAPTG GKT L+ + + + + +
Sbjct 154 PTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKNVSKNHGIRGLIISPTN 213
Query 301 PVYEQQKSVFSKYF-ERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKG 358
+ Q V +S A + I DII+ TP L++ +K+G
Sbjct 214 ELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYDIIVSTPLRLIDVVKQG 273
Query 359 TIPSLSIFTLMIFDEC 374
+ LS +I DE
Sbjct 274 NMD-LSKIEQLIIDEA 288
>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp3
PE=3 SV=1
Length=493
Score = 87.9 bits (216), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/153 (21%), Positives = 54/153 (35%), Gaps = 18/153 (12%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ K L +L++ + F + ++ +++ G
Sbjct 311 HEKEGRLVQLLKQH--QRGAEKVLAFCLYKKEATRIERFLQSR------------GFKVA 356
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKM 724
+ ++ + LDAFK +G +L+AT VA G+DI LVI + +
Sbjct 357 GIHGDLSQQERFRSLDAFK-TGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHR 415
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
I GR A G L T IN+ K
Sbjct 416 IGRTGRAGAEGHAITLFTETDKAQSGALINVLK 448
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 6/122 (5%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG----KVVFFANQIPVYEQQKSVFSK 312
G++ I A TG GKT L C ++ + + V + + Q K
Sbjct 115 GRDVIGIAETGSGKTLAFGLPCLKKIEDSKKKKSKPYQPMAVIISPTRELAMQIHDQLQK 174
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G +V I G ++ E +++ +I++ TP L +L+ L ++ D
Sbjct 175 FAGPVGAKVACIFGGVRKDEQRE-VLKTANIVVATPGRL-KDLQNDGSVDLGKVRYLVLD 232
Query 373 EC 374
E
Sbjct 233 EA 234
>sp|Q6FKN8|DBP5_CANGA ATP-dependent RNA helicase DBP5 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP5 PE=3 SV=1
Length=504
Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/183 (20%), Positives = 67/183 (37%), Gaps = 26/183 (14%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
QR E ++ ++ + D ++E K E LC E Y L +I+FV + + L
Sbjct 316 LQRNEVNVKAIKQLYMDCNDEAHKYEVLC----ELYGLLTIGSSIIFVAKKDTANLLYGK 371
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + ++ + + ++D F+ G +LI T+V GIDI
Sbjct 372 LKHE------------GHQVSILHSDLRTDERDRLIDDFR-EGRSKVLITTNVLARGIDI 418
Query 707 AQCNLVILYEYVG---------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
++V+ Y+ + I GR G + I Y
Sbjct 419 PSVSMVVNYDLPTLPNGMPDYATYVHRIGRTGRFGRTGVAISFVHDKKSFKILSAIQDYF 478
Query 758 EKM 760
+ +
Sbjct 479 KDI 481
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + + + A + Q V +
Sbjct 154 RNMIAQSQSGTGKTAAFSLTMLS--RVDETQNVPQAICLAPSRELARQTLEVIQEM---- 207
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + + N ++++ TP L++ +++ I L + + DE
Sbjct 208 GKYTKITTQLIVPDSFEKNTKINANVVVGTPGTLLDLIRRKLIQ-LQNVKIFVLDEA 263
>sp|Q6BLU9|PRP28_DEBHA Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592
GN=PRP28 PE=3 SV=2
Length=580
Score = 88.3 bits (217), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/142 (25%), Positives = 56/142 (39%), Gaps = 15/142 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
KL+ L IL+ N I+F + + L + + G T
Sbjct 419 KLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELS--------RKGF---SDNTVI 467
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
+ + A++ +D+F+ G ILIAT VA GIDI +LV+ Y+ I I
Sbjct 468 HGSKSQEARERAIDSFR-EGKDKILIATDVAARGIDIPNVSLVVNYQMTKKFDEYIHRIG 526
Query 727 TRGRGRARGSKCFLLTSNAGVI 748
GR +G+ C + +
Sbjct 527 RTGRAGNKGTSCTFIDDGDSEV 548
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 49/133 (37%), Gaps = 13/133 (10%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHL------------KKFPQGQKGKVVFFANQIP 301
A+ G++ + A TG GKT LL ++ ++ K + A
Sbjct 189 ALNGRDIVGIAETGSGKTLAFLLPLFSYILSVDSNYLLYEHQQESNFNKPLGLILAPTRE 248
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q + ++ V I G V + I++ TP L+++L++G I
Sbjct 249 LALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSLERGIIN 308
Query 362 SLSIFTLMIFDEC 374
LS DE
Sbjct 309 -LSNCYFFTMDEA 320
>sp|Q7RY59|RRP3_NEUCR ATP-dependent rRNA helicase rrp-3 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71
/ DSM 1257 / FGSC 987) OX=367110 GN=rrp-3 PE=3 SV=1
Length=515
Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 21/195 (11%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
I+F +T + + G G + G++ A+ L+ F+A G
Sbjct 333 IIIFTRTVLETQRIAILLRT------------LGMGAIPLHGGLSQSARLGALNKFRA-G 379
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGV 747
IL+AT VA G+DI + VI ++ + + GR RA + + + +
Sbjct 380 SREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDL 439
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+I +++ L+ + VF+ ++ Q H + ++ K ++
Sbjct 440 EIWLRIEAALGHKLDE--YPLEKDEVMVFKPRVEEAQRHAR----NEMKSLMENQGKHGG 493
Query 808 LLCRKCKALACYTAD 822
LL RK D
Sbjct 494 LLKRKRGNGQGGGRD 508
Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 43/121 (36%), Gaps = 2/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++ ++ I A TG GKT L L P V A + Q F
Sbjct 124 ALQNRDIIGIAETGSGKTAAFALPILQALLDKPAPLFALV--LAPTRELAAQIAQAFEAL 181
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R I G + + +I+ TP L+++L+K SL ++ DE
Sbjct 182 GSLISLRCALILGGMDMVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDE 241
Query 374 C 374
Sbjct 242 A 242
>sp|A6ZSX1|RRP3_YEAS7 ATP-dependent rRNA helicase RRP3 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=RRP3 PE=3
SV=1
Length=501
Score = 87.9 bits (216), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E I+F +T+A + L L T
Sbjct 308 KNTYLIYLLNEFIGKTM----IIFTRTKANAERLSGLCN------------LLEFSATAL 351
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI ++V+ Y+ + I G
Sbjct 352 HGDLNQNQRMGALDLFKA-GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVG 410
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R RA R K L S + E ++ + +L + E+V + IL ++
Sbjct 411 RTARAGRSGKSISLVSQYDL----------ELILRIEEVLGKKLPKESVDKNIILTLRDS 460
Query 787 ------EKFIRDSQEKPKPVPDKENKK 807
E + ++ + + + ++
Sbjct 461 VDKANGEVVMEMNRRNKEKIARGKGRR 487
Score = 73.7 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 62/160 (39%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
ED ++ SE + P + + KP Q + PA++G + I A TG GKT
Sbjct 76 EDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAF 135
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
+ + L + + A + +Q K F G R T I G
Sbjct 136 AIPILNRL--WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ III TP L+++L+ SL ++ DE
Sbjct 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEA 233
>sp|Q4HY71|DBP5_GIBZE ATP-dependent RNA helicase DBP5 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP5 PE=3 SV=1
Length=488
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/232 (19%), Positives = 83/232 (36%), Gaps = 38/232 (16%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
QR E ++ + + D ++N K + LC + Y L +++FVKTR ++
Sbjct 279 LQRSELTVKGISQMFIDCPDDNMKYDILC----KLYGLMTIGQSVIFVKTRDSASEIERR 334
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ + G + + + +L F+ G++ +LI T+V GID+
Sbjct 335 MVAD------------GHKVSALHAAFDGAERDNLLTKFR-QGENKVLITTNVLARGIDV 381
Query 707 AQCNLVILYEYV-----------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM 755
+ ++VI Y+ + I GR G + +I
Sbjct 382 SSVSMVINYDIPMKGRGDTEPDAETYLHRIGRTGRFGRVGVSISFVYDKKSFDALSKIAE 441
Query 756 YKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+ L + WDEA R K + I+ ++ + P K
Sbjct 442 MYGIDLVK--LDTEDWDEAEERVK--------EVIKKNRAQASYAPSATEPK 483
Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/119 (17%), Positives = 47/119 (39%), Gaps = 9/119 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY--FE 315
+N + + +G GKT + + F + + + + A + Q + V + F
Sbjct 115 RNMLAQSQSGTGKTAAFVTAILSRV-DFSKPDQPQALALAPSRELARQIEGVINAIGRFV 173
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I G PV +I+ TP +++ +++ + +S +++ DE
Sbjct 174 ENKKVAAAIPGVLPRGEPVRA-----SVIVGTPGTVMDIIRRRQLD-ISQLRVLVLDEA 226
>sp|Q0CDT1|DBP5_ASPTN ATP-dependent RNA helicase dbp5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp5
PE=3 SV=1
Length=487
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ Q E ++ ++ + D S+E K L + Y L +I+FVKTR
Sbjct 281 ANELTLQHEELTVEGIKQLYLDCSDEEDKYRTLVSL----YGLLTVGSSIIFVKTRQSAM 336
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + + G + G+ + ++D F+A G +LI T+V
Sbjct 337 EIEKRM------------VAEGHTVASLTGGIEGSQRDAVIDQFRA-GAAKVLITTNVLA 383
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID++ ++VI Y+ + I GR G + +
Sbjct 384 RGIDVSTVSMVINYDIPELHLPPNQPRQADFQTYLHRIGRTGRFGRVGVSISFV---SNR 440
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
E +N + K N SI R+ T D + I
Sbjct 441 DEWNMLNQIQ-KYFNTSIQRIDTKDWDEVEDII 472
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/119 (17%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KN + + +G GKT +L L + + + + A + Q V +
Sbjct 118 KNLVGQSQSGTGKTAAFVLNILSRLDLSTEQMQKTPQALILAPTRELARQIVGVI-QVMG 176
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + A+ +E + +++ TP +++ +KK I + +++ DE
Sbjct 177 QFLDNLIIGTAVPADTNNRPARMEAS-VVVGTPGTVMDMIKK-RIMVPAKLQVLVLDEA 233
>sp|A3GFI4|IF4A_PICST ATP-dependent RNA helicase eIF4A OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=TIF1 PE=3 SV=1
Length=397
Score = 86.8 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 70/181 (39%), Gaps = 17/181 (9%)
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ YN ++ E ++ + V + + L ++ E L+ ++ +
Sbjct 185 QIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE 244
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K + LC + Y T ++F TR+ V+ L ++
Sbjct 245 LEDYKFDCLC----DLYDSISVTQAVIFCNTRSKVEFLTTKLKAE--------NFTV--- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + + + I+ F+ SG ILIAT + GID+ Q +LVI Y+ N I
Sbjct 290 -SAIHADLPQAERDTIMKEFR-SGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYI 347
Query 726 Q 726
Sbjct 348 H 348
Score = 62.5 bits (150), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 69/211 (33%), Gaps = 16/211 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q LP +G++ + A +G GKT + + + + + A
Sbjct 45 TPSAIQQRAILPITEGRDVLAQAQSGTGKT--ATFTISALQRIDENEKSTQALILAPTRE 102
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K+V + V G T+ +E +++ TP + + +++
Sbjct 103 LALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYF- 161
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
+ I DE L + +++ T V + A
Sbjct 162 KTEKVKMFIMDEA-------------DEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQ 208
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQV 452
+ L+ K + ++ + LE ++Q
Sbjct 209 DVLEVTTKFMNNPVRILVKKDELTLEGIKQF 239
>sp|C3LQR1|RHLB_VIBCM ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain M66-2) OX=579112 GN=rhlB PE=3
SV=1
Length=438
Score = 87.1 bits (214), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 71/178 (40%), Gaps = 19/178 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ I + + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHR----CEQIWAHLAADNHRVGLLTG--------DVPQKKRERILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
GD +IL+AT VA G+ I Q V Y+ + + GR GRA S + +
Sbjct 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P + + + A + Q +
Sbjct 44 LSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ DI+I T +++ K+ + +L+ +
Sbjct 104 AEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ-RVFNLNHIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q9KV52|RHLB_VIBCH ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
OX=243277 GN=rhlB PE=3 SV=1
Length=438
Score = 87.1 bits (214), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 71/178 (40%), Gaps = 19/178 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ I + + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHR----CEQIWAHLAADNHRVGLLTG--------DVPQKKRERILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
GD +IL+AT VA G+ I Q V Y+ + + GR GRA S + +
Sbjct 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P + + + A + Q +
Sbjct 44 LSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ DI+I T +++ K+ + +L+ +
Sbjct 104 AEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ-RVFNLNHIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A5F3R4|RHLB_VIBC3 ATP-dependent RNA helicase RhlB OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa
395 / O395) OX=345073 GN=rhlB PE=3 SV=1
Length=438
Score = 87.1 bits (214), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 71/178 (40%), Gaps = 19/178 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEH-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ I + + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKHR----CEQIWAHLAADNHRVGLLTG--------DVPQKKRERILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
GD +IL+AT VA G+ I Q V Y+ + + GR GRA S + +
Sbjct 303 TQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA 360
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P + + + A + Q +
Sbjct 44 LSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ DI+I T +++ K+ + +L+ +
Sbjct 104 AEPLLASTGLKAALAYGGESYDKQLAKLQSGVDILIGTTGRIIDFYKQ-RVFNLNHIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q814I2|DBPA_BACCR ATP-dependent RNA helicase DbpA OS=Bacillus
cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152
/ NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900
GN=dbpA PE=2 SV=1
Length=481
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/376 (17%), Positives = 125/376 (33%), Gaps = 51/376 (14%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G TAS G+ + + + L + + VK ++ + + K +
Sbjct 53 GKTASFGIPLCEMVEWEENKPQALVLTPTRELAVQVKEDITNIGRF-----KRIKAAAVY 107
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
F +L + T + + L+++ + + + + +A + M
Sbjct 108 GKSPFARQKLELKQKTHIVVGTPGRVLDHIEKGTLSLECLK-----YLVIDEADEMLNMG 162
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
D+ I L + + A + + ++ L + N +
Sbjct 163 FIDQVEAIIDELPTKR---------MTMLFSATLPEDVEKLSRTYMNSPTHIEIKAAGIT 213
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
T + E L E+ E+ KL L + E + I+F +T+ VD +
Sbjct 214 TDKIEHTLFEVI--------EDEKLSLLKDVTTIENPDS----CIIFCRTQENVDHVYRQ 261
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ + + GM + ++D F+ G L+AT VA GIDI
Sbjct 262 LK--------RANY----PCDKIHGGMVQEDRFEVMDDFR-KGKFRYLVATDVAARGIDI 308
Query 707 AQCNLVILYEYVGNVIKMIQTRGR-GRARGS--KCFLLTSNAGVIEKEQINMYKEKMMND 763
VI Y+ + GR GRA S +T +E +E + +
Sbjct 309 DNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYENRFLEE----IEEYIGFE 364
Query 764 SILRLQTWDEAVFREK 779
+ E V +EK
Sbjct 365 IPKAIGPSKEEVMKEK 380
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E+ A++ K+ ++ + TG GKT + ++ + K + +
Sbjct 26 HPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEW--EENKPQALVLTPTRE 83
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K + + + G + ++ + I++ TP ++++++KGT+
Sbjct 84 LAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHIVVGTPGRVLDHIEKGTL- 142
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 143 SLECLKYLVIDEA 155
>sp|Q4IFI0|RRP3_GIBZE ATP-dependent rRNA helicase RRP3 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=RRP3 PE=3 SV=1
Length=486
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/189 (19%), Positives = 69/189 (37%), Gaps = 28/189 (15%)
Query 608 NP-KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
+P K L +++ E + TI+F +T + + G G
Sbjct 284 HPQKDVHLIYLINEHAGQS----TIVFTRTVWETQRVSILLRT------------LGFGA 327
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIK 723
+ ++ ++ L+ F+ SG +IL+AT VA G+DI ++V+ Y+ I
Sbjct 328 IPLHGQLSQSSRLGALNKFR-SGTRDILVATDVAARGLDIPSVDVVLNYDLPQDSKTYIH 386
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN-----DSILRLQTWDEAVFRE 778
+ R G L+T I +K+ + ++ Q+ +
Sbjct 387 RVGRTARAGKSGVAISLVTQYDLEIYLRIEAALGKKLAEYPTEKEEVMAFQS--RVEEAQ 444
Query 779 KILHIQTHE 787
+I I+
Sbjct 445 RIARIEMKS 453
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 46/121 (38%), Gaps = 2/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++G++ I A TG GKT L L PQ G V A + Q F
Sbjct 94 ALQGRDIIGLAETGSGKTAAFALPVLQALLDKPQPLFGLV--LAPTRELATQIGQAFEAL 151
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R I G + + I++ TP LV++L+K SL +I DE
Sbjct 152 GSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDE 211
Query 374 C 374
Sbjct 212 A 212
>sp|Q4WXW1|DBP8_ASPFU ATP-dependent RNA helicase dbp8 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp8 PE=3 SV=1
Length=526
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 16/154 (10%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L + I+F D L+ + T+ ++
Sbjct 337 EAFLHVLLSTEGNASKP-AIVFCNHTKTADLLERMLRRLS------------HRVTSLHS 383
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS IL+AT VA G+DI +LVI Y+ N + GR
Sbjct 384 LLPQSERNANLARFRAS-AARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRT 442
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
RA R + L V I + M +
Sbjct 443 ARAGRRGEAVTLVGQRDVQLVLAIEERVGRQMEE 476
Score = 63.3 bits (152), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/171 (19%), Positives = 59/171 (35%), Gaps = 7/171 (4%)
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPT 266
++I +E+ + + + P V + KP Q +KG++ I + T
Sbjct 85 DALEIGLREEA--SSFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRT 142
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + + P G G V + Q + I+G
Sbjct 143 GSGKTIAFSVPMLQKWAEDPFGIFG--VVLTPTRELALQIFEQIKAISAPQSMKPVLITG 200
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
T + ++I TP L +++K T+ L +++ DE
Sbjct 201 GTDMRPQAIALAGRPHVVIATPGRLADHIKSSGEDTVCGLKRVRMVVLDEA 251
>sp|A0KEG9|RHLB_AERHH ATP-dependent RNA helicase RhlB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187
/ BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB
9240 / NCTC 8049) OX=380703 GN=rhlB PE=3 SV=1
Length=429
Score = 86.8 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 99/290 (34%), Gaps = 38/290 (13%)
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
+M T LA +I D E++S + G Y Q A + + +
Sbjct 89 IMAPTRELAVQIYNDAESMSASTGLKLG-LAYGGEGYDKQLAVLEQGVDILIGTTGRIID 147
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKD--FFSNVRAAGFDEIEQDLTQRFEEKLQ 595
F +++ E RM D L ++KD F + + + ++Q
Sbjct 148 YFKSKVIDLSNIQVVVLDEADRMFD-LGFIKDIRFLFRRMPPATERLSMLFSATLSLRVQ 206
Query 596 ELESVSRDPSNE---NPKLEDLCFILQEEYHLNPE---------------TITILFVKTR 637
EL + P+ I +E ++ + E I+F T+
Sbjct 207 ELAYEHMNHPEHVQIEPEQMTGVRIKEELFYPSNEDKMLLLLSLMEEEWPEKAIVFANTK 266
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
+ + + W+E + + G+LTG + + IL+ F G +IL+AT
Sbjct 267 HVCEDVHAWLENDGH----RVGLLTG--------DVPQKKRMKILEDF-TKGTVDILVAT 313
Query 698 SVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
VA G+ I V Y+ + + I GR G L +
Sbjct 314 DVAARGLHIPDVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHSISLACED 363
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 48/124 (39%), Gaps = 6/124 (5%)
Query 256 KGKNTIICAPTGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+G + A TG GKT F++ + H L K + + + A + Q +
Sbjct 45 EGHDLAGQAQTGTGKTLAFLAATFNYLLTHPLTKPRLINQPRAIIMAPTRELAVQIYNDA 104
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
G ++ G + + + + DI+I T +++ K I LS +++
Sbjct 105 ESMSASTGLKLGLAYGGEGYDKQLAVLEQGVDILIGTTGRIIDYFKSKVID-LSNIQVVV 163
Query 371 FDEC 374
DE
Sbjct 164 LDEA 167
>sp|Q1EB85|DBP5_COCIM ATP-dependent RNA helicase DBP5 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP5 PE=3 SV=1
Length=495
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/389 (15%), Positives = 119/389 (31%), Gaps = 53/389 (14%)
Query 387 MFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNL 446
M K+ + PL L A+ + ++ + + T +
Sbjct 110 MNFRRPSKIQERALPL-----LMANPPTNMIAQSQSGTGKTAAFVLNILSRLELTPEKQK 164
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
PQ ++ + +I + E L +++ Q E
Sbjct 165 --------SPQALVLAPSRELARQIVGVIQAMGTFVEGLFVATAV-PMEMNRNQRVEASI 215
Query 507 -----QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
+ I ++ DE + L +R + ++ ++
Sbjct 216 VVGTPGTVQDLIKKRLFNTQHLRVLVLDEADNMLDQQGLGDQCIRVKS---LLPRTIQVV 272
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
DF Q + E ++ ++ + D ++ K E IL +
Sbjct 273 LFSATFPDFVVRYAHKFAPNSNQLTLKHEELTVEGIKQLYLDCESDEHKYE----ILVKF 328
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
Y L +I+FVKTRA ++ + + G + G+ + I
Sbjct 329 YGLLTIGSSIIFVKTRASAAEIERRM------------VAEGHTVVSLTGGIEGQKRDEI 376
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG--------------NVIKMIQT 727
+D F+ +G +LI T+V GID++ ++VI Y+ + I
Sbjct 377 IDRFR-NGTAKVLITTNVLARGIDVSTVSMVINYDIPELHLPGAARRMADAQTYLHRIGR 435
Query 728 RGRGRARGSKCFLLTSNAGVIEKEQINMY 756
GR G +++ + I Y
Sbjct 436 TGRFGRVGVAVSFVSNQEEWQMLQDIQKY 464
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/117 (19%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFERH 317
N I + +G GKT +L L+ P+ QK + + A + Q V +
Sbjct 133 NMIAQSQSGTGKTAAFVLNILSRLELTPEKQKSPQALVLAPSRELARQIVGVI-QAMGTF 191
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + E +++ + I++ TP + + +KK + + +++ DE
Sbjct 192 VEGLFVATAVPMEMNRNQRVEAS--IVVGTPGTVQDLIKK-RLFNTQHLRVLVLDEA 245
>sp|Q75EW9|RRP3_EREGS ATP-dependent rRNA helicase RRP3 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=RRP3 PE=3 SV=2
Length=486
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 19/137 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E TI+F +T+A + + L T
Sbjct 293 KNTFLIYLLNEFIGKT----TIVFTRTKANAERISGLCN------------LLEFSATAL 336
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI +LVI Y+ + I G
Sbjct 337 HGDLNQNQRTGALDLFKA-GKKSILVATDVAARGLDIPSVDLVINYDIPVDSKSYIHRVG 395
Query 730 R-GRA-RGSKCFLLTSN 744
R RA R K L S
Sbjct 396 RTARAGRSGKSVSLVSQ 412
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/180 (24%), Positives = 68/180 (38%), Gaps = 4/180 (2%)
Query 197 TEDLEDKMETSDIQIFYQEDPEC--QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
TE+ ET I +PE + E P + + + KP Q + PA
Sbjct 41 TEEANTASETEAAVIEETAEPEEGFSSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPA 100
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GK+ I A TG GKT + + L + Q A + +Q K F
Sbjct 101 LQGKDIIGLAQTGSGKTAAFAIPILNRL--WHDQQPYYACILAPTRELAQQIKETFDSLG 158
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G R T I G ++ III TP L+++L+ +L ++ DE
Sbjct 159 SLMGVRTTCIVGGMNMMDQARDLMRKPHIIIATPGRLMDHLENTKGFALRKLQFLVMDEA 218
>sp|A3LQW7|DBP2_PICST ATP-dependent RNA helicase DBP2 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP2 PE=3 SV=1
Length=530
Score = 87.5 bits (215), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/249 (19%), Positives = 85/249 (34%), Gaps = 28/249 (11%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +RK D + M A + N+ + Q E
Sbjct 259 MGFEPQIRKIVDQIRPDRQTLMWSATWPKE--VQNLARDYLQDPIQVRIGSLELAASHTI 316
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
+ + +E K + L L E E+ ++F T+ D + +++ +
Sbjct 317 TQVVEVISEYEKRDRLVKHL-ETATTEKESKVLIFASTKKTCDEVTSYLRAD-------- 367
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G + + +L FK +G I++AT VA GID+ N VI ++
Sbjct 368 ----GWPALAIHGDKQQSERDWVLREFK-TGKSPIMVATDVAARGIDVKGINFVINFDMP 422
Query 719 GNVIKMIQTR---GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSIL----RLQTW 771
GN+ + GRG A G+ T + + K+M ++ LQ +
Sbjct 423 GNIEDYVHRIGRTGRGGATGTAVSFFTDGNNKLGGDLC-----KIMREAKQTIPPELQRF 477
Query 772 DEAVFREKI 780
D F I
Sbjct 478 DRKSFGAHI 486
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/183 (21%), Positives = 67/183 (37%), Gaps = 5/183 (3%)
Query 196 ETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPA 254
+D+ + + P + + P V + F P Q + A
Sbjct 72 SDKDIAAFRNEHQMSCLGSDIPHPITTFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMA 131
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT L H+ P G V+ A + Q + S
Sbjct 132 LSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQQECS 191
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K+ R T + G + + + +I+I TP L++ L+ G +L T ++
Sbjct 192 KFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGK-TNLKRVTYLVL 250
Query 372 DEC 374
DE
Sbjct 251 DEA 253
>sp|Q6CZD9|RHLB_PECAS ATP-dependent RNA helicase RhlB OS=Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491
GN=rhlB PE=3 SV=3
Length=430
Score = 86.8 bits (213), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/178 (22%), Positives = 67/178 (38%), Gaps = 19/178 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ + PSNE K+ L +L+EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRITEELFYPSNE-EKMRLLQTLLEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + IL+ F
Sbjct 258 --RCIIFANTKHRCEDV----WGHLAADGHRVGLLTG--------DVAQKKRLRILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
G +IL+AT VA G+ I V Y+ + + GR GRA S + +
Sbjct 303 TQGSIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGFSISLA 360
Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H Q + + + A + Q S G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI++ T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLENGVDILVGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A5DB98|IF4A_PICGU ATP-dependent RNA helicase eIF4A OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=TIF1 PE=3
SV=1
Length=396
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/320 (17%), Positives = 108/320 (34%), Gaps = 43/320 (13%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G TA+ + + DE L L + + +++ + + + V +
Sbjct 71 GKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLN------VTVHAS 124
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
I + + +S + + + + R F +F M
Sbjct 125 IG---GTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRT----------DKVKMFIMD 171
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
+ DE + YN ++ E ++ + V + + L
Sbjct 172 EADEMLSSGFKE-------QIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRIL 224
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ E L+ ++ + E+ K + LC + Y T ++F TR+ V+ L
Sbjct 225 VKKDELTLEGIKQFYINVEQEDFKFDCLC----DLYDSISVTQAVIFCNTRSKVEFLTTK 280
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ + + + + I++ F+ SG ILIAT + GID+
Sbjct 281 LKAE--------NFTV----SAIHADLPQSDRDTIMNEFR-SGSSRILIATDLLARGIDV 327
Query 707 AQCNLVILYEYVGNVIKMIQ 726
Q +LVI Y+ N I
Sbjct 328 QQVSLVINYDLPANKENYIH 347
Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 68/206 (33%), Gaps = 16/206 (8%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q LP +G++ + A +G GKT + + + + + A + Q
Sbjct 49 QQRAILPITEGRDVLAQAQSGTGKT--ATFTISALQRIDENLKATQALILAPTRELALQI 106
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + V G T+ +E I++ TP + + +++
Sbjct 107 QNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFF-RTDKV 165
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDY 426
+ I DE L + +++ T V + A + L+
Sbjct 166 KMFIMDEA-------------DEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEV 212
Query 427 ICKLCASLDASVIATVKHNLEELEQV 452
K + ++ + LE ++Q
Sbjct 213 TTKFMNNPVRILVKKDELTLEGIKQF 238
>sp|Q0CIQ3|RRP3_ASPTN ATP-dependent rRNA helicase rrp3 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rrp3
PE=3 SV=2
Length=445
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 74/201 (37%), Gaps = 22/201 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + I+F +T L + G
Sbjct 253 KDFYLVYLLNE----RAGQMGIIFTRTVHETQRLSIMLRN------------LGFPAIPI 296
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ A+ L+ F+A N+LIAT VA G+DI + V+ Y+ + I G
Sbjct 297 HGQLSQSARLASLNKFRARSR-NLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVG 355
Query 730 R-GRARGSKCFL-LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA S + V +I K + + + + + +F E++ Q
Sbjct 356 RTARAGKSGIAFSFVTQYEVELWLRIEDALGKKVEE--YKPEKDEVMIFAERVNDAQRVA 413
Query 788 KF-IRDSQEKPKPVPDKENKK 807
+RD Q+K N+K
Sbjct 414 ALTMRDMQDKDNKGRGPRNRK 434
Score = 72.9 bits (177), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 47/121 (39%), Gaps = 2/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++G++ I A TG GKT +L L PQ + A + +Q
Sbjct 62 ALEGRDLIGLAETGSGKTAAFVLPMLQALMDKPQQFHSLI--LAPTRELAQQIAHTVEAL 119
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R R T + G + + +I+ TP L+++L+ SL ++ DE
Sbjct 120 GARISVRCTLLIGGMDMISQAIALGKKPHVIVATPGRLLDHLENTKGFSLRTLKYLVLDE 179
Query 374 C 374
Sbjct 180 A 180
>sp|Q7MYL2|RHLB_PHOLL ATP-dependent RNA helicase RhlB OS=Photorhabdus
laumondii subsp. laumondii (strain DSM 15139 / CIP 105565
/ TT01) OX=243265 GN=rhlB PE=3 SV=1
Length=428
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/243 (18%), Positives = 84/243 (35%), Gaps = 20/243 (8%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ + PSNE K+ L +L+EE+
Sbjct 201 LSYRVRELAFEQMNHAEYIEVEPLQKTGHRIREELFYPSNE-EKMRLLQTLLEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + + + + G+LTG + + IL+ F
Sbjct 258 --RCIIFANTKHRCEDIWAHLAADGH----RVGLLTG--------DVAQKKRLRILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSN 744
++G+ +IL+AT VA G+ I V Y+ + + GR G L
Sbjct 303 SNGNIDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLACE 362
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
+ I Y + + S Q + + K + R + + +
Sbjct 363 EYALNLPAIEDYIQHSIPVSKYNSQALLKDLPAPKRRYRSRSGNHQRRNNLSHRNNTPRN 422
Query 805 NKK 807
N+K
Sbjct 423 NRK 425
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASAFHYLLTHPAAEERQTNQPRALIMAPTRELAVQIYSDAEDLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+G I L+ +++ DE
Sbjct 115 MGLAYGGDGYDKQLKILESGVDILIGTTGRLIDYTKQGHIN-LNAVQVVVLDEA 167
>sp|Q0HQL1|RHLB_SHESR ATP-dependent RNA helicase RhlB OS=Shewanella
sp. (strain MR-7) OX=60481 GN=rhlB PE=3 SV=1
Length=439
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (9%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQD-LTQRFEEKLQELESVSRDPSNE--NPKLEDLC 615
RM +A L FS + E+ D + + ++ E S++ E P ED
Sbjct 185 RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKI 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ IL+ F G +IL+AT VA G+ I+ + V Y+ + + GR G
Sbjct 293 KKRIRILEQF-TQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 736 SK 737
+K
Sbjct 352 NK 353
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 53/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SL+ +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGII-SLNAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q0HN76|RHLB_SHESM ATP-dependent RNA helicase RhlB OS=Shewanella
sp. (strain MR-4) OX=60480 GN=rhlB PE=3 SV=1
Length=439
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 16/182 (9%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQD-LTQRFEEKLQELESVSRDPSNE--NPKLEDLC 615
RM +A L FS + E+ D + + ++ E S++ E P ED
Sbjct 185 RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKI 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ IL+ F G +IL+AT VA G+ I+ + V Y+ + + GR G
Sbjct 293 KKRIRILEQF-TQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 736 SK 737
+K
Sbjct 352 NK 353
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 53/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I SL+ +
Sbjct 104 AILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGII-SLNAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis
thaliana OX=3702 GN=RH21 PE=2 SV=1
Length=733
Score = 87.9 bits (216), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
K +L S E+ K L +L E I+FV T+ D++ ++
Sbjct 546 KTTDLISQHVIMMKESEKFFRLQKLLDELGEKT----AIVFVNTKKNCDSIAKNLDK--- 598
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G T + G + ++ L+ F+A +N+L+AT V GIDI V
Sbjct 599 ---------AGYRVTTLHGGKSQEQREISLEGFRAK-RYNVLVATDVVGRGIDIPDVAHV 648
Query 713 ILYEYVGN---VIKMIQTRGRGRARGSKCFLLT 742
I Y+ + I GR G LT
Sbjct 649 INYDMPKHIEMYTHRIGRTGRAGKSGVATSFLT 681
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 16/247 (6%)
Query 135 ECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKD 194
E E +I G++ E+ +R + + + + +++ + +K +++
Sbjct 235 EKEMRDEIRKKDGIVEKPEEAAAQRVREEAADTYDSFDMRVDRHWS--------DKRLEE 286
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALP 253
+ D E +I P E S SE+ + +K P Q+
Sbjct 287 MTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQQK 307
++ ++ I A TG GKT +L ++ + P + + V A + +Q +
Sbjct 347 GLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G+RVT I G + +I + +I+I TP L++ L++ L+
Sbjct 407 EETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRY-AVLNQCN 465
Query 368 LMIFDEC 374
++ DE
Sbjct 466 YVVLDEA 472
>sp|P42305|DBPA_BACSU ATP-dependent RNA helicase DbpA OS=Bacillus
subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2
Length=479
Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/165 (22%), Positives = 61/165 (37%), Gaps = 18/165 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ E + + +E EN K L +L E + I+
Sbjct 191 KLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDS----CII 245
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F +T+ V+ L + ++ G + GM + +++ FK G++
Sbjct 246 FCRTKEHVNQLTDELDD------------LGYPCDKIHGGMIQEDRFDVMNEFKR-GEYR 292
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
L+AT VA GIDI +LVI Y+ + GR G+K
Sbjct 293 YLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNK 337
Score = 66.0 bits (159), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 58/133 (44%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q + A++ K+ ++ + TG GKT + K + +
Sbjct 24 EPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWD--ENKPQALILTPTRE 81
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K + + T + G ++ + ++ + + I++ TP ++++++KGT+P
Sbjct 82 LAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQKSHIVVGTPGRVLDHIEKGTLP 141
Query 362 SLSIFTLMIFDEC 374
L + ++ DE
Sbjct 142 -LDRLSYLVIDEA 153
>sp|Q2U8K6|DBP5_ASPOR ATP-dependent RNA helicase dbp5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp5
PE=3 SV=1
Length=487
Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 31/224 (14%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ Q E ++ ++ + D S+E K + L + Y L +I+FVKTRA
Sbjct 281 ANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQL----YGLLTVASSIIFVKTRASAA 336
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + + G + G+ + ++D F+A G +LI T+V
Sbjct 337 EIEKRM------------VAEGHTVASLTGGIEGSQRDAVIDQFRA-GQAKVLITTNVLA 383
Query 702 EGIDIAQCNLVILYEYVG--------------NVIKMIQTRGRGRARGSKCFLLTSNAGV 747
GID++ ++VI Y+ + I GR G +++
Sbjct 384 RGIDVSTVSMVINYDIPELHQPGAPERQADFQTYLHRIGRTGRFGRVGVSISFVSNREEW 443
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
QI Y + + E + ++ I + + +F R
Sbjct 444 NMLNQIQQYFNCTIQRVDTKDWDEVEDIIKKTIKNTRAQAQFGR 487
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKF--PQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
KN + + +G GKT +L L + + + A + Q V +
Sbjct 118 KNLVGQSQSGTGKTAAFVLNALSRLDLSTEQAQKTPQALILAPTRELARQIVGVI-QCMG 176
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + A+ +E++ +++ TP +++ ++K + + + +++ DE
Sbjct 177 QFLDGLNVSTAVPADTNSRHSKIESS-VVVGTPGTVMDMIRKRVMVA-NKLKVLVLDEA 233
>sp|Q4WJE9|RRP3_ASPFU ATP-dependent rRNA helicase rrp3 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC
A1100 / Af293) OX=330879 GN=rrp3 PE=3 SV=1
Length=472
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 40/210 (19%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + TI+F +T + + G G
Sbjct 279 KDIYLVYLLNEFVGQS----TIIFTRTVHETQRISFLLRS------------LGFGAIPL 322
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ A+ L F++ +IL+AT VA G+DI ++V+ ++ + + G
Sbjct 323 HGQLSQSARLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVG 381
Query 730 ---RGRARGSKCFLLTSNAGVI-----------------EKEQINMYKEKM---MNDSIL 766
R G +T I EK+++ + E++ +I+
Sbjct 382 RTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIM 441
Query 767 RLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
++ +DE + + QE+
Sbjct 442 EMKNFDEKRGTKAKKFGKGKRSRDEMDQEE 471
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/180 (22%), Positives = 63/180 (35%), Gaps = 11/180 (6%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+ET+D E+ +++ L E + T + Q E A
Sbjct 36 LETQDEATATESRPAPKSFKDLGIIDQLCEACETMGYKAPTPI---------QAESIPLA 86
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ I A TG GKT L L + PQ G + A + Q F
Sbjct 87 LQGRDLIGLAETGSGKTAAFALPILQALMENPQSFFGLI--LAPTRELAFQISKSFESLG 144
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R I G + + II+ TP L+++L+ SL ++ DE
Sbjct 145 STINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEA 204
>sp|B7VME9|RHLB_VIBA3 ATP-dependent RNA helicase RhlB OS=Vibrio
atlanticus (strain LGP32) OX=575788 GN=rhlB PE=3 SV=1
Length=436
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/292 (19%), Positives = 109/292 (37%), Gaps = 46/292 (16%)
Query 478 LMRDTESLAKRICKDLENL----SQIQNREFGTQKYEQWIVTVQKACMVF---------- 523
+M T LA +I D ++L +G + Y++ + +++ +
Sbjct 89 IMAPTRELAIQIYNDADSLVASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIIDF 148
Query 524 ---QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD 580
++ + + + L D + RM + D L FS +
Sbjct 149 YKQKVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFR--RMPEPKDRLNMLFSATLSYRVQ 206
Query 581 E--------IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
E E + + + ++ PSNE+ K+ L +++EE+ I+
Sbjct 207 ELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSNEH-KMALLQTLIEEEWPD----RAII 261
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F T+ +++ G+ + G+LTG + ++ IL+ F GD +
Sbjct 262 FANTKHKCESV----WGHLAADGHRVGLLTG--------DVPQKKREKILEQF-TKGDVD 308
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
+L+AT VA G+ I Q V ++ + + GR GRA S + +
Sbjct 309 LLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA 360
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 51/125 (41%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL K P+ + K + A + Q +
Sbjct 44 LTGQDIAGQAQTGTGKTLAFLTATFNHLLKTPEHEGRKPNQPRAIIMAPTRELAIQIYND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + +I E DI+I T +++ K+ + +L+ +
Sbjct 104 ADSLVASTGIKAALAYGGESYDKQLGKIEEGADILIGTTGRIIDFYKQ-KVFNLNHIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A5D7C1|DDX52_BOVIN Probable ATP-dependent RNA helicase DDX52
OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1
Length=596
Score = 87.5 bits (215), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/334 (16%), Positives = 120/334 (36%), Gaps = 43/334 (13%)
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ--IQNREFG 505
+ +++ Q + + I + + +Q+ R+ L++ + + + + ++FG
Sbjct 218 SIPILMHLKQPTNKGFRALIISPTRELASQIHRELVKLSEGTGFRIHMIHKAAVAAKKFG 277
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD--A 563
+ +++ + V + + +D L + +D L +D A
Sbjct 278 PKSSKKFDILVTTPNRLIYLLKQDPPG---IDLTSVEWLVVDESDKLFEDGKTGFRDQLA 334
Query 564 LDYLKDFFSNVRAAGFDEI-EQDLTQRFEEKLQELESVSRDP---------------SNE 607
+L V+ A F D+ Q L + +VS +E
Sbjct 335 SIFLACTSHKVKRAMFSATFAYDVEQWCRLNLDSVITVSVGARNSAVETVEQELLFVGSE 394
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
KL + ++++ ++ ++FV++ L + + I G
Sbjct 395 TGKLLAMRELVKKGFNPP----VLVFVQSIERAKELFHEL------------IYEGINVD 438
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKM 724
+ T + + +F+A G +LI T++ GID NLVI Y++ + I
Sbjct 439 VIHADRTQQQRDNTVHSFRA-GKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHR 497
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
I GR +G T + + + N+ ++
Sbjct 498 IGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQ 531
Score = 66.0 bits (159), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 6/158 (4%)
Query 220 QNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
Q L + S + L + F+ P Q++ + G+ + APTG GKT +
Sbjct 162 QQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPI 221
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQI 337
HLK+ P + + + + + Q K E G+R+ I A A +
Sbjct 222 LMHLKQ-PTNKGFRALIISPTRELASQIHRELVKLSEGTGFRIHMIHKAAVAAKKFGPKS 280
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTL--MIFDE 373
+ DI++ TP L+ LK+ P + + ++ ++ DE
Sbjct 281 SKKFDILVTTPNRLIYLLKQ-DPPGIDLTSVEWLVVDE 317
>sp|A3Q9R3|RHLB_SHELP ATP-dependent RNA helicase RhlB OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) OX=323850 GN=rhlB
PE=3 SV=1
Length=435
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 19/192 (10%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE-KLQELESVSRDPSNE--NPKLEDLC 615
RM DA + L FS + E+ D E+ ++ E S++ + E P +ED
Sbjct 185 RMPDANERLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSMEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGR 732
+ IL+ F G+ +IL+AT VA G+ I+ + V Y+ + + I GR
Sbjct 293 KKRIRILEQF-TKGELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 733 ARGSKCFLLTSN 744
+G
Sbjct 352 QKGVSVSFACEE 363
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 51/125 (41%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P + + A + Q
Sbjct 44 LEHKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPDGRQLNQPRAIVMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G +V + G + V + + + DI+I T +++ +++G I LS +
Sbjct 104 GELLAKHTGLKVGIVYGGESYEVQRKVLDKGVDILIGTTGRIIDYVRQGVIN-LSAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A5DIX5|ROK1_PICGU ATP-dependent RNA helicase ROK1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=ROK1 PE=3
SV=2
Length=537
Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 75/203 (37%), Gaps = 21/203 (10%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTG 663
NE KL + ++Q+ P I+F+++ AL I + +
Sbjct 333 GNEEGKLLAIRQMVQQGEFKPP---IIIFLQSIPRAKALFHELIYDKLNVEVI------- 382
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN--- 720
+ T ++ + FK +GD +LI T V G+D NLVI Y+
Sbjct 383 ------HAERTPKQREEAIRRFK-NGDAWVLITTDVLARGVDFKGVNLVINYDVPQTSQA 435
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
+ I GRG G T + K +N+ K+ ++ E + +++
Sbjct 436 YVHRIGRTGRGGKEGKAVTFFTKEDKLAIKPVLNVMKQSGCHEGYSEWMESMEKLTKKEK 495
Query 781 LHIQTHEKFIRDSQEKPKPVPDK 803
I+ HE + P+ V K
Sbjct 496 QQIKQHEIKRKKISTVPQVVSKK 518
Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 88/241 (37%), Gaps = 27/241 (11%)
Query 160 LRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPE- 218
++S+ +N K + +L ++ K ++ + K + + + E + E E+
Sbjct 23 VKSESQNATKDKQNSLLRQVEKETDFFNTRKHTEVTKDIEDEAQDEAVPPPKITTEEDAA 82
Query 219 ---CQNLSENSCPPSEVS-------------DTNLYSPFKPRNY------QLELALPAMK 256
QN S + + L + Y Q E + +
Sbjct 83 KLRKQNKVNVSGTDIPLPIGSFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAE 142
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFSKYF 314
G++ I CAPTG GKT L+ L P+ + + V A + Q +
Sbjct 143 GRDLIACAPTGSGKTLAYLIPMAQALISSPKTKNYGIRGVVIAPTNELAIQIYQTLAPMC 202
Query 315 ERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
VT +S A + I N D++I TP L++ +KK + LS ++ DE
Sbjct 203 RGSNLNVTLLSKQVASKISSSIISANKFDVLICTPLRLIDLVKKEQVD-LSKVEHLVIDE 261
Query 374 C 374
Sbjct 262 A 262
>sp|A4RGD1|RRP3_PYRO7 ATP-dependent rRNA helicase RRP3 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=RRP3 PE=3 SV=1
Length=538
Score = 87.1 bits (214), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/370 (16%), Positives = 118/370 (32%), Gaps = 30/370 (8%)
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
T L L+ ++ KPQ F V + + I S++ R + L +
Sbjct 160 KTAAFALPILQSLLEKPQPLFGLVLAPTRELAAQIGQTFEALGASISLRCAVVVGGLDMV 219
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+K + T + + + + L D I +
Sbjct 220 SQSTALGKKPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDEADRLLDL-DFGPILDKIL 278
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQD------LTQRFEEKLQELESVSRDPSNENPKLED 613
+ FS ++ + +++ + + + ++ ++P K +D
Sbjct 279 KFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSVSSSQEKTVSTLIQNPLFIPHKHKD 338
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+ I T I+F +T + + G + +
Sbjct 339 VYLIYLANEFAGKTT--IVFTRTVNEAQRVSILLRTLS------------FGAIPLHGQL 384
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGR 730
+ + L+ FKA +IL+AT VA G+DI + +LVI ++ I + R
Sbjct 385 SQSMRLGALNKFKARSR-DILVATDVAARGLDIPEVDLVINFDMPQDSMTYIHRVGRTAR 443
Query 731 GRARGSKCFLLTSNAGV----IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
G ++T IEK +N K + + + E V + H +
Sbjct 444 AGRSGRAISIITQYDLELWLRIEKAALNGRKLPLFQPDKEEVMVFKERVEEAQ-RHAREE 502
Query 787 EKFIRDSQEK 796
K + + + K
Sbjct 503 MKALHEDRGK 512
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 65/181 (36%), Gaps = 2/181 (1%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
D T +E+ + ++ +E+ ++ + KP Q +
Sbjct 84 DDSTPTVEEATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPL 143
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++G++ I A TG GKT L L + PQ G V A + Q F
Sbjct 144 ALQGRDVIGIAETGSGKTAAFALPILQSLLEKPQPLFGLV--LAPTRELAAQIGQTFEAL 201
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R + G + + I++ TP L+++L+K SL ++ DE
Sbjct 202 GASISLRCAVVVGGLDMVSQSTALGKKPHIVVATPGRLLDHLEKTKGFSLRSLKFLVMDE 261
Query 374 C 374
Sbjct 262 A 262
>sp|Q6BRE4|DBP5_DEBHA ATP-dependent RNA helicase DBP5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP5 PE=3 SV=1
Length=493
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 65/164 (40%), Gaps = 26/164 (16%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ E ++ ++ + D + N K E +L E Y L +I+FVKT+ + L
Sbjct 305 LKQEELNVEGIKQLYMDCDSANHKFE----VLSELYGLLTIGSSIIFVKTKDTANILYAK 360
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + + G+ + ++D F+ G +LI T+V GIDI
Sbjct 361 MKKE------------GHKCSILHAGLETSERDRLIDDFR-EGRSKVLITTNVLARGIDI 407
Query 707 AQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLL 741
A ++V+ Y+ + I GR G +
Sbjct 408 ASVSMVVNYDLPVDQKGAPDPSTYLHRIGRTGRFGRVGVSISFV 451
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
KN I + +G GKT L + + + A + Q V + +
Sbjct 143 KNMIGQSQSGTGKTAAFSLTMLS--RVDESDPNTQCICLAPARELARQTLEVITTMSKF- 199
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
S + +++ TP L++ +++ I + S + + DE
Sbjct 200 ---TKITSQLIVPDAMQRGQSTCAHVLVGTPGTLLDLIRRKLINT-SKVKVFVLDEA 252
>sp|B1JQ11|RHLB_YERPY ATP-dependent RNA helicase RhlB OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800
GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|Q66G19|RHLB_YERPS ATP-dependent RNA helicase RhlB OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) OX=273123
GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|A4TRC8|RHLB_YERPP ATP-dependent RNA helicase RhlB OS=Yersinia
pestis (strain Pestoides F) OX=386656 GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|Q1CNK3|RHLB_YERPN ATP-dependent RNA helicase RhlB OS=Yersinia
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rhlB PE=3
SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|Q8ZAD8|RHLB_YERPE ATP-dependent RNA helicase RhlB OS=Yersinia
pestis OX=632 GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|B2K046|RHLB_YERPB ATP-dependent RNA helicase RhlB OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) OX=502801
GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|Q1CBQ4|RHLB_YERPA ATP-dependent RNA helicase RhlB OS=Yersinia
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rhlB PE=3
SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|A7FD47|RHLB_YERP3 ATP-dependent RNA helicase RhlB OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758) OX=349747
GN=rhlB PE=3 SV=1
Length=428
Score = 86.4 bits (212), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPSVDKRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPLQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEEI----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + IL+ F GD +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILEDF-TKGDLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query 266 TGCGKT--FVSLL---ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT F++ + H ++ Q + + + A + Q S + G +
Sbjct 55 TGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLSQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNYIN-LGAIQVVVLDEA 167
>sp|P38712|RRP3_YEAST ATP-dependent rRNA helicase RRP3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=RRP3 PE=1 SV=2
Length=501
Score = 86.8 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E I+F +T+A + L L T
Sbjct 308 KNTYLIYLLNEFIGKTM----IIFTRTKANAERLSGLCN------------LLEFSATAL 351
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + LD FKA G +IL+AT VA G+DI ++V+ Y+ + I G
Sbjct 352 HGDLNQNQRMGSLDLFKA-GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVG 410
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R RA R K L S + E ++ + +L + E+V + IL ++
Sbjct 411 RTARAGRSGKSISLVSQYDL----------ELILRIEEVLGKKLPKESVDKNIILTLRDS 460
Query 787 ------EKFIRDSQEKPKPVPDKENKK 807
E + ++ + + + ++
Sbjct 461 VDKANGEVVMEMNRRNKEKIARGKGRR 487
Score = 73.7 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 39/160 (24%), Positives = 62/160 (39%), Gaps = 2/160 (1%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
ED ++ SE + P + + KP Q + PA++G + I A TG GKT
Sbjct 76 EDESFESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAF 135
Query 275 LLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV 334
+ + L + + A + +Q K F G R T I G
Sbjct 136 AIPILNRL--WHDQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQA 193
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ III TP L+++L+ SL ++ DE
Sbjct 194 RDLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEA 233
>sp|B5XYY9|RHLB_KLEP3 ATP-dependent RNA helicase RhlB OS=Klebsiella
pneumoniae (strain 342) OX=507522 GN=rhlB PE=3 SV=1
Length=421
Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/181 (23%), Positives = 68/181 (38%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +L+EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLLEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G+ L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 50/125 (40%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++G++ A TG GKT L H+L P Q + + + A + Q +
Sbjct 44 LEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHAD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G ++ G + ++ + DI+I T L++ K+ I L ++
Sbjct 104 AEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A0KS84|RHLB_SHESA ATP-dependent RNA helicase RhlB OS=Shewanella
sp. (strain ANA-3) OX=94122 GN=rhlB PE=3 SV=1
Length=439
Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/239 (20%), Positives = 89/239 (37%), Gaps = 17/239 (7%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ L+ L +++ + + E +E S + P
Sbjct 181 FLFRRMPSADQRLNMLFSATLSMKVQELAYDHMNEPVKVEIAPEEKTSKNIKEEIFYPSQ 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
ED +L + I+F T+ + L +W+EG+ + G+LTG
Sbjct 241 EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
+ + IL+ F G +IL+AT VA G+ I+ + V Y+ + + GR
Sbjct 289 DVPQKKRIRILEQF-TQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 732 RARGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
G+K S + E+ +N+ E +N SI +A+ + ++ H +
Sbjct 348 GRAGNKGV---SVSFACEEYALNLPAIETYINHSIPVSNYDRDALLEDIPPPVKIHRRH 403
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P Q + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I L +
Sbjct 104 AILLAKHSHLKVGIVYGGESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIIN-LGGIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q10202|DBP3_SCHPO ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp3
PE=3 SV=1
Length=578
Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/172 (20%), Positives = 66/172 (38%), Gaps = 21/172 (12%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN-PETITILFVKTRALVDALKNWIEG 649
+ + ++ + DP K L +L++ + ++FV + ++ +
Sbjct 383 SQNITQIVEILDDP---RSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLAR 439
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 709
K ++ G M+ A+ L+ FK SG +L+AT VA G+DI +
Sbjct 440 -------KYNVVGIHGD------MSQGARLQALNDFK-SGKCPVLVATDVAARGLDIPKV 485
Query 710 NLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
LVI + + I GR +G+ T E +N+ ++
Sbjct 486 QLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQ 537
Score = 59.8 bits (143), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (39%), Gaps = 3/121 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIPVYEQQKSVFSKY 313
+ G++ + A TG GKT + +L + +V+ + + Q +
Sbjct 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ + + G A + +N +II TP L++ + G+I S ++ DE
Sbjct 260 IQGTNLKAVVVYGG-APKSEQARAAKNASVIIGTPGRLLDLINDGSIDC-SQVGYLVLDE 317
Query 374 C 374
Sbjct 318 A 318
>sp|P10081|IF4A_YEAST ATP-dependent RNA helicase eIF4A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=TIF1 PE=1 SV=3
Length=395
Score = 85.6 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + L ++ E L+ ++ + E K E L + Y T ++
Sbjct 210 EVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECL----TDLYDSISVTQAVI 265
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + + + + + + I+ F+ SG
Sbjct 266 FCNTRRKVEELTTKLRNDKFTV------------SAIYSDLPQQERDTIMKEFR-SGSSR 312
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 313 ILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/422 (14%), Positives = 145/422 (34%), Gaps = 48/422 (11%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+ E+ + + + + + +NL Y +P Q +P
Sbjct 6 TDIEESQIQTNYDKVVYKFDDMELDENLLR---------GVFGYGFEEPSAIQQRAIMPI 56
Query 255 MKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ-Q--KS 308
++G + + A +G GKT ++ L + + + + A + Q Q
Sbjct 57 IEGHDVLAQAQSGTGKTGTFSIAALQ-----RIDTSVKAPQALMLAPTRELALQIQKVVM 111
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
+ + + + G + + + + + I++ TP + +N+++ +
Sbjct 112 ALAFHMDIKVHACIGGTSFVED----AEGLRDAQIVVGTPGRVFDNIQRRRF-RTDKIKM 166
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEALD 425
I DE + ++ + +++ LP QV+ L+A++ + T + +
Sbjct 167 FILDEA---------DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR 217
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 485
++ D + +K +E+ YK + +S IS I R E L
Sbjct 218 NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEEL 276
Query 486 AKRICKDLENLSQI------QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
++ D +S I Q R+ +++ + + + ++ +
Sbjct 277 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 336
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
L + + R A++ F +N E+E+ + + EE ++ +
Sbjct 337 LPANKENYIHRIGRGGRFGRKGVAIN----FVTNEDVGAMRELEKFYSTQIEELPSDIAT 392
Query 600 VS 601
+
Sbjct 393 LL 394
>sp|A6ZQJ1|IF4A_YEAS7 ATP-dependent RNA helicase eIF4A OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=TIF1 PE=3
SV=1
Length=395
Score = 85.6 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + L ++ E L+ ++ + E K E L + Y T ++
Sbjct 210 EVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECL----TDLYDSISVTQAVI 265
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + + + + + + I+ F+ SG
Sbjct 266 FCNTRRKVEELTTKLRNDKFTV------------SAIYSDLPQQERDTIMKEFR-SGSSR 312
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 313 ILISTDLLARGIDVQQVSLVINYDLPANKENYIH 346
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/422 (14%), Positives = 145/422 (34%), Gaps = 48/422 (11%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
+ E+ + + + + + +NL Y +P Q +P
Sbjct 6 TDIEESQIQTNYDKVVYKFDDMELDENLLR---------GVFGYGFEEPSAIQQRAIMPI 56
Query 255 MKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ-Q--KS 308
++G + + A +G GKT ++ L + + + + A + Q Q
Sbjct 57 IEGHDVLAQAQSGTGKTGTFSIAALQ-----RIDTSVKAPQALMLAPTRELALQIQKVVM 111
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
+ + + + G + + + + + I++ TP + +N+++ +
Sbjct 112 ALAFHMDIKVHACIGGTSFVED----AEGLRDAQIVVGTPGRVFDNIQRRRF-RTDKIKM 166
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEALD 425
I DE + ++ + +++ LP QV+ L+A++ + T + +
Sbjct 167 FILDEA---------DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMR 217
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 485
++ D + +K +E+ YK + +S IS I R E L
Sbjct 218 NPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDS-ISVTQAVIFCNTRRKVEEL 276
Query 486 AKRICKDLENLSQI------QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
++ D +S I Q R+ +++ + + + ++ +
Sbjct 277 TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYD 336
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
L + + R A++ F +N E+E+ + + EE ++ +
Sbjct 337 LPANKENYIHRIGRGGRFGRKGVAIN----FVTNEDVGAMRELEKFYSTQIEELPSDIAT 392
Query 600 VS 601
+
Sbjct 393 LL 394
>sp|A1D405|RRP3_NEOFI ATP-dependent rRNA helicase rrp3 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rrp3
PE=3 SV=1
Length=472
Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 39/245 (16%)
Query 586 LTQRFEEKLQELESVSRD----PSNENPKLEDLCFILQEEYHLNPETITIL-------FV 634
+ K++ L+ S S + K + + +LQ L + I FV
Sbjct 232 FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFV 291
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
+ ++SFL + G G + ++ A+ L F++ +IL
Sbjct 292 GQ--SAIIFTRTVHETQRISFLLRSL--GFGAIPLHGQLSQSARLGALGKFRSRSR-DIL 346
Query 695 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNAGVI--- 748
+AT VA G+DI ++V+ ++ + + G R G +T I
Sbjct 347 VATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLR 406
Query 749 --------------EKEQINMYKEKM---MNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
EK+++ + E++ +I+ ++ +DE + +
Sbjct 407 IEGALGKKLKEYELEKDEVMVLAERVGEAQRQAIVEMKNFDEKRGTKAKKFGKGKRSRDE 466
Query 792 DSQEK 796
QE+
Sbjct 467 MDQEE 471
Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/180 (22%), Positives = 62/180 (34%), Gaps = 11/180 (6%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
ET+D ET +++ L E + T + Q E A
Sbjct 36 AETQDEAAATETRPAPKSFKDLGIIDQLCEACETMGYKAPTPI---------QAESIPLA 86
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ I A TG GKT L L + PQ G + A + Q F
Sbjct 87 LQGRDLIGLAETGSGKTAAFALPILQALMEKPQSFFGLI--LAPTRELAFQISKSFESLG 144
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R I G + + II+ TP L+++L+ SL ++ DE
Sbjct 145 STINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEA 204
>sp|A5DAC8|DBP3_PICGU ATP-dependent RNA helicase DBP3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP3 PE=3
SV=2
Length=534
Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 19/179 (11%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
++ + R E + + + + + K L +L+ + ++F +
Sbjct 328 VKVSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLR---QYGSDQKILVFALYKKEAT 384
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ + +G + ++ + LD+FK GD N+L+AT VA
Sbjct 385 RVEAMLRR------------SGFNVAAIHGDLSQQQRTSALDSFKR-GDSNLLLATDVAA 431
Query 702 EGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
G+DI +VI + + I GR G L T + + +N+ +
Sbjct 432 RGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLSGALMNVLR 490
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/359 (14%), Positives = 112/359 (31%), Gaps = 15/359 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + + A TG GKTF + +++ + +V+ + + Q +
Sbjct 164 LNGDDVVGVAETGSGKTFAFGVPAINNIITD-NKKGLRVLCISPTRELALQIYDNLTMLT 222
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G I G ++ ++ + + +++ TP LV+ L G + LS ++ DE
Sbjct 223 KNCGLTCVAIYGGVPKDQQIKAV-KTASVVVATPGRLVDLLNDGAVD-LSTIDYLVLDEA 280
Query 375 HNTSKQH---PYNMIM--FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICK 429
++ I+ N Q L ++ +V L A+ K + D +
Sbjct 281 DRMLEKGFEEDIKNIIGCTNKQRQTLMFTATWPKEVRELAATFMNKAVKVSIGNRDELAA 340
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+ + L Q++ + + + + K + ++R + I
Sbjct 341 NKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEATRVEAMLRRSGFNVAAI 400
Query 490 CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHL---- 545
DL Q + + K + + + + + I L
Sbjct 401 HGDLS--QQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRI 458
Query 546 -RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD 603
R H + +L NV + +L + ++ S
Sbjct 459 GRTGRAGQTGIAHTLFTEHEKHLSGALMNVLRGAGQPVPDELLKFGGHTKKKSHSAYGA 517
>sp|P0CQ79|DBP3_CRYNB ATP-dependent RNA helicase DBP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP3 PE=3 SV=1
Length=605
Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/185 (24%), Positives = 68/185 (37%), Gaps = 18/185 (10%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
F +N E +R E+ ++ L+ +P + K L L+ ++P
Sbjct 382 STFLNNPLRITVGSDELSANKRIEQIVEVLD----NPRD---KDFRLTHHLKAHLKVHPN 434
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ T TR LV AL + + + G G + MT A+ L+AFK
Sbjct 435 SKT---SPTRILVFALYKKEAQRLEYTIRRAGYAVG----ALHGDMTQEARFKALEAFK- 486
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSN 744
+G N+L+AT VA G+DI LVI + + GR G T
Sbjct 487 TGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGE 546
Query 745 AGVIE 749
Sbjct 547 NHEKS 551
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 13/132 (10%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----------VVFFANQIPVY 303
+ K+ + A TG GKT + + L + P K ++ A +
Sbjct 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPS 362
+Q S + E+ G + I G ++ ++ + + +++ TP ++ G +
Sbjct 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLADSGELD- 326
Query 363 LSIFTLMIFDEC 374
LS + ++ DE
Sbjct 327 LSSVSYLVLDEA 338
>sp|Q8EJQ5|RHLB_SHEON ATP-dependent RNA helicase RhlB OS=Shewanella
oneidensis (strain MR-1) OX=211586 GN=rhlB PE=3 SV=1
Length=439
Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 98/252 (39%), Gaps = 20/252 (8%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQD-LTQRFEEKLQELESVSRDPSNE--NPKLEDLC 615
RM +A L FS + E+ D + + ++ E S++ E P ED
Sbjct 185 RMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKM 244
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+F T+ + L +W+EG+ + G+LTG +
Sbjct 245 RLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGH----RVGLLTG--------DVPQ 292
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ IL+ F G +IL+AT VA G+ I+ + V Y+ + + GR G
Sbjct 293 KKRIRILEQF-TQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAG 351
Query 736 SKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
+K S + E+ +N+ E +N SI +A+ + ++ H K ++
Sbjct 352 NKGV---SVSFACEEYALNLPAIETYINHSIPVSNYDRDALLDDIPSPVKIHRKHPAGAR 408
Query 795 EKPKPVPDKENK 806
+
Sbjct 409 NLRERSGAGRTP 420
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (42%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKF-----PQGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL Q + + + A + Q
Sbjct 44 LQSKDIAGQAQTGTGKTMAFLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ +V + G + +V + + + DI+I T +++ +++G I L+ +
Sbjct 104 AILLAKHTRLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIIN-LNAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q8Y8N0|CSHA_LISMO ATP-dependent RNA helicase CshA OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
OX=169963 GN=cshA PE=2 SV=1
Length=520
Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats.
Identities = 52/346 (15%), Positives = 118/346 (34%), Gaps = 50/346 (14%)
Query 450 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 509
+++K + V++ I + + Q+ + L+ K + L+ + Q
Sbjct 58 LPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYD--KHVRVLAVYGGSDISRQ-- 113
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
I +++K + I + L+ + ++ + A + ++ D
Sbjct 114 ---IRSLKKNPQIVVGTPGRILDHINR------RTLKLDHVETLVLDEADEMLNMGFIDD 164
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQEL-ESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
+ ++ + + + ++ + E P K +++ +L E++ +
Sbjct 165 IETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQFFVKVHE 224
Query 629 I-----------------TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
I+F +T+ VD L ++ + G +
Sbjct 225 KEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALD------------MRGYVAEGIHG 272
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TR 728
+T + +L FK G ++L+AT VA G+DI+ V Y+ + +
Sbjct 273 DLTQAKRMSVLRKFK-EGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRT 331
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
GR G + + K++M L+ TWDEA
Sbjct 332 GRAGKEGMAITFVQPREMGYLRIVEETTKKRM---QPLQAPTWDEA 374
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 51/120 (43%), Gaps = 3/120 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GK+ I A TG GKT L H + + + + + A + Q K
Sbjct 37 LEGKDLIGQAQTGTGKTAAFGLPMIHKIDQ--KSNNVQALIIAPTRELAIQVSEELYKLS 94
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
RV + G + + + + +N I++ TP +++++ + T+ L ++ DE
Sbjct 95 YDKHVRVLAVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTL-KLDHVETLVLDEA 153
>sp|Q4PEX7|DBP8_USTMA ATP-dependent RNA helicase DBP8 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP8 PE=3 SV=2
Length=531
Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/198 (19%), Positives = 67/198 (34%), Gaps = 25/198 (13%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
TI+F L + G + ++ + + L F+A
Sbjct 343 TIIFTARCKTAATLSGMLAE------------LGIPNVSLHSHLRQSERSENLQTFRAQ- 389
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+LIAT V G+DI LVI ++ + GR AR K S +
Sbjct 390 RVPVLIATDVGSRGLDIPDVELVINWDLPSAWQDYVHRVGR-TARNGKRGFAISFITERD 448
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF-----------IRDSQEKPK 798
+ I+ ++K+ DE EK+ + T ++ R + + K
Sbjct 449 IDVIHSIEDKINTKLTQLEGLEDEDKILEKLNAVATAKRVATMALHDSQFGERQQRNQHK 508
Query 799 PVPDKENKKLLCRKCKAL 816
+ + +K +K K+
Sbjct 509 QLARLKAEKRASKKAKSA 526
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/221 (20%), Positives = 79/221 (36%), Gaps = 29/221 (13%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ + A TG GKT L + L K G G V + Q F
Sbjct 73 LEGRDLVGGAQTGSGKTLCFALPILNKLIKDMVG--GFAVVLTPTRELGVQLHEQFVAVG 130
Query 315 E--RHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
E R G R + G ++ +I+ TP LV++L+ G L +
Sbjct 131 EGARMGLRCALVLGGMDMMKQASELANLRPHVIVATPGRLVDHLRSGGGEEWGLRRCKFL 190
Query 370 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-----QVIGLTAS-----VGVGDAKN 419
+ DE + ++ + +L LP Q + TA+ V +AK
Sbjct 191 VLDEA---------DRLLTDTFKPELEYLYSVLPSAKTLQTLLFTATLTEQVVEFANAKR 241
Query 420 TDEA-LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF 459
+ +CK+ +D T++ + V +P +
Sbjct 242 PEGKPAPMVCKIE--MDTKTPETLEQRYVFVPSHVREPYLY 280
>sp|Q2UNB7|RRP3_ASPOR ATP-dependent rRNA helicase rrp3 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rrp3
PE=3 SV=1
Length=472
Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/197 (20%), Positives = 73/197 (37%), Gaps = 19/197 (10%)
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDL-TQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
R + + S V + ++ L K Q + ++ + K +DL +
Sbjct 225 RERRTYLFSATMSSKVESLQRASLQNPLRVAVSSSKFQTVSTLQQSYIFIPHKHKDLYLV 284
Query 618 -LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E+ I+F +T L ++ L G G + ++
Sbjct 285 YLLNEFV---GQSCIIFCRTVHETQRLSFFLR------------LLGFGAIPLHGQLSQS 329
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
A+ L F++ +IL+AT VA G+DI ++V+ ++ G+ I GR RA
Sbjct 330 ARLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGK 388
Query 736 SKCFLLTSNAGVIEKEQ 752
S + + +E
Sbjct 389 SGVAISFATQYDVEAWL 405
Score = 73.7 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 61/186 (33%), Gaps = 11/186 (6%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
E + ++ E ++E + L E + T + Q
Sbjct 30 EDAAPNTTEQEQEPSEAPKQAPKSFKELGLIEQLCEACDSMGYKAPTAI---------QA 80
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
E A++G++ I A TG GKT L L P G V A + Q
Sbjct 81 EAIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKPSSFFGLV--LAPTRELAYQISQ 138
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
F R T + G + + II+ TP L+++L+ SL
Sbjct 139 AFEGLGSTISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKY 198
Query 369 MIFDEC 374
++ DE
Sbjct 199 LVMDEA 204
>sp|P0CQ78|DBP3_CRYNJ ATP-dependent RNA helicase DBP3 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP3 PE=3 SV=1
Length=605
Score = 86.8 bits (213), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/185 (24%), Positives = 68/185 (37%), Gaps = 18/185 (10%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
F +N E +R E+ ++ L+ +P + K L L+ ++P
Sbjct 382 STFLNNPLRITVGSDELSANKRIEQIVEVLD----NPRD---KDFRLTHHLKAHLKVHPN 434
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ T TR LV AL + + + G G + MT A+ L+AFK
Sbjct 435 SKT---SPTRILVFALYKKEAQRLEYTIRRAGYAVG----ALHGDMTQEARFKALEAFK- 486
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSN 744
+G N+L+AT VA G+DI LVI + + GR G T
Sbjct 487 TGQQNVLVATDVAARGLDIPDVGLVINVTFPLTTEDFVHRCGRTGRAGKTGKAVTFFTGE 546
Query 745 AGVIE 749
Sbjct 547 NHEKS 551
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 13/132 (10%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----------VVFFANQIPVY 303
+ K+ + A TG GKT + + L + P K ++ A +
Sbjct 208 LSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELA 267
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPS 362
+Q S + E+ G + I G ++ ++ + + +++ TP ++ G +
Sbjct 268 QQSHEHLSAFGEQVGLKSVCIFGGVGKDGQARELSQKDTRVVVGTPGRTLDLADSGELD- 326
Query 363 LSIFTLMIFDEC 374
LS + ++ DE
Sbjct 327 LSSVSYLVLDEA 338
>sp|Q7Y183|RH10_ORYSJ DEAD-box ATP-dependent RNA helicase 10 OS=Oryza
sativa subsp. japonica OX=39947 GN=RH10 PE=2 SV=1
Length=472
Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/177 (21%), Positives = 66/177 (37%), Gaps = 33/177 (19%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L + P ++ ++FV+T L + K ++G+ M+
Sbjct 272 FLVHVLNELPGSMIMIFVRTCESTRLLALTLRNL----RFKAISISGQ--------MSQD 319
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
+ L+ FK D NILI T VA G+DI ++VI Y+ N + GR RA
Sbjct 320 KRLGALNRFKTK-DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGN 378
Query 736 SKCFLLTSN-------------------AGVIEKEQINMYKEKMMNDSILRLQTWDE 773
+ + N ++ +I + +E++ + + L T E
Sbjct 379 TGYAVSLVNQYEAMWFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKE 435
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 52/146 (36%), Gaps = 0/146 (0%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
P V+ + +P Q E A++G++ I TG GKT L L K +
Sbjct 50 PELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKP 109
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
Q + + Q F G T + G + + I++ TP
Sbjct 110 QALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTP 169
Query 349 QILVNNLKKGTIPSLSIFTLMIFDEC 374
L+++L SL+ ++ DE
Sbjct 170 GRLLDHLTDTKGFSLNKLKYLVLDEA 195
>sp|A2XKG2|RH10_ORYSI DEAD-box ATP-dependent RNA helicase 10 OS=Oryza
sativa subsp. indica OX=39946 GN=RH10 PE=1 SV=1
Length=472
Score = 86.0 bits (211), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/177 (21%), Positives = 66/177 (37%), Gaps = 33/177 (19%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L + P ++ ++FV+T L + K ++G+ M+
Sbjct 272 FLVHVLNELPGSMIMIFVRTCESTRLLALTLRNL----RFKAISISGQ--------MSQD 319
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
+ L+ FK D NILI T VA G+DI ++VI Y+ N + GR RA
Sbjct 320 KRLGALNRFKTK-DCNILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGN 378
Query 736 SKCFLLTSN-------------------AGVIEKEQINMYKEKMMNDSILRLQTWDE 773
+ + N ++ +I + +E++ + + L T E
Sbjct 379 TGYAVSLVNQYEAMWFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKE 435
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 52/146 (36%), Gaps = 0/146 (0%)
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
P V+ + +P Q E A++G++ I TG GKT L L K +
Sbjct 50 PELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKP 109
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
Q + + Q F G T + G + + I++ TP
Sbjct 110 QALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAKRPHIVVGTP 169
Query 349 QILVNNLKKGTIPSLSIFTLMIFDEC 374
L+++L SL+ ++ DE
Sbjct 170 GRLLDHLTDTKGFSLNKLKYLVLDEA 195
>sp|A5UI36|RHLB_HAEIG ATP-dependent RNA helicase RhlB OS=Haemophilus
influenzae (strain PittGG) OX=374931 GN=rhlB PE=3 SV=1
Length=415
Score = 85.6 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/223 (18%), Positives = 82/223 (37%), Gaps = 21/223 (9%)
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
Q+ DE R+ + +R + L + ++
Sbjct 157 EIQVVVLDEADRMF--DLGFIRDIRYLLRKCPAPQARLTMLFSATLSYKVRELAFEDMND 214
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E + ++ ++ PSN++ K+ L ++++E+ I+F T+ +
Sbjct 215 PEYIEIEPEQKTGHRIKEELFYPSNQD-KMALLLTLMEDEWPE----RCIVFANTKHRCE 269
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
+ ++ + + G+LTG + + +L F GD +IL+AT VA
Sbjct 270 EIWGYLAADGH----RVGLLTG--------DVAQKKRLSLLKQF-TDGDLDILVATDVAA 316
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
G+ I+ V Y+ + + GR GRA S + +
Sbjct 317 RGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFA 359
Score = 59.8 bits (143), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ----KGKVVFFANQIPVYEQQKSV 309
++ G++ A TG GKT L HHL + + A + Q +
Sbjct 43 SLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILAPTRELAVQISND 102
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G + ++ I DI+I T +++ +K+G I L ++
Sbjct 103 AEFLAKASGLKTALAYGGDGYDKQLQVIECGVDILIGTTGRVIDYVKQGVIG-LDEIQVV 161
Query 370 IFDEC 374
+ DE
Sbjct 162 VLDEA 166
>sp|B2VG58|RHLB_ERWT9 ATP-dependent RNA helicase RhlB OS=Erwinia
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 /
NCPPB 4357 / Et1/99) OX=465817 GN=rhlB PE=3 SV=1
Length=430
Score = 85.6 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/177 (23%), Positives = 67/177 (38%), Gaps = 21/177 (12%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + E + ++ ++ PSNE K+ L +++EE+ T
Sbjct 205 VRELAFENMNNAEYVEVEPDQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD----RT 259
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F T+ + + G+ + G+LTG + + ILD F GD
Sbjct 260 IIFANTKHRCEDV----WGHLAADGHRVGLLTG--------DVAQKKRLRILDDF-TKGD 306
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 307 VDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGANGHSISLACEE 363
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 44/114 (39%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L HHL P Q + + + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLAQITGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + D++I T L++ K+ + L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLENGVDVLIGTTGRLIDYAKQNHVN-LGAIQVVVLDEA 167
>sp|Q8K301|DDX52_MOUSE Probable ATP-dependent RNA helicase DDX52
OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
Length=598
Score = 86.8 bits (213), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/359 (16%), Positives = 127/359 (35%), Gaps = 46/359 (13%)
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ-LMRD 481
+ + +L AS T+ ++ L Q+ K FR + + + I + L++
Sbjct 199 VMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKI 258
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+E RI + + + I ++FG + +++ + V + + +D
Sbjct 259 SEGTGFRI--HMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG----IDLTN 312
Query 542 TSHLRKYNDALIISEHA---RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK----- 593
L + + R + A +L VR A F +++ +
Sbjct 313 VEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNV 372
Query 594 -----------LQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDA 642
++ +E +E KL + ++++ + ++FV++
Sbjct 373 VSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFKPP----VLVFVQSIERAKE 428
Query 643 LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
L + + I G + T + + +F+A G +LI T++
Sbjct 429 LFHEL------------IYEGINVDVIHAERTQQQRDNTVHSFRA-GKIWVLICTALLAR 475
Query 703 GIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GID NLVI Y++ + I I GR RG T + + + N+ ++
Sbjct 476 GIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQ 534
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/158 (23%), Positives = 65/158 (41%), Gaps = 6/158 (4%)
Query 220 QNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
Q L + S + L + F+ P Q++ + G+ + APTG GKT +
Sbjct 165 QQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPI 224
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGAT-AENVPVEQI 337
LK+ P + + + + + Q K E G+R+ I A A +
Sbjct 225 LMQLKQ-PTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKS 283
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTL--MIFDE 373
+ DI++ TP L+ LK+ P + + + ++ DE
Sbjct 284 SKKFDILVTTPNRLIYLLKQ-DPPGIDLTNVEWLVVDE 320
>sp|Q6BQ61|RRP3_DEBHA ATP-dependent rRNA helicase RRP3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=RRP3 PE=3 SV=2
Length=477
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 51/143 (36%), Gaps = 28/143 (20%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKT----RALVDALKNWIEGNPKLSFLKPGILTGRG 665
K L +L E + I+F +T + L + G
Sbjct 291 KNTYLIHLLNEFLGKS----IIIFTRTCAHSQRTA-LLARIL---------------GFS 330
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ +T + L+ FKA G NILIAT VA G+DI ++VI Y+ + I
Sbjct 331 AVPLHGQLTQAQRLGSLNKFKA-GKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYI 389
Query 726 QTRG---RGRARGSKCFLLTSNA 745
G R G L+T
Sbjct 390 HRVGRTARAGKSGKSISLITQYD 412
Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/202 (21%), Positives = 74/202 (37%), Gaps = 22/202 (11%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQ-----NLSENSCPPSEV-----SDTNLYSPF- 241
K ++ L +K++ + ++ QE+P + N P +E+ ++ L
Sbjct 18 KKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFKSFNELKLIPELL 77
Query 242 ---------KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK 292
KP Q E A++GK+ I A TG GKT + L + G
Sbjct 78 EAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGL 137
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
V A + Q K F G R I G ++ I++ TP ++
Sbjct 138 V--LAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMMDQARDLMRKPHILVATPGRIM 195
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
++L+ SL ++ DE
Sbjct 196 DHLEHTKGFSLKNLKYLVMDEA 217
>sp|Q6BZ77|DBP3_DEBHA ATP-dependent RNA helicase DBP3 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP3 PE=3 SV=1
Length=527
Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 76/202 (38%), Gaps = 26/202 (13%)
Query 561 KDALDYLKDFFSN-VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
K+ + F ++ V+ + D E +R + ++ +E K + L +L+
Sbjct 303 KEVRELASTFMNSPVKVSIGDRNELSANKRITQIVEVIEPY--------DKEKKLLSLLR 354
Query 620 EEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ N + ++F + ++N + ++ + + ++ +
Sbjct 355 KYQSGSNKDDKVLIFALYKKEATRIENLL--------VRNSFKV----SAVHGDLSQQQR 402
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARG 735
L AFKA G +L+AT VA G+DI +VI + + I GR G
Sbjct 403 TSALGAFKA-GKTTLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTG 461
Query 736 SKCFLLTSNAGVIEKEQINMYK 757
L T + + +N+ +
Sbjct 462 IAHTLFTEHEKHLSGALMNVLR 483
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 50/120 (42%), Gaps = 3/120 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ I A TG GKTF + +++ + + KV+ + + Q
Sbjct 152 LSGKDVIGVAETGSGKTFAFGVPAINNILTHDK-KGLKVLCISPTRELALQIYDNLVDLT 210
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G +++ V + N +++ TP L++ L G + SL ++ DE
Sbjct 211 ANTPLKCVAVYGGVSKHEQVSS-LRNASVVVATPGRLIDLLNDGAL-SLDSIEYLVLDEA 268
>sp|A6RW56|RRP3_BOTFB ATP-dependent rRNA helicase rrp3 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=rrp3 PE=3 SV=1
Length=486
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/192 (18%), Positives = 69/192 (36%), Gaps = 23/192 (12%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + I+F +T + + G G
Sbjct 287 KDTYLIYLLNEFAGQS----AIIFTRTVNETQRIAILLRT------------LGFGAIPL 330
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQ 726
+ ++ ++ L+ F+A G IL+AT VA G+DI ++V+ Y+ I +
Sbjct 331 HGQLSQSSRLGALNKFRA-GSREILVATDVAARGLDIPSVDVVLNYDVPQDSKTYIHRVG 389
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
R G ++T I +K + ++ + VF+ ++ Q H
Sbjct 390 RTARAGKSGHAISVVTQYDLEIFMRIEAALGKKQVEYPTVKDEVM---VFKPRVEEAQRH 446
Query 787 EKFIRDSQEKPK 798
+ + + +
Sbjct 447 ARNEMKNLHEDR 458
Score = 72.5 bits (176), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 47/128 (37%), Gaps = 2/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A++G++ I A TG GKT L L PQ G V A + Q
Sbjct 87 QRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLV--LAPTRELAYQI 144
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F + I G + + II+ TP L+++L+ SL
Sbjct 145 SQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLENTKGFSLRSL 204
Query 367 TLMIFDEC 374
++ DE
Sbjct 205 KYLVMDEA 212
>sp|B1LLV3|RHLB_ECOSM ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rhlB PE=3
SV=1
Length=421
Score = 85.6 bits (210), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/311 (19%), Positives = 100/311 (32%), Gaps = 33/311 (11%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L + + + I + + Q+ D E LA+ L + +
Sbjct 71 LLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 130
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE----HARMKDAL 564
E + + K +C + + D I + RM A
Sbjct 131 LESGVDILIGTTGRLIDYAKQNHINLCAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAN 190
Query 565 DYLKDFFS--------NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
L FS + + E + ++ ++ PSNE K+ L
Sbjct 191 QRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQT 249
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+++EE+ I+F T+ + + G+ + G+LTG +
Sbjct 250 LIEEEWPD----RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQK 293
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+ ILD F GD +IL+AT VA G+ I V Y+ + + I GR A
Sbjct 294 KRLRILDEF-TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGA 352
Query 734 RGSKCFLLTSN 744
G L
Sbjct 353 SGHSISLACEE 363
Score = 56.7 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LCAIQVVVLDEA 167
>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp8 PE=3 SV=1
Length=522
Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/154 (21%), Positives = 52/154 (34%), Gaps = 16/154 (10%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L N I+F D L+ + T+ ++
Sbjct 333 EAFLHVLLST-EANASKPAIIFCNHTKTADLLERMLRRLS------------HRVTSLHS 379
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS +L+AT VA G+DI LV+ ++ N + GR
Sbjct 380 LLPQSERNANLARFRAS-AARLLVATDVASRGLDIPSVELVVNFDVPRNPDDYVHRVGRT 438
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
RA R + L V I + M +
Sbjct 439 ARAGRKGESVTLVGQRDVSLVLAIEERVGRQMEE 472
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ G++ I + TG GKT + + P G G V + Q
Sbjct 125 EILNGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGLV--LTPTRELALQIYEQIKA 182
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ I+G T + + ++I TP L +++ TI L ++
Sbjct 183 ISAPQSMKPLLITGGTDMRPQAVALAQRPHVVIATPGRLADHINTSGSDTIRGLKRVRMV 242
Query 370 IFDEC 374
+ DE
Sbjct 243 VLDEA 247
>sp|A5DBI5|DBP5_PICGU ATP-dependent RNA helicase DBP5 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP5 PE=3
SV=1
Length=482
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 71/183 (39%), Gaps = 26/183 (14%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ E + ++ + D +E K E +L E Y L +I+FVKT+A + L
Sbjct 294 LKQEELNVDAIKQLYMDCDSEKHKAE----VLSELYGLLTIGSSIIFVKTKATANYLYAK 349
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ G + ++ + + ++D F+ G +LI T+V GIDI
Sbjct 350 MKSE------------GHACSILHSDLDNSERDKLIDDFR-EGRSKVLITTNVLARGIDI 396
Query 707 AQCNLVILYEY---------VGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
A ++V+ Y+ + I GR G + + EQI Y
Sbjct 397 ASVSMVVNYDIPVDKDDKPDPSTYLHRIGRTGRFGRVGVAVSFVHDKKSYEDLEQIRSYF 456
Query 758 EKM 760
+
Sbjct 457 NDI 459
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 37/117 (32%), Gaps = 7/117 (6%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
KN I + +G GKT L + + + + + Q V +
Sbjct 132 KNMIGQSQSGTGKTAAFSLTMLS--RVDVNDPNTQCICLSPTRELARQTLEVITTM---- 185
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + I++ TP L++ +K+ + + + DE
Sbjct 186 GKFTKVTTQLVVPQAMEKNQGTQAHIVVGTPGTLLDMIKR-KLLRTGKVKVFVLDEA 241
>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase
43 OS=Arabidopsis thaliana OX=3702 GN=RH43 PE=3 SV=1
Length=542
Score = 86.4 bits (212), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/315 (17%), Positives = 104/315 (33%), Gaps = 36/315 (11%)
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
+ + Q E + +D + G Q V + +V P +
Sbjct 181 PSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
++ K + L L ++A + + D F S + F Q
Sbjct 241 KDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQI 300
Query 590 FEEKLQELESVSRDPS----------------NENPKLEDLCFILQEEYHLNPETITILF 633
F ++ V+ + + K+ L LQ+ ++F
Sbjct 301 FATSA-LVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK-----TTPPVLIF 354
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
+ +A VD + ++ +L G + G + + FKA G ++
Sbjct 355 CENKADVDDIHEYL------------LLKGVEAVAIHGGKDQEDRDYAISLFKA-GKKDV 401
Query 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI 753
L+AT VA +G+D VI Y+ G + + GR R K + T+ + E
Sbjct 402 LVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGR-TGRCGKTGIATTFINKNQSEIT 460
Query 754 NMYKEKMMNDSILRL 768
+ + ++ ++ R+
Sbjct 461 LLDLKHLLQEAKQRI 475
Score = 59.8 bits (143), Expect = 8e-08, Method: Composition-based stats.
Identities = 69/384 (18%), Positives = 132/384 (34%), Gaps = 36/384 (9%)
Query 137 EEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNK-FSELWIVEKGIKDV 195
EE L K + + ++E L SDK+ +LA + S W ++ +
Sbjct 14 EERLAQMKRKVVEEPGKGMMEHL--SDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKM 71
Query 196 ETEDLEDKMETSDIQIFYQEDPEC-QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
T+ ++ + I + ++ P +N + P + P Q++
Sbjct 72 STKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVV 131
Query 255 MKGKNTIICAPTGCGKTFVSLLIC----EHHLKKFP--QGQKGKVVFFANQIPVYEQQKS 308
+ G++ I A TG GKT V +L P G+ + + +Q
Sbjct 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191
Query 309 VFSKYFERHGYR-------VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
V ++ + I G + + + + I++ TP L + L K +
Sbjct 192 VVEQFVASLVEDGYPRLRSLLCIGGVDMRSQL-DVVKKGVHIVVATPGRLKDILAKKKM- 249
Query 362 SLSIFTLMIFDECHNTSK-------QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA---S 411
SL L+ DE +H ++ + Q+ +A
Sbjct 250 SLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKP 309
Query 412 VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 471
V V + LD I ++ + I L E Q P F + ++ + D
Sbjct 310 VTVNVGRAGAANLDVIQEVEYVKQEAKIV----YLLECLQKTTPPVLIFCENKADVDDIH 365
Query 472 KYIIAQLMRDTESLAKRICKDLEN 495
+Y+ L++ E++A KD E+
Sbjct 366 EYL---LLKGVEAVAIHGGKDQED 386
>sp|Q887N8|RHLB_PSESM ATP-dependent RNA helicase RhlB OS=Pseudomonas
syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283
GN=rhlB PE=3 SV=1
Length=397
Score = 85.2 bits (209), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/330 (15%), Positives = 112/330 (34%), Gaps = 32/330 (10%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
E+L Q +++ + + I + ++ Q+ +D L K +L ++ + +F
Sbjct 68 EQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYT--NLNVMTFVGGMDFDK 125
Query 507 Q------KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
Q ++ +V + F + + + + + + R
Sbjct 126 QLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQ 185
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRF--EEKLQELESVSRDPSNENPKLEDL---- 614
+ + A F E +L +++ + + E+ES++ N + +
Sbjct 186 TPHKGERQTLLFS---ATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAGAD 242
Query 615 -CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L N ++F + V ++ + + G + +
Sbjct 243 KYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRD------------GVNAAQLSGDV 290
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
+ L+ F+ G +L+AT VA GI I + VI + + GR
Sbjct 291 PQHKRIKTLEGFR-EGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGR 349
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
G+ + S AG + Q+ +EK+
Sbjct 350 AGAD-GVSISFAGEDDSYQLPAIEEKLGRK 378
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/168 (20%), Positives = 66/168 (39%), Gaps = 8/168 (5%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
++ + + N P + +L P+ Q + +KGK+ I A TG GKT
Sbjct 2 EPQEGKTRFHDFNLAPELMHAIQDLGFPYCT-PIQAGVLGFTLKGKDAIGRAQTGTGKTA 60
Query 273 VSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
L+ L + P + + + A + Q + + V G
Sbjct 61 AFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGG 120
Query 328 TAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++Q+ + DI++ TP L++ ++G + L + +M+ DE
Sbjct 121 MDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVH-LDMVEVMVLDEA 167
>sp|Q49Z29|CSHA_STAS1 DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus saprophyticus subsp. saprophyticus (strain
ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451
GN=cshA PE=3 SV=1
Length=506
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/343 (17%), Positives = 128/343 (37%), Gaps = 41/343 (12%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L+ ++ QN + FG ++ I ++K
Sbjct 74 ILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKKGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL--KDFFSNVRAAGFDEIEQDLT 587
R K ++T L + ++ + + MK +D + + + + +A + Q L
Sbjct 134 LNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATMPKAIQTLV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI---------TILFVKTRA 638
Q+F + ++ + + +P++E+ I++E + T I+F +T+
Sbjct 194 QQFMKSPVIVK--TMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + I G + +T + +L FK +IL+AT
Sbjct 252 RVDELTSAL------------ISKGYKAEGLHGDITQAKRLEVLKKFKND-QLDILVATD 298
Query 699 VADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM 755
VA G+DI+ + V ++ + I GR +G + IE + I
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFV----NPIEMDYIRQ 354
Query 756 YKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
++ + V + + I+ + +P+
Sbjct 355 IEQANKRQMTALRPPHRKEVLKARENDIKGKVQNWMSRDNEPR 397
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 60/155 (39%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E + Q E A++GK+ + A TG GKT +
Sbjct 2 QNFKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K + + + A + Q + + +V + G + ++ + +
Sbjct 61 --IEKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPIDRQIKALKK 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ + I TL I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTLKTNDIHTL-ILDEA 152
>sp|Q6CXT4|IF4A_KLULA ATP-dependent RNA helicase eIF4A OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIF1 PE=3 SV=1
Length=396
Score = 85.2 bits (209), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + + + L ++ E L+ + + E K L + Y T ++
Sbjct 211 EVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKY----DCLTDLYDSISVTQAVI 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + N + + + + I+ F+ SG
Sbjct 267 FCNTRRKVEELTERLREN--------NFTV----SAIYSDLQQQERDTIMKEFR-SGSSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 314 ILISTDLLARGIDVQQVSLVINYDLPSNKENYIH 347
Score = 56.3 bits (134), Expect = 7e-07, Method: Composition-based stats.
Identities = 52/271 (19%), Positives = 99/271 (37%), Gaps = 28/271 (10%)
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVV 294
Y +P Q LP ++GK+ + A +G GKT ++ L K PQG +
Sbjct 40 YGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQG-----L 94
Query 295 FFANQIPVYEQ-Q--KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
A + Q Q + + + + G T+ E + II+ TP +
Sbjct 95 ILAPTRELALQIQKVVMALAIHMDVKVHACI---GGTSLQEDSEALRGGAQIIVGTPGRV 151
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGL 408
+ + + I + I DE + ++ +++ LP QV+ L
Sbjct 152 FDMIDR-RIFKTDNIKMFILDEA---------DEMLSTGFKEQIYNIFTMLPPTSQVVLL 201
Query 409 TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
+A++ + T + + ++ D + + +E+ YK +S IS
Sbjct 202 SATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDS-IS 260
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
I R E L +R+ ++ +S I
Sbjct 261 VTQAVIFCNTRRKVEELTERLRENNFTVSAI 291
>sp|Q09747|DBP5_SCHPO ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp5
PE=1 SV=1
Length=503
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/330 (17%), Positives = 111/330 (34%), Gaps = 45/330 (14%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE-----SLAKRICKDLENLSQIQ 500
L ++ V KPQ ++ + ++ ++ + TE + + K + +QI
Sbjct 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIV 234
Query 501 NREFGT---QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
GT + + V D + + + HL N +++
Sbjct 235 IGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSA 294
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
+ Y + F N E ++ ++ + D +E K +
Sbjct 295 TFSERVEKYAERFAPNANEIRLKTEELS--------VEGIKQLYMDCQSEEHKY----NV 342
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E Y L +I+F K + + + + + LTG +
Sbjct 343 LVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH----TVACLTG--------NLEGAQ 390
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY---------VGNVIKMIQTR 728
+ I+D+F+ G +L+ T+V GID++Q NLV+ Y+ + I
Sbjct 391 RDAIMDSFRV-GTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 449
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR G + E++N +E
Sbjct 450 GRFGRVGVSINFV---HDKKSWEEMNAIQE 476
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/118 (17%), Positives = 45/118 (38%), Gaps = 9/118 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT L + K + + A + Q V ++ +
Sbjct 154 RNMIGQSQSGTGKTAAFALTMLS--RVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT 211
Query 318 GYRVT-GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ GI + + ++ I+I TP +++ +K+ + + + + DE
Sbjct 212 EVKTAFGIKDSVPKGAKIDA-----QIVIGTPGTVMDLMKRRQLDARD-IKVFVLDEA 263
>sp|A1CR32|RRP3_ASPCL ATP-dependent rRNA helicase rrp3 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rrp3 PE=3 SV=1
Length=473
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 40/210 (19%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + I+F +T + + G G
Sbjct 280 KDIYLVYLLNEFVGQS----AIIFTRTVHETQRISFLLRA------------LGFGAIPL 323
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ ++ L F++ +IL+AT VA G+DI ++V+ ++ + + G
Sbjct 324 HGQLSQSSRLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVG 382
Query 730 R-GRARGSKCFLLTS-------------------NAGVIEKEQINMYKEKM---MNDSIL 766
R RA S + + +EK+++ + E++ +I+
Sbjct 383 RTARAGKSGVAISFVTQYDVEIWLRIEGALGKKLDEYDLEKDEVMVLAERVGEAQRQAIM 442
Query 767 RLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
++ +DE + QE+
Sbjct 443 EMKNFDEKKGTRAKKFGKGKRSRDEMDQEE 472
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/181 (22%), Positives = 61/181 (34%), Gaps = 11/181 (6%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALP 253
+ E +D + ET +++ L E + T + Q E
Sbjct 36 NAEAQDGPESSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPI---------QAESIPL 86
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++ ++ I A TG GKT L L PQ G V A + Q F
Sbjct 87 ALQDRDLIGLAETGSGKTAAFALPILQALMDKPQSFFGLV--LAPTRELAFQISQSFEAL 144
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R I G + + II+ TP L+++L+ SL ++ DE
Sbjct 145 GSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDE 204
Query 374 C 374
Sbjct 205 A 205
>sp|P20447|DBP3_YEAST ATP-dependent RNA helicase DBP3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP3
PE=1 SV=2
Length=523
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 17/151 (11%)
Query 610 KLEDLCFILQEEYHLNPET-ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L +L++ + + ++F + ++ ++ N G
Sbjct 341 KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYN------------GYNVAA 388
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMI 725
+ ++ + L+ FK SG N+L+AT VA G+DI VI + + I
Sbjct 389 IHGDLSQQQRTQALNEFK-SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI 447
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
GR G+ L T + +N+
Sbjct 448 GRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 478
Score = 83.3 bits (204), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 81/193 (42%), Gaps = 3/193 (2%)
Query 183 SELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF- 241
SE ++ + + + D+++ + ++I + D + L + S S F
Sbjct 74 SEFYVQSEALTSLPQSDIDEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISKFP 133
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + GK+ + A TG GKTF + HL + + +V+ +
Sbjct 134 KPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRE 193
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q ++ G + + G ++ Q ++ + +++ TP L++ L++G++
Sbjct 194 LASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQ-LKKSQVVVATPGRLLDLLQEGSVD 252
Query 362 SLSIFTLMIFDEC 374
LS ++ DE
Sbjct 253 -LSQVNYLVLDEA 264
>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
OX=237561 GN=PRP5 PE=3 SV=1
Length=884
Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats.
Identities = 38/202 (19%), Positives = 78/202 (39%), Gaps = 28/202 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTN 668
++E L IL +P++ ++F + + D L N +
Sbjct 537 RVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNK-------------YPAIA 583
Query 669 QNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKM 724
+ G +K + F NILIATS+A G+D+ LVI ++ + +
Sbjct 584 IHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHR 643
Query 725 IQTRGRGRARGSKCFLLTSN----------AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ GR A+G+ ++S+ A + I+ E++ N + +++ E
Sbjct 644 VGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANKFVTKVKAGKEK 703
Query 775 VFREKILHIQTHEKFIRDSQEK 796
+ + + +RD++ K
Sbjct 704 ISSGFGGKGLDNLQEVRDNKLK 725
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/139 (22%), Positives = 62/139 (45%), Gaps = 6/139 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK--FPQGQKGKV-VFFAN 298
KP Q + + G++ I A TG GKT +L H++ F + +G + + +
Sbjct 316 KPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSP 375
Query 299 QIPVYEQQKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK- 356
+ Q + + +R + RV G ++ + ++ + +II+ TP +++ L
Sbjct 376 TRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAA 435
Query 357 -KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 436 NSGRVLNLKRCTFVVLDEA 454
>sp|A6QRQ7|RRP3_AJECN ATP-dependent rRNA helicase RRP3 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=RRP3 PE=3
SV=1
Length=485
Score = 86.0 bits (211), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 72/191 (38%), Gaps = 21/191 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++L E + I+F +T L + G G
Sbjct 286 KDIYLVYLLNEYAGQS----AIVFTRTVNETQRLAILLRA------------LGFGSIPL 329
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ ++ L F++ +IL+AT VA G+DI ++V+ ++ + I G
Sbjct 330 HGQLSQSSRLGALSKFRSRSR-DILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVG 388
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA + F + + + +I K +++ +++ + V +++ Q H
Sbjct 389 RTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLDE--YKVEKEEVMVLSDRVGEAQRHA 446
Query 788 KFIRDSQEKPK 798
+ +
Sbjct 447 ITEMKDLHEKR 457
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 35/170 (21%), Positives = 57/170 (34%), Gaps = 2/170 (1%)
Query 205 ETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICA 264
+ + +E+ ++ + S P Q E A++G++ I A
Sbjct 44 QDDESPQVQREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLA 103
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
TG GKT L L PQ G + A + Q F R I
Sbjct 104 ETGSGKTAAFALPILQALMNKPQSLFGLI--LAPTRELACQISEAFEALGSLISVRCAVI 161
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + + II+ TP L+++L+ SL ++ DE
Sbjct 162 VGGMDMVSQAISLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEA 211
>sp|Q88NB7|RHLB_PSEPK ATP-dependent RNA helicase RhlB OS=Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440) OX=160488 GN=rhlB PE=3 SV=1
Length=398
Score = 84.8 bits (208), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/347 (12%), Positives = 109/347 (31%), Gaps = 28/347 (8%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+L+Q +++ + + I + ++ Q+ +D +L K ++ + + +
Sbjct 69 SQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQL 128
Query 507 QKYE----QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD 562
+ E +V + F + + + + + + R
Sbjct 129 KALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTP 188
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK--LQELESVSRDPSNENPKLEDL-----C 615
+ + A F + +L +++ + E+E + + +
Sbjct 189 PKSERQTLLFS---ATFTDDVMNLAKQWTTNPAIVEIEPENVASETVEQHVYAVAGSDKY 245
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L N ++F + V ++ + + G + +
Sbjct 246 KLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRD------------GINAAQLSGDVPQ 293
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+ L++F+ G +L+AT VA GI I + VI + + + GR R
Sbjct 294 HKRIRTLESFR-EGRITVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGR-TGRA 351
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
+ S AG + Q+ + + + + + H
Sbjct 352 GTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH 398
Score = 66.7 bits (161), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIP 301
Q ++ ++G++ I A TG GKT L+ L++ P ++ + + A
Sbjct 36 QAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRE 95
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTI 360
+ Q + + G V G + ++ + + DI++ TP L++ ++G +
Sbjct 96 LVVQIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEV 155
Query 361 PSLSIFTLMIFDEC 374
L + +M+ DE
Sbjct 156 H-LDMVEVMVLDEA 168
>sp|Q99PT0|DDX52_RAT Probable ATP-dependent RNA helicase DDX52
OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Length=598
Score = 86.4 bits (212), Expect = 5e-16, Method: Composition-based stats.
Identities = 65/358 (18%), Positives = 131/358 (37%), Gaps = 44/358 (12%)
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ-LMRD 481
+ + +L AS T+ ++ L Q+ K FR + + + I + L++
Sbjct 199 VMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKI 258
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+E RI + + + I ++FG + +++ + V + + ++ L
Sbjct 259 SEGTGFRI--HMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQEPPG---IDLTSV 313
Query 542 TSHLRKYNDALIISEHARMKD--ALDYLKDFFSNVRAAGFDEI-EQDLTQRFEEKLQELE 598
+ +D L +D A +L VR A F D+ Q + L +
Sbjct 314 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLNLDNIV 373
Query 599 SVSRDP---------------SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
SVS +E KL + ++++ ++ ++FV++ L
Sbjct 374 SVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPP----VLVFVQSIERAKEL 429
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + I G + T + + +F+A G +LI T++ G
Sbjct 430 FHEL------------IYEGINVDVIHAERTQQQRDNTVHSFRA-GKIWVLICTALLARG 476
Query 704 IDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
ID NLVI Y++ + I I GR RG T + + + N+ ++
Sbjct 477 IDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQ 534
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 6/158 (4%)
Query 220 QNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
Q L + + L + F+ P Q++ + G+ + APTG GKT +
Sbjct 165 QQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPI 224
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGAT-AENVPVEQI 337
LK+ P + + + + + Q K E G+R+ I A A +
Sbjct 225 LMQLKQ-PTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKS 283
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTL--MIFDE 373
+ DI++ TP L+ LK+ P + + ++ ++ DE
Sbjct 284 SKKFDILVTTPNRLIYLLKQEP-PGIDLTSVEWLVVDE 320
>sp|Q0U8V9|DBP8_PHANO ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP8 PE=3 SV=1
Length=508
Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/134 (21%), Positives = 48/134 (36%), Gaps = 18/134 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
I+F L+ + + T ++G+ + L F+A
Sbjct 333 SVIIFCNRTKTATLLEYMLR------------MLDHRVTALHSGLKQQDRISNLARFRAQ 380
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG 746
IL+AT VA G+DI + LV+ ++ + I GR RA R
Sbjct 381 -AARILVATDVAARGLDIPEVGLVVNFDVPRDPDDYIHRVGRTARAGRPGNSVTFIGQRD 439
Query 747 VIEKEQINMYKEKM 760
V E + +E++
Sbjct 440 V---ELVLAIEERV 450
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 11/192 (6%)
Query 192 IKDVETEDLEDKMETSD-IQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-----KPRN 245
I V+ + + + + PE + S +V+ + S +P
Sbjct 43 ISRVKPAKDRAGHQAASRVAVSKASVPEENGKEKVSFASIDVAPWLVASLASMEIKRPTG 102
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q +KG++ I + TG GKT + + P G G ++ + Q
Sbjct 103 IQKACIPEILKGRDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLII--TPTRELAIQ 160
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPS 362
+ ++G + + + ++I TP L ++K TI
Sbjct 161 IYEQVKAISAPQSMKPILVTGGSDQREQAIALASRPHVVIATPGRLAEHIKTSGEDTICG 220
Query 363 LSIFTLMIFDEC 374
L ++FDE
Sbjct 221 LRRVRFVVFDEA 232
>sp|A6ZUA1|DBP3_YEAS7 ATP-dependent RNA helicase DBP3 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP3 PE=3 SV=1
Length=523
Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 17/151 (11%)
Query 610 KLEDLCFILQEEYHLNPET-ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L +L++ + + ++F + ++ ++ N G
Sbjct 341 KERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYN------------GYNIAA 388
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMI 725
+ ++ + L+ FK SG N+L+AT VA G+DI VI + + I
Sbjct 389 IHGDLSQQQRTQALNEFK-SGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRI 447
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
GR G+ L T + +N+
Sbjct 448 GRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 478
Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/193 (19%), Positives = 81/193 (42%), Gaps = 3/193 (2%)
Query 183 SELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF- 241
SE ++ + + + D+++ + ++I + + + L + S S F
Sbjct 74 SEFYVQSEALTSLPQSDIDEYFKENEIAVEDPLNLALRPLLSFDYLSLDSSIQAEISKFP 133
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + GK+ + A TG GKTF + HL + + +V+ +
Sbjct 134 KPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRE 193
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q ++ G + + G ++ Q ++ + +++ TP L++ L++G++
Sbjct 194 LASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQ-LKKSQVVVATPGRLLDLLQEGSVD 252
Query 362 SLSIFTLMIFDEC 374
LS ++ DE
Sbjct 253 -LSQVNYLVLDEA 264
>sp|Q7MGP7|RHLB_VIBVY ATP-dependent RNA helicase RhlB OS=Vibrio
vulnificus (strain YJ016) OX=196600 GN=rhlB PE=3 SV=1
Length=435
Score = 85.2 bits (209), Expect = 5e-16, Method: Composition-based stats.
Identities = 53/295 (18%), Positives = 100/295 (34%), Gaps = 48/295 (16%)
Query 478 LMRDTESLAKRICKDLENL----SQIQNREFGTQKYEQWIVTVQKACMVF---------- 523
+M T LA +I D E L +G + Y++ + +Q V
Sbjct 89 IMAPTRELAIQIYNDAEPLIASTGIKAALAYGGESYDKQLAKLQGGVDVLIGTTGRIIDF 148
Query 524 -----------QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 572
Q DE R+ + +R + + L
Sbjct 149 YKQRVFNLNNIQAVVLDEADRMF--DLGFIKDIRFLFRRMPAPQERLNMLFSATLSYRVQ 206
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ E + + ++ ++ PSNE+ K+ L +++EE+ I+
Sbjct 207 ELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNED-KMALLQTLIEEEWPD----RAII 261
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F T+ +++ + + + G+LTG + ++ IL+ F G +
Sbjct 262 FANTKYKCESIWAHLAADGH----RVGLLTG--------DVPQKKREKILEQF-TQGSVD 308
Query 693 ILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSN 744
+L+AT VA G+ I Q V Y+ + + I GR A G +
Sbjct 309 LLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACED 363
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL-----KKFPQGQKGKVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL + Q + + + A + Q +
Sbjct 44 LSGQDIAGQAQTGTGKTLAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ D++I T +++ K+ + +L+ +
Sbjct 104 AEPLIASTGIKAALAYGGESYDKQLAKLQGGVDVLIGTTGRIIDFYKQ-RVFNLNNIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q6BRN4|IF4A_DEBHA ATP-dependent RNA helicase eIF4A OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=TIF1 PE=3 SV=1
Length=397
Score = 84.8 bits (208), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 72/181 (40%), Gaps = 17/181 (9%)
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ YN ++ E ++ + V + + L ++ E L+ ++ +
Sbjct 185 QIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVE 244
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K + LC + Y T ++F TR+ V+ L ++G
Sbjct 245 QEDYKFDCLC----DLYDSISVTQAVIFCNTRSKVEFLTTKLKGE--------NFTV--- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + + + I++ F+ SG ILI+T + GID+ Q +LVI Y+ N I
Sbjct 290 -SAIHADLPQADRDTIMNEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347
Query 726 Q 726
Sbjct 348 H 348
Score = 62.9 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 36/222 (16%), Positives = 81/222 (36%), Gaps = 15/222 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q LP +G++ + A +G GKT + + + + + A + Q
Sbjct 50 QQRAILPITEGRDVLAQAQSGTGKT--ATFTISALQRIDENEKSTQALILAPTRELALQI 107
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++V + V G T+ +E I++ TP + + +++
Sbjct 108 QNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFF-KTDKV 166
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEA 423
+ I DE + ++ + +++ LP QV+ L+A++ + T +
Sbjct 167 KMFILDEA---------DEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKF 217
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
++ ++ D + +K +EQ YK +S
Sbjct 218 MNNPVRILVKKDELTLEGIKQFYINVEQEDYKFDCLCDLYDS 259
>sp|Q9UHL0|DDX25_HUMAN ATP-dependent RNA helicase DDX25 OS=Homo
sapiens OX=9606 GN=DDX25 PE=1 SV=2
Length=483
Score = 85.6 bits (210), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/275 (15%), Positives = 90/275 (33%), Gaps = 34/275 (12%)
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA-----RMKDALDYLKD 569
TV C ++ D + + ++D I + A +M +D
Sbjct 225 TVLDWCFKLKLIDLTKIRVFVLDEADVMIDTQGFSDHSIRIQRALPSECQMLLFSATFED 284
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
+ + ++ E L + + K + LC I Y
Sbjct 285 SVWHFAERIIPDPNVIKLRKEELTLNNIRQYYVLCEHRKDKYQALCNI----YGSITIGQ 340
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
I+F +TR L + + G + + +T+ + I+ F+ G
Sbjct 341 AIIFCQTRRNAKWLTVEMIQD------------GHQVSLLSGELTVEQRASIIQRFR-DG 387
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFL 740
+LI T+V GID+ Q +V+ ++ + I GR +G +
Sbjct 388 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 447
Query 741 LTSNA---GVIEKEQINMYKEKMMNDSILRLQTWD 772
+ + + ++ N +++ + + ++ D
Sbjct 448 IEVDELPSLMKIQDHFNSSIKQLNAEDMDEIEKID 482
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (37%), Gaps = 11/138 (8%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFF 296
P K + L + L +N I + +G GKT +L + L+ FPQ +
Sbjct 120 PSKIQEMALPMMLAH-PPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ-----CLCL 173
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
A + Q V + + V + +P + III TP +++
Sbjct 174 APTYELALQTGRVVEQ-MGKFCVDVQVMYAIRGNRIPRGTDITK-QIIIGTPGTVLDWCF 231
Query 357 KGTIPSLSIFTLMIFDEC 374
K + L+ + + DE
Sbjct 232 KLKLIDLTKIRVFVLDEA 249
>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53
OS=Homo sapiens OX=9606 GN=DDX53 PE=1 SV=3
Length=631
Score = 86.4 bits (212), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/191 (19%), Positives = 69/191 (36%), Gaps = 25/191 (13%)
Query 612 EDLCFILQEEY--HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
E L +E+ +++P I+FV + + D L + G +
Sbjct 450 EKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQ------------GISAESL 497
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT-- 727
+ Q+ ++ FK SG+ ILI T + G+D+ V Y++ N+ +
Sbjct 498 HGNSEQSDQERAVEDFK-SGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVG 556
Query 728 -RGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR G+ L+T + E I + N S+ ++ V + +
Sbjct 557 YIGRTGKTGTSVTLITQRDSKMAGELIKIL--DRANQSVP-----EDLVVMAEQYKLNQQ 609
Query 787 EKFIRDSQEKP 797
++ KP
Sbjct 610 KRHRETRSRKP 620
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/297 (20%), Positives = 100/297 (34%), Gaps = 55/297 (19%)
Query 131 LINQECEEILQICSTKGMMAGAEKLVECLLRSDKE------------------------- 165
+IN E E ++I + M A A+ +E L+R +
Sbjct 84 IINGESEAKVRIFGNREMKAKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGRNDI 143
Query 166 --------NWPKTLKLALEKERNKFSELWIVEKGI----KDVET---------EDLEDKM 204
NW + +E E+ K+++L V+K K +
Sbjct 144 VGEAEPLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNI 203
Query 205 ETSDIQIFYQED---PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTI 261
D++ + P C+ P + KP Q + ++G + I
Sbjct 204 TCDDLKSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLI 263
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----VVFFANQIPVYEQQKSVFSKYFERH 317
+ A TG GKT L+ HL P ++ + ++ + +
Sbjct 264 VVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELAL-HVEAECSKYSYK 322
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + I G N +E I + DIII TP L N+L+ +L T ++ DE
Sbjct 323 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRL-NDLQMNNSVNLRSITYLVIDEA 378
>sp|Q8DDN6|RHLB_VIBVU ATP-dependent RNA helicase RhlB OS=Vibrio
vulnificus (strain CMCP6) OX=216895 GN=rhlB PE=3 SV=1
Length=435
Score = 85.2 bits (209), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/181 (20%), Positives = 70/181 (39%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNED-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ +++ + + + G+LTG + ++ IL+ F
Sbjct 258 --RAIIFANTKYKCESIWAHLAADGH----RVGLLTG--------DVPQKKREKILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G ++L+AT VA G+ I Q V Y+ + + I GR A G
Sbjct 303 TQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACE 362
Query 744 N 744
+
Sbjct 363 D 363
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/125 (18%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P + + + A + Q +
Sbjct 44 LSGQDIAGQAQTGTGKTLAFLTATFNHLLTTPAHEGRQPTQPRAIIMAPTRELAIQIYND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ D++I T +++ K+ + +L+ +
Sbjct 104 AEPLIASTGIKAALAYGGESYDKQLTKLQGGVDVLIGTTGRIIDFYKQ-RVFNLNNIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Scheffersomyces stipitis (strain ATCC 58785 /
CBS 6054 / NBRC 10063 / NRRL Y-11545) OX=322104 GN=PRP5 PE=3
SV=2
Length=875
Score = 86.8 bits (213), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/164 (22%), Positives = 70/164 (43%), Gaps = 25/164 (15%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGR 664
E+ K + L IL + + ++FV+ ++ D L + +P L+
Sbjct 510 EDEKFDRLLNILNVFSIESKHSKVLIFVEKQSAADDLLVKLLGSNHPCLTI--------- 560
Query 665 GKTNQNTGMTLPAQKCILDAF--KASGDHNILIATSVADEGIDIAQCNLVILYEYVG--- 719
+ G +K + F K SG +ILIATS+A G+D+ +LVI Y+
Sbjct 561 -----HGGKDQIDRKYAIKEFSSKDSG-VDILIATSIAARGLDVKGLDLVINYDPPNHME 614
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
+ + + GR +G+ ++S+ E+ ++ + M+
Sbjct 615 DYVHRVGRTGRAGMKGTAITFVSSD---QERSVTDLVRAMTMSK 655
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/230 (20%), Positives = 80/230 (35%), Gaps = 39/230 (17%)
Query 180 NKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQN--LSENSCPPSEVSDTNL 237
+KF +L K +ET D + + FYQE E QN + E+ +
Sbjct 207 SKFQKLQN----EKQLETIDHSTMNYSDFRKNFYQEPSEIQNWTAEQVESIRLELDGIKV 262
Query 238 YSPFKPR----------------------NY------QLELALPAMKGKNTIICAPTGCG 269
PR Y Q + M G++ I A TG G
Sbjct 263 AGSNVPRPVLKWSHLGLPASYMNIIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSG 322
Query 270 KTFVSLLICEHHLKKFPQGQKGK---VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
KT +L H++ P + G+ + + + Q + + +R G G
Sbjct 323 KTLSFVLPMLRHIQDQPDLKDGEGPIGLILSPTRELAVQIHKEITNFTKRLGMTACCCYG 382
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDEC 374
+ + ++ + I++ TP ++ L G I +L T ++ DE
Sbjct 383 GSPIESQIAELKKGAQILVGTPGRIIELLAANSGRITNLRRVTYVVLDEA 432
>sp|A5DVM3|IF4A_LODEL ATP-dependent RNA helicase eIF4A OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=TIF1 PE=3 SV=1
Length=397
Score = 84.8 bits (208), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/181 (20%), Positives = 69/181 (38%), Gaps = 17/181 (9%)
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ YN ++ E ++ + V + + L ++ E L+ ++ +
Sbjct 185 QIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQYFINVE 244
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E+ K + L + Y T ++F TR+ V+ L N +
Sbjct 245 VEDYKFDCLV----DLYDSISVTQAVIFCNTRSKVEFLTNKLREQKFTV----------- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + + + I+ F+ SG ILI+T + GID+ Q +LVI Y+ N I
Sbjct 290 -SAIHADLPQGERDTIMKEFR-SGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYI 347
Query 726 Q 726
Sbjct 348 H 348
Score = 63.3 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/211 (16%), Positives = 70/211 (33%), Gaps = 16/211 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q LP +G++ + A +G GKT + + + + + A
Sbjct 45 TPSAIQQRAILPITEGRDVLAQAQSGTGKT--ATFTISALQRIDENEKSTQALILAPTRE 102
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K+V + V G T+ + +E I++ TP + + +++
Sbjct 103 LALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYF- 161
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
+ I DE L + +++ T V + A
Sbjct 162 RTDKVKMFILDEA-------------DEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQ 208
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQV 452
+ L+ K + ++ + LE ++Q
Sbjct 209 DVLEVTTKFMNNPVRILVKKDELTLEGIKQY 239
>sp|Q755A5|DBP3_EREGS ATP-dependent RNA helicase DBP3 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP3 PE=3 SV=1
Length=535
Score = 86.0 bits (211), Expect = 6e-16, Method: Composition-based stats.
Identities = 35/187 (19%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP-KLEDLCFILQEEYHLN--PETITIL 632
A+ F ++ ++L + +++ +P K E L ++Y ++
Sbjct 317 ASTFMRAPVKVSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLI 376
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F + ++ ++ N G + ++ + L FKA G N
Sbjct 377 FALYKKEASRVERNLKYN------------GYNVAAIHGDLSQQQRTQALSEFKA-GTAN 423
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+L+AT VA G+DI VI + + I GR A G L T +
Sbjct 424 LLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHLA 483
Query 750 KEQINMY 756
+N+
Sbjct 484 GALVNVL 490
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/121 (21%), Positives = 53/121 (44%), Gaps = 3/121 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKY 313
+ GK+ I A TG GKTF + + L +G K + + + Q +
Sbjct 158 LAGKDVIGVAETGSGKTFAFGVPAINSLMSEKSTPRGVKCLVISPTRELASQIYDNLVQL 217
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
++ G + G ++ EQ ++ +++ TP L++ +++G+ L+ ++ DE
Sbjct 218 TDKVGLNCCCVYGGVQKDSQREQ-LKKAQVVVATPGRLLDLIEEGS-AKLAGVQYLVLDE 275
Query 374 C 374
Sbjct 276 A 276
>sp|Q8XAT4|RHLB_ECO57 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O157:H7 OX=83334 GN=rhlB PE=3 SV=3
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGANGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 42/114 (37%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A2RB17|RRP3_ASPNC ATP-dependent rRNA helicase rrp3 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=rrp3 PE=3 SV=1
Length=467
Score = 85.2 bits (209), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/179 (22%), Positives = 68/179 (38%), Gaps = 21/179 (12%)
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
T +++ L+S P K L ++L E + TI+F +T L
Sbjct 254 TSKYQTVSTLLQSYLFIPQKH--KDLYLVYLLNEFAGQS----TIIFTRTVNETQRLAFL 307
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ G G + ++ A+ L F+A NIL+AT VA G+DI
Sbjct 308 LRA------------LGFGAIPLHGQLSQSARLGALGKFRARSR-NILVATDVAARGLDI 354
Query 707 AQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL-LTSNAGVIEKEQINMYKEKMMND 763
++V+ ++ G+ + GR RA S + + V +I K + +
Sbjct 355 PSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGKKLKE 413
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 2/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A+KG++ I A TG GKT L L + PQ G V A + Q
Sbjct 75 QRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKPQPFFGLV--LAPTRELAYQI 132
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F G R I G + + II+ TP L+++L+ SL
Sbjct 133 SKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKPHIIVATPGRLLDHLENTKGFSLRNL 192
Query 367 TLMIFDEC 374
++ DE
Sbjct 193 KYLVMDEA 200
>sp|A1SAL1|RHLB_SHEAM ATP-dependent RNA helicase RhlB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) OX=326297 GN=rhlB
PE=3 SV=1
Length=439
Score = 85.2 bits (209), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/251 (18%), Positives = 86/251 (34%), Gaps = 16/251 (6%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ + K+ L+ L +++ + + E +E S + P +
Sbjct 181 FLFNRMPGAKERLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSM 240
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
ED +L + I+F T+ + L +E + + G+LTG
Sbjct 241 EDKLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGH----RVGLLTG-------- 288
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTR 728
+ + IL+ F S + +IL+AT VA G+ I+ + V Y+ + + I
Sbjct 289 DVPQKKRLKILEQFTQS-ELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRT 347
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
GR +G + + K + S R D + +
Sbjct 348 GRAGQKGVSVSFACEEYALNLPAIEDYIKHSIPVTSYDRDALIDIPPPVKIHRKPHAGGR 407
Query 789 FIRDSQEKPKP 799
+RD P+P
Sbjct 408 NLRDRNGSPRP 418
Score = 60.2 bits (144), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 51/125 (41%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++ K+ A TG GKT L+ +HL P Q + + + A + Q
Sbjct 44 LEKKDIAGQAQTGTGKTLAFLVATFNHLLTTPVPEHRQLNQPRAIVMAPTRELAIQIAKD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ + G +V + G + + + D++I T +++ +++G I L +
Sbjct 104 ATLLSKHSGLKVGIVYGGEGYEAQRKVLDKGVDVLIGTTGRIIDYVRQGVIN-LGAIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A5UDI1|RHLB_HAEIE ATP-dependent RNA helicase RhlB OS=Haemophilus
influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1
Length=415
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/223 (18%), Positives = 82/223 (37%), Gaps = 21/223 (9%)
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
Q+ DE R+ + +R + L + ++
Sbjct 157 EIQVVVLDEADRMF--DLGFIRDIRYLLRKCPTPQVRLTMLFSATLSYKVRELAFEDMND 214
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E + ++ ++ PSN++ K+ L ++++E+ I+F T+ +
Sbjct 215 PEYIEIEPEQKTGHRIKEELFYPSNQD-KMALLLTLMEDEWPE----RCIVFANTKHRCE 269
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
+ ++ + + G+LTG + + +L F GD +IL+AT VA
Sbjct 270 EIWGYLAADGH----RVGLLTG--------DVAQKKRLSLLKQF-TDGDLDILVATDVAA 316
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTS 743
G+ I+ V Y+ + + GR GRA S + +
Sbjct 317 RGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSISFA 359
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ----KGKVVFFANQIPVYEQQKSV 309
++ G++ A TG GKT L HHL + + A+ + Q +
Sbjct 43 SLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPNLEYPHPRALILASTRELAVQISND 102
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G + ++ I DI+I T +++ +K+G I L ++
Sbjct 103 AEFLAKACGLKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIG-LDEIQVV 161
Query 370 IFDEC 374
+ DE
Sbjct 162 VLDEA 166
>sp|Q5RC67|DDX23_PONAB Probable ATP-dependent RNA helicase DDX23
OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Length=820
Score = 86.4 bits (212), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 20/156 (13%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K + L IL++ + + I+FV + D L +E G
Sbjct 648 ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK------------MGYNA 691
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIK 723
+ G ++ L KA G +IL+AT VA GIDI ++V+ Y+ N I
Sbjct 692 CTLHGGKGQEQREFALSNLKA-GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIH 750
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I GR G LT + E E
Sbjct 751 RIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES 786
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 84/224 (38%), Gaps = 31/224 (14%)
Query 176 EKERNKFSEL--------WIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSC 227
E+E +F +L W ++ + +++ D+ D +IF ++ +
Sbjct 334 EQEEARFRKLRKKEAKQRWD-DRHWSQKKLDEMTDR----DWRIFREDYSITTKGGKIPN 388
Query 228 PPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTIICAPTGCGKT---FVS 274
P D++L +P Q + ++ ++ I A TG GKT +
Sbjct 389 PIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIP 448
Query 275 LLICEHHL----KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
LL+ L + Q + A + +Q + K+ + G R + G +
Sbjct 449 LLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISR 508
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ +I+I TP L++ L+ + S T ++ DE
Sbjct 509 EDQGFRLRMGCEIVIATPGRLIDVLENRYLVP-SRCTYVVLDEA 551
>sp|Q0UK12|RRP3_PHANO ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=RRP3 PE=3 SV=2
Length=546
Score = 85.6 bits (210), Expect = 6e-16, Method: Composition-based stats.
Identities = 60/361 (17%), Positives = 120/361 (33%), Gaps = 46/361 (13%)
Query 459 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN----REFGTQKYEQWIV 514
F + + DK + +M T LA +I + ++ L I N G +
Sbjct 169 FVLPILQALLDKPQAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAI 228
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNV 574
+ K + + HL+ L ++ D D L F +
Sbjct 229 ALSKRPHIIVASPGRLLDHLENTKGFSLKHLKYLV--LDEADRLLDLDFGDSLDKIFKVL 286
Query 575 RAAGFDEIEQDLTQRFEEKLQELESVS-RDP------SNENPKLEDLCF----------- 616
D + K++ L+ + ++P S+ + + L
Sbjct 287 PRD--DRHTYLFSATMSSKVESLQRAALKNPVRVSISSSSHQVVSTLLQSYMLIPHKYKD 344
Query 617 -ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L + N TILF +T L + G + ++
Sbjct 345 LYLIHLLNDNIGHATILFTRTVNETQRLAVLLRT------------LGFQALPLHGQLSQ 392
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA- 733
+ L+ FKA +IL+AT VA G+DI +LV+ ++ + + GR RA
Sbjct 393 SNRLGALNKFKAKAR-DILVATDVAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAG 451
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
+ K + + ++I K + + ++ + V+ E++ + +R+
Sbjct 452 KSGKAVSFVTQYDLEIFQRIEHALGKQVPEE--KVSRDEVMVYAERV--GEAQRVAVREM 507
Query 794 Q 794
+
Sbjct 508 K 508
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 46/128 (36%), Gaps = 2/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A+ GK+ I A TG GKT +L L PQ G + A + Q
Sbjct 142 QTESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKPQAYFGLI--MAPTRELAYQI 199
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ + G + + II+ +P L+++L+ SL
Sbjct 200 SQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLENTKGFSLKHL 259
Query 367 TLMIFDEC 374
++ DE
Sbjct 260 KYLVLDEA 267
>sp|Q5QYF8|RHLB_IDILO ATP-dependent RNA helicase RhlB OS=Idiomarina
loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942
GN=rhlB PE=3 SV=1
Length=425
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 37/185 (20%), Positives = 68/185 (37%), Gaps = 24/185 (13%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
L Y + ++E + Q+ ++ E P K L +++E++
Sbjct 199 TLSYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPE----KFPLLLTLIEEDW 254
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
I+F T+ + + W+ N + G+LTG + + IL
Sbjct 255 PD----KAIVFANTKHGCEKVHGWLVANEH----RAGLLTG--------DVPQKKRLRIL 298
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCF 739
+ F A G + L+AT VA G+ I + V ++ + + I GR A G+
Sbjct 299 EDF-AEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAGASGAAIS 357
Query 740 LLTSN 744
L
Sbjct 358 LACEE 362
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/125 (22%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ----KGKVVFFANQIPVYEQQKSV 309
A+ ++ A TG GKT LL + L + + + + A + Q
Sbjct 43 ALSNRDVAGQAQTGTGKTLAFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIAHD 102
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
E G ++ I G EQ+ DI++ T L++ K+ + SL ++
Sbjct 103 ADALIEHCGLKMGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFYKQ-DLFSLKDIEVV 161
Query 370 IFDEC 374
+ DE
Sbjct 162 VLDEA 166
>sp|Q3YVI4|RHLB_SHISS ATP-dependent RNA helicase RhlB OS=Shigella
sonnei (strain Ss046) OX=300269 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|P0A8K0|RHLB_SHIFL ATP-dependent RNA helicase RhlB OS=Shigella
flexneri OX=623 GN=rhlB PE=3 SV=2
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q0SYX0|RHLB_SHIF8 ATP-dependent RNA helicase RhlB OS=Shigella
flexneri serotype 5b (strain 8401) OX=373384 GN=rhlB PE=3
SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q329V8|RHLB_SHIDS ATP-dependent RNA helicase RhlB OS=Shigella
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 44/114 (39%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P + K + + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q31UK5|RHLB_SHIBS ATP-dependent RNA helicase RhlB OS=Shigella
boydii serotype 4 (strain Sb227) OX=300268 GN=rhlB PE=3
SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B2TU12|RHLB_SHIB3 ATP-dependent RNA helicase RhlB OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609
GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7LU75|RHLB_ESCF3 ATP-dependent RNA helicase RhlB OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766
/ IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128
/ CDC 0568-73) OX=585054 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q1R4F9|RHLB_ECOUT ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain UTI89 / UPEC) OX=364106 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B6I4B6|RHLB_ECOSE ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain SE11) OX=409438 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7NF85|RHLB_ECOLU ATP-dependent RNA helicase RhlB OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|P0A8J8|RHLB_ECOLI ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain K12) OX=83333 GN=rhlB PE=1 SV=2
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B1IWC0|RHLB_ECOLC ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB
8545 / WDCM 00012 / Crooks) OX=481805 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|P0A8J9|RHLB_ECOL6 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310
GN=rhlB PE=3 SV=2
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q0TAU3|RHLB_ECOL5 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) OX=362663 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A1AHV0|RHLB_ECOK1 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O1:K1 / APEC OX=405955 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A8A6N4|RHLB_ECOHS ATP-dependent RNA helicase RhlB OS=Escherichia
coli O9:H4 (strain HS) OX=331112 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B1X9Z4|RHLB_ECODH ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain K12 / DH10B) OX=316385 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|C4ZZ48|RHLB_ECOBW ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain K12 / MC4100 / BW2952) OX=595496 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7M5C7|RHLB_ECO8A ATP-dependent RNA helicase RhlB OS=Escherichia
coli O8 (strain IAI1) OX=585034 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7MR01|RHLB_ECO81 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O81 (strain ED1a) OX=585397 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7NTG2|RHLB_ECO7I ATP-dependent RNA helicase RhlB OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rhlB PE=3
SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5YY28|RHLB_ECO5E ATP-dependent RNA helicase RhlB OS=Escherichia
coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 42/114 (37%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7L8B6|RHLB_ECO55 ATP-dependent RNA helicase RhlB OS=Escherichia
coli (strain 55989 / EAEC) OX=585055 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7MGJ1|RHLB_ECO45 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rhlB PE=3
SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B7UMN5|RHLB_ECO27 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A7ZTY2|RHLB_ECO24 ATP-dependent RNA helicase RhlB OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) OX=331111 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEEI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/114 (23%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A4RK80|PRP28_PYRO7 Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617
/ FGSC 8958) OX=242507 GN=PRP28 PE=3 SV=1
Length=674
Score = 86.0 bits (211), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 66/191 (35%), Gaps = 26/191 (14%)
Query 592 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 651
+ +++ KL + + I+FV T++ DA+ ++
Sbjct 502 DTVEQQAMWVVSEDERRNKLRAMLN------TYGTGKLVIVFVNTKSNCDAVAKDLKS-- 553
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
+ + T ++ L +F+ G N+L+AT VA G+DI +L
Sbjct 554 ----------SSFSAVTLHGNKTQDQREAALQSFR-DGRTNVLVATDVAARGLDIPDVSL 602
Query 712 VILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
VI + G I GR G + + G + + K+ M + ++
Sbjct 603 VINFNMAGTIEVYTHRIGRTGRAGKEG----MAITFCGPEDHGVLYHLKQIMSKSQMSKV 658
Query 769 QTWDEAVFREK 779
W + +
Sbjct 659 PPWLKDHPEAQ 669
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/194 (21%), Positives = 75/194 (39%), Gaps = 9/194 (5%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQ 247
+K + + T D +I P E S P + DT + +P Q
Sbjct 225 DKELSQMTTRDWRLFKVNLEIVTKGNNIPNPMRFWEESNLPHVLKDTIKQVGYTEPTPVQ 284
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIP 301
A++ ++ I + TG GKT +L +++ P + + + A
Sbjct 285 RAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPYALILAPTRE 344
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTI 360
+ Q ++ K+ R G+ V + G + N +II+ TP LV+ L++ +
Sbjct 345 LATQIQAEVIKFATRMGFTVVCLIGNKRTIEEDAFALRNGAEIIVATPGRLVDCLERHLL 404
Query 361 PSLSIFTLMIFDEC 374
LS + ++ DE
Sbjct 405 V-LSQCSYVVLDEA 417
>sp|Q9BUQ8|DDX23_HUMAN Probable ATP-dependent RNA helicase DDX23
OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Length=820
Score = 86.4 bits (212), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 20/156 (13%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K + L IL++ + + I+FV + D L +E G
Sbjct 648 ESEKRKKLLAILEQGF----DPPIIIFVNQKKGCDVLAKSLEK------------MGYNA 691
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIK 723
+ G ++ L KA G +IL+AT VA GIDI ++V+ Y+ N I
Sbjct 692 CTLHGGKGQEQREFALSNLKA-GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIH 750
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I GR G LT + E E
Sbjct 751 RIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILES 786
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/217 (19%), Positives = 83/217 (38%), Gaps = 25/217 (12%)
Query 175 LEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSD 234
L K+ K + W ++ + +++ D+ D +IF ++ + P D
Sbjct 343 LRKKEAK--QRWD-DRHWSQKKLDEMTDR----DWRIFREDYSITTKGGKIPNPIRSWKD 395
Query 235 TNLYSPF----------KPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHH 281
++L +P Q + ++ ++ I A TG GKT + LL+
Sbjct 396 SSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITT 455
Query 282 L----KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI 337
L + Q + A + +Q + K+ + G R + G + ++
Sbjct 456 LPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRL 515
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ + LS T ++ DE
Sbjct 516 RMGCEIVIATPGRLIDVLENRYLV-LSRCTYVVLDEA 551
>sp|A7MXT4|RHLB_VIBC1 ATP-dependent RNA helicase RhlB OS=Vibrio
campbellii (strain ATCC BAA-1116) OX=2902295 GN=rhlB PE=3
SV=1
Length=437
Score = 84.8 bits (208), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/181 (20%), Positives = 71/181 (39%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSNED-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ +++ G+ + G+LTG + ++ IL+ F
Sbjct 258 --RAIVFANTKHKCESI----WGHLAADGHRVGLLTG--------DVPQKKREKILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G+ ++L+AT VA G+ I Q V ++ + + I GR A G
Sbjct 303 TRGEVDLLVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGASGHSISFACE 362
Query 744 N 744
+
Sbjct 363 D 363
Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 51/125 (41%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P+ + K + A + Q +
Sbjct 44 LTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRKPTQPRAIIMAPTRELAIQIFND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G + + + ++ + DI+I T +++ K+ + +L+ +
Sbjct 104 AAPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ-RVFNLNNIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|A6TGG9|RHLB_KLEP7 ATP-dependent RNA helicase RhlB OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) OX=272620 GN=rhlB PE=3 SV=1
Length=421
Score = 84.8 bits (208), Expect = 7e-16, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +L+EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLLEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + IL+ F
Sbjct 258 --RAIVFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILEEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 50/125 (40%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSV 309
++G++ A TG GKT L H+L P Q + + + A + Q +
Sbjct 44 LEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHAD 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G ++ G + ++ + DI+I T L++ K+ I L ++
Sbjct 104 AEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q93ZG7|RH38_ARATH DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis
thaliana OX=3702 GN=RH38 PE=1 SV=2
Length=496
Score = 85.2 bits (209), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 98/286 (34%), Gaps = 30/286 (10%)
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
++W+ + ++ DE + L+ D ++ + ++
Sbjct 224 TLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATF 283
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
+ + A + Q +R + L ++ E K+E + + E +
Sbjct 284 NETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDI--- 340
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
TI+FVKT+A + + G T+ + +T + I+ FK
Sbjct 341 GQTIIFVKTKASAQKVHKALAE------------MGYDVTSVHGNLTESDRDKIVKEFKE 388
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGN----------VIKMIQTRGRGRARGSK 737
+LIAT V G D + NLV+ Y + + GR +G+
Sbjct 389 C-LTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAV 447
Query 738 CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD-EAVFREKILH 782
LL + E + EK ++ +++W+ E ++ +
Sbjct 448 FNLLLDDGWDKE---VMEKIEKYFEANVKEIKSWNSEEEYKSALKE 490
Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 69/449 (15%), Positives = 142/449 (32%), Gaps = 58/449 (13%)
Query 204 METSDIQIFYQE-------DPECQNLSENSCPPSEVS------DTNLYSPFKPRNYQLEL 250
E + + I +E +PE N+ + + + D NL Y +E+
Sbjct 52 SELNSLSIKEEEKPDSILEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLY-VEM 110
Query 251 ALPAMKG--------------KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
K+ I A G GKT +L + P ++ + +
Sbjct 111 KFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLS--RVDPTLREPQALCI 168
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP--VEQIVENNDIIILTPQILVNN 354
+ Q V K + G + P + ++I TP L
Sbjct 169 CPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTLKKW 228
Query 355 LKKGTIPSLSIFTLMIFDECHNTSKQHPYN----MIMFNYLDQKLGGSSGPLPQVIGLTA 410
+ + L+ +++FDE + + IM + G P QV+ +A
Sbjct 229 MAFKRLG-LNHLKILVFDEADHMLATDGFRDDSLKIMKDI------GRVNPNFQVLLFSA 281
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+ + +L + + +VK + + V K Q ++ +I +
Sbjct 282 TFNETVKDFVARTVKDPNQLFVKREDLALDSVK----QYKVVCPKEQNKIEVIKDQIMEL 337
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG--TQKYEQWIVTVQKACMVFQMPDK 528
+ T++ A+++ K L + G T+ IV K C+ +
Sbjct 338 GDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIAT 397
Query 529 DEESRIC----KALFLYTSHLRKYNDALI-----ISEHARMKDALDYLKDFFSNVRAAGF 579
D +R L + + KY + R F +
Sbjct 398 DVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWD 457
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNEN 608
E+ + + + FE ++E++S + + ++
Sbjct 458 KEVMEKIEKYFEANVKEIKSWNSEEEYKS 486
>sp|Q9Y2R4|DDX52_HUMAN Probable ATP-dependent RNA helicase DDX52
OS=Homo sapiens OX=9606 GN=DDX52 PE=1 SV=4
Length=599
Score = 85.6 bits (210), Expect = 7e-16, Method: Composition-based stats.
Identities = 62/359 (17%), Positives = 129/359 (36%), Gaps = 46/359 (13%)
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ-LMRD 481
+ + +L AS T+ ++ L Q+ K FR + + + I + L++
Sbjct 198 VMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 257
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+E RI + + + + ++FG + +++ + V + + +D
Sbjct 258 SEGTGFRI--HMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG----IDLAS 311
Query 542 TSHLRKYNDALIISEHA---RMKDALDYLKDFFSNVRAAGFDEI-EQDLTQRFEEKLQEL 597
L + + R + A +L VR A F D+ Q + L +
Sbjct 312 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNV 371
Query 598 ESVSRDP---------------SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDA 642
SVS +E KL + ++++ ++ ++FV++
Sbjct 372 ISVSIGARNSAVETVEQELLFVGSETGKLLAVRELVKKGFNPP----VLVFVQSIERAKE 427
Query 643 LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
L + + I G + T + + +F+A G +LI T++
Sbjct 428 LFHEL------------IYEGINVDVIHAERTQQQRDNTVHSFRA-GKIWVLICTALLAR 474
Query 703 GIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
GID NLVI Y++ + I I GR +G T + + + N+ ++
Sbjct 475 GIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQ 533
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/158 (23%), Positives = 66/158 (42%), Gaps = 6/158 (4%)
Query 220 QNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLIC 278
Q L + S + L + F+ P Q++ + G+ + APTG GKT +
Sbjct 164 QQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPI 223
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG-ATAENVPVEQI 337
LK+ P + + + + + Q K E G+R+ I A A +
Sbjct 224 LMQLKQ-PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 282
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTL--MIFDE 373
+ DI++ TP L+ LK+ P + + ++ ++ DE
Sbjct 283 SKKFDILVTTPNRLIYLLKQ-DPPGIDLASVEWLVVDE 319
>sp|B4F1V3|RHLB_PROMH ATP-dependent RNA helicase RhlB OS=Proteus
mirabilis (strain HI4320) OX=529507 GN=rhlB PE=3 SV=1
Length=432
Score = 84.8 bits (208), Expect = 7e-16, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 86/243 (35%), Gaps = 30/243 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNPEYVEVEPEQKTGFSIKEELFYPSNE-EKMRLLQTLIEEEWPE-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ D + + + + G+LTG + + IL+ F
Sbjct 258 --RCIIFANTKHRCDDIWAHLAADGH----RVGLLTG--------DVPQKKRLRILEDF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
G+ +IL+AT VA G+ I V Y+ + + I GR G+ L
Sbjct 303 TQGNIDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGKSGNSISL--- 359
Query 744 NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDK 803
E+ +N+ + + + ++ + + + R Q +P+
Sbjct 360 ---ACEEYALNLPAIETYIQHAIPVSKYNSDALLTDLPEPK---RRHRPRQGQPRRNNSA 413
Query 804 ENK 806
+
Sbjct 414 PRR 416
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/124 (22%), Positives = 50/124 (40%), Gaps = 6/124 (5%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSVF 310
KG + A TG GKT L H+L P + + + A + Q +
Sbjct 45 KGHDIAGQAQTGTGKTLAFLTSTFHYLLTHPAKEGHEKNQPRALIMAPTRELAVQIYTDA 104
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+ G ++ G + ++ + DI+I T L++ +K+G I L+ +++
Sbjct 105 QPLAQSTGVKMGLAYGGDGYDEQLKVLNNGVDIVIGTTGRLIDYVKQGHIN-LNAIQVVV 163
Query 371 FDEC 374
DE
Sbjct 164 LDEA 167
>sp|Q6CDS6|ROK1_YARLI ATP-dependent RNA helicase ROK1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=ROK1 PE=3
SV=1
Length=547
Score = 85.6 bits (210), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/335 (17%), Positives = 110/335 (33%), Gaps = 36/335 (11%)
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC 490
CA + + E+ + + +++ + K + +Q+ SL +
Sbjct 154 CAPTGSGKTMAYSIPMVEMLGKKKGSKDAKKGIKALVVAPTKELASQIFNAVFSLCVGVG 213
Query 491 KDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 550
K + L + K V+ QK + P + + +L L + L +++
Sbjct 214 KKKDELKPCLLDKSTADKLRNGKVSSQKYDICITTPLRLVSALNDGSLDLGSLDLVIFDE 273
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL---------------- 594
A + E D L S ++ F ++ +
Sbjct 274 ADKLFEKGFATQVDDILAACPSGIQKTLFSATIPASVEQLANSIMSTDPLRIIIGNKQAA 333
Query 595 -QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
Q +E NE KL + + +E + P I+F+++ AL +
Sbjct 334 AQTVEQKLVYAGNEEGKLVAIRQMAREGQLVAP---VIIFLQSIDRAKALFKEL------ 384
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+ G + MT + ++D F+ +G+ +LI T V GID NLVI
Sbjct 385 ------VFDGINVDQIHGDMTAAKRASVIDRFR-NGEVWVLICTDVLARGIDFRGINLVI 437
Query 714 LYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNA 745
Y+ + + I GR G T
Sbjct 438 NYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKED 472
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/156 (24%), Positives = 59/156 (38%), Gaps = 17/156 (11%)
Query 235 TNLYSPFKPRNY------QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
L + K Y Q E + G++ I CAPTG GKT + L K
Sbjct 120 PYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMVEMLGKKKGS 179
Query 289 QKG----KVVFFANQIPVYEQQKSVFSKYFERHG-----YRVTGISGATAENVPVEQI-V 338
+ K + A + Q + G + + +TA+ + ++
Sbjct 180 KDAKKGIKALVVAPTKELASQIFNAVFSLCVGVGKKKDELKPCLLDKSTADKLRNGKVSS 239
Query 339 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ DI I TP LV+ L G++ L L+IFDE
Sbjct 240 QKYDICITTPLRLVSALNDGSLD-LGSLDLVIFDEA 274
>sp|Q87KH5|RHLB_VIBPA ATP-dependent RNA helicase RhlB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926
GN=rhlB PE=3 SV=1
Length=437
Score = 84.8 bits (208), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/225 (19%), Positives = 81/225 (36%), Gaps = 21/225 (9%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + E + + ++ ++ PSNE+ K+ L +++EE+
Sbjct 201 LSYRVQELAFEHMHNPEHVVVEPAQKTGHRIQEELFYPSNED-KMALLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ +++ G+ + G+LTG + ++ IL+ F
Sbjct 258 --RAIVFANTKHKCESV----WGHLAADGHRVGLLTG--------DVPQKKREKILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSN 744
GD +IL+AT VA G+ I Q V Y+ + + GR G
Sbjct 303 TKGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACE 362
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE-KILHIQTHEK 788
I I Y E + S + + ++ + ++
Sbjct 363 EYAINLPAIEEYIEHTIPVSEYDASALIQDLPAPIRMRAPRVQQR 407
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSV 309
+ G++ A TG GKT L +HL P+ + + + A + Q +
Sbjct 44 LTGQDIAGQAQTGTGKTLAFLTATFNHLLTTPEHEGRQPTQPRAIIMAPTRELAIQIFND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
G + G + + + ++ + DI+I T +++ K+ + +L+ +
Sbjct 104 AEPLIASTGLKAALAYGGESYDKQLAKLQDGVDILIGTTGRIIDFYKQ-RVFNLNNIQAV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|P9WH05|DEAD_MYCTU ATP-dependent RNA helicase DeaD OS=Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=deaD
PE=1 SV=1
Length=563
Score = 85.6 bits (210), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/264 (16%), Positives = 91/264 (34%), Gaps = 15/264 (6%)
Query 505 GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDAL 564
G ++ Q +V + + SR+ + + A +
Sbjct 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 624
+ F + + A + L FE + +V+ + S ++ L +
Sbjct 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
P I+FV+T+ + + + G + + ++ + A
Sbjct 248 EPFEAMIVFVRTKQATEEIAEKLRAR------------GFSAAAISGDVPQAQRERTITA 295
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
+ GD +IL+AT VA G+D+ + + V+ Y+ + + GR GRA R +
Sbjct 296 LR-DGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFV 354
Query 743 SNAGVIEKEQINMYKEKMMNDSIL 766
S + + I + + ++ L
Sbjct 355 SPRELHLLKAIEKATRQTLTEAQL 378
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 4/110 (4%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE-RHGYRVTGI 324
TG GKT + + + + + + Q F +Y V I
Sbjct 59 TGTGKTAAFAIPMLSKID--ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPI 116
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G ++ V + + +++ TP ++++L++ T+ LS ++ DE
Sbjct 117 YGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLD-LSRVDFLVLDEA 165
>sp|P9WH04|DEAD_MYCTO ATP-dependent RNA helicase DeaD OS=Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=deaD
PE=3 SV=1
Length=563
Score = 85.6 bits (210), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/264 (16%), Positives = 91/264 (34%), Gaps = 15/264 (6%)
Query 505 GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDAL 564
G ++ Q +V + + SR+ + + A +
Sbjct 128 GLRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEY 187
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 624
+ F + + A + L FE + +V+ + S ++ L +
Sbjct 188 KQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV 247
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
P I+FV+T+ + + + G + + ++ + A
Sbjct 248 EPFEAMIVFVRTKQATEEIAEKLRAR------------GFSAAAISGDVPQAQRERTITA 295
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
+ GD +IL+AT VA G+D+ + + V+ Y+ + + GR GRA R +
Sbjct 296 LR-DGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFV 354
Query 743 SNAGVIEKEQINMYKEKMMNDSIL 766
S + + I + + ++ L
Sbjct 355 SPRELHLLKAIEKATRQTLTEAQL 378
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 4/110 (4%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE-RHGYRVTGI 324
TG GKT + + + + + + Q F +Y V I
Sbjct 59 TGTGKTAAFAIPMLSKID--ITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPI 116
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G ++ V + + +++ TP ++++L++ T+ LS ++ DE
Sbjct 117 YGGSSYAVQLAGLRRGAQVVVGTPGRMIDHLERATLD-LSRVDFLVLDEA 165
>sp|P23394|PRP28_YEAST Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=PRP28 PE=1 SV=2
Length=588
Score = 85.6 bits (210), Expect = 8e-16, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 18/162 (11%)
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
++ V N+ K + L I+ + + I+F+ + D L + +
Sbjct 411 IQQVVEYADNDEDKFKKLKPIVAKY-----DPPIIIFINYKQTADWLAEKFQKETNMK-- 463
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ G + ++ L F+ + I+IAT+VA G+DI +LV+ ++
Sbjct 464 ---VTILHGSKS------QEQREHSLQLFRTN-KVQIMIATNVAARGLDIPNVSLVVNFQ 513
Query 717 YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+ I GR GRA + +A E +YK
Sbjct 514 ISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELYK 555
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 52/128 (41%), Gaps = 16/128 (13%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQG-------QKGKVVFFANQIPVYEQ-QKS---- 308
+ A TG GKT ++ + + P K + A + +Q QK
Sbjct 218 LGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALILAPTRELVQQIQKETQKV 277
Query 309 --VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
++SK ++ + G + E + + E DI++ TP L+++L+ + +
Sbjct 278 TKIWSKESNYDCKVISIVGGHSLEEISFS-LSEGCDILVATPGRLIDSLENHLLVMKQVE 336
Query 367 TLMIFDEC 374
TL + DE
Sbjct 337 TL-VLDEA 343
>sp|Q9P6N8|RRP3_SCHPO ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp3
PE=3 SV=1
Length=465
Score = 84.8 bits (208), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 57/156 (37%), Gaps = 19/156 (12%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +++ E I+F +T L + G
Sbjct 272 KDTYLVYLVNEL----AGNSIIIFARTVNDTQRLAILLRT------------LGFSAIPL 315
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ + L+ FK SG + L+AT VA G+DI ++VI Y+ + I G
Sbjct 316 HGQLSQSNRLGALNKFK-SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVG 374
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
R RA R K L + + +I K M +
Sbjct 375 RTARAGRAGKSIALVTQYDLEPFLRIEATIGKKMQE 410
Score = 72.9 bits (177), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 44/133 (33%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E + ++ I A TG GKT L L P V A
Sbjct 68 TPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNP--SPFFAVVLAPTRE 125
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q F G R I G + + +++ TP L+++L+
Sbjct 126 LAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGF 185
Query 362 SLSIFTLMIFDEC 374
SL +I DE
Sbjct 186 SLKNLKYLIMDEA 198
>sp|A8G828|RHLB_SERP5 ATP-dependent RNA helicase RhlB OS=Serratia
proteamaculans (strain 568) OX=399741 GN=rhlB PE=3 SV=1
Length=428
Score = 84.5 bits (207), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/206 (19%), Positives = 74/206 (36%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R + + L + + E + ++ ++
Sbjct 173 LGFIKDIRWLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIK 232
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSNE K+ L +++EE+ I+F T+ + + G+ +
Sbjct 233 EELFYPSNE-EKMRLLQTLIEEEWPD----RCIIFANTKHRCEDV----WGHLAADGHRV 283
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + ILD F G+ +IL+AT VA G+ I V Y+
Sbjct 284 GLLTG--------DVAQKKRLRILDDF-TKGNLDILVATDVAARGLHIPLVTHVFNYDLP 334
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 335 DDCEDYVHRIGRTGRAGESGHSISLA 360
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 44/114 (39%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P Q K+ + A + Q S + G +
Sbjct 55 TGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALSQSTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI++ T L++ K+ I L +++ DE
Sbjct 115 MGLAYGGDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYID-LGAIQVVVLDEA 167
>sp|Q5HME0|CSHA_STAEQ DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279
GN=cshA PE=3 SV=1
Length=509
Score = 85.2 bits (209), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/340 (16%), Positives = 129/340 (38%), Gaps = 35/340 (10%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I +++
Sbjct 74 ILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL--KDFFSNVRAAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + + + + +A + Q+L
Sbjct 134 LNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++++ I++E + T + I+F +T+
Sbjct 194 QQFMKAPKIIK--TMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + G + +T + +L FK +IL+AT
Sbjct 252 RVDELTSALLSK------------GYKAEGLHGDITQAKRLEVLKKFKND-QIDILVATD 298
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
VA G+DI+ + V ++ + GR R K + + IE + I ++
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGR-TGRAGKEGIAVTFVNPIEMDYIRQIED 357
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
+ V + + I+ + + +P+
Sbjct 358 VNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPR 397
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ + +V + G ++ +
Sbjct 61 --IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKR 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTQGIHTLILDEA 152
>sp|A2QFL3|DBP3_ASPNC ATP-dependent RNA helicase dbp3 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp3 PE=3 SV=1
Length=495
Score = 85.2 bits (209), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 52/154 (34%), Gaps = 17/154 (11%)
Query 608 NPKLEDLCFILQEEYHLNPET-ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
+ K + L +L + + ++F + ++ + G
Sbjct 310 HEKEQRLVQLLNKYQKGPSSSDKILVFCLYKKEAVRVERLLWNK------------GFKV 357
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIK 723
+ + + L++FK G +L+AT VA G+DI LVI + +
Sbjct 358 AGIHGDLGQQERFKSLESFK-KGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVH 416
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
I GR A G L T IN+ K
Sbjct 417 RIGRTGRAGAEGHAITLFTEVDKAQSGALINVLK 450
Score = 57.5 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/121 (25%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGK--VVFFANQIPVYEQQKSVFSKY 313
G++ I A TG GKT L C +L+ +G+ K V + + Q SK+
Sbjct 115 GRDVIGIAETGSGKTLGFGLPCLKNLQDSAKKGKPYKPTAVMISPTRELAMQIHDQISKF 174
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
E +V I G + E ++ I++ TP L +L+ L ++ DE
Sbjct 175 AELVDIKVACIFGGVKKEEQRE-ALKTAAIVVATPGRL-KDLQNDGSVDLGKVKYLVLDE 232
Query 374 C 374
Sbjct 233 A 233
>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila
melanogaster OX=7227 GN=abs PE=1 SV=1
Length=619
Score = 85.6 bits (210), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 18/184 (10%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+ K+ L LQ+ ++F + + VD + ++ +L G
Sbjct 412 KQEAKVVYLLDCLQK-----TAPPVLIFAEKKQDVDCIHEYL------------LLKGVE 454
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ G + +DA++ G ++L+AT VA +G+D VI Y+ ++ +
Sbjct 455 AVAIHGGKDQEERSRAVDAYRV-GKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYV 513
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR +K T E+ + K ++ DE + H+
Sbjct 514 HRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQHLDL 573
Query 786 HEKF 789
+
Sbjct 574 GDSH 577
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 14/202 (7%)
Query 186 WIVEKGIKDVETEDLE-DKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPR 244
W + I+++ E+ E + E + P ++ E P ++ P
Sbjct 142 WKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPT 201
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKK-----FPQGQKGKVVFFAN 298
Q++ + G++ I A TG GKT V +L + L++ F + + +
Sbjct 202 PIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICP 261
Query 299 QIPVYEQQKSVF---SKYFERHG---YRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ +Q + SK+ + G R G + ++ I I++ TP L+
Sbjct 262 SRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLM 321
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+ L K I +L + + DE
Sbjct 322 DMLDK-KILTLDMCRYLCMDEA 342
>sp|A7TK55|IF4A_VANPO ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=TIF1 PE=3 SV=1
Length=396
Score = 84.1 bits (206), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/154 (21%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V + L ++ E L+ ++ + E K L + Y T ++
Sbjct 211 EVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKF----DCLSDLYDSISVTQAVI 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + ++ + + + I+ F+ SG
Sbjct 267 FCNTRRKVEELTQKLTE--------SNFTV----SSIYSDLPQQERDVIMKEFR-SGSSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 314 ILISTDLLARGIDVQQVSLVINYDLPTNKENYIH 347
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/273 (16%), Positives = 102/273 (37%), Gaps = 29/273 (11%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGK 292
Y +P Q LP ++ + + A +G GKT ++ L + + +
Sbjct 39 YGYGFEEPSAIQQRAILPIVEEHDVLAQAQSGTGKTGTFSIAALQ-----RIDSSIKAPQ 93
Query 293 VVFFANQIPVYEQ-QKSVFSK--YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
+ A + Q QK V + + + + G + + + +++ I++ TP
Sbjct 94 ALILAPTRELALQIQKVVIALAFHMDVKVHACIGGTSFVEDT----EGLKDAQIVVGTPG 149
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVI 406
+ +N+++ + I DE + ++ + +++ LP QV+
Sbjct 150 RVSDNIQRHRF-KTDNIKMFILDEA---------DEMLSSGFREQIYQIFTMLPPTTQVV 199
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
L+A++ + T + + ++ D + +K +E+ YK +S
Sbjct 200 LLSATLPGDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDS- 258
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
IS I R E L +++ + +S I
Sbjct 259 ISVTQAVIFCNTRRKVEELTQKLTESNFTVSSI 291
>sp|A4WG30|RHLB_ENT38 ATP-dependent RNA helicase RhlB OS=Enterobacter
sp. (strain 638) OX=399742 GN=rhlB PE=3 SV=1
Length=421
Score = 84.5 bits (207), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + IL+ F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILEDF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSAFHYLLSNPAMADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q9Y6V7|DDX49_HUMAN Probable ATP-dependent RNA helicase DDX49
OS=Homo sapiens OX=9606 GN=DDX49 PE=1 SV=1
Length=483
Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/217 (19%), Positives = 76/217 (35%), Gaps = 22/217 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++Q + + I+F T L + K SF +
Sbjct 231 KDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLR---KFSFPTVAL--------- 278
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE---YVGNVIKMIQ 726
++ M + L FK+S + ILIAT VA G+DI +VI + I +
Sbjct 279 HSMMKQKERFAALAKFKSS-IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVG 337
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN---DSILRLQTWDEAVFREKILHI 783
R +G L+T + K+K+ + LQ + + I
Sbjct 338 RTARAGRQGQAITLVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEI 397
Query 784 QTHEKFIRDSQE---KPKPVPDKENKKLLCRKCKALA 817
+ + +E + + + + ++ L ++ LA
Sbjct 398 KLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELA 434
Score = 76.4 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 50/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P QL ++G++ + CA TG GKT +L L + P G +
Sbjct 24 QPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIF--CLVLTPTRE 81
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q F + G + I G ++ ++I TP L ++L+
Sbjct 82 LAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTF 141
Query 362 SLSIFTLMIFDEC 374
S+ ++ DE
Sbjct 142 SIKKIRFLVMDEA 154
>sp|A6SCT6|DBP3_BOTFB ATP-dependent RNA helicase dbp3 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp3 PE=3 SV=1
Length=592
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 18/151 (12%)
Query 612 EDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
E L ++Y + ++F + ++++I G
Sbjct 411 EYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQK------------GFRVAGI 458
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQ 726
+ ++ + L+AFK SG+ +L+AT VA G+DI LVI + + I
Sbjct 459 HGDLSQEQRTRSLEAFK-SGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIG 517
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR G L T + IN+ K
Sbjct 518 RTGRAGKDGLAITLFTEHDKAQSGALINVLK 548
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G++ I A TG GKT + C + + + V + + Q K
Sbjct 221 LAGRDVIGVAETGSGKTMAFAVPCIN--------KGPRAVVVSPTRELAMQSYEQIVKLA 272
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + G ++ + + ++ DI++ TP L N+L LS ++ DE
Sbjct 273 KASGLECVCVYGGVPKDEQI-RALKTADIVVATPGRL-NDLINQGCADLSKARYVVLDEA 330
>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DRS1 PE=3
SV=2
Length=705
Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/202 (14%), Positives = 70/202 (35%), Gaps = 20/202 (10%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L + L + ++FV + + L+ + L G + +
Sbjct 433 ALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLG------------LLGMKVSELHGS 480
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRG 729
+T + + F+ S +LI T +A G+DI + +VI ++ + +
Sbjct 481 LTQEQRLQSVKDFR-SLAVPVLICTDLAARGLDIPKIEIVINFDMPKTHEIYLHRVGRTA 539
Query 730 RGRARGSKCFLLTSNAGV--IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH- 786
R G + + I K+ I +E+ ++ R W + I+ +
Sbjct 540 RAGREGRSITFVGESNQDRSIVKDAIKSLEEQKNGKAVSRTVDWKKVEELNSIVESKKDT 599
Query 787 -EKFIRDSQEKPKPVPDKENKK 807
++ + + + + + + +
Sbjct 600 IDEVLEEEKSAKEILQAEMQLE 621
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSK 312
AM GK+ + A TG GKT L+ L P +V+ + Q V K
Sbjct 232 AMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKK 291
Query 313 YFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G++ EQ +++ DI++ TP L+++++ S+ +++
Sbjct 292 LGQFVANLNFGLAVGGLNLRQQEQQLKSRPDIVVATPGRLIDHIRNSPSFSIENLEVLVM 351
Query 372 DEC 374
DE
Sbjct 352 DEA 354
>sp|P0A2P0|RHLB_SALTY ATP-dependent RNA helicase RhlB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287
GN=rhlB PE=3 SV=2
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|P0A2P1|RHLB_SALTI ATP-dependent RNA helicase RhlB OS=Salmonella
typhi OX=90370 GN=rhlB PE=3 SV=2
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B4TNT3|RHLB_SALSV ATP-dependent RNA helicase RhlB OS=Salmonella
schwarzengrund (strain CVM19633) OX=439843 GN=rhlB PE=3
SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5BIS9|RHLB_SALPK ATP-dependent RNA helicase RhlB OS=Salmonella
paratyphi A (strain AKU_12601) OX=554290 GN=rhlB PE=3
SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|C0Q2V9|RHLB_SALPC ATP-dependent RNA helicase RhlB OS=Salmonella
paratyphi C (strain RKS4594) OX=476213 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A9MXF3|RHLB_SALPB ATP-dependent RNA helicase RhlB OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B4SZ26|RHLB_SALNS ATP-dependent RNA helicase RhlB OS=Salmonella
newport (strain SL254) OX=423368 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B4TB13|RHLB_SALHS ATP-dependent RNA helicase RhlB OS=Salmonella
heidelberg (strain SL476) OX=454169 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5RFS3|RHLB_SALG2 ATP-dependent RNA helicase RhlB OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=rhlB
PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5QVH2|RHLB_SALEP ATP-dependent RNA helicase RhlB OS=Salmonella
enteritidis PT4 (strain P125109) OX=550537 GN=rhlB PE=3
SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5FN74|RHLB_SALDC ATP-dependent RNA helicase RhlB OS=Salmonella
dublin (strain CT_02021853) OX=439851 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 59/164 (36%), Gaps = 11/164 (7%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNY-----QLELALPAMKGKNTIICAPTGCGKTFVSL 275
+L+E + + + K R Y Q + G++ A TG GKT L
Sbjct 5 HLTEQKFSDFALHPQVVEALEKKRFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFL 64
Query 276 LICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAE 330
H+L P KV + A + Q + + G ++ G
Sbjct 65 TSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGY 124
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++ + DI+I T L++ K+ I L +++ DE
Sbjct 125 DKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|Q57HT6|RHLB_SALCH ATP-dependent RNA helicase RhlB OS=Salmonella
choleraesuis (strain SC-B67) OX=321314 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A9MJ29|RHLB_SALAR ATP-dependent RNA helicase RhlB OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) OX=41514
GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQVTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|B5EZ40|RHLB_SALA4 ATP-dependent RNA helicase RhlB OS=Salmonella
agona (strain SL483) OX=454166 GN=rhlB PE=3 SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A7MQI2|RHLB_CROS8 ATP-dependent RNA helicase RhlB OS=Cronobacter
sakazakii (strain ATCC BAA-894) OX=290339 GN=rhlB PE=3
SV=1
Length=421
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 44/114 (39%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P Q + + + A + Q S E G +
Sbjct 55 TGTGKTMAFLTSTFHYLLSHPAAENRQVNQPRALIMAPTRELAVQIHSDAEPLAEATGIK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ + L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYTKQNHVN-LGAIQVVVLDEA 167
>sp|Q8L4E9|RH36_ORYSJ DEAD-box ATP-dependent RNA helicase 36 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0633500 PE=3
SV=1
Length=501
Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 24/203 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
F L + + + I+FV T L +E G + ++
Sbjct 309 LFYLLSKMNEDNIRSVIVFVSTCRTCQYLDFLLEE------------LGHPAVSLHSHKP 356
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ L FK+S +L+AT VA G+DI +LVI Y+ I GR RA
Sbjct 357 QSRRLAALHNFKSS-KVPVLLATDVASRGLDIQTVDLVINYDVPRYPRDYIHRVGRTARA 415
Query 734 RGSKC---FLLTSNAGVIEKEQINMYKEKM--MNDSILRLQTWDEAVFREKILHI----- 783
F+ T + E ++ +++ + + + VF+ + L
Sbjct 416 TRGGLSISFITTQRDIRLLHEIEDVVGKQLGAYDGEMRDVNKDATKVFKARRLANMKMAD 475
Query 784 QTHEKFIRDSQEKPKPVPDKENK 806
+ HE ++ +E+ K +++ K
Sbjct 476 EGHEDKVQARKEQKKRAQERKRK 498
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/132 (20%), Positives = 43/132 (33%), Gaps = 8/132 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q A++G++ + A TG GKT L H L + P G A + Q
Sbjct 104 QRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALA--LAPTRELAAQL 161
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F G R G + + +++ TP + + P L+
Sbjct 162 AEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARRPHVVVATPGRIATLI--NDDPDLAKV 219
Query 367 ----TLMIFDEC 374
++ DE
Sbjct 220 FARTKFLVLDEA 231
>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41
OS=Mus musculus OX=10090 GN=Ddx41 PE=1 SV=2
Length=622
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/163 (20%), Positives = 65/163 (40%), Gaps = 19/163 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K+ L LQ+ ++F + +A VDA+ ++ +L G
Sbjct 416 KEEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYL------------LLKGVE 458
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ G + ++AF+ G ++L+AT VA +G+D VI Y+ + +
Sbjct 459 AVAIHGGKDQEERTKAIEAFR-EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV 517
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
GR R + T+ E + M + ++ ++ ++
Sbjct 518 HRIGR-TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV 559
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/170 (19%), Positives = 60/170 (35%), Gaps = 13/170 (8%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
P ++ E P + + P Q++ + G++ I A TG GKT V L
Sbjct 178 PPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Query 277 -ICEHHLKK-----FPQGQKGKVVFFANQIPVYEQQKSVFS------KYFERHGYRVTGI 324
+ L++ F + + + + Q + + R
Sbjct 238 PVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + +E I +++ TP L++ L+K + SL I + DE
Sbjct 298 IGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMV-SLDICRYLALDEA 346
>sp|Q8CRP6|CSHA_STAES DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI
1200) OX=176280 GN=cshA PE=3 SV=1
Length=509
Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/340 (16%), Positives = 129/340 (38%), Gaps = 35/340 (10%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ Q + FG E+ I +++
Sbjct 74 ILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL--KDFFSNVRAAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + + + + +A + Q+L
Sbjct 134 LNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + + ++ + + +P++++ I++E + T + I+F +T+
Sbjct 194 QQFMKAPKIIK--TMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + G + +T + +L FK +IL+AT
Sbjct 252 RVDELTSALLSK------------GYKAEGLHGDITQAKRLEVLKKFKND-QIDILVATD 298
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
VA G+DI+ + V ++ + GR R K + + IE + I ++
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGR-TGRAGKEGIAVTFVNPIEMDYIRQIED 357
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
+ V + + I+ + + +P+
Sbjct 358 VNNRRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPR 397
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E V +P Q + A++G + + A TG GKT +
Sbjct 2 QNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K Q + + A + Q ++ + +V + G ++ +
Sbjct 61 --IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKR 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTQGIHTLILDEA 152
>sp|Q6LLL5|RHLB_PHOPR ATP-dependent RNA helicase RhlB OS=Photobacterium
profundum (strain SS9) OX=298386 GN=rhlB PE=3 SV=1
Length=437
Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + + ++ ++ PSN+ K+ L +++EE+
Sbjct 201 LSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQ-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+L G + + IL+ F
Sbjct 258 --RAIIFANTKHRCEDI----WGHLAADNHRVGLLNG--------DVPQKKRVRILEQF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I Q V Y+ + + I GR GS
Sbjct 303 TQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRAGESGSSISFACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 47/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSV 309
+ G++ A TG GKT L ++L P + K + A + Q +
Sbjct 44 LTGQDIAGQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQIYND 103
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G A + E DI+I T +++ K+ I L+ ++
Sbjct 104 AAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYKQRVID-LASIQVV 162
Query 370 IFDEC 374
+ DE
Sbjct 163 VLDEA 167
>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41
OS=Homo sapiens OX=9606 GN=DDX41 PE=1 SV=2
Length=622
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/163 (20%), Positives = 65/163 (40%), Gaps = 19/163 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K+ L LQ+ ++F + +A VDA+ ++ +L G
Sbjct 416 KEEAKMVYLLECLQK-----TPPPVLIFAEKKADVDAIHEYL------------LLKGVE 458
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ G + ++AF+ G ++L+AT VA +G+D VI Y+ + +
Sbjct 459 AVAIHGGKDQEERTKAIEAFR-EGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYV 517
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
GR R + T+ E + M + ++ ++ ++
Sbjct 518 HRIGR-TGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKV 559
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 32/170 (19%), Positives = 60/170 (35%), Gaps = 13/170 (8%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
P ++ E P + + P Q++ + G++ I A TG GKT V L
Sbjct 178 PPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Query 277 -ICEHHLKK-----FPQGQKGKVVFFANQIPVYEQQKSVFS------KYFERHGYRVTGI 324
+ L++ F + + + + Q + + R
Sbjct 238 PVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALC 297
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + +E I +++ TP L++ L+K + SL I + DE
Sbjct 298 IGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMV-SLDICRYLALDEA 346
>sp|Q6FS54|DBP3_CANGA ATP-dependent RNA helicase DBP3 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP3 PE=3 SV=1
Length=540
Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 62/179 (35%), Gaps = 17/179 (9%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-ITILFVKTRALV 640
++ + R E + + + + K L +L++ + ++F +
Sbjct 330 VKVSIGNRDELSANKRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVLIFALYKKEA 389
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
++ + N G + ++ + L+ FK SG N+L+AT VA
Sbjct 390 SRVERNLNYN------------GYKVAAIHGDLSQQQRTQALNEFK-SGKSNLLLATDVA 436
Query 701 DEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
G+DI VI + + I GR G+ L T + +N+
Sbjct 437 ARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVL 495
Score = 75.6 bits (184), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/240 (19%), Positives = 91/240 (38%), Gaps = 23/240 (10%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+ GK+ I A TG GKTF + + L + + KV+ + + Q
Sbjct 163 LSGKDVIGVAETGSGKTFAFGVPAINNLLTSSSKPKGIKVLVISPTRELASQIYDNLVLL 222
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
++ G + G ++ QI ++N +++ TP L++ +++G++ LS M+ DE
Sbjct 223 TQKVGIDCCVVYGGVPKDDQRRQIAKSN-VVVATPGRLLDLIEEGSVD-LSPVDYMVLDE 280
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS 433
M G + ++IG T S T + +L ++
Sbjct 281 ADR----------MLE------KGFEEDIKRIIGQTKSKDRQTLMFTATWPKEVRELAST 324
Query 434 LDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDL 493
+ N +EL ++ + VE + + L++ +S K+ K L
Sbjct 325 FMKEPVKVSIGNRDELSAN----KRITQIVEVVDPRSKERKLLDLLKKYQSGPKKNDKVL 380
>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B
OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0697200 PE=3
SV=1
Length=619
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 15/159 (9%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K E L E P ++F + +A VD ++ ++ +L G
Sbjct 408 KEEARIIYLLECLQKTPPP-VLVFCEHKADVDYIQEFL------------LLKGVEAVAI 454
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ G +K +FKAS + ++L+AT VA +G+DI VI Y+ + + G
Sbjct 455 HGGKDDEERKDAFKSFKAS-EKDVLVATDVASKGLDIPDIQHVINYDMPAEIENYVHRIG 513
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
R R K + T+ + E + ++++ +S RL
Sbjct 514 RTGRR-GKTGVATTFINKNQTETTLLDLKQLLIESKQRL 551
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/170 (19%), Positives = 57/170 (34%), Gaps = 13/170 (8%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
P ++ + P + KP Q++ A+ G++ I A TG GKT V +L
Sbjct 170 PPSRSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVL 229
Query 277 -ICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKSVFSKYFER------HGYRVTGI 324
+ L++ G+ + + Q V + R
Sbjct 230 PLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLC 289
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G +E + + I++ TP L + L K + L + DE
Sbjct 290 IGGVDMRTQMEVVKKGVHIVVATPGRLKDLLSKKKMN-LDNCRYLTLDEA 338
>sp|P0CR02|DBP8_CRYNJ ATP-dependent RNA helicase DBP8 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP8 PE=3 SV=1
Length=619
Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 63/409 (15%), Positives = 137/409 (33%), Gaps = 51/409 (12%)
Query 406 IGLT-ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+GLT A++ G + + +L A ++AT + L P K R V
Sbjct 247 LGLTTATIVGG-----MDMMKQAQELEARPHI-IVATPGRLCDLLRSGGVGPGKLSR-VR 299
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
+ + D+ ++ S A + + + T + I+ +
Sbjct 300 TLVLDEADRMLTP------SFAPELAYLFSQIPAKRQTCLFTATVSEAIMELANKEPPAG 353
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
+ R+ ++ +KY L I R L L++ ++ A + ++
Sbjct 354 -KQRPFVYRVASDTLTVSNLKQKY---LFIPSQIRDPYLLYILQNPLEDIDVALRVDPKK 409
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
+ E L + R +EE T++F + A L
Sbjct 410 AKAREREAALGKKGKKPRQA--------------KEEEDAPSVPSTVIFTQRCATAHLLH 455
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ ++ +T P + L F+A + +L+ T V G+
Sbjct 456 LLLNS------------LDIPSVPLHSHLTQPQRLLSLARFRAH-EVPVLVTTDVGSRGL 502
Query 705 DIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEK---EQINMYKE 758
DI + +VI ++ + + + R G ++T + K +++N+ E
Sbjct 503 DIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVAVTIITERDTELVKIIEDEVNVRLE 562
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
++ D L+ ++ ++ ++ H+ + Q K K K+
Sbjct 563 ELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGERQATNKAKQIKRMKR 611
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/183 (22%), Positives = 64/183 (35%), Gaps = 16/183 (9%)
Query 206 TSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------------KPRNYQLELALP 253
T D+ + P+ L+ S P ++V+ +L KP Q P
Sbjct 126 TKDMTPKPRSKPQPNGLASASKPSADVTFESLGLSHPLITALASINIKKPTEIQAACVEP 185
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+ G++ I A TG GKT L + + P G V + Q F
Sbjct 186 ILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWA--VVLTPTRELAYQLSEQFLVI 243
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI--PSLSIFTLMIF 371
+ G I G +++ II+ TP L + L+ G + LS ++
Sbjct 244 GKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVL 303
Query 372 DEC 374
DE
Sbjct 304 DEA 306
>sp|A4QYM6|DRS1_PYRO7 ATP-dependent RNA helicase DRS1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DRS1 PE=3 SV=1
Length=790
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/290 (18%), Positives = 104/290 (36%), Gaps = 29/290 (10%)
Query 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL--E 598
+ L + L S + A + N+ G ++ + + ++ + L E
Sbjct 418 FADELNEILTTLPKSRQTMLFSAT--MTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQE 475
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
V P E ++ L ++ + Y I+F + + + I G
Sbjct 476 FVRLRPGREEKRMGYLVYLCKNLYTE----RVIIFFRQKKIAHH-ARIIFG--------- 521
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
L G + M+ + ++AF+ G + L+AT +A G+DI + VI YE
Sbjct 522 --LLGLSCAELHGSMSQIQRIQSVEAFR-DGKVSFLLATDLASRGLDIKGVDTVINYEAP 578
Query 719 GNVIKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
++ + G R G+ L + K + K + S + D
Sbjct 579 QSLEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADS 638
Query 776 FREKILHIQTH-EKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR 824
++ KI ++ E +R+ +E+ + RK + + Y D++
Sbjct 639 WQAKIDELEDEVEAVMREEKEEKVLAQA----DMEMRKGENMIRYEDDIK 684
Score = 76.0 bits (185), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/134 (22%), Positives = 55/134 (41%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
KP Q + A+ GK+ + A TG GKT ++ L P+ +VV A
Sbjct 277 KPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVVILAPTR 336
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K + G + V ++ D+II TP +++++
Sbjct 337 ELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELRLRPDVIIATPGRFIDHMRNSAS 396
Query 361 PSLSIFTLMIFDEC 374
++ +++ DE
Sbjct 397 FAVDTVEILVLDEA 410
>sp|A5DQF1|RRP3_PICGU ATP-dependent rRNA helicase RRP3 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RRP3 PE=3
SV=2
Length=475
Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 52/144 (36%), Gaps = 30/144 (21%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKT-----RALVDALKNWIEGNPKLSFLKPGILTGR 664
K L +L E + I+F +T R+ L + G
Sbjct 290 KNTFLIHLLNEFMGKS----IIVFTRTCAHTQRST--LLARIL---------------GF 328
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ +T + L+ FK SG NILIAT VA G+DI ++VI Y+ +
Sbjct 329 SAVPLHGQLTQSQRLGSLNKFK-SGKANILIATDVAARGLDIPSVDVVINYDIPTDSKAY 387
Query 725 IQTRG---RGRARGSKCFLLTSNA 745
I G R G L+T
Sbjct 388 IHRVGRTARAGKSGKSISLVTQYD 411
Score = 66.7 bits (161), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 2/121 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A++GK+ I A TG GKT + L + + + A + Q K F
Sbjct 98 ALEGKDIIGLAQTGSGKTAAFAIPILQSL--WEAQRPYYALVLAPTRELAYQIKETFDAL 155
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G R I G ++ I++ TP ++++L+ SL ++ DE
Sbjct 156 GSGMGVRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLENTKGFSLKSLQYLVMDE 215
Query 374 C 374
Sbjct 216 A 216
>sp|Q6FQQ6|IF4A_CANGA ATP-dependent RNA helicase eIF4A OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=TIF1 PE=3 SV=1
Length=396
Score = 83.7 bits (205), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
V A + L ++ E L+ ++ + E K L + Y T ++
Sbjct 211 EVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKY----DCLTDLYDSISVTQAVI 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + + ++ + + + I+ F+ SG
Sbjct 267 FCNTRRKVEELTQRLTAD--------NFTV----SSIYSDLPQQERDTIMKEFR-SGSSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 314 ILISTDLLARGIDVQQVSLVINYDLPTNKENYIH 347
Score = 54.4 bits (129), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/271 (18%), Positives = 103/271 (38%), Gaps = 29/271 (11%)
Query 238 YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVV 294
Y KP Q +P ++G + + A +G GKT ++ L + P + + +
Sbjct 41 YGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQ-----RIDPAIKAPQAL 95
Query 295 FFANQIPVYEQ-QKSVFSK--YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
A + Q QK V + + + + G + + + + + I++ TP +
Sbjct 96 MLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVED----AEGLRDAQIVVGTPGRV 151
Query 352 VNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGL 408
+N+++ + + I DE + ++ +++ LP QV+ L
Sbjct 152 FDNIQRRKF-KVDNIKMFILDEA---------DEMLSTGFKEQIYQIFTMLPPTTQVVLL 201
Query 409 TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
+A++ + T + + ++ D + +K +E+ +K +S IS
Sbjct 202 SATMPRDVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKYDCLTDLYDS-IS 260
Query 469 DKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
I R E L +R+ D +S I
Sbjct 261 VTQAVIFCNTRRKVEELTQRLTADNFTVSSI 291
>sp|Q9QY16|DDX25_RAT ATP-dependent RNA helicase DDX25 OS=Rattus
norvegicus OX=10116 GN=Ddx25 PE=1 SV=2
Length=483
Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 26/170 (15%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
+ ++ E L + N K + LC I Y I+F +TR
Sbjct 296 DPNVIKLRKEELTLNNIRQYYVLCENRKDKYQALCNI----YGGITIGQAIIFCQTRRNA 351
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L + + G + + +T+ + I+ F+ G +LI T+V
Sbjct 352 KWLTVEMMQD------------GHQVSLLSGELTVEQRASIIQRFR-DGKEKVLITTNVC 398
Query 701 DEGIDIAQCNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFLL 741
GID+ Q +V+ ++ + I GR +G ++
Sbjct 399 ARGIDVKQVTIVVNFDLPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI 448
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 51/138 (37%), Gaps = 11/138 (8%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH---LKKFPQGQKGKVVFF 296
P K + L + L +N I + +G GKT +L + L+ FPQ +
Sbjct 120 PSKIQEMALPMMLAH-PPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQ-----CLCL 173
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
A + Q V + + V + +P V I+I TP +++
Sbjct 174 APTYELALQTGRVVER-MGKFCVDVEVMYAIRGNRIPRGTDVTK-QIVIGTPGTVLDWCF 231
Query 357 KGTIPSLSIFTLMIFDEC 374
K + L+ + + DE
Sbjct 232 KRKLIDLTKIRVFVLDEA 249
>sp|Q1DZK8|DBP3_COCIM ATP-dependent RNA helicase DBP3 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP3 PE=3 SV=2
Length=515
Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 64/183 (35%), Gaps = 25/183 (14%)
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-ITILFVKTR 637
D + +R ++ ++ L+ K L +L+ ++F +
Sbjct 309 GDSSDIRANKRIKQMVEVLQPY--------EKDSRLLELLRRYQDGGKNNHRILVFCLYK 360
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
++ +I G + M+ + L+AFK SG ++L+AT
Sbjct 361 KEAMRVERFIGSK------------GFKVAGIHGDMSQTERFRSLEAFK-SGSISLLVAT 407
Query 698 SVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 754
VA G+DI LV+ + + I GR A G L T + IN
Sbjct 408 DVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERDKALSGPLIN 467
Query 755 MYK 757
+ +
Sbjct 468 VLR 470
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 10/182 (5%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK----PRNYQLELALPAM 255
+++ + ++ I I + E S +LY P + P Q A
Sbjct 76 IDEYLSSNSIHIADPSTDPSLRPITSFSFLPE-SSNDLYLPLEKFSSPTPIQAVSWPLAF 134
Query 256 KGKNTIICAPTGCGKTFVSLLICEH---HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
G++ I A TG GKT L C L K + + Q +
Sbjct 135 AGRDLIGVAETGSGKTLAFGLPCLRRVLELNNSETSCKPCALIITPTRELAVQIYDQLLR 194
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ + I G + ++ +I N ++I TP L + TI LS ++ D
Sbjct 195 FSSAVDVGIACIYGGSPKDHQRREI-RNASVVIATPGRLKDFQADQTIN-LSGVKYLVLD 252
Query 373 EC 374
E
Sbjct 253 EA 254
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0708600 PE=2
SV=1
Length=736
Score = 85.2 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 20/147 (14%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+ E+ K+ L IL + I+F T+ DA ++ G
Sbjct 560 TKESEKMSRLQKILTDLGDKP----AIVFCNTKKSADARAKDLDK------------AGF 603
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NV 721
T + G + ++ LD F+ +L+AT VA GIDI VI YE
Sbjct 604 RVTTLHGGKSQEQRETSLDGFRNR-RFTVLVATDVAGRGIDIPDVAHVINYEMPSSIDTY 662
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVI 748
I GR +G LT I
Sbjct 663 THRIGRTGRAGKKGLATSFLTLENTDI 689
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/203 (18%), Positives = 81/203 (40%), Gaps = 21/203 (10%)
Query 188 VEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------ 241
V++ +++ ++ D +IF ++ S+ P + S++ L +
Sbjct 277 VDRHWTQKSLDEMTER----DWRIFREDFNISYKGSKVPRPMRKWSESKLGTELLRAVEK 332
Query 242 ----KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKG 291
+P Q+ ++ ++ I A TG GKT +L ++ + P + +
Sbjct 333 AGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGP 392
Query 292 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
V A + +Q + K+ G +V I G + +I + +++I TP L
Sbjct 393 YAVVMAPTRELAQQIEEETVKFATYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRL 452
Query 352 VNNLKKGTIPSLSIFTLMIFDEC 374
++ L++ L+ ++ DE
Sbjct 453 LDCLERRY-AVLNQCNYVVLDEA 474
>sp|A1C5V3|DBP3_ASPCL ATP-dependent RNA helicase dbp3 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp3 PE=3 SV=1
Length=503
Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 56/161 (35%), Gaps = 17/161 (11%)
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPE-TITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + + K L +L E ++F + ++ + +F G
Sbjct 311 TVEVVQSHDKEYRLVQLLSENQRGAAALDKVLVFCLYKKEAMRVERLLRNK---NFKVAG 367
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
I + + + LDAFK SG +L+AT VA G+DI LVI +
Sbjct 368 I---------HGDLNQHERFKSLDAFK-SGAATVLVATDVAARGLDIPSVKLVINVTFPL 417
Query 720 N---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ I GR A G L T IN+ K
Sbjct 418 TVEDYVHRIGRTGRAGAEGRAITLFTETDKAQSGALINVLK 458
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/321 (16%), Positives = 106/321 (33%), Gaps = 22/321 (7%)
Query 161 RSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
+ +KE +K ++ + + D+ +++ + T I++ D
Sbjct 23 KPEKETMESPAADVTVDFGSKSDATYVQSQVLSDMPQSEIDQFLATHSIKVTDTSDAPAV 82
Query 221 ----NLSENSCPPSEVSDT--NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
+ S S++ + + SP ++ L G++ I A TG GKT
Sbjct 83 RPIISFSHLPSCDSKLYSSLSSFASPTPIQSATWPLLFA---GRDVIGIAETGSGKTLAF 139
Query 275 LLICEHHLKK-----FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 329
L C + F + V + + Q SKY G + T I G
Sbjct 140 GLPCLKKILDSGKIKFKNARPA-AVIISPTRELAMQIYDQISKYAGSIGIKATCIFGGVK 198
Query 330 ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 389
++ E +++ I++ TP L +L+ L ++ DE + + + +
Sbjct 199 KDEQRE-ALKSAAIVVATPGRL-KDLQNDGSVDLGKVKYLVLDEADRMLDKG-FEQDIKD 255
Query 390 YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEEL 449
+ + TA+ + + D S +++
Sbjct 256 IISSTPDSKRQTVM----FTATWPPSVRDLAATFMTSAVTVTIGGDPSADPRANTRIKQT 311
Query 450 EQVVYKPQKFFRKVESRISDK 470
+VV K +R V+ ++
Sbjct 312 VEVVQSHDKEYRLVQLLSENQ 332
>sp|P0CR03|DBP8_CRYNB ATP-dependent RNA helicase DBP8 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP8 PE=3 SV=1
Length=619
Score = 84.8 bits (208), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/409 (15%), Positives = 137/409 (33%), Gaps = 51/409 (12%)
Query 406 IGLT-ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+GLT A++ G + + +L A ++AT + L P K R V
Sbjct 247 LGLTTATIVGG-----MDMMKQAQELEARPHI-IVATPGRLCDLLRSGGVGPGKLSR-VR 299
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
+ + D+ ++ S A + + + T + I+ +
Sbjct 300 TLVLDEADRMLTP------SFAPELAYLFSQIPAKRQTCLFTATVSEAIMELANKEPPAG 353
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
+ R+ ++ +KY L I R L L++ ++ A + ++
Sbjct 354 -KQRPFVYRVASDTLTVSNLKQKY---LFIPSQIRDPYLLYILQNPLEDIDVALRVDPKK 409
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
+ E L + + +EE T++F + A L
Sbjct 410 AKAREREAALGKKGKKPKQA--------------KEEEDAPSVPSTVIFTQRCATAHLLH 455
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+ ++ +T P + L F+A + +L+ T V G+
Sbjct 456 LLLNS------------LDIPSVPLHSHLTQPQRLLSLARFRAH-EVPVLVTTDVGSRGL 502
Query 705 DIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEK---EQINMYKE 758
DI + +VI ++ + + + R G ++T + K +++N+ E
Sbjct 503 DIPEVAMVINWDCPRRSDDYVHRVGRTARAGRGGVAVTIITERDTELVKIIEDEVNVRLE 562
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
++ D L+ ++ ++ ++ H+ + Q K K K+
Sbjct 563 ELKLDEDKVLEGLNKVSLARRMATMEMHDSGFGERQATNKAKQIKRMKR 611
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/183 (22%), Positives = 63/183 (34%), Gaps = 16/183 (9%)
Query 206 TSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------------KPRNYQLELALP 253
T D+ + P+ L S P ++V+ +L KP Q P
Sbjct 126 TKDMTPKPRSKPQPNGLPSASKPSADVTFESLGLSRPLITALASINIKKPTEIQAACVEP 185
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+ G++ I A TG GKT L + + P G V + Q F
Sbjct 186 ILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWA--VVLTPTRELAYQLSEQFLVI 243
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI--PSLSIFTLMIF 371
+ G I G +++ II+ TP L + L+ G + LS ++
Sbjct 244 GKPLGLTTATIVGGMDMMKQAQELEARPHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVL 303
Query 372 DEC 374
DE
Sbjct 304 DEA 306
>sp|A8ACT3|RHLB_CITK8 ATP-dependent RNA helicase RhlB OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
OX=290338 GN=rhlB PE=3 SV=1
Length=421
Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 21/181 (12%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L + + E + ++ ++ PSNE K+ L +++EE+
Sbjct 201 LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNE-EKMRLLQTLIEEEWPD-- 257
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F T+ + + G+ + G+LTG + + ILD F
Sbjct 258 --RAIVFANTKHRCEDI----WGHLAADGHRVGLLTG--------DVAQKKRLRILDEF- 302
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTS 743
GD +IL+AT VA G+ I V Y+ + + I GR A G L
Sbjct 303 TRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 362
Query 744 N 744
Sbjct 363 E 363
Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 43/114 (38%), Gaps = 6/114 (5%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L H+L P KV + A + Q + + G +
Sbjct 55 TGTGKTMAFLTSSFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLK 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + ++ + DI+I T L++ K+ I L +++ DE
Sbjct 115 LGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHIN-LGAIQVVVLDEA 167
>sp|A6QXC1|DBP3_AJECN ATP-dependent RNA helicase DBP3 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP3 PE=3
SV=1
Length=487
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/183 (21%), Positives = 67/183 (37%), Gaps = 20/183 (11%)
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P N+ +L L Q + N ++F + ++ +I
Sbjct 299 VKPENKESRLLSLLN--QYQRGRNAMDKVLVFCLYKKEATRIERFIRSK----------- 345
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G + M + LDAFK SG +L+AT VA G+DI LV+ + V
Sbjct 346 -GFKVAGIHGDMNQTERFNSLDAFK-SGSVPVLVATDVAARGLDIPAVKLVLNVTFPLTV 403
Query 722 IKMIQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYK--EKMMNDSILRLQTWDEAVF 776
+ GR GS + T N + +N+ K + + +++L+ T +
Sbjct 404 EDYVHRIGRTGRAGSDGLAITMFTENDKALSGGLVNILKGANQDIPEALLKFGTTVKKKQ 463
Query 777 REK 779
+
Sbjct 464 HDS 466
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/194 (19%), Positives = 70/194 (36%), Gaps = 18/194 (9%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPEC-QNLSENSCPPSEVSDTNLYSPFK----PR 244
+ E +D ++++ IQI E + ++ S PS+ LY P + P
Sbjct 40 DAVPQSEIDDF---LKSNTIQISDPSIKETLRPITAFSYLPSD--SNQLYGPLEHFSKPT 94
Query 245 NYQLELALPAMK-GKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKV--VFFANQI 300
Q + P + G++ I A TG GKT + L+ ++ V
Sbjct 95 PIQ-SVTWPYLFAGRDVIGVAETGSGKTLAFGVPCIRKVLEINASHSSFRISAVIITPTR 153
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q K+ GA+ ++ + ++ +I+ TP L + ++
Sbjct 154 ELAMQIHDQLVKFTPNGVGLACIYGGASKDDQR--RALKKASVIVATPGRLKDFHSDESL 211
Query 361 PSLSIFTLMIFDEC 374
L ++ DE
Sbjct 212 N-LKKVKYLVLDEA 224
>sp|Q55BR9|DDX49_DICDI Probable ATP-dependent RNA helicase ddx49
OS=Dictyostelium discoideum OX=44689 GN=ddx49 PE=3 SV=1
Length=508
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/202 (22%), Positives = 75/202 (37%), Gaps = 23/202 (11%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L +IL++ + I+FV V+A+K + + ++
Sbjct 235 YLVYILKKH----EGSSAIVFVNNCYAVEAVKGMLNK------------LDIPSVSLHSF 278
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
+ ++ L FK SG +L+AT VA G+DI +VI Y+ + I GR
Sbjct 279 LDQKSRLAALKTFK-SGKVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTA 337
Query 732 R-ARGSKCFLLTSNAGVI----EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
R R + + V +E I E D + EA KI+ I
Sbjct 338 RFGRSGRAISFITPHDVSLIKGIEEIIKKQLELYKTDDDEVFRHLKEASTARKIVEIHLD 397
Query 787 EKFIRDSQEKPKPVPDKENKKL 808
E Q++ + ++ K+L
Sbjct 398 EIEFGVKQKERRTERNELQKQL 419
Score = 66.3 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/132 (22%), Positives = 47/132 (36%), Gaps = 2/132 (2%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P N Q +KG++ I A TG GKT + + L + P G V +
Sbjct 27 PSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFA--VILTPTREL 84
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q F+ + + G + + II+ TP L ++L G +
Sbjct 85 AVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASHLNNGLKIA 144
Query 363 LSIFTLMIFDEC 374
L ++ DE
Sbjct 145 LKFCKFLVLDEA 156
>sp|Q9QY15|DDX25_MOUSE ATP-dependent RNA helicase DDX25 OS=Mus
musculus OX=10090 GN=Ddx25 PE=1 SV=2
Length=484
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/274 (18%), Positives = 91/274 (33%), Gaps = 37/274 (14%)
Query 488 RICKDLENLSQIQ--NREFGTQKYEQWIV----TVQKACMVFQMPDKDEESRICKALFLY 541
+ C D+E + I+ GT+ +Q I+ TV C ++ D +
Sbjct 193 KFCVDVEVMYAIRGNRIPRGTEVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADV 252
Query 542 TSHLRKYNDALIISEHA-----RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
+ ++D I + A +M +D + ++ E L
Sbjct 253 MIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNN 312
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
+ N K + LC I Y I+F +TR L + +
Sbjct 313 IRQYYVLCENRKGKYQALCNI----YGGITIGQAIIFCQTRRNAKWLTVEMMQD------ 362
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
G + + +T+ + I+ F+ G +LI T+V GID+ Q +V+ ++
Sbjct 363 ------GHQVSLLSGELTVEQRASIIQRFR-DGKEKVLITTNVCARGIDVKQVTIVVNFD 415
Query 717 YV---------GNVIKMIQTRGRGRARGSKCFLL 741
+ I GR +G ++
Sbjct 416 LPVNQSEEPDYETYLHRIGRTGRFGKKGLAFNMI 449
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 51/138 (37%), Gaps = 11/138 (8%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFF 296
P K + L + L +N I + +G GKT +L + L+ FPQ +
Sbjct 121 PSKIQEMALPMMLAH-PPQNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ-----CLCL 174
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
A + Q V + + V + +P V III TP +++
Sbjct 175 APTYELALQTGRVVER-MGKFCVDVEVMYAIRGNRIPRGTEVTK-QIIIGTPGTVLDWCF 232
Query 357 KGTIPSLSIFTLMIFDEC 374
K + L+ + + DE
Sbjct 233 KRKLIDLTKIRVFVLDEA 250
>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis
thaliana OX=3702 GN=RH35 PE=2 SV=1
Length=591
Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 70/180 (39%), Gaps = 24/180 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+ K+ L LQ+ ++F + +A VD + ++ +L G
Sbjct 381 KQEAKIVYLLECLQK-----TSPPVLIFCENKADVDDIHEYL------------LLKGVE 423
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ G ++ + +FKA G ++L+AT VA +G+D VI Y+ + +
Sbjct 424 AVAIHGGKDQEDREYAISSFKA-GKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYV 482
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL-----QTWDEAVFREKI 780
GR R K + T+ + E + + ++ ++ R+ + D E I
Sbjct 483 HRIGR-TGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAETI 541
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 65/413 (16%), Positives = 126/413 (31%), Gaps = 40/413 (10%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
P +N + P + +P Q++ + G++ I A TG GKT V +L
Sbjct 143 PPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVL 202
Query 277 IC------EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF--------ERHGYRVT 322
E + G+ + + Q V ++ +
Sbjct 203 PMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLC 262
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK--- 379
+ E + I++ TP L + L K + SL + DE
Sbjct 263 IGGIDMRSQL--EVVKRGVHIVVATPGRLKDMLAKKKM-SLDACRYLTLDEADRLVDLGF 319
Query 380 QHPYNMIMFNYLDQK----LGGSSGPLPQVIGLTA---SVGVGDAKNTDEALDYICKLCA 432
+ + ++ Q+ + Q+ +A V V + LD I ++
Sbjct 320 EDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEY 379
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
+ I L E Q P F + ++ + D +Y+ L++ E++A KD
Sbjct 380 VKQEAKIV----YLLECLQKTSPPVLIFCENKADVDDIHEYL---LLKGVEAVAIHGGKD 432
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
E+ + + K + V V + D + I + + +
Sbjct 433 QED----REYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY--VHRIG 486
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+ A ++ S + Q+ QR L EL +
Sbjct 487 RTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEEAE 539
>sp|C4LB49|RHLB_TOLAT ATP-dependent RNA helicase RhlB OS=Tolumonas
auensis (strain DSM 9187 / TA4) OX=595494 GN=rhlB PE=3
SV=1
Length=425
Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/243 (18%), Positives = 91/243 (37%), Gaps = 30/243 (12%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ +E + + + Q ++ PSNE+ + +L PE
Sbjct 205 VQELAYEHMNEPQHIQIEPEQMTGQRIKEELFYPSNED----KMLLLLTLMEEDWPE-KA 259
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+F T+ + + W++ + + G+LTG + + IL+ F +G
Sbjct 260 IIFANTKHGCEDVHAWLQADGH----RVGLLTG--------DVPQKKRLKILEDF-TAGL 306
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIE 749
++L+AT VA G+ I + V Y+ + + GR GRA S + + E
Sbjct 307 LDVLVATDVAARGLHIPDVSHVFNYDLPDDAEDYVHRIGRTGRAGRSGHAISFA----CE 362
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF-------IRDSQEKPKPVPD 802
N+ + + + + +D + + + + + +RD Q + P
Sbjct 363 DYAFNLPEIEEYTHHPIPVSKYDPSALLDDVTAPKRVVRHRLPVNRNMRDRQSTGRRRPG 422
Query 803 KEN 805
++
Sbjct 423 NKS 425
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 8/134 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLL------ICEHHLKKFPQGQKGKVVFFANQI 300
Q E + GKN A TG GKT ++ L + H + + +V+ A
Sbjct 36 QAETIPLLLTGKNIAGQAQTGTGKT-IAFLAGTFNYLLTHSASAERRQNQPRVLIMAPTR 94
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + E G+++ G + + + E D++I T +++ LK+G I
Sbjct 95 ELAVQIYNDAVPMSESCGFKMGLAYGGDGYDKQLAVLQEGVDLLIGTTGRIIDYLKQGII 154
Query 361 PSLSIFTLMIFDEC 374
L +++ DE
Sbjct 155 D-LGAIQVVVLDEA 167
>sp|Q2HGF7|DBP5_CHAGB ATP-dependent RNA helicase DBP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP5 PE=3 SV=1
Length=479
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/177 (19%), Positives = 66/177 (37%), Gaps = 28/177 (16%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ ++ + + D +E+ K + LC + Y L +++FV+TR ++ +E +
Sbjct 280 DLTVKGISQMYMDCPDESKKYDILC----KLYGLMTIGSSVIFVRTRESASEIQRRMEAD 335
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + + + +LD F+ SG +LI T+V GID++ +
Sbjct 336 ------------GHKVSALHGAHEGQNRDALLDDFR-SGRSKVLITTNVLARGIDVSSVS 382
Query 711 LVILYEYV-----------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
+VI Y+ + I GR G + +I +
Sbjct 383 MVINYDIPMKGPGDKEPDMETYLHRIGRTGRFGRVGVSISFVYDRKSYDALSKIADH 439
Score = 50.6 bits (119), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 72/192 (38%), Gaps = 14/192 (7%)
Query 188 VEKGIKDVETEDLE---DKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPR 244
V KG+ + T D+E ++ D + Y + L + N P K +
Sbjct 41 VNKGLVET-TYDVEVKLSGLQADDESLLYSGVASFEELGLAKSINDGLLAMNFKKPSKIQ 99
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
L L L + +N I + +G GKT +L + Q + + A +
Sbjct 100 EKALPLML-SNPPRNMIAQSQSGTGKTAAFVLTVLSRVDLTKPTQP-QALLLAPSRELAR 157
Query 305 QQKSVFSKY--FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q +SV F + I G+ + V ++++ TP +++ +++
Sbjct 158 QIQSVIQTIGQFCENLNVEAAIPGSISRETGVRA-----NVVVGTPGTVMDLIRRRQFD- 211
Query 363 LSIFTLMIFDEC 374
+S +M+ DE
Sbjct 212 VSQLKIMVIDEA 223
>sp|Q2TBP1|DDX25_BOVIN ATP-dependent RNA helicase DDX25 OS=Bos
taurus OX=9913 GN=DDX25 PE=2 SV=1
Length=483
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 26/170 (15%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
+ ++ E L + N K + LC I Y I+F +TR
Sbjct 296 DPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCNI----YGGITIGQAIIFCQTRRNA 351
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L + + G + + +T+ + I+ F+ G +LI T+V
Sbjct 352 KWLTVEMMQD------------GHQVSLLSGELTVDQRASIIQRFR-DGKEKVLITTNVC 398
Query 701 DEGIDIAQCNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFLL 741
GID+ Q +V+ ++ + I GR +G ++
Sbjct 399 ARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMI 448
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 51/138 (37%), Gaps = 11/138 (8%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE---HHLKKFPQGQKGKVVFF 296
P K + L + L +N I + +G GKT +L + LK FPQ +
Sbjct 120 PSKIQEMALPMMLAH-PPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ-----CLCL 173
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
A + Q V + + V + +P V I+I TP +++
Sbjct 174 APTYELALQTGRVVER-MGKFCVDVQVMYAIRGNRIPRGTDVTK-QIVIGTPGTVLDWCF 231
Query 357 KGTIPSLSIFTLMIFDEC 374
K + L+ + + DE
Sbjct 232 KRKLIDLTKIRVFVLDEA 249
>sp|Q9HXE5|RHLB_PSEAE ATP-dependent RNA helicase RhlB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rhlB
PE=3 SV=1
Length=397
Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 102/313 (33%), Gaps = 32/313 (10%)
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+L Q +++ + + I + ++ Q+ +D +L K L ++ + +F Q
Sbjct 70 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG--LNVMTFVGGMDFDKQ 127
Query 508 ------KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
++ +V + F + + + + + + R
Sbjct 128 LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 187
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRF--EEKLQELESVSRDPSNENPKLEDL----- 614
+ + A F + +L +++ + + E+E + + +
Sbjct 188 PHKGERQTLLFS---ATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDK 244
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L N ++F + V ++ + + G + +
Sbjct 245 YKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKD------------GISAAQMSGDVP 292
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ L+ F+ G +L+AT VA GI I + VI + + + GR GRA
Sbjct 293 QHKRIRTLEGFR-EGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 351
Query 734 RGSKCFLLTSNAG 746
S + +
Sbjct 352 GASGTSISFAGED 364
Score = 66.3 bits (160), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 8/168 (5%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
++ + + N P + +L P+ Q ++ ++G++ I A TG GKT
Sbjct 3 EPQEGKTRFHDFNLAPSLMHAIHDLGFPYCT-PIQAQVLGFTLRGQDAIGRAQTGTGKTA 61
Query 273 VSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
L+ L + P ++ + + A + Q + + G V G
Sbjct 62 AFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGG 121
Query 328 TAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++Q+ DI++ TP L++ ++G + L + +M+ DE
Sbjct 122 MDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVH-LDMVEVMVLDEA 168
>sp|Q02S21|RHLB_PSEAB ATP-dependent RNA helicase RhlB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) OX=208963 GN=rhlB PE=3
SV=1
Length=397
Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 102/313 (33%), Gaps = 32/313 (10%)
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+L Q +++ + + I + ++ Q+ +D +L K L ++ + +F Q
Sbjct 70 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG--LNVMTFVGGMDFDKQ 127
Query 508 ------KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
++ +V + F + + + + + + R
Sbjct 128 LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 187
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRF--EEKLQELESVSRDPSNENPKLEDL----- 614
+ + A F + +L +++ + + E+E + + +
Sbjct 188 PHKGERQTLLFS---ATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDK 244
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L N ++F + V ++ + + G + +
Sbjct 245 YKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKD------------GISAAQMSGDVP 292
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ L+ F+ G +L+AT VA GI I + VI + + + GR GRA
Sbjct 293 QHKRIRTLEGFR-EGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 351
Query 734 RGSKCFLLTSNAG 746
S + +
Sbjct 352 GASGTSISFAGED 364
Score = 66.3 bits (160), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 8/168 (5%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
++ + + N P + +L P+ Q ++ ++G++ I A TG GKT
Sbjct 3 EPQEGKTRFHDFNLAPSLMHAIHDLGFPYCT-PIQAQVLGFTLRGQDAIGRAQTGTGKTA 61
Query 273 VSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
L+ L + P ++ + + A + Q + + G V G
Sbjct 62 AFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGG 121
Query 328 TAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++Q+ DI++ TP L++ ++G + L + +M+ DE
Sbjct 122 MDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVH-LDMVEVMVLDEA 168
>sp|B7UUT0|RHLB_PSEA8 ATP-dependent RNA helicase RhlB OS=Pseudomonas
aeruginosa (strain LESB58) OX=557722 GN=rhlB PE=3 SV=1
Length=397
Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/313 (13%), Positives = 102/313 (33%), Gaps = 32/313 (10%)
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+L Q +++ + + I + ++ Q+ +D +L K L ++ + +F Q
Sbjct 70 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG--LNVMTFVGGMDFDKQ 127
Query 508 ------KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
++ +V + F + + + + + + R
Sbjct 128 LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 187
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRF--EEKLQELESVSRDPSNENPKLEDL----- 614
+ + A F + +L +++ + + E+E + + +
Sbjct 188 PHKGERQTLLFS---ATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDK 244
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L N ++F + V ++ + + G + +
Sbjct 245 YKLLYNLVAQNNWERVMVFANRKDEVRRIEERLTKD------------GISAAQMSGDVP 292
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ L+ F+ G +L+AT VA GI I + VI + + + GR GRA
Sbjct 293 QHKRIRTLEGFR-EGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 351
Query 734 RGSKCFLLTSNAG 746
S + +
Sbjct 352 GASGTSISFAGED 364
Score = 66.3 bits (160), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 8/168 (5%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
++ + + N P + +L P+ Q ++ ++G++ I A TG GKT
Sbjct 3 EPQEGKTRFHDFNLAPSLMHAIHDLGFPYCT-PIQAQVLGFTLRGQDAIGRAQTGTGKTA 61
Query 273 VSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA 327
L+ L + P ++ + + A + Q + + G V G
Sbjct 62 AFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGG 121
Query 328 TAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ ++Q+ DI++ TP L++ ++G + L + +M+ DE
Sbjct 122 MDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVH-LDMVEVMVLDEA 168
>sp|A3LRW2|DBP3_PICST ATP-dependent RNA helicase DBP3 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP3 PE=3 SV=1
Length=526
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET-ITIL 632
V+ + D E +R + ++ +E K + L +L++ + + ++
Sbjct 316 VKVSIGDRDELAANKRITQIVEVIEPF--------DKEKKLLGLLRQYQSGSKKNDKVLI 367
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F + ++ + N + ++ + L++FK G+ +
Sbjct 368 FALYKKEATRIEGLLRRNS------------YNVAAIHGDLSQQQRTNALNSFK-KGESS 414
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
+L+AT VA G+DI +VI + + I GR G+ L T + +
Sbjct 415 LLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEHEKHLS 474
Query 750 KEQINMYK 757
+N+ +
Sbjct 475 GALMNILR 482
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/368 (15%), Positives = 117/368 (32%), Gaps = 28/368 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF-FANQIPVYEQQKSVFSKY 313
+ GK+ I A TG GKTF + +++ G+ G V + + Q
Sbjct 151 LSGKDVIGVAETGSGKTFAFGVPAINNILTL--GKSGLSVLCISPTRELASQIYDNLVDL 208
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ + G ++ V+ ++N ++++ TP L++ ++ G + L ++ DE
Sbjct 209 TSNTNVKCVCVYGGVPKHDQVKN-LKNANVVVATPGRLLDLIEDGAVN-LGTVDYLVLDE 266
Query 374 CHN---TSKQHPYNMIM---FNYLDQKLGGSSGPLPQV--IGLT-------ASVGVGDAK 418
T + I+ Q L ++ +V + T S+G D
Sbjct 267 ADRMLETGFEDAIKAIIGGTKKENRQTLMFTATWPQEVRKLASTFMNQPVKVSIGDRDEL 326
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
++ + I ++ D K L L Q +K + + + K I L
Sbjct 327 AANKRITQIVEVIEPFDKE-----KKLLGLLRQYQSGSKKNDKVLIFALYKKEATRIEGL 381
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+R I DL + + ++ A +P+ + L
Sbjct 382 LRRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPL 441
Query 539 FLYT---SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ R + H + +L N+ + +L + +
Sbjct 442 TVEDYVHRIGRTGRAGQTGTAHTLFTEHEKHLSGALMNILRGANQPVPDELLKFGGHTKK 501
Query 596 ELESVSRD 603
+ S
Sbjct 502 KAHSAYGA 509
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2
SV=1
Length=1049
Score = 84.8 bits (208), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 66/167 (40%), Gaps = 19/167 (11%)
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
+ + + + EN + L +L E + + ++FV ++ D+L + +
Sbjct 641 VNKDITQLVEVRPENERFFRLLELLGEWFD---KGKILVFVHSQDKCDSLLKDLFQH--- 694
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
G + + G ++ L FK++ ++LIATSVA G+D+ + LV+
Sbjct 695 ---------GYPCLSLHGGKDQTDRESTLADFKSN-VCSLLIATSVAARGLDVKELELVV 744
Query 714 LYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
Y+ + + + GR +G ++ + + +
Sbjct 745 NYDVPNHYEDYVHRVGRTGRAGRKGFAVTFISEEEERYAPDLVKALE 791
Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/191 (22%), Positives = 79/191 (41%), Gaps = 6/191 (3%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQL 248
K I + E++ + ++++ ++ P+ S S++ DT F+ P + Q
Sbjct 393 KDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQA 452
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQ 305
+ M G++ I A TG GKT +L H+K P G + A + Q
Sbjct 453 QALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQ 512
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPSL 363
S K+ + G I G + + ++ +I++ TP +++ L G I +L
Sbjct 513 IHSDIKKFSKALGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNL 572
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 573 RRVTFLVMDEA 583
>sp|Q6BP45|ROK1_DEBHA ATP-dependent RNA helicase ROK1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=ROK1 PE=3 SV=2
Length=550
Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/237 (19%), Positives = 79/237 (33%), Gaps = 21/237 (9%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+ + + + + E +E NE KL + ++Q+ P
Sbjct 308 VEEMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQGEFKPP---I 364
Query 631 ILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
I+F+++ AL + + + + T + ++ FK SG
Sbjct 365 IIFLQSITRAKALFHELLYDRLNVDVI-------------HAERTPKQRDEVIKRFK-SG 410
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAG 746
D +LI T V G+D NLVI Y+ + + I GRG G T
Sbjct 411 DIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDD 470
Query 747 VIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDK 803
K IN+ K+ + + + ++ HE + PK + K
Sbjct 471 KAVKPIINVMKQSGCESGYSGWLEDMHKLSKNEKKDVKKHEIKRKQISTVPKIMKQK 527
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 11/190 (6%)
Query 189 EKGIKDVETEDLEDKMETSDIQIF-YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQ 247
+ K + + E + I +++ L + +S+ +P Q
Sbjct 87 DDARKLRKLNKSKVSGEDIPLPIGSFEDLIGRYKLDKK-----LLSNLIDAGFTEPTPIQ 141
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKV--VFFANQIPVYE 304
E +++G++ I CAPTG GKT L+ L+ P + + + + +
Sbjct 142 DEAIPISLEGRDLIACAPTGSGKTLAFLIPLVQTILQSNPNVKNYGIRGLIISPTNELAV 201
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSL 363
Q + + ++ +S A + + I DI++ TP L++++K TI SL
Sbjct 202 QIFQELNTMTKGKKMKIGILSKQLANKINNKIINSSKYDILVSTPLRLIDSIKNETI-SL 260
Query 364 SIFTLMIFDE 373
S ++ DE
Sbjct 261 SKVEQLVIDE 270
>sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis
thaliana OX=3702 GN=RH39 PE=2 SV=2
Length=621
Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/345 (20%), Positives = 111/345 (32%), Gaps = 30/345 (9%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI-QNREFG 505
EL + VY+ K +R +++ +SL I + +I Q+ E G
Sbjct 199 RELSEQVYRVAKSI-SHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEG 257
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
Y V E R A + + A M A+
Sbjct 258 NMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQ 317
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
L D F IE T +K+ S KLE L +L+ L
Sbjct 318 KLVD-------EEFQGIEHLRTSTLHKKIANARHDFIKLSGGEDKLEALLQVLEP--SLA 368
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ ++F T A+ +++ N N + + + L F
Sbjct 369 KGSKVMVFCNTLNSSRAVDHYLSENQ------------ISTVNYHGEVPAEQRVENLKKF 416
Query 686 K-ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
K GD L+ T +A G+D+ + V+++++ N I + GR R K L
Sbjct 417 KDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVTSLV 475
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
S + +I +E M N+ L T D HI +
Sbjct 476 SRKDQMLAARI---EEAMRNNESLESLTTDNVRRDAARTHITQEK 517
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 78/200 (39%), Gaps = 14/200 (7%)
Query 262 ICAP--TGCGKTFVSLLICEH-------HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ TG GKT LL +L K + ++ + V + EQ V
Sbjct 152 VVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKS 211
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+R +SG + + + D+++ TP ++ ++++G + ++ D
Sbjct 212 ISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGD-IAYLVLD 270
Query 373 ECHNTSKQHPYNMIMFNY---LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICK 429
E +T + + + L+Q+ ++ Q + +TA++ + K DE I
Sbjct 271 EA-DTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEH 329
Query 430 LCASLDASVIATVKHNLEEL 449
L S IA +H+ +L
Sbjct 330 LRTSTLHKKIANARHDFIKL 349
>sp|Q0JM17|RH56_ORYSJ DEAD-box ATP-dependent RNA helicase 56 OS=Oryza
sativa subsp. japonica OX=39947 GN=AIP1 PE=1 SV=2
Length=432
Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/160 (22%), Positives = 62/160 (39%), Gaps = 20/160 (13%)
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + +N KL DL L ++FVK+ + L +
Sbjct 273 IKLSEAEKNRKLNDLLDALDF-------NQVVIFVKSVSRAAELNKLLCE--------CN 317
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ ++GMT + FK G IL+AT + GIDI + N+VI Y+
Sbjct 318 F----PAISIHSGMTQEERLTRYKNFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPD 372
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ + GR G+K +T + + + +N +E+
Sbjct 373 SADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQER 412
Score = 42.8 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 33/139 (24%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + I A +G GKT V +L + V +
Sbjct 73 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALV--LCHTRE 130
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND---IIILTPQILVNNL 355
+ Q + FSKY +V G + + ND I++ TP ++ L
Sbjct 131 LAYQICHEFERFSKYLPEV--KVAVFYGGVHIKKHKD--LLKNDCPHIVVGTPGRIL-AL 185
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL I DEC
Sbjct 186 AREKDLSLKNVRHFILDEC 204
>sp|Q5JK84|RH15_ORYSJ DEAD-box ATP-dependent RNA helicase 15 OS=Oryza
sativa subsp. japonica OX=39947 GN=AIP2 PE=1 SV=1
Length=432
Score = 83.3 bits (204), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/160 (22%), Positives = 62/160 (39%), Gaps = 20/160 (13%)
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + +N KL DL L ++FVK+ + L +
Sbjct 273 IKLSEAEKNRKLNDLLDALDF-------NQVVIFVKSVSRAAELNKLLCE--------CN 317
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ ++GMT + FK G IL+AT + GIDI + N+VI Y+
Sbjct 318 F----PAISIHSGMTQEERLTRYKNFK-EGHKRILVATDLVGRGIDIERVNIVINYDMPD 372
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ + GR G+K +T + + + +N +E+
Sbjct 373 SADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQER 412
Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 33/139 (24%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + I A +G GKT V +L + V +
Sbjct 73 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALV--LCHTRE 130
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND---IIILTPQILVNNL 355
+ Q + FSKY +V G + + ND I++ TP ++ L
Sbjct 131 LAYQICHEFERFSKYLPEV--KVAVFYGGVHIKKHKD--LLKNDCPHIVVGTPGRIL-AL 185
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL I DEC
Sbjct 186 AREKDLSLKNVRHFILDEC 204
>sp|Q2UH00|PRP28_ASPOR Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
OX=510516 GN=prp28 PE=3 SV=1
Length=803
Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 69/178 (39%), Gaps = 17/178 (10%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E + +E + E+ + + L IL P I+FV + DA+ I+
Sbjct 609 GEAVDTVEQRVEFIAGEDKRKKRLGDILSSGEFRPP---IIVFVNIKRNCDAIAREIKQW 665
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + +G ++L+AT +A GID+ +
Sbjct 666 ------------GFSSVTLHGSKTQEQREAALASVR-NGQTDVLVATDLAGRGIDVPDVS 712
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
LVI + + GR R K + + G + + + K+ +M SI RL
Sbjct 713 LVINFNMATTIESYTHRIGR-TGRAGKSGVAITFLGNEDTDVMYDLKQMIMKSSISRL 769
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 78/207 (38%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTN 236
RN+ + W EK ++ + D E +I P ++ E+ P + N
Sbjct 325 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWDESGLPKRLMELVN 383
Query 237 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+P Q AM+ ++ I A TG GKT +++ L + +
Sbjct 384 KVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEW-RK 442
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ E G+ V I G + + +III T
Sbjct 443 NDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIAT 502
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 503 PGRLVDCIERRMLV-LSQCCYVIMDEA 528
>sp|A5DS77|DBP2_LODEL ATP-dependent RNA helicase DBP2 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP2 PE=3 SV=1
Length=552
Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/256 (18%), Positives = 87/256 (34%), Gaps = 40/256 (16%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A + +D+ N +E + +
Sbjct 278 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLDNPIQVTIGSLELAASHTITQ 337
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
+Q + + DL E + + ++F T+ D + +++ +
Sbjct 338 IVQVVTEYQK---------RDLLVKHLESALADSNSKVLVFASTKRTCDEVTSYLRAD-- 386
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + +L F+ G H+I++AT VA GID+ V
Sbjct 387 ----------GWPALAIHGDKEQHERDWVLKEFR-QGSHSIMVATDVAARGIDVKGITHV 435
Query 713 ILYEYVGNVIKMIQTR---GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSIL--- 766
+ Y+ GN+ + GRG A G+ T N + + K+M ++
Sbjct 436 VNYDMPGNIEDYVHRIGRTGRGGATGTAISFFTDNEKKLGGDLC-----KIMREAKQTIP 490
Query 767 -RLQTWDEAVFREKIL 781
LQ +D + I
Sbjct 491 PELQAYDRRSYGSHIR 506
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/181 (22%), Positives = 73/181 (40%), Gaps = 5/181 (3%)
Query 198 EDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK 256
++E + +++ I + P + E P +++ KP Q + A+
Sbjct 93 REIEQFRKENEMSILGHDIPHPITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALS 152
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKY 313
G++ + A TG GKT L H+ P +G V+ A + Q ++ SK+
Sbjct 153 GRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTECSKF 212
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
R T + G + + + +I I TP L++ L+ G +L T ++ DE
Sbjct 213 GASSRIRNTCVYGGAPKGPQIRDLANGVEICIATPGRLIDMLEAGK-TNLKRVTYLVLDE 271
Query 374 C 374
Sbjct 272 A 272
>sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=DBP10 PE=3 SV=1
Length=762
Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 65/192 (34%), Gaps = 16/192 (8%)
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
+I A K + D FFS + L + L E + + + +
Sbjct 288 LIRLDAETKVSPDLESAFFSVKGGEKEGALLHILHDVIKMPLGVPEGIEEETDEQQARKR 347
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
+ E TI+F T+ V+ + + + G +
Sbjct 348 KRDSERRNRKEKPTEHSTIIFTATKHHVEYIAHLLR------------HAGFSVSYIYGS 395
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG--- 729
+ A+K +D F+ G NIL+ T VA GIDI VI Y++ + G
Sbjct 396 LDQTARKIQVDNFRR-GRTNILVVTDVAARGIDIPVLANVINYDFPPQPKIFVHRVGRTA 454
Query 730 RGRARGSKCFLL 741
R RG LL
Sbjct 455 RAGQRGWAYALL 466
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 47/120 (39%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 121 LERRDVVGMARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELG 180
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DIII TP ++ LK +LS ++FDE
Sbjct 181 KGTDLKTVLLVGGDSLEEQFGLMAANPDIIIATPGRFLH-LKVEMSLNLSSVRYVVFDEA 239
>sp|Q9Z6C9|CSHA_LIMRT ATP-dependent RNA helicase CshA OS=Limosilactobacillus
reuteri OX=1598 GN=cshA PE=3 SV=1
Length=497
Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 34/231 (15%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL-ESVSRDPSNENPK 610
++ + A + +L+D S ++ D + +++ + DP K
Sbjct 146 TLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIK 205
Query 611 LEDLCFILQEEYHLNPET-----------------ITILFVKTRALVDALKNWIEGNPKL 653
++L L ++Y++ +TI+F +T+ VD L +
Sbjct 206 AKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGL------ 259
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
I G + +T + I+ FK + + +IL+AT VA G+DI+ V
Sbjct 260 ------IARGYNAAGIHGDLTQDKRSKIMWKFKNN-ELDILVATDVAARGLDISGVTHVY 312
Query 714 LYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
Y+ + + GR G +T N E + + +M+
Sbjct 313 NYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRML 363
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 50/120 (42%), Gaps = 3/120 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GK+ I A TG GKT L ++ + + + + + Q + +
Sbjct 36 LEGKDVIGQAQTGTGKTAAFGLPIIENVDT--ENPNIQAIIISPTRELAIQTQEELYRLG 93
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ RV + G ++ + ++ I++ TP L +++ + T+ L ++ DE
Sbjct 94 KDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTV-KLDHIKTLVLDEA 152
>sp|A7TJ36|DBP3_VANPO ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP3 PE=3 SV=1
Length=530
Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 73/201 (36%), Gaps = 26/201 (13%)
Query 561 KDALDYLKDFFSN-VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
K+ + F ++ ++ + + E +R + ++ ++ K L +L+
Sbjct 306 KEVRELASTFMNSPIKVSIGNTDELSANKRITQIVEVIDPFK--------KERKLLELLK 357
Query 620 EEYHLNP-ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ + + ++F + ++ + N G + + ++ +
Sbjct 358 KYQSGSKKDDKVLIFALYKKEAARVERNLNYN------------GYKVSAIHGDLSQQQR 405
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARG 735
LD FK +G +IL+AT VA G+DI VI + + I GR G
Sbjct 406 TNALDEFK-TGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGKTG 464
Query 736 SKCFLLTSNAGVIEKEQINMY 756
+ L T + +N+
Sbjct 465 TAHTLFTEQEKHLAGSLVNVL 485
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 54/124 (44%), Gaps = 6/124 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----VVFFANQIPVYEQQKSVF 310
+ GK+ I A TG GKTF + +++ + GK V+ + + Q
Sbjct 150 LAGKDVIGVAETGSGKTFAFGVPAINNILTKSGSKPGKNGIQVLIISPTRELASQIYDNL 209
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
++ G + G ++ Q ++ + +++ TP L++ +++G +LS ++
Sbjct 210 VILTDKVGLECCCVYGGVPKDEQRTQ-LKRSQVVVATPGRLLDLIQEGA-ANLSNVNYLV 267
Query 371 FDEC 374
DE
Sbjct 268 LDEA 271
>sp|Q9CJS1|RHLB_PASMU ATP-dependent RNA helicase RhlB OS=Pasteurella
multocida (strain Pm70) OX=272843 GN=rhlB PE=3 SV=1
Length=423
Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 19/206 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ +R +H L + ++ E + ++ ++
Sbjct 171 LGFIKDIRYLLRKCPAPQHRLTMLFSATLSYKVRELAFEDMNDPEYVEIEPLQKTGHRIK 230
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
PSN++ + +L PE I+F T+ + + ++ + +
Sbjct 231 EELFYPSNQD----KMALLLTLLEEEWPE-RCIIFANTKHRCEDIWGYLAADGH----RV 281
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+LTG + + +L F G +IL+AT VA G+ I+ + V Y+
Sbjct 282 GLLTG--------DVAQKKRLSLLKQF-TEGHLDILVATDVAARGLHISDVSHVFNYDLP 332
Query 719 GNVIKMIQTRGR-GRARGSKCFLLTS 743
+ + GR GRA S + +
Sbjct 333 DDREDYVHRIGRTGRAGESGVSISFA 358
Score = 66.3 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/124 (23%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVF 310
++ GK+ A TG GKT L HHL + G + + A + Q +
Sbjct 43 SLAGKDVAGQAQTGTGKTMAFLTATFHHLLTQQGDKGGRQPRALILAPTRELAVQINNDA 102
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+ + G + G ++ I + DI+I T +++ +K+G I L +++
Sbjct 103 ALLTKATGLKTGLAYGGDGYEKQLKAIEQGVDILIGTTGRVIDYVKQG-IVRLDKIQVVV 161
Query 371 FDEC 374
DE
Sbjct 162 LDEA 165
>sp|Q4HZ42|DBP10_GIBZE ATP-dependent RNA helicase DBP10 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075
/ NRRL 31084 / PH-1) OX=229533 GN=DBP10 PE=3 SV=1
Length=897
Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 28/288 (10%)
Query 503 EFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY-----------NDA 551
E V +A +F+M + + I AL L
Sbjct 219 EMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLLFSATLPASLVEFARAG 278
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
L R+ D S A E E L + ++ +N++ K
Sbjct 279 LQDPSLVRLDAEQKVSPDLESAFFAVKGAEKEGSLLHILHDVIKMPVGSPEGVNNDSEKG 338
Query 612 EDLCFILQEEYHLNP-ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+ P E TI+F T+ V+ L N + I G +
Sbjct 339 SKKRKRGADGGSGKPTEHSTIIFTATKHHVEYLANLL------------IYAGFAVSYVY 386
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG- 729
+ A++ ++ F+ G NIL+ T VA GIDI VI +++ + G
Sbjct 387 GSLDQTARRIQVEDFRM-GKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVFVHRVGR 445
Query 730 --RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
R RG L+ + +K++ + ++ E V
Sbjct 446 TARAGQRGWSYSLVRDTDAPYLIDLQLFLGKKLVVGQETKNPSFSEDV 493
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ K+ + A TG GKT ++ L+ + + + + Q V ++
Sbjct 117 LDRKDLVGMARTGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFS 176
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 177 RGTDLKCVLLVGGDSLEEQFGYMAANPDIVIATPGRFLH-LKVEMSLDLSSIKYVVFDEA 235
>sp|Q86B47|Y8611_DROME Probable ATP-dependent RNA helicase CG8611
OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1
Length=975
Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats.
Identities = 86/578 (15%), Positives = 173/578 (30%), Gaps = 111/578 (19%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPV 302
Q + ++GK+ ++ + TG GKT L L+K + + +
Sbjct 355 QQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTREL 414
Query 303 YEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
Q + K + + + V G + G + ++ + +I+I TP LV++L
Sbjct 415 VMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHTASF 474
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
L+ +I DE D+ L D K
Sbjct 475 KLTKLQFLILDEA-----------------DRLLELGYE--------------RDVKQLV 503
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
EA+D C + L + +++ YI
Sbjct 504 EAIDKQRAECEDK-----ELPQLQRMLLSATLTS---QVQQLAGLTLKNPLYIDNSDEAA 555
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+ +L + E + + + G +Y++ + V Q+ ++ L
Sbjct 556 SAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKL--RLVAL 613
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
+S L K DA A + + + +F ++ + + LT+R ++ E E
Sbjct 614 SSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDM-------LNEALTRRVLDEEDEQEKGD 666
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
D + P L+ L + + +F R + L +
Sbjct 667 SDDDGDIPLLQGLR-FFKLHGSMTQTERQGVFRGFRDCASCV------------LLATDV 713
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
GRG ID+ LV+ Y
Sbjct 714 VGRG--------------------------------------IDVPDIKLVVQYTPPQTT 735
Query 722 IKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
+ GR RA R + L + + E + + ++K + + + + + +
Sbjct 736 ADFVHRVGRTARAGRKGRAVLFLTPS---EAQFVRHLEKKRIRIQQGDMYAYLQTLLPKD 792
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALA 817
E + + D +++L + CKA
Sbjct 793 DEARTVQEAASNLQHKFQTLLED--DRELHDKSCKAFV 828
>sp|Q4P9P3|DRS1_USTMA ATP-dependent RNA helicase DRS1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DRS1 PE=3 SV=1
Length=932
Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/199 (21%), Positives = 72/199 (36%), Gaps = 26/199 (13%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L + T++FV+++ L LK L G + ++
Sbjct 601 LLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFG------------LLGLSAGELHGDLSQE 648
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
+ L F+ G + L+AT +A G+DI VI Y+ G + GR RA R
Sbjct 649 QRIDALTDFR-DGKTDFLLATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGR 707
Query 735 GSKCFLLTSNAG------VIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
+ L A I+K K +++ ++ E + R L +
Sbjct 708 NGRAVTLVGEADRRMLKLAIKKSSAEQIKHRIIPSAVAA--HMCETLER---LKPEVDAV 762
Query 789 FIRDSQEKPKPVPDKENKK 807
+ +EK + + E KK
Sbjct 763 LREEKEEKALRIAEMELKK 781
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/197 (19%), Positives = 68/197 (35%), Gaps = 21/197 (11%)
Query 199 DLEDKMETSDIQIFYQEDP----------------ECQNLSENSCPPSEVSDTNLYSPFK 242
DLE + E + F+ EDP + + + S K
Sbjct 296 DLETEQEKARKAAFFAEDPIATSADSSSKSKSTNDAESSFGAFDLSRPVLRALSSLSFHK 355
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-----PQGQKGKVVFFA 297
P Q A+ GK+ + A TG GKT ++ L P K +V+ A
Sbjct 356 PTPIQSRTIPIALAGKDIVAGAVTGSGKTAAFMIPTIERLTWRAKTRTPHEAKSRVLILA 415
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q SV + R G + ++ +++I TP L+++++
Sbjct 416 PTRELAIQCYSVGKSIAKFTDIRFCLCVGGLSVKSQEAELKLRPEVVIATPGRLIDHVRN 475
Query 358 GTIPSLSIFTLMIFDEC 374
+L +++ DE
Sbjct 476 SASFTLDDIEILVMDEA 492
>sp|P44922|RHLB_HAEIN ATP-dependent RNA helicase RhlB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=rhlB PE=3 SV=2
Length=415
Score = 82.5 bits (202), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/308 (16%), Positives = 103/308 (33%), Gaps = 45/308 (15%)
Query 456 PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVT 515
P + + I + + Q+ D E LAK +G Y++ +
Sbjct 77 PNLKYPHPRALILAPTRELAVQISNDAEFLAKASGLKT-------ALAYGGDGYDKQLQA 129
Query 516 VQKACMVF-------------QMPDKDEESRICKAL------FLYTSHLRKYNDALIISE 556
+++ + + DE + + +R +
Sbjct 130 IERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPAPQ 189
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
L + +E E + ++ ++ PSN++ K+ L
Sbjct 190 ARLTMLFSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQD-KMALLLT 248
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
++++E+ I+F T+ + + ++ + + G+LTG +
Sbjct 249 LMEDEWPE----RCIVFANTKHRCEEIWGYLAADGH----RVGLLTG--------DVAQK 292
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
+ +L F GD +IL+AT VA G+ I+ V Y+ + + GR GRA
Sbjct 293 KRLSLLKQF-TDGDLDILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGE 351
Query 736 SKCFLLTS 743
S + +
Sbjct 352 SGVSISFA 359
Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG----KVVFFANQIPVYEQQKSV 309
++ G++ A TG GKT L HHL + + A + Q +
Sbjct 43 SLNGRDVAGQAQTGTGKTMAFLTATFHHLLTHQDPNLKYPHPRALILAPTRELAVQISND 102
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ G + G + ++ I DI+I T +++ +K+G I L ++
Sbjct 103 AEFLAKASGLKTALAYGGDGYDKQLQAIERGVDILIGTTGRVIDYVKQGVIG-LDEIQVV 161
Query 370 IFDEC 374
+ DE
Sbjct 162 VLDEA 166
>sp|Q6C3X7|DBP5_YARLI ATP-dependent RNA helicase DBP5 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP5 PE=3
SV=1
Length=488
Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 96/283 (34%), Gaps = 33/283 (12%)
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
K+ +L ++ E G + Q +V + + + + + ++
Sbjct 193 KKFTDITTHLIVPESTERGQKVTSQILVGTPGSVAGLLQKKQIDAKHVKVFVLDEADNMV 252
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFD-------EIEQDLTQRFEEKLQELES 599
+ + + + + F + + D + + E + +
Sbjct 253 DSSMGSTCARIKKYLPSSTQVVLFSATFPESVLDLAGKMCPNPNEIRLKANELNVDAITQ 312
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ D + K + L +E Y + +++FV R+ +AL + N
Sbjct 313 LYMDCEDGEEKFKML----EELYSMLTIASSVIFVAQRSTANALYQRMSKN--------- 359
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G + ++ +++ + ++D F+ G +LI+T+V GIDIA ++V+ Y+
Sbjct 360 ---GHKVSLLHSDLSVDERDRLMDDFRF-GRSKVLISTNVIARGIDIATVSMVVNYDLPT 415
Query 720 ---------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQI 753
+ I GR G + A + I
Sbjct 416 DKNGKPDPETYLHRIGRTGRFGRSGVSISFVHDEASFEVLDSI 458
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 48/253 (19%), Positives = 83/253 (33%), Gaps = 30/253 (12%)
Query 138 EILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVET 197
E L++ K A E VE + DK K E+ ++ + +D +
Sbjct 10 EKLELQKEKNQAAATEAKVEEVKEDDK-------KDVKEELNEDDKKVAKEDDKKEDAKE 62
Query 198 EDLEDKMETSDIQIFYQEDPECQNLSENSCPP----SEVSDTNLYSPFKPRNYQLE---- 249
E ED E + IQ Y+ + +L + P D L Y ++
Sbjct 63 ESKEDAEENNLIQTEYEVRVKLADLQADPNSPLYSAKRFEDLGLDENLLKGLYAMKFNKP 122
Query 250 --LALPAMK------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+ A+ N I + +G GKT L + P + + + A
Sbjct 123 SKIQEKALPLLLSDPPHNMIGQSQSGTGKTGAFSLTMLS--RVDPNLKAVQCICLAPSRE 180
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V E + E+ Q V + I++ TP + L+K I
Sbjct 181 LARQTLDVVD---EMKKFTDITTHLIVPESTERGQKVTS-QILVGTPGSVAGLLQKKQID 236
Query 362 SLSIFTLMIFDEC 374
+ + + DE
Sbjct 237 AKH-VKVFVLDEA 248
>sp|Q75F95|DRS1_EREGS ATP-dependent RNA helicase DRS1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DRS1 PE=3 SV=1
Length=734
Score = 83.7 bits (205), Expect = 4e-15, Method: Composition-based stats.
Identities = 79/501 (16%), Positives = 169/501 (34%), Gaps = 53/501 (11%)
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
N + S P + GL A++G A I L + A +
Sbjct 214 KNVVHSTFNSLSLSRPVLKGL-AALGYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAA 272
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+ ++ + K+ S + ++ R+ + K L + FG
Sbjct 273 FMIPIIERLLYKPAKIAST-----RVLVLTPTRELAIQVADVGKKLGKF--VSGLTFGLA 325
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD--ALD 565
+ ++A + RI + S + L+I E RM + D
Sbjct 326 VGGLNLRQQEQALKLRPDIVIATPGRIIDHIRNSASFSVDSVEVLVIDEADRMLEDGFQD 385
Query 566 YLKDFFSNVRAAGF---------DEIEQDLTQRFEEKLQELESVSRDPSN---------- 606
L + S + + I+Q ++ ++ ++ + + +N
Sbjct 386 ELNEIMSLIPSKRQTLLFSATMNSRIKQLISLSLKKPVRIMIDPPKQAANKLTQEFVRLR 445
Query 607 --ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
E+ K L +L++ + ++FV + + L+ + L G
Sbjct 446 KREHLKPALLYHLLRK-LDSTGQKRIVVFVARKEVAHRLRVILG------------LLGM 492
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ +T + ++ FK S D +L+ T +A G+DI + +VI Y+
Sbjct 493 KAGELHGSLTQEQRLQSVNNFK-SLDVPVLVCTDLASRGLDIPKIEVVINYDMPKTYEIY 551
Query 725 IQTRGR-GRA-RGSKCFLLTSNA----GVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
+ GR RA R K L + +++ ++ K + R+ W +
Sbjct 552 LHRVGRTARAGREGKSVTLVGESTQERSIVKDAIKSVDGSKGSGRACGRVVDWKQVEEIH 611
Query 779 KILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAF 838
K+ +Q E I + E+ K + ++ RK + + + ++ +
Sbjct 612 KL--VQAKEDVIGEILEEEKQEKEILRAEMEIRKGENMLKFKEEINARPRRTWFQSESEK 669
Query 839 KECFVSRPHPKPKQFSSFEKR 859
K + + K K+ ++ +KR
Sbjct 670 KNSSILQALSKNKKVTNSKKR 690
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 7/198 (4%)
Query 184 ELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL-----Y 238
EL VE G + E + + E + E E +N+ ++ +S L
Sbjct 178 ELDGVEFGDEQEEAREEDTAEEMAQFYAPSNEGEEAKNVVHSTFNSLSLSRPVLKGLAAL 237
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFA 297
KP Q A+ GK+ I A TG GKT ++ L P +V+
Sbjct 238 GYTKPSPIQGATIPIALLGKDVIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVLVLT 297
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLK 356
+ Q V K + G++ EQ ++ DI+I TP ++++++
Sbjct 298 PTRELAIQVADVGKKLGKFVSGLTFGLAVGGLNLRQQEQALKLRPDIVIATPGRIIDHIR 357
Query 357 KGTIPSLSIFTLMIFDEC 374
S+ +++ DE
Sbjct 358 NSASFSVDSVEVLVIDEA 375
>sp|A7EYW0|DBP3_SCLS1 ATP-dependent RNA helicase dbp3 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp3 PE=3 SV=2
Length=596
Score = 83.3 bits (204), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 54/151 (36%), Gaps = 18/151 (12%)
Query 612 EDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
E L ++Y + ++F + ++ +I G
Sbjct 415 EYRLMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQK------------GFRVAGI 462
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQ 726
+ ++ + L+AFK SG+ +L+AT VA G+DI LVI + + I
Sbjct 463 HGDLSQEQRTRSLEAFK-SGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIG 521
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
GR G L T + IN+ K
Sbjct 522 RTGRAGKDGLAITLFTEHDKAQSGALINVLK 552
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 50/123 (41%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHH---LKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ I A TG GKT + C + L K + + + V + + Q
Sbjct 214 LAGRDVIGVAETGSGKTMAFAVPCVRYMSSLPKNQKNKGPRAVVVSPTRELAMQSYEQIV 273
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + G + G ++ + + ++ DI++ TP L N+L LS ++
Sbjct 274 KLAKASGLECVCVYGGVPKDEQI-RALKTADIVVATPGRL-NDLINQGCADLSKARYVVL 331
Query 372 DEC 374
DE
Sbjct 332 DEA 334
>sp|P0CQ92|DRS1_CRYNJ ATP-dependent RNA helicase DRS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DRS1 PE=3 SV=1
Length=808
Score = 83.7 bits (205), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 108/340 (32%), Gaps = 41/340 (12%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
T++ V KA D + +H + ++I+ R+ D L
Sbjct 304 TRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLT 363
Query 566 YLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 624
F S + DE ++ L F ++L+E+ + + E L
Sbjct 364 NTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKL 423
Query 625 NPETITILFVK-TRALVDALKNWIEGNPKLSFLKPGILT--------------------- 662
+ + +FV R L P +L
Sbjct 424 SLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAH 483
Query 663 ---------GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
G + +T + L+ FKA G + L+AT +A G+DI VI
Sbjct 484 QMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKA-GTVDYLLATDLASRGLDIKGVETVI 542
Query 714 LYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG------VIEKEQINMYKEKMMNDSI 765
Y+ G + + GR RA R + L A I++ + + + +++
Sbjct 543 NYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEA 602
Query 766 LRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 805
+ F++ I I EK + ++ + +N
Sbjct 603 VTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQN 642
Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 19/178 (11%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
F+ DP + PS + NL P P Q A+ G++ +
Sbjct 208 FFSSDPTT----TDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDIL 263
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFSKYFERHG 318
A TG GKT ++ L +G+ G +V+ + Q ++V E+ G
Sbjct 264 GSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG 323
Query 319 YRV--TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V + G + N + DI+I TP L+++L +LS +++ DE
Sbjct 324 LDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEA 381
>sp|P0CQ93|DRS1_CRYNB ATP-dependent RNA helicase DRS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DRS1 PE=3 SV=1
Length=808
Score = 83.7 bits (205), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/340 (17%), Positives = 108/340 (32%), Gaps = 41/340 (12%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
T++ V KA D + +H + ++I+ R+ D L
Sbjct 304 TRELAVQCEAVGKALAEKGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLT 363
Query 566 YLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 624
F S + DE ++ L F ++L+E+ + + E L
Sbjct 364 NTPSFTLSALDVLVIDEADRMLEAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKL 423
Query 625 NPETITILFVK-TRALVDALKNWIEGNPKLSFLKPGILT--------------------- 662
+ + +FV R L P +L
Sbjct 424 SLDKPIRVFVDPKRNTARGLTQEFVRIRSDDSRSPSLLALCKRTIREKCIIFFRSKALAH 483
Query 663 ---------GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
G + +T + L+ FKA G + L+AT +A G+DI VI
Sbjct 484 QMRIVFGLFGLKAAELHGNLTQEQRLQALNDFKA-GTVDYLLATDLASRGLDIKGVETVI 542
Query 714 LYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG------VIEKEQINMYKEKMMNDSI 765
Y+ G + + GR RA R + L A I++ + + + +++
Sbjct 543 NYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADRKMLKAAIKQAEADQVRHRIIPSEA 602
Query 766 LRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 805
+ F++ I I EK + ++ + +N
Sbjct 603 VTAMKEKLEEFKDDIQEILKEEKEEKLLRQADMEIKKGQN 642
Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 19/178 (11%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTI 261
F+ DP + PS + NL P P Q A+ G++ +
Sbjct 208 FFSSDPTT----TDPTLPSSFTAMNLSRPLLRALTSLQFTAPTPIQARAIPLALLGRDIL 263
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFSKYFERHG 318
A TG GKT ++ L +G+ G +V+ + Q ++V E+ G
Sbjct 264 GSAVTGSGKTAAFMVPILERLCYRDRGKGGAACRVLVLCPTRELAVQCEAVGKALAEKGG 323
Query 319 YRV--TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V + G + N + DI+I TP L+++L +LS +++ DE
Sbjct 324 LDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTNTPSFTLSALDVLVIDEA 381
>sp|O61305|DDX19_DROME DEAD-box helicase Dbp80 OS=Drosophila melanogaster
OX=7227 GN=Dbp80 PE=1 SV=1
Length=460
Score = 82.5 bits (202), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 62/183 (34%), Gaps = 26/183 (14%)
Query 589 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE 648
R EE L+ ++ NE K + I Y I+F T+ L +
Sbjct 280 REEESLENIKQYYVKCKNEEGKYNAIQNI----YGCISVGQAIIFCHTKRTAAWLAAKMT 335
Query 649 GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 708
+ G +T+ + +LD F+ SG +LI T++ GIDI Q
Sbjct 336 SD------------GHSVAVLTGDLTVVQRLDVLDRFR-SGLEKVLITTNILSRGIDIEQ 382
Query 709 CNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+V+ ++ + I GR G L+T + I + K
Sbjct 383 LQVVVNFDLPVDLDGMADCETYLHRIGRTGRFGKSGIAINLITDEKTMKVCSDIEKHFNK 442
Query 760 MMN 762
+
Sbjct 443 KIE 445
Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 22/186 (12%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L + +V+ + + Q V ++ +
Sbjct 113 QNMIAQSQSGTGKTAAFVLAMLSRVNVCL--NHPQVLCLSPTYELAIQTGEVAAR-MGQF 169
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC--- 374
+ E V + +E + I+I TP L++ K + + ++ + DE
Sbjct 170 CREIKLRFAVRGEEVDRSKKIEEH-ILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVM 228
Query 375 -----HN--TSKQH----PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA 423
H+ + H P+ ++ + G ++I A + +E+
Sbjct 229 IATQGHHDQCIRIHKMLNPHCQML--FFSATYGKEVMDFARLI--VADPTIIRLMREEES 284
Query 424 LDYICK 429
L+ I +
Sbjct 285 LENIKQ 290
>sp|Q2UMH8|DBP3_ASPOR ATP-dependent RNA helicase dbp3 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp3
PE=3 SV=1
Length=498
Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/154 (21%), Positives = 51/154 (33%), Gaps = 17/154 (11%)
Query 608 NPKLEDLCFILQEEYHLNPET-ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
+ K L +L PE + F + ++ + G
Sbjct 313 HEKESRLVQLLNRSQRGVPEPEKVLAFCLYKKEAMRIERLLRTK------------GFKV 360
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIK 723
+ ++ + LDAFK +G +L+AT VA G+DI VI + +
Sbjct 361 AGIHGDLSQQERFRSLDAFK-TGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVH 419
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
I GR A G L T IN+ +
Sbjct 420 RIGRTGRAGAEGHAVTLFTETDKAQSGALINVLR 453
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 17/192 (9%)
Query 188 VEKGIKDVETEDLEDKMET-SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+EK + + + + E I + P C++ + S S T++ S P
Sbjct 57 IEKFLTENSIKITDTSSENVMRPIISFSHLPPCKD-DLYAPLSSFKSPTSIQSATWP--- 112
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG----KVVFFANQIPV 302
L G++ I A TG GKT L C ++ ++ V + +
Sbjct 113 ---LLFA---GRDVIGIAETGSGKTLAFGLPCLKKIQDSAMTKQKPYRPLAVIISPTREL 166
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q K+ G RV + G + E ++ +++ TP L +L+
Sbjct 167 AMQIYDQLLKFSGSVGVRVACVFGGVRKEEQRE-ALKTAGVVVATPGRL-KDLQNDGSVD 224
Query 363 LSIFTLMIFDEC 374
L ++ DE
Sbjct 225 LGKVKYLVLDEA 236
>sp|O25029|RHPA_HELPY DEAD-box ATP-dependent RNA helicase RhpA
OS=Helicobacter pylori (strain ATCC 700392 / 26695) OX=85962
GN=rhpA PE=1 SV=1
Length=492
Score = 82.9 bits (203), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/193 (23%), Positives = 76/193 (39%), Gaps = 23/193 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
NE+ + E + +L +I+F +T+ D L ++ K L G
Sbjct 240 NEHERAEAIMRLLD----TQAPKKSIVFTRTKKEADELHQFLAS----KNYKSTALHG-- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VI 722
M ++ + AFK + D ++L+AT VA G+DI+ + V Y N I
Sbjct 290 ------DMDQRDRRSSIMAFKKN-DADVLVATDVASRGLDISGVSHVFNYHLPLNTESYI 342
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
I GR +G L+T + KE + M KE + + T +E + +
Sbjct 343 HRIGRTGRAGKKGMAITLVTP---LEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHD 399
Query 783 IQTHEKFIRDSQE 795
+ E I ++
Sbjct 400 AKVSEGIISLYEQ 412
Score = 59.4 bits (142), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 7/173 (4%)
Query 204 METSDIQIFYQEDPECQNLSENSCP---PSEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
ME + + + D + + + S + P Q + ++G++
Sbjct 1 MELNQPPLPTEIDGDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV 60
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
I A TG GKT L ++LK + + + Q K + +
Sbjct 61 IAQAQTGTGKTAAFALPIINNLKNNHTIE---ALVITPTRELAMQISDEIFKLGKHTRTK 117
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G + E I +N ++I TP L+++LK I + +++ DE
Sbjct 118 TVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKF-VPKVVVLDE 169
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis
thaliana OX=3702 GN=RH24 PE=1 SV=2
Length=760
Score = 83.7 bits (205), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/149 (25%), Positives = 61/149 (41%), Gaps = 17/149 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E L ++L++ + E ++F +A VD ++ + L+ K L G
Sbjct 458 EKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLT----LNSFKVAALHG-------- 505
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTR 728
++ L FK SG H++LIAT VA G+DI V+ Y+ ++ + I
Sbjct 506 DKDQASRMETLQKFK-SGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRT 564
Query 729 GRGRARGS-KCFLLTSNAGVIEKEQINMY 756
GR R L+T E +N
Sbjct 565 GRAGDRDGVAYTLVTQREARFAGELVNSL 593
Score = 70.2 bits (170), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 10/150 (7%)
Query 234 DTNLYSPFKPRNY------QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP- 286
+ + S K + Y Q + + G++ I A TG GKT +L H+ P
Sbjct 236 SSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPE 295
Query 287 -QGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
Q +G + V A + Q K+ + +G RV+ + G +++ +++ +I+
Sbjct 296 LQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIV 355
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP L++ LK + + + ++ DE
Sbjct 356 VATPGRLIDMLKMKALTMMRA-SYLVLDEA 384
>sp|Q4FZF3|DDX49_MOUSE Probable ATP-dependent RNA helicase DDX49
OS=Mus musculus OX=10090 GN=Ddx49 PE=2 SV=1
Length=480
Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/217 (19%), Positives = 78/217 (36%), Gaps = 22/217 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L ++Q + I+F T L + K +F +
Sbjct 231 KDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLR---KFNFPTVAL--------- 278
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE---YVGNVIKMIQ 726
++ M + L FK+S + ILIAT VA G+DI +VI + I +
Sbjct 279 HSMMKQKERFAALAKFKSS-IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVG 337
Query 727 TRGRGRARGSKCFLLTSNAGVI---EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
R +G L+T + +EQI +++ + LQ + + I
Sbjct 338 RTARAGRQGQAITLVTQYDIHLLHAIEEQIKQQLAELVVEEAEVLQILTQVNVVRRECEI 397
Query 784 QTHEKFIRDSQE---KPKPVPDKENKKLLCRKCKALA 817
+ + +E + + + + ++ L ++ LA
Sbjct 398 KLEASHFDEKKEINKRKQMILEGKDPDLEAKRKAELA 434
Score = 75.6 bits (184), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 50/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P QL ++G++ + CA TG GKT +L L + P G +
Sbjct 24 QPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIF--CLVLTPTRE 81
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q F + G + I G ++ ++I TP L ++L+
Sbjct 82 LAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNTF 141
Query 362 SLSIFTLMIFDEC 374
++ ++ DE
Sbjct 142 NMKKIQFLVMDEA 154
>sp|Q5B5E7|RRP3_EMENI ATP-dependent rRNA helicase rrp3 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) OX=227321 GN=rrp3 PE=3 SV=1
Length=465
Score = 82.5 bits (202), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/279 (15%), Positives = 91/279 (33%), Gaps = 43/279 (15%)
Query 541 YTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV 600
+ L K L + H + A + +++ A + + + L+S
Sbjct 206 FGESLDKIIRILPRTRHTYLFSAT--MSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSS 263
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+++ K L ++L E + I+F T + +
Sbjct 264 YICIPHKH-KNLYLVYLLNEFAGQS----AIIFTTTVHETQRVAFMLRA----------- 307
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV-- 718
G G + ++ A+ L F++ +IL+AT VA G+DI ++V ++
Sbjct 308 -LGFGAIPLHGQLSQSARLGALGKFRSRSR-DILVATDVAARGLDIPSVDVVFNFDLPMD 365
Query 719 -GNVIKMIQTRGRGRARGSKCFLLTSNAGV-----------------IEKEQINMYKEKM 760
I + R G +T +EK+++ + E++
Sbjct 366 SKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKDEVMVMSERV 425
Query 761 M---NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ + ++++DE + QE+
Sbjct 426 AEASRQATIEMKSFDEKKGARGKKFGKGKRSRDDMDQEE 464
Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/286 (18%), Positives = 86/286 (30%), Gaps = 28/286 (10%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK----------PRNYQL 248
+ E + E Q E P + + P Q
Sbjct 15 ETNSDSEAESVSSRGSAKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQS 74
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
+ A++G++ I A TG GKT L L + PQ G V A + Q
Sbjct 75 QAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLV--LAPTRELAYQISQ 132
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
F G R I G + + II+ TP L+++L+ SL
Sbjct 133 AFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKY 192
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYIC 428
+ DE LD G S + +++ T + A ++ +
Sbjct 193 LAIDEA-------------DRLLDMDFGESLDKIIRILPRTRHTYLFSA-TMSTKVESLQ 238
Query 429 KLCASLDASVIATVKHNLEELEQ--VVYKPQKFFRKVESRISDKFK 472
+ S V + K+ Q + P K + ++F
Sbjct 239 RASLSNPVRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEFA 284
>sp|A7EGG4|PRP28_SCLS1 Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /
1980 / Ss-1) OX=665079 GN=prp28 PE=3 SV=1
Length=816
Score = 83.7 bits (205), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/178 (22%), Positives = 71/178 (40%), Gaps = 17/178 (10%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E ++ +E + E+ + + L IL P I+FV + DA+ I+
Sbjct 619 GEAVETVEQRVEFVAGEDKRKKRLNEILASGEFQPP---IIVFVNIKRNCDAVARDIK-- 673
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + SG N+L+AT +A GID+ +
Sbjct 674 ----------HMGFTSVTLHGSKTQEQREAALASVR-SGATNVLVATDLAGRGIDVPDVS 722
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
LV+ + N+ GR R K + + G + + + K+ +M SI R+
Sbjct 723 LVVNFNMATNIESYTHRIGR-TGRAGKSGVAITFLGNEDADTMYDLKQMLMKSSISRV 779
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/252 (19%), Positives = 89/252 (35%), Gaps = 23/252 (9%)
Query 141 QICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELW--IVEKGIKDVETE 198
++ A K + L D E + +E ER + + ++K + + E
Sbjct 292 RLAGFAEDEAATLKYAKALEERDIEAGSARAREIVEMERRRKEDAGRNSLDKHWSEKKLE 351
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQL 248
+ ++ D +IF ++ P S++ L +P Q
Sbjct 352 HMRER----DWRIFKEDFNISTKGGAIPNPMRSWSESKLPKRLLDVINQVGYDEPSAVQR 407
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHH------LKKFPQGQKGKVVFFANQIPV 302
A++ ++ I A TG GKT LL + L +F + + A +
Sbjct 408 AAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTREL 467
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
+Q + K+ G+ I G + + +III TP LV+ +++ +
Sbjct 468 AQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLV- 526
Query 363 LSIFTLMIFDEC 374
L +I DE
Sbjct 527 LGQCCYIIMDEA 538
>sp|Q7S5R1|DBP3_NEUCR ATP-dependent RNA helicase dbp-3 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-3 PE=3 SV=1
Length=614
Score = 83.3 bits (204), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 69/192 (36%), Gaps = 23/192 (12%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
+ G IE R E+K++ + DP + +L +L Q+ +
Sbjct 399 RTRAGGDGEGNGNIELQANSRIEQKVEVV-----DPRGKEFRLYELLKEAQK--GSQKDD 451
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F + ++ ++ G + + + + L+AFK S
Sbjct 452 RILVFCLYKKEAVRVEQFLSRK------------GIKVASIHGDLRQDQRTRSLEAFK-S 498
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G +L+AT VA G+DI + LVI + + I GR G L T +
Sbjct 499 GTTTVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHD 558
Query 746 GVIEKEQINMYK 757
+N+ +
Sbjct 559 KAHSGSLVNILR 570
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 34/131 (26%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--------KGKVVFFANQIPVYEQ 305
++ G++ I A TG GKT L C L P+ + + V + + Q
Sbjct 213 SLSGRDVIGIAETGSGKTMAFSLPCVESLASRPKPKFNSRDRTAHPRAVIVSPTRELAMQ 272
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGTIPSL 363
+ S G I G + +N + +NN DII TP L + L +G+I SL
Sbjct 273 THAALSGLASLVGLSAVCIFGGSDKNEQRNLLYKNNGVDIITATPGRLKDFLSEGSI-SL 331
Query 364 SIFTLMIFDEC 374
+ + + DE
Sbjct 332 ANVSFAVLDEA 342
>sp|D3Z4R1|HFM1_MOUSE Probable ATP-dependent DNA helicase HFM1
OS=Mus musculus OX=10090 GN=Hfm1 PE=3 SV=2
Length=1434
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/173 (23%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSKYFE 315
+N +ICAPTG GKT V L L + P K+V+ A + Q+ + + F
Sbjct 295 DRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNMKIVYMAPIKALCSQRFDDWKEKFG 354
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK----KGTIPSLSIFTLMIF 371
G ++G T + E N III TP+ + + I + L +
Sbjct 355 PVGLNCKELTGDTVMDDLFEIQHAN--IIITTPEKWDSVTRKWRDNSFI---QLVRLFLI 409
Query 372 DECHNTSK--QHPYNMIMFNYLD-----QKLGGSSGPLP-QVIGLTASVGVGD 416
DE H + P ++ + + + S+ P+P + + ++A++ +
Sbjct 410 DEVHVIKDENRGPTLEVVVSRMKTVQSLSRDLESASPVPVRFVAVSATIPNAE 462
Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 35/185 (19%), Positives = 60/185 (32%), Gaps = 31/185 (17%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTR----ALVDALKN----WIEGNPKLSFLKPGILT 662
L + + Y T ++F TR L I KL K
Sbjct 511 LNYKVYSVIRTYSDQKPT--LVFCSTRKGVQQAASVLVKDAKFIISVEQKLRLQKSAYSI 568
Query 663 GRGKTNQ---------NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
K + GM L +K + F SGD +L TS G+++ +VI
Sbjct 569 RDSKLKDTLVYGVGYHHAGMELSDRKLVEGLF-TSGDLPVLFTTSTLAMGMNMPAHLVVI 627
Query 714 L---------YEYVG--NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
+E ++++MI GR + + ++ + EK + +
Sbjct 628 KSTMHYSGGVFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLACNDTVE 687
Query 763 DSILR 767
S+ R
Sbjct 688 SSLHR 692
>sp|Q5ACU6|RRP3_CANAL ATP-dependent rRNA helicase RRP3 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=RRP3
PE=3 SV=3
Length=534
Score = 82.9 bits (203), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 34/178 (19%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVD---ALKNWIEGNPKLSFLKPGILTGRGK 666
K L +L E + I+F +T A L + G
Sbjct 344 KNTILIHLLNEFMGKS----IIVFTRTVAHAQRTALLARIL---------------GFNA 384
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ ++ + L+ FK++ NIL+AT VA G+DI ++VI Y+ + I
Sbjct 385 VPLHGQLSQSQRLGSLNKFKSN-QANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIH 443
Query 727 TRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
GR RA R K +I + + MY + +S+L + E +++L
Sbjct 444 RVGRTARAGRSGKSI------SLITQYDLEMY---LRIESVLGKKLPKEDKPPKEVLD 492
Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 2/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A++GK+ I A TG GKT + L + Q + A
Sbjct 140 KPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSL--WHAQQPYFALVLAPTRE 197
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K F G R + I G ++ +I+ TP ++++L+
Sbjct 198 LAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGF 257
Query 362 SLSIFTLMIFDEC 374
SL ++ DE
Sbjct 258 SLKNLKYLVMDEA 270
>sp|Q9FZ92|RH44_ARATH Putative DEAD-box ATP-dependent RNA helicase
44 OS=Arabidopsis thaliana OX=3702 GN=RH44 PE=5 SV=2
Length=622
Score = 82.9 bits (203), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/191 (19%), Positives = 64/191 (34%), Gaps = 32/191 (17%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+ E+ K L ++ + I+FV TR VD + +E +
Sbjct 452 TKESDKFSRLKKLIDDLGDDKT---AIVFVNTRNKVDYIVKNLEKVGRCRV--------- 499
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---V 721
T + G + + L+ FK N+L+ T V G+DI VI Y+
Sbjct 500 --TTLHAGKSQEQRDYSLEEFKKK-RFNVLVTTDVLGRGLDILDLAQVINYDMPNTMDLY 556
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND---------SILRLQTWD 772
I GR G LT +E + + ++ +N+ + +
Sbjct 557 THRIGRTGRAGKTGVATTFLT-----LEDKDVFYGLKQKLNECNSLVPPELARHEASKFK 611
Query 773 EAVFREKILHI 783
F ++ H
Sbjct 612 PGTFPDRFSHF 622
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 54/126 (43%), Gaps = 7/126 (6%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQQKS 308
++ ++ I + TG GKT +L ++ + P Q + + + Q +
Sbjct 245 LEQRDVIGISATGSGKTAAFVLPMLAYISRLPPMREENQTEGPYALVMVPTRELAHQIEE 304
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ G++ I+G + ++ + +I+I TP L++ L++ + L+
Sbjct 305 ETVKFSRYLGFKAVSITGWESIEKQALKLSQGCEIVIATPGRLLDCLERRYVV-LNQCNY 363
Query 369 MIFDEC 374
++ DE
Sbjct 364 LVLDEA 369
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508
GN=PRP5 PE=3 SV=1
Length=994
Score = 83.7 bits (205), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/202 (21%), Positives = 75/202 (37%), Gaps = 18/202 (9%)
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
L+ V + I ++ E QE+ N K++ L IL + L
Sbjct 582 KLEQLAKKVLHNPIEIIVGGVSVVASEISQEIILFEDTDQLMNHKIQKLEDILSRFFDLG 641
Query 626 PET-ITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
T ++FV+ + D L + + + P ++ + G +K +
Sbjct 642 KNTGKVLVFVEKQTDADKLVSVLLKKAIPCIAI--------------HGGKDQIDRKHAI 687
Query 683 DAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
F N+LIATS+A G+D+ +LV+ +E ++ + GR G +
Sbjct 688 REFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYVHRVGRTGRAGKHGEAI 747
Query 742 TSNAGVIEKEQINMYKEKMMND 763
T EKE + K M+
Sbjct 748 TFVDNTQEKEISILVKALKMSS 769
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/153 (23%), Positives = 64/153 (42%), Gaps = 6/153 (4%)
Query 228 PPSEVSD-TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK-- 284
P S +S N KP Q + + G++ I A TG GKT +L H++
Sbjct 395 PESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQL 454
Query 285 FPQGQKGKV-VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
FP+ +G + + + + Q + K+ +V G + + ++ ++
Sbjct 455 FPKPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLKVCCCYGGSNIENQISELKRGVNV 514
Query 344 IILTPQILVNNLKK--GTIPSLSIFTLMIFDEC 374
I+ TP L++ L G I +L T ++ DE
Sbjct 515 IVATPGRLIDLLAANGGRITTLRRTTFVVLDEA 547
>sp|Q4E162|IF4A_TRYCC Probable eukaryotic initiation factor 4A
OS=Trypanosoma cruzi (strain CL Brener) OX=353153 GN=Tc00.1047053511585.190
PE=3 SV=1
Length=404
Score = 81.8 bits (200), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/158 (18%), Positives = 59/158 (37%), Gaps = 18/158 (11%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
D + + + L +R L+ ++ E+ KL+ L + Y
Sbjct 215 DDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVEEEH-KLDTL----MDLYETVSIA 269
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+++F TR VD L + S + ++ M ++ ++ F+ +
Sbjct 270 QSVIFANTRRKVDWLAQQLNQ----SNHTVSCM--------HSEMPKQDREKVMSTFR-N 316
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G +L+ T + GID+ N+VI ++ N +
Sbjct 317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLH 354
Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/189 (20%), Positives = 66/189 (35%), Gaps = 21/189 (11%)
Query 194 DVETED----LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLE 249
VE +D L+D+ I F + P QNL + KP + Q
Sbjct 6 KVEPQDQDSFLDDQPGIRPIPSFD-DMPLHQNLLR---------GIYSHGFEKPSSIQQR 55
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+P +G + I A +G GKT + L +G V + + Q V
Sbjct 56 AIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLV--LSPTRELALQTAEV 113
Query 310 FSKY----FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
++ E + G T ++ + + + TP +V+ K+G +
Sbjct 114 ITRIGEFLAEGNSSFCATFVGGTRVQDDYRKLQAGSIVAVGTPGRVVDVTKRGAM-RTEH 172
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 173 LRVLVLDEA 181
>sp|Q75BL8|IF4A_EREGS ATP-dependent RNA helicase eIF4A OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=TIF1 PE=3 SV=1
Length=396
Score = 81.8 bits (200), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 17/154 (11%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+V ++ + L ++ L+ ++ + +E K L + Y T ++
Sbjct 211 DVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKY----DCLSDLYDSISVTQAVI 266
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR V+ L + + + + + + I+ F+ +G
Sbjct 267 FCNTRRKVEELTKRLTDDSFTV------------SAIYSDLPQAQRDTIMKEFR-TGSSR 313
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
ILI+T + GID+ Q +LVI Y+ N I
Sbjct 314 ILISTDLLARGIDVQQVSLVINYDLPNNKENYIH 347
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/270 (19%), Positives = 96/270 (36%), Gaps = 22/270 (8%)
Query 236 NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGK 292
Y P Q LP ++G + + A +G GKT ++ L + + +
Sbjct 38 YGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQ-----RIDESIKAPQ 92
Query 293 VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ A + Q + V +V G T E + I++ TP +
Sbjct 93 ALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVF 152
Query 353 NNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLT 409
+ +++ + I DE + ++ + +++ LP QV+ L+
Sbjct 153 DMIERRNF-KTDHIKMFILDEA---------DEMLSSGFKEQIYKIFTMLPPTTQVVLLS 202
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
A++ TD+ ++ ++ DA + ++ +E YK +S IS
Sbjct 203 ATMPKEVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDCLSDLYDS-ISV 261
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQI 499
I R E L KR+ D +S I
Sbjct 262 TQAVIFCNTRRKVEELTKRLTDDSFTVSAI 291
>sp|Q9LFN6|RH56_ARATH DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis
thaliana OX=3702 GN=RH56 PE=1 SV=2
Length=427
Score = 82.1 bits (201), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 40/354 (11%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + + + + L + + E + Y P
Sbjct 94 MGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELA--YQICNEFVRFSTYLPDTKVSVFYG 151
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
++ K + + E + L+ + ++ + +I+ +M
Sbjct 152 GVNIKIHKDLLK----NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD-----KM 202
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + R + +F T H D ++ A + + + F + + E
Sbjct 203 LESLDMRRDVQEIFKMTPH-----DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK 257
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
LT +Q +S +N KL DL L ++FVK+ + L
Sbjct 258 LT--LHGLVQHYIKLSE--MEKNRKLNDLLDALDF-------NQVVIFVKSVSRAAELNK 306
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ ++ ++GM+ + +FK G IL+AT + GID
Sbjct 307 LL--------VECNF----PSICIHSGMSQEERLTRYKSFK-EGHKRILVATDLVGRGID 353
Query 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I + N+VI Y+ + + GR G+K +T A + E +N +E+
Sbjct 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQER 407
Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (38%), Gaps = 7/136 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + I A +G GKT V +L ++ P V +
Sbjct 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALV--LCHTRE 125
Query 302 VYEQQKSVF-SKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKG 358
+ Q + F +V+ G + + +++N I++ TP ++ L +
Sbjct 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVL-ALARE 183
Query 359 TIPSLSIFTLMIFDEC 374
SL I DEC
Sbjct 184 KDLSLKNVRHFILDEC 199
>sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis
thaliana OX=3702 GN=RH15 PE=1 SV=3
Length=427
Score = 82.1 bits (201), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/354 (17%), Positives = 121/354 (34%), Gaps = 40/354 (11%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + + + + L + + E + Y P
Sbjct 94 MGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELA--YQICNEFVRFSTYLPDTKVSVFYG 151
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
++ K + + E + L+ + ++ + +I+ +M
Sbjct 152 GVNIKIHKDLLK----NECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECD-----KM 202
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + R + +F T H D ++ A + + + F + + E
Sbjct 203 LESLDMRRDVQEIFKMTPH-----DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK 257
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
LT +Q +S +N KL DL L ++FVK+ + L
Sbjct 258 LT--LHGLVQHYIKLSE--MEKNRKLNDLLDALDF-------NQVVIFVKSVSRAAELNK 306
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ ++ ++GM+ + +FK G IL+AT + GID
Sbjct 307 LL--------VECNF----PSICIHSGMSQEERLTRYKSFK-EGHKRILVATDLVGRGID 353
Query 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I + N+VI Y+ + + GR G+K +T A + E +N +E+
Sbjct 354 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQER 407
Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 51/136 (38%), Gaps = 7/136 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + I A +G GKT V +L ++ P V +
Sbjct 68 HPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALV--LCHTRE 125
Query 302 VYEQQKSVF-SKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKG 358
+ Q + F +V+ G + + +++N I++ TP ++ L +
Sbjct 126 LAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVL-ALARE 183
Query 359 TIPSLSIFTLMIFDEC 374
SL I DEC
Sbjct 184 KDLSLKNVRHFILDEC 199
>sp|B9XXL6|RHPA_HELP8 DEAD-box ATP-dependent RNA helicase RhpA
OS=Helicobacter pylori (strain B128) OX=544406 GN=rhpA PE=1
SV=1
Length=492
Score = 82.5 bits (202), Expect = 6e-15, Method: Composition-based stats.
Identities = 44/193 (23%), Positives = 76/193 (39%), Gaps = 23/193 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
NE+ + E + +L +I+F +T+ D L ++ K L G
Sbjct 240 NEHERAEAIMRLLD----TQAPKKSIVFTRTKKEADELHQFLAS----KNYKSTALHG-- 289
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VI 722
M ++ + AFK + D ++L+AT VA G+DI+ + V Y N I
Sbjct 290 ------DMDQRDRRASIMAFKKN-DADVLVATDVASRGLDISGVSHVFNYHLPLNTESYI 342
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
I GR +G L+T + KE + M KE + + T +E + +
Sbjct 343 HRIGRTGRAGKKGMAITLVTP---LEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHD 399
Query 783 IQTHEKFIRDSQE 795
+ E I ++
Sbjct 400 AKVSEGIISLYEQ 412
Score = 59.8 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 7/173 (4%)
Query 204 METSDIQIFYQEDPECQNLSENSCP---PSEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
ME + + + D + + + S + P Q + ++G++
Sbjct 1 MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV 60
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
I A TG GKT L ++LK + + + Q K + +
Sbjct 61 IAQAQTGTGKTAAFALPIINNLKNNHTIE---ALVITPTRELAMQISDEIFKLGKHTRTK 117
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G + E I +N ++I TP L+++LK I + +++ DE
Sbjct 118 TVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKF-VPKVVVLDE 169
>sp|A3BT52|RH29_ORYSJ DEAD-box ATP-dependent RNA helicase 29 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0416100 PE=2
SV=2
Length=851
Score = 83.3 bits (204), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/242 (17%), Positives = 87/242 (36%), Gaps = 19/242 (8%)
Query 537 ALFLYTSHLRKYNDALI-ISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+++ +D L +S+ + L ++ AG + + ++
Sbjct 204 DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISP 263
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+L+ E KL L ++++E ++ E TI+FV T+ V+ L
Sbjct 264 DLKLAFFTLRQE-EKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE----- 315
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
G + M A+ + F+A ILI T VA G+DI + V+ +
Sbjct 316 -------GLEPSLSYGAMDQEARNIHISKFRAR-KTMILIVTDVAARGLDIPLLDNVVNW 367
Query 716 EYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
++ + GR R R + ++ + ++++ K + + + +
Sbjct 368 DFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTEEELLKD 427
Query 774 AV 775
Sbjct 428 ME 429
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 0/120 (0%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + A TG GKT L+ L++ G + + + + Q +
Sbjct 84 LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG 143
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ +++ I G + E++ EN DIII TP LV++L + +L ++FDE
Sbjct 144 KFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEA 203
>sp|A2YV85|RH29_ORYSI DEAD-box ATP-dependent RNA helicase 29 OS=Oryza
sativa subsp. indica OX=39946 GN=OsI_028228 PE=2 SV=2
Length=851
Score = 83.3 bits (204), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/242 (17%), Positives = 87/242 (36%), Gaps = 19/242 (8%)
Query 537 ALFLYTSHLRKYNDALI-ISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+++ +D L +S+ + L ++ AG + + ++
Sbjct 204 DSLFSLGLIQQLHDILHKLSDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISP 263
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+L+ E KL L ++++E ++ E TI+FV T+ V+ L
Sbjct 264 DLKLAFFTLRQE-EKLAALLYLVRE--RISSEEQTIIFVSTKHHVEFLNILFREE----- 315
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
G + M A+ + F+A ILI T VA G+DI + V+ +
Sbjct 316 -------GLEPSLSYGAMDQEARNIHISKFRAR-KTMILIVTDVAARGLDIPLLDNVVNW 367
Query 716 EYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
++ + GR R R + ++ + ++++ K + + + +
Sbjct 368 DFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMAYLLDLHLFLSKPLRPAPTEEELLKD 427
Query 774 AV 775
Sbjct 428 ME 429
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 0/120 (0%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + A TG GKT L+ L++ G + + + + Q +
Sbjct 84 LAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLG 143
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ +++ I G + E++ EN DIII TP LV++L + +L ++FDE
Sbjct 144 KFTDLKISLIVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEA 203
>sp|A7TJM9|DRS1_VANPO ATP-dependent RNA helicase DRS1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DRS1 PE=3 SV=1
Length=752
Score = 82.9 bits (203), Expect = 6e-15, Method: Composition-based stats.
Identities = 45/265 (17%), Positives = 96/265 (36%), Gaps = 27/265 (10%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L F L + + ++FV + + L+ + L G +
Sbjct 465 ALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILG------------LLGMKVGELHGS 512
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
+T + ++ FK S + +LI T +A G+DI + +VI ++ + + GR
Sbjct 513 LTQEQRLQSVNNFK-SLEVPVLICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTA 571
Query 732 RA-RGSKCFLLT---SNAGVIEKEQINMYKE-KMMNDSILRLQTWDEAVFREKILHI--- 783
RA R + S I + I +E N ++ R W + K++
Sbjct 572 RAGREGRSVTFVGESSQDRSIVRSAIKSVEESSSKNKAVSRNVEWTQIEETNKLVESFGE 631
Query 784 QTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFV 843
+ + + QEK + ++ RK + + + +++ + + K +
Sbjct 632 TIDDILVEEKQEK-----EILRAEMQLRKGENMIKHKKEIQSRPKRTWFQSEAEKKNAKI 686
Query 844 SRPHPKPKQFSSFEKRAKIFCARQN 868
K K+ + +KR ++ N
Sbjct 687 LDTLQKNKKTVNSKKRKRLEALEDN 711
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 2/122 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSKY 313
+ GK+ I A TG GKT ++ L P +V+ + Q V K
Sbjct 266 LSGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQIADVGKKI 325
Query 314 FERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G++ EQ ++ DI+I TP +++++ + ++ +++ D
Sbjct 326 GKYVSGLTFGLAVGGLNLRQQEQELKTRPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMD 385
Query 373 EC 374
E
Sbjct 386 EA 387
>sp|Q7FGZ2|RH1_ARATH DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis
thaliana OX=3702 GN=RH1 PE=2 SV=3
Length=522
Score = 82.1 bits (201), Expect = 7e-15, Method: Composition-based stats.
Identities = 57/322 (18%), Positives = 99/322 (31%), Gaps = 39/322 (12%)
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
+ +I T K + + Y P + +ES + D +LM + + L
Sbjct 149 SQLIKTPKLDAG----ICYDPDDLSQNLESAV-DILVATPGRLMDHINNTKGFTLEHLRY 203
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
L + + Y+ W+ TV + + + F +R+ +
Sbjct 204 LVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFK 263
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
+ L + + + + L SR KLE L
Sbjct 264 GKPYPRLVKMVLSATLT-------QDPSKLIQLDLHHPLFMTTGGSRY--RLPEKLECLR 314
Query 616 FI---------LQEEYHLNPETITILFVKTRALVDALKNWIE--GNPKLSFLKPGILTGR 664
I L I+F + L + G+PK+
Sbjct 315 LICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIK---------- 364
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ G+ + L AF+ GD +L+A+ G+D+ VI Y+
Sbjct 365 -AKEYSGGLNQSLRSKELKAFR-KGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTF 422
Query 725 IQTRGR-GRA-RGSKCFLLTSN 744
I GR RA + +CF L SN
Sbjct 423 IHRAGRTARAGQAGRCFTLLSN 444
Score = 53.2 bits (126), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/168 (18%), Positives = 54/168 (32%), Gaps = 38/168 (23%)
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
PTG GKT L L P + + + + Q K VF G V
Sbjct 80 PTGSGKTLSYALPIVQLLASRP-VRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSA 138
Query 325 SGATAENVPVEQIVEN---------------------NDIIILTPQILVNNLKKGTIPSL 363
G ++ + Q+++ DI++ TP L++++ +L
Sbjct 139 VGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTL 198
Query 364 SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
++ DE + ++ LP V+ LT +
Sbjct 199 EHLRYLVVDE---------TDRLLREAYQS-------WLPTVLQLTQT 230
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis
thaliana OX=3702 GN=RH42 PE=1 SV=2
Length=1166
Score = 83.3 bits (204), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/157 (18%), Positives = 61/157 (39%), Gaps = 20/157 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI--EGNPKLSFLKPGILTG 663
P+ + +L+ + + ++FV+++ DAL + P LS
Sbjct 755 EVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSL-------- 806
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---N 720
+ G ++ + FK N+LIATSVA G+D+ + LV+ ++ +
Sbjct 807 ------HGGKDQTDRESTISDFKND-VCNLLIATSVAARGLDVKELELVVNFDAPNHYED 859
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ + GR +G ++ + + + +
Sbjct 860 YVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 896
Score = 81.4 bits (199), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/191 (21%), Positives = 79/191 (41%), Gaps = 6/191 (3%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQL 248
K I + E++ + ++++ ++ P + S++ DT ++ P Q
Sbjct 498 KDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQT 557
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQ 305
+ M G++ I A TG GKT +L H+K P G + A + +Q
Sbjct 558 QALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQ 617
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPSL 363
S K+ + G R + G + + ++ +I++ TP +++ L G I +L
Sbjct 618 IHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNL 677
Query 364 SIFTLMIFDEC 374
T ++ DE
Sbjct 678 RRVTFLVMDEA 688
>sp|A7ESL7|DBP10_SCLS1 ATP-dependent RNA helicase dbp10 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp10 PE=3 SV=2
Length=920
Score = 82.9 bits (203), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/249 (18%), Positives = 82/249 (33%), Gaps = 30/249 (12%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHL--------------RKYNDALIISEHAR 559
V +A +F+M + I AL + L R +
Sbjct 236 VVFDEADRLFEMGFAAQLGEILHALPISRQTLLFSATLPKSLVEFARAGLQEPSLVRLDA 295
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L+ F +V+ A + + Q + L + + ++ K
Sbjct 296 ESKVSPDLQSAFFSVKGAEKEGALLHILQDLVKMPTGLPENALNATDNFSKKRKRGPDGP 355
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ E TI+F T+ VD L + + ++G ++ + A+
Sbjct 356 TKKLKPTEHSTIIFAATKHHVDYLASLLR------------MSGFAVSHAYGSLDQTARN 403
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGS 736
++ F+ +G NIL+ T VA GIDI VI Y++ + G R RG
Sbjct 404 IQVEDFR-TGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGW 462
Query 737 KCFLLTSNA 745
L+
Sbjct 463 SYSLVRDTD 471
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 45/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ + A TG GKT ++ L+ + + + + Q V ++
Sbjct 123 LDNQDVVGMARTGSGKTAAFVIPMIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFG 182
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 183 RGTDLKCVLLVGGDSLEEQFGFMAANPDIVIATPGRFLH-LKVEMSLDLSSMKYVVFDEA 241
>sp|P25888|RHLE_ECOLI ATP-dependent RNA helicase RhlE OS=Escherichia
coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Length=454
Score = 81.8 bits (200), Expect = 8e-15, Method: Composition-based stats.
Identities = 55/328 (17%), Positives = 121/328 (37%), Gaps = 35/328 (11%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQW 512
R+ ++ + +I R+ LA +I +++ + S+ N FG
Sbjct 62 HLITRQPHAKGRRPVRALILTPTRE---LAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
Query 513 IVTVQKACMVF-QMPDKDEESRICKALFLYTSHLRKYNDA---LIISEHARMKDALDYLK 568
++ ++ V P + + A+ L + ++A L + ++ L L
Sbjct 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
Query 569 DFFSNVR-AAGFDEIEQDLTQRFEEKLQELE----SVSRDPSNENPKL---EDLCFILQE 620
N+ +A F + + L ++ E+E + + D ++ + +L
Sbjct 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
++F +T+ + L + + G + + A+
Sbjct 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKD------------GIRSAAIHGNKSQGARTR 286
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSK 737
L FK SGD +L+AT +A G+DI + V+ YE + + I GR A G
Sbjct 287 ALADFK-SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEA 345
Query 738 CFLLTSNAGVIEKEQINMYKEKMMNDSI 765
L+ + + ++ + K+++ +I
Sbjct 346 LSLVCVDEHKLLRDIEKLLKKEIPRIAI 373
Score = 70.2 bits (170), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/137 (20%), Positives = 52/137 (38%), Gaps = 5/137 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----VVFFA 297
+P Q + ++G++ + A TG GKT L HL KG+ +
Sbjct 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q Y + R + G + N + ++ D+++ TP L++ L+
Sbjct 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLD-LEH 141
Query 358 GTIPSLSIFTLMIFDEC 374
L +++ DE
Sbjct 142 QNAVKLDQVEILVLDEA 158
>sp|Q8P4D4|RHLB_XANCP ATP-dependent RNA helicase RhlB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / DSM 3586
/ NCPPB 528 / LMG 568 / P 25) OX=190485 GN=rhlB PE=3 SV=1
Length=573
Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 107/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + P E+
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P ++ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETETITAARVRQRIYFPSD----------EEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAR 422
>sp|B0RWT6|RHLB_XANCB ATP-dependent RNA helicase RhlB OS=Xanthomonas
campestris pv. campestris (strain B100) OX=509169 GN=rhlB
PE=3 SV=1
Length=573
Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 107/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + P E+
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P ++ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETETITAARVRQRIYFPSD----------EEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAR 422
>sp|Q4UPY5|RHLB_XANC8 ATP-dependent RNA helicase RhlB OS=Xanthomonas
campestris pv. campestris (strain 8004) OX=314565 GN=rhlB
PE=3 SV=1
Length=573
Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 107/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + P E+
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P ++ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETETITAARVRQRIYFPSD----------EEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVGTIFREAR 422
>sp|Q3BNH8|RHLB_XANC5 ATP-dependent RNA helicase RhlB OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) OX=316273 GN=rhlB
PE=3 SV=1
Length=573
Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 108/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + + P E+
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 61/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P ++ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETESITAARVRQRIYFPSD----------EEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAR 422
>sp|P32892|DRS1_YEAST ATP-dependent RNA helicase DRS1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DRS1
PE=1 SV=2
Length=752
Score = 82.9 bits (203), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/219 (18%), Positives = 70/219 (32%), Gaps = 29/219 (13%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L F L + + ++FV + L I G L G +
Sbjct 465 ALLFNLIRKLDPTGQKRIVVFVARKETAHRL-RIIMG-----------LLGMSVGELHGS 512
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
+T + ++ FK + +LI T +A G+DI + +VI Y+ + + GR
Sbjct 513 LTQEQRLDSVNKFKNL-EVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTA 571
Query 732 RA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV--------------F 776
RA R + + K N S+ + + V
Sbjct 572 RAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESM 631
Query 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKA 815
+ I I EK ++ + EN ++ +A
Sbjct 632 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQA 670
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 58/157 (37%), Gaps = 2/157 (1%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
+N + S + KP Q A+ GK+ I A TG GKT ++
Sbjct 231 ENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII 290
Query 280 HHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
L P +V+ + Q V + G++ EQ++
Sbjct 291 ERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQML 350
Query 339 ENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ DI+I TP +++++ ++ +++ DE
Sbjct 351 KSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEA 387
>sp|A7A0P8|DRS1_YEAS7 ATP-dependent RNA helicase DRS1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DRS1 PE=3 SV=1
Length=754
Score = 82.9 bits (203), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/219 (18%), Positives = 70/219 (32%), Gaps = 29/219 (13%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L F L + + ++FV + L I G L G +
Sbjct 467 ALLFNLIRKLDPTGQKRIVVFVARKETAHRL-RIIMG-----------LLGMSVGELHGS 514
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
+T + ++ FK + +LI T +A G+DI + +VI Y+ + + GR
Sbjct 515 LTQEQRLDSVNKFKNL-EVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTA 573
Query 732 RA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV--------------F 776
RA R + + K N S+ + + V
Sbjct 574 RAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESM 633
Query 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKA 815
+ I I EK ++ + EN ++ +A
Sbjct 634 NDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQA 672
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 58/157 (37%), Gaps = 2/157 (1%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
+N + S + KP Q A+ GK+ I A TG GKT ++
Sbjct 233 ENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPII 292
Query 280 HHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
L P +V+ + Q V + G++ EQ++
Sbjct 293 ERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQML 352
Query 339 ENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ DI+I TP +++++ ++ +++ DE
Sbjct 353 KSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEA 389
>sp|A1A4H6|DDX27_BOVIN Probable ATP-dependent RNA helicase DDX27
OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1
Length=765
Score = 82.5 bits (202), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/210 (19%), Positives = 67/210 (32%), Gaps = 37/210 (18%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
I+ +LF +T+ + + L G + ++
Sbjct 422 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLG------------LMGLQVGELHGNLSQT 469
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRA 733
+ L FK +IL+AT VA G+DI VI + + + G R
Sbjct 470 QRLEALRRFKDE-QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 528
Query 734 RGSKCFLLTSNAGVIEKEQINMYK--------------------EKMMNDSILRLQTW-D 772
G L+ + KE + K EKM D LQ +
Sbjct 529 AGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAE 588
Query 773 EAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
E ++ I T ++ + +E P P P+
Sbjct 589 EKEMQKSEAQINTAQRLLEKGKEAPNPEPE 618
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 82/256 (32%), Gaps = 11/256 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIPVYEQQKSVFSKY 313
+ GK+ CA TG GKT L L P+ +V+ + Q SV +
Sbjct 222 LLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQL 281
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G + DI+I TP L+++L LS ++I DE
Sbjct 282 AQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDE 341
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA------LDYI 427
++ + M + ++ + T + V D + ++
Sbjct 342 ADRMLDEY-FEEQMKEII--RMCSHHRQTM-LFSATMTDEVKDLASVSLKNPVRIFVNSN 397
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+ L I + + E +V + + K ++ +
Sbjct 398 TDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMGL 457
Query 488 RICKDLENLSQIQNRE 503
++ + NLSQ Q E
Sbjct 458 QVGELHGNLSQTQRLE 473
>sp|Q2GUI4|DBP3_CHAGB ATP-dependent RNA helicase DBP3 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP3 PE=3 SV=1
Length=566
Score = 82.1 bits (201), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/182 (19%), Positives = 66/182 (36%), Gaps = 25/182 (14%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
+ G E R E+K++ ++ K + L +L+E + +
Sbjct 401 RTRAGEEGEGNGSTELQANIRIEQKVEVVDP--------RGKEQRLLELLKEAQKGSAKN 452
Query 629 -ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
++F + ++ +E G + + + + L++FKA
Sbjct 453 DRILVFCLYKKEAVRVEQNLERR------------GIRVCSIHGDLRQDQRTRSLESFKA 500
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSN 744
G ++L+AT VA G+DI + LVI + + I GR +G L T +
Sbjct 501 -GTTSVLVATDVAARGLDIPEVKLVINVTFPLTIEDYVHRIGRTGRAGKKGKAITLFTEH 559
Query 745 AG 746
Sbjct 560 DK 561
Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats.
Identities = 38/158 (24%), Positives = 60/158 (38%), Gaps = 12/158 (8%)
Query 228 PPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 286
P S ++ ++ F P Q A+ G++ I A TG GKT + C L P
Sbjct 188 PTSTLTSKKPFASFTAPTPIQAASWPFALSGRDVIGIAETGSGKTMAFAVPCIESLASSP 247
Query 287 QGQKGK--------VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
+ K V + + Q + S G V + G ++ +
Sbjct 248 KPNHAKGDRTAYARAVVVSPTRELAMQTHAAMSSLASLVGLSVVCLYGGAPKDDQRALLR 307
Query 339 ENN--DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+N+ DII+ TP L + L +G SLS + DE
Sbjct 308 KNSGADIIVATPGRLKDFLSEG-CVSLSDVMFAVLDEA 344
>sp|A3GHW9|ROK1_PICST ATP-dependent RNA helicase ROK1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=ROK1 PE=3 SV=1
Length=558
Score = 82.1 bits (201), Expect = 9e-15, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 70/207 (34%), Gaps = 21/207 (10%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
R + + + + + + R E ++ +E KL +
Sbjct 301 KIRKSMFSATIPSGVEEMAHSIMRDPIRVIIGRKEAASNTIDQKLVFTGSEEGKLLAIRQ 360
Query 617 ILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
++QE P I+F+++ AL + + + + T
Sbjct 361 MIQEGEFKPP---IIIFLQSIHRAKALFHELLYDKLNVDVI-------------HAERTP 404
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGR 732
++ ++ FK +GD +LI T V G+D N+VI Y+ + I GRG
Sbjct 405 KQREEVIKRFK-NGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGG 463
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEK 759
G T K IN+ K+
Sbjct 464 KAGRAVTFFTKEDDQAVKPIINVMKQS 490
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 73/197 (37%), Gaps = 12/197 (6%)
Query 184 ELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-K 242
E+ VE IK + + E + I Q++ S++ L + F +
Sbjct 88 EIQTVEDSIKLRKANHSKVTGEDIPLPIG-----SFQDMIGRFRLDSKLLSNLLEAEFVE 142
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFAN 298
P Q E ++ G++ I CAPTG GKT L+ L +G+ + +
Sbjct 143 PTAIQCESLPISLSGRDLIACAPTGSGKTLAFLIPLIQSLLVSSKGRPKNYGITGLVISP 202
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENNDIIILTPQILVNNLKK 357
+ Q V +S A + + + DII+ TP L++ +K
Sbjct 203 TNELAIQIFQELQILTRGKKLNVAILSKQLANKLNNDIVKASKYDIIVSTPLRLIDIVKN 262
Query 358 GTIPSLSIFTLMIFDEC 374
+ LS ++ DE
Sbjct 263 EKVD-LSKVEQLVIDEA 278
>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A
OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431
GN=Tb09.160.3270 PE=3 SV=1
Length=404
Score = 81.0 bits (198), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/158 (18%), Positives = 60/158 (38%), Gaps = 18/158 (11%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
D + + + L +R L+ ++ E+ KL+ L + Y
Sbjct 215 DDVLELTKKFMRDPTRILVKRESLTLEGIKQFFIAVEEEH-KLDTL----MDLYETVSIA 269
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+++F TR VD W+ S + ++ M+ ++ ++ F+ +
Sbjct 270 QSVIFANTRRKVD----WLASQLNSSNHTVSCM--------HSEMSKQEREKVMGTFR-N 316
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G +L+ T + GID+ N+VI ++ N +
Sbjct 317 GSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 354
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/189 (20%), Positives = 64/189 (34%), Gaps = 21/189 (11%)
Query 194 DVETED----LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLE 249
VE +D L+D+ I F + P QNL + KP + Q
Sbjct 6 KVEPQDQDSFLDDQPGIRPIPSFD-DMPLHQNLLR---------GIYSHGFEKPSSIQQR 55
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+P +G + I A +G GKT + L +G V + + Q V
Sbjct 56 AIVPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNVLQGLV--LSPTRELAMQTAEV 113
Query 310 FSKY----FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
++ E G T ++ + + TP +V+ K+G +
Sbjct 114 ITRIGEFLAEGSSSFCATFVGGTRVQDDYRKLQSGTIVAVGTPGRVVDVTKRGAM-RTES 172
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 173 LRVLVLDEA 181
>sp|Q4L7W0|CSHA_STAHJ DEAD-box ATP-dependent RNA helicase CshA
OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808
GN=cshA PE=3 SV=1
Length=503
Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/346 (17%), Positives = 132/346 (38%), Gaps = 37/346 (11%)
Query 478 LMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKA----CMVFQMPDKD 529
++ T LA ++ + L S+ QN + FG ++ I +++
Sbjct 74 ILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDH 133
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL--KDFFSNVRAAGFDEIEQDLT 587
R K ++T L + ++ + + M+ +D + + + + +A + Q L
Sbjct 134 LNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQTLV 193
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET---------ITILFVKTRA 638
Q+F + Q ++ + + +P++++ I++E + T + I+F +T+
Sbjct 194 QQFMKSPQIVK--TMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQPELAIVFGRTKR 251
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
VD L + + G + +T + +L FK +IL+AT
Sbjct 252 RVDELTSALLSK------------GYKAEGLHGDITQAKRLEVLKKFKND-QIDILVATD 298
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
VA G+DI+ + V ++ + GR R K + + IE + I ++
Sbjct 299 VAARGLDISGVSHVYNFDIPQDTESYTHRIGR-TGRAGKEGIAVTFVNPIEMDYIRQIED 357
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEK--FIRDSQEKPKPVPD 802
+ V + + I+ K R+S+ + K +
Sbjct 358 SNGRRMNALRPPHRKEVLKAREDDIKDKVKNWMSRESEARLKRISS 403
Score = 56.7 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 57/155 (37%), Gaps = 4/155 (3%)
Query 220 QNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE 279
QN E V +P Q + ++GK+ + A TG GKT +
Sbjct 2 QNFKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPL- 60
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
++K + + A + Q ++ +V + G + ++ +
Sbjct 61 --IEKVVGQSGVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKR 118
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP ++++L + T+ + +I DE
Sbjct 119 GPQIVVGTPGRVIDHLNRRTL-KTNGIHTLILDEA 152
>sp|Q6BTL5|DRS1_DEBHA ATP-dependent RNA helicase DRS1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DRS1 PE=3 SV=1
Length=771
Score = 82.5 bits (202), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/222 (18%), Positives = 80/222 (36%), Gaps = 25/222 (11%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L F L + + + ++FV + L+ + L G + +
Sbjct 493 ALLFQLIKSVDPSQQNRIVVFVARKESAHKLRIILG------------LLGMRVSELHGS 540
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
+T + ++ FK +LI T +A G+DI + +VI Y+ + GR
Sbjct 541 LTQEQRLASVNDFKNL-TVPVLICTDLAARGLDIPKIEIVINYDMPKTHEIYLHRVGRTA 599
Query 732 RA-RGSKCFLLT---SNAGVIEKEQINMYKEKMMN-----DSILRLQTWDEAVFREKILH 782
RA R K + I K+ I E+ ++ R W E KI
Sbjct 600 RAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGKAVSRNVDWKEVEELNKI-- 657
Query 783 IQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR 824
+++ I + ++ K + + ++ K + + +++
Sbjct 658 VESKATVIEEVLDEEKQAKEMLHAEMELSKATNMIKHEKEIQ 699
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 69/452 (15%), Positives = 149/452 (33%), Gaps = 28/452 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSK 312
A+ GK+ + A TG GKT ++ L P +V+ A + Q V K
Sbjct 292 ALLGKDIVAGAVTGSGKTAAYMIPIIERLLYKPAKISSTRVIVLAPTRELAIQVCDVGKK 351
Query 313 YFERHGYRVTGI-SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G+ G +Q+ DI+I TP L+++++ S+ +++
Sbjct 352 IGQFVNNLNFGLAVGGLNLRQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSIDSLEVLVI 411
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ----VIGLTASVGVGDAKNTDEALDYI 427
DE + ++ +L +P+ + +A++ +L
Sbjct 412 DEA---------DRMLDEGFQAELTEILSLIPRHKRQTLLYSATMNTKIQDLIQLSLQKP 462
Query 428 CKLCASLDASVIATVKHNLEELEQVVY-KPQKFFRKVESRISDKFKYIIAQLMRDTESLA 486
++ S + + + + KP F+ ++S + I+ + R +
Sbjct 463 VRVMIDPPKSAAIKLVQEFVRIRKRDHLKPALLFQLIKSVDPSQQNRIVVFVARKESAHK 522
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR---ICKALFLYTS 543
RI L + + TQ+ V K V + D +R I K +
Sbjct 523 LRIILGLLGMRVSELHGSLTQEQRLASVNDFKNLTVPVLICTDLAARGLDIPKIEIVINY 582
Query 544 HLRKYNDALIISEHARMKDALDYLKD-FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR 602
+ K ++ + R A K F ++ + EE+ + +
Sbjct 583 DMPKTHEIYL-HRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGKA 641
Query 603 DPSNENPK-LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
N + K +E+L I++ + + E + + + + L +E + + +K
Sbjct 642 VSRNVDWKEVEELNKIVESKATVIEEVLD----EEKQAKEMLHAEMELSKATNMIKHEKE 697
Query 662 TGRGKTNQ--NTGMTLPAQKCILDAFKASGDH 691
+ Q ++ G
Sbjct 698 IQSRPRRTWFESEKDKKHQTEVMQQLTKHGKK 729
>sp|Q8PFZ3|RHLB_XANAC ATP-dependent RNA helicase RhlB OS=Xanthomonas
axonopodis pv. citri (strain 306) OX=190486 GN=rhlB PE=3
SV=1
Length=571
Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 108/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + + P E+
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPSDEE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 61/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P ++ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETESITAARVRQRIYFPSD----------EEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGEEADDDAGDSVGTIFREAR 422
>sp|A4R8G3|DBP8_PYRO7 ATP-dependent RNA helicase DBP8 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP8 PE=3 SV=3
Length=579
Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 15/187 (8%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
N E I+FV + L + + T+ ++ + + L
Sbjct 401 NTERSIIIFVNRTSTAQFLHHLLRLLDHRV------------TSLHSKLRQQQRIDNLGR 448
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
F+AS IL+AT VA G+DI + ++V+ Y+ + I GR RA R +
Sbjct 449 FRAS-AARILVATDVASRGLDIPEVSVVVNYDLPRDPDDYIHRVGRTARAGRKGEAVNFV 507
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
V I + M + V R+ + + ++ + E+ + V
Sbjct 508 GQRDVELVLAIEKRVGRPMEKWEEEGVNLETRVIRDSLKLVSEKKREALLNIEENREVGG 567
Query 803 KENKKLL 809
+ ++ L
Sbjct 568 RRKRQKL 574
Score = 56.7 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/187 (18%), Positives = 60/187 (32%), Gaps = 6/187 (3%)
Query 192 IKDVETED-LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL 250
+ D E ED ++ + + + + P V + +P Q
Sbjct 119 VTDAEMEDAVQSVAQAAGKKRILAPTDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGC 178
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+KG++ I + TG GKT + + P V + Q F
Sbjct 179 IGEILKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFA--VVLTATRELALQIYEQF 236
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFT 367
H + I G + + + I+I TP L ++++ TI L
Sbjct 237 KAVSSPHVLKAALIIGGSDMRSQAIALAQRPSIVIATPGRLADHIRSSGEDTICGLRRVK 296
Query 368 LMIFDEC 374
++ DE
Sbjct 297 FLVLDEA 303
>sp|Q5UYM9|HELS_HALMA ATP-dependent DNA helicase Hel308 OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966
/ VKM B-1809) OX=272569 GN=hel308 PE=3 SV=1
Length=799
Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/207 (19%), Positives = 84/207 (41%), Gaps = 31/207 (15%)
Query 221 NLSENSCPPSEVSD-------TNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTF 272
++++ P + D LY P Q E + +G+N + PT GKT
Sbjct 2 DVADLPGVPEWLPDHLRDDGIEELYPP------QAEAVEAGVTEGENLVASIPTASGKTL 55
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
++ L + + GK ++ + ++++ F + FE++G + +G
Sbjct 56 IAELAMLSSV-----ARGGKALYIVPLRALASEKQADF-EEFEQYGLDIGVSTGNYESEG 109
Query 333 PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK--QHPYNMIMFNY 390
+ + DI++ T + + ++L + P + T ++ DE H + P +
Sbjct 110 GW---LADKDIVVATSEKV-DSLVRNDAPWIEDLTCVVTDEVHLVDDGERGPTLEVTLAK 165
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDA 417
L + P Q + L+A++G +A
Sbjct 166 LRRL-----NPDLQTVALSATIGNAEA 187
>sp|Q09719|DBP10_SCHPO ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp10
PE=1 SV=1
Length=848
Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/349 (19%), Positives = 112/349 (32%), Gaps = 37/349 (11%)
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDAS--VIATVKHNLEELEQVVYKPQKFFRK 462
V+G+ G K + I L ++L S + N E Q V + F +
Sbjct 109 VVGM---ARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKG 165
Query 463 VESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
+ R + + S I E + V +A +
Sbjct 166 TDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRL 225
Query 523 FQMPDKDEESRICKALFLYTSHLR---------------KYNDALIISEHARMKDALDYL 567
F+M + + I AL L D +++ K + D
Sbjct 226 FEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQ 285
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLED--LCFILQEEYHLN 625
FFS A + L + L++ + NPK L L+ +
Sbjct 286 SAFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGS 345
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
P++ T++FV T+ V+ + + G + + A+ ++ F
Sbjct 346 PDS-TLVFVPTKHHVEYVSELLVQ------------AGYSVSKIYGSLDQEARLNEINNF 392
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ G N+L+ T VA GIDI VI Y++ + GR RA
Sbjct 393 RL-GKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARA 440
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ + A TG GKT ++ HLK + + + + Q V +
Sbjct 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R I G + + DI++ TP ++ LK LS ++FDE
Sbjct 164 KGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLH-LKVEMKLELSSIEYVVFDEA 222
>sp|Q25225|IF4A_LEIBR Probable eukaryotic initiation factor 4A
OS=Leishmania braziliensis OX=5660 GN=LbrM01_V2.0740 PE=3 SV=2
Length=403
Score = 80.6 bits (197), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/154 (17%), Positives = 59/154 (38%), Gaps = 18/154 (12%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R L+ ++ E+ KL+ L + Y +++
Sbjct 218 ELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEH-KLDTL----MDLYETVSIAQSVI 272
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD + + + ++ + M ++ +++ F+ SG
Sbjct 273 FANTRRKVDWIAEKLNQ------------SNHTVSSMHAEMPKSDRERVMNTFR-SGSSR 319
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+L+ T + GID+ N+VI ++ N +
Sbjct 320 VLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353
Score = 59.4 bits (142), Expect = 9e-08, Method: Composition-based stats.
Identities = 34/189 (18%), Positives = 62/189 (33%), Gaps = 16/189 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
++ + L+D+ I F + P QNL Y KP + Q
Sbjct 5 DRVAPQDQDSFLDDQPGVRPIPSFD-DMPLHQNLLR---------GIYSYGFEKPSSIQQ 54
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
P +G + I A +G GKT + L +G V + + Q
Sbjct 55 RAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLV--LSPTRELALQTAE 112
Query 309 VFSKY---FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V S+ G T + ++ + + TP + + +K+G +
Sbjct 113 VISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGAL-RTES 171
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 172 LRVLVLDEA 180
>sp|O62591|IF4A_LEIMA Probable eukaryotic initiation factor 4A
OS=Leishmania major OX=5664 GN=LmjF.01.0770 PE=3 SV=1
Length=403
Score = 80.6 bits (197), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/154 (17%), Positives = 59/154 (38%), Gaps = 18/154 (12%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R L+ ++ E+ KL+ L + Y +++
Sbjct 218 ELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEH-KLDTL----MDLYETVSIAQSVI 272
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD + + + ++ + M ++ +++ F+ SG
Sbjct 273 FANTRRKVDWIAEKLNQ------------SNHTVSSMHAEMPKSDRERVMNTFR-SGSSR 319
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+L+ T + GID+ N+VI ++ N +
Sbjct 320 VLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353
Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/189 (19%), Positives = 62/189 (33%), Gaps = 16/189 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+K + L+D+ I F + P QNL Y KP + Q
Sbjct 5 DKIAPQDQDSFLDDQPGVRPIPSFD-DMPLHQNLLR---------GIYSYGFEKPSSIQQ 54
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
P +G + I A +G GKT + L +G V + + Q
Sbjct 55 RAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLV--LSPTRELALQTAE 112
Query 309 VFSKY---FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V S+ G T + ++ + + TP + + +K+G +
Sbjct 113 VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGAL-RTES 171
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 172 LRVLVLDEA 180
>sp|A4HRK0|IF4A_LEIIN Probable eukaryotic initiation factor 4A
OS=Leishmania infantum OX=5671 GN=LinJ01.0780 PE=3 SV=1
Length=403
Score = 80.6 bits (197), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/154 (17%), Positives = 59/154 (38%), Gaps = 18/154 (12%)
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+ + + L +R L+ ++ E+ KL+ L + Y +++
Sbjct 218 ELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEH-KLDTL----MDLYETVSIAQSVI 272
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F TR VD + + + ++ + M ++ +++ F+ SG
Sbjct 273 FANTRRKVDWIAEKLNQ------------SNHTVSSMHAEMPKSDRERVMNTFR-SGSSR 319
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+L+ T + GID+ N+VI ++ N +
Sbjct 320 VLVTTDLVARGIDVHHVNIVINFDLPTNKENYLH 353
Score = 60.6 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/189 (19%), Positives = 62/189 (33%), Gaps = 16/189 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+K + L+D+ I F + P QNL Y KP + Q
Sbjct 5 DKIAPQDQDSFLDDQPGVRPIPSFD-DMPLHQNLLR---------GIYSYGFEKPSSIQQ 54
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
P +G + I A +G GKT + L +G V + + Q
Sbjct 55 RAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLV--LSPTRELALQTAE 112
Query 309 VFSKY---FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V S+ G T + ++ + + TP + + +K+G +
Sbjct 113 VISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGAL-RTES 171
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 172 LRVLVLDEA 180
>sp|Q6FW42|DRS1_CANGA ATP-dependent RNA helicase DRS1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DRS1 PE=3 SV=1
Length=725
Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/193 (20%), Positives = 73/193 (38%), Gaps = 23/193 (12%)
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
L F L + N + ++FV + + L+ + L G + +
Sbjct 441 LLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILG------------LLGMAVAELHGSL 488
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
T + ++ FK S +LI T +A G+DI + +VI Y+ + + GR R
Sbjct 489 TQEQRLDSVNKFK-SLQVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTAR 547
Query 733 A-RGSKCFLLTSNAGV---IEKEQINMYKEKMM--NDSILRLQTWDEAVFREKILHIQT- 785
A R + A I K+ I + + + ++ R W++ KI+
Sbjct 548 AGREGRSITFVGEASAERSIVKDAIRGVNDSEIPGSKAVGRNVDWNQVEETNKIVENMDQ 607
Query 786 --HEKFIRDSQEK 796
+ + + +EK
Sbjct 608 TVQDILVEEKEEK 620
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/355 (19%), Positives = 122/355 (34%), Gaps = 27/355 (8%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQN--------LSENSCPPSEVSDTNLYSPFKPRN 245
D E + ED E ++Q FY + E +N ++ + + + KP
Sbjct 174 DAEEKVEEDTAE--EMQAFYAPESESENAKKEVHKTFNDLALSRPVMKGLSNLGYVKPSP 231
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYE 304
Q A+ GK+ I A TG GKT ++ L P +V+ +
Sbjct 232 IQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAI 291
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSL 363
Q V K + G++ EQ+++ DI+I TP +++++ ++
Sbjct 292 QVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRPDIVIATPGRFIDHIRNSASFNV 351
Query 364 SIFTLMIFDECHNTSKQ---HPYNMIMF--NYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
+++ DE + N IM Q L S+ ++ L + + +
Sbjct 352 DSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQTLLFSATMNSRIKQL---ISLSLKR 408
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+D + L + K + KP F + + K I+ +
Sbjct 409 PVRIMIDPPKQAATKLTQEFVRIRKRDHL-------KPSLLFNLIRKLDPNGQKRIVVFV 461
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
R + RI L ++ + TQ+ V K+ V + D SR
Sbjct 462 ARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASR 516
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42
OS=Dictyostelium discoideum OX=44689 GN=ddx42 PE=3 SV=1
Length=986
Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/195 (18%), Positives = 64/195 (33%), Gaps = 23/195 (12%)
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+++F + + + + Q ++ + D N L +L
Sbjct 496 NVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLL------- 548
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ ++FV T+ V+ L + + G + + + F
Sbjct 549 SQGSVLIFVSTKVAVEQLSSNLTK------------FGFQTCTLHGDKNQIERSQTIQTF 596
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLT 742
K G NILIAT VA G+DI V+ Y+ ++ I GR G L+T
Sbjct 597 K-EGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLIT 655
Query 743 SNAGVIEKEQINMYK 757
+ I +
Sbjct 656 PKDIHFSVDLIKNLE 670
Score = 70.2 bits (170), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/216 (20%), Positives = 81/216 (38%), Gaps = 32/216 (15%)
Query 190 KGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSE------NSCPPSEVSDTNLYSPFK- 242
+ I+ + D + +IFY+E P+ NL+E ++ T+L +P
Sbjct 247 RIIEPLPPIDHSKEEYIEFNKIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTS 306
Query 243 ---------------------PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 281
P Q + A+ G++ I A TG GKT + H
Sbjct 307 FGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISH 366
Query 282 LKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV 338
+ P +G +F A + Q KY + + T + G ++ +++
Sbjct 367 IMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELK 426
Query 339 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+II+ TP L++ +K L+ + ++ DE
Sbjct 427 AGCEIIVATPGRLIDMIKLKA-TKLNRVSYLVLDEA 461
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=fft2
PE=1 SV=1
Length=1284
Score = 82.5 bits (202), Expect = 1e-14, Method: Composition-based stats.
Identities = 109/648 (17%), Positives = 220/648 (34%), Gaps = 92/648 (14%)
Query 186 WIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF---- 241
+ ++ I E + I + N+ + P+E +D + + F
Sbjct 481 YAIDNLIAKCEFLGNRISKGMASWGIKLEMSNGELNIVDMESVPTEAADNSDFPKFVTEQ 540
Query 242 --------KPRNYQLE-------LALPAMKGKNTIICAPTGCGKT-----FVSLLICEHH 281
+ ++YQL L + G I+ G GKT F +LL+
Sbjct 541 PKTLASDVQLKSYQLVGVNWLHLLYQQKLSG---ILADEMGLGKTCQVVAFFALLL---- 593
Query 282 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
QG G + + + + RV G+ E + + +E N
Sbjct 594 ----EQGHHGPHLVVVPSSTLENWLRELARFC---PSLRVEPYYGSQQERANIREAIEEN 646
Query 342 ----DIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGG 397
DI++ T Q+ NN + + F + ++DE H + M +
Sbjct 647 EIKYDILVTTYQLATNNKEDRSFLKHQNFDVCVYDEGHYLKNR------MSERYKHLMNL 700
Query 398 SSGPLPQVIGLTASVGVGDAKNTDEALDYIC-----KLCASLDASVIATVKHNLEELEQV 452
++ +++ LT + + K L +I LD A + ++EQ
Sbjct 701 NAN--FRLL-LTGTPLQNNLKELVSLLAFILPNMFDSDMDDLDVIFKAKPTAD-ADIEQA 756
Query 453 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQW 512
+ Q+ R + Q++ D +I + + LS+ Q + Q
Sbjct 757 LLSKQRISRAKTMMTPFVLRRRKNQVLNDL-PKKTQIIEHCK-LSENQLEIYNRYAALQK 814
Query 513 IVTVQKACMVFQMPDKDEES-----------RICKALFLYTSHLRKYNDALIISEHARMK 561
+++ + DEES + + RK+ D + + A+
Sbjct 815 NQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDI 874
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES--VSRDPSNENPKLEDLCFILQ 619
+ K+ + + R L+S + DP ++ K+ L +L
Sbjct 875 MQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDDPWMDSGKIRVLKELLP 934
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ + +LF + ++D L+ ++ K+S+++ + + ++
Sbjct 935 K--MKEEGSRILLFSQFTQMLDILEQVLDT-LKISYVR-----------LDGSTQVEVRQ 980
Query 680 CILDAFKASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA----R 734
I+D F D + L++T GI++A N+VILY+ N +Q R R
Sbjct 981 DIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVR 1040
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
L ++ IE+ + K+ D L D E+++
Sbjct 1041 EVTVIRLITD-NTIEEYIQKLANTKLALDMSLSSDGKDREEIGERLVQ 1087
>sp|Q6CEB8|DRS1_YARLI ATP-dependent RNA helicase DRS1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DRS1 PE=3
SV=1
Length=753
Score = 81.8 bits (200), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/226 (17%), Positives = 77/226 (34%), Gaps = 30/226 (13%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ K L IL++ ++ E TI+FV + L+ + L G
Sbjct 482 HLKPALLASILKK---MDKEQRTIIFVARKETAHRLRIMLG------------LLGVRIG 526
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ ++ + + AFK + IL+ T +A G+DI + V+ Y+ +
Sbjct 527 ELHGALSQEQRLQSITAFKKL-EVPILVCTDLASRGLDIPKIECVVNYDMPQTHAVYLHR 585
Query 728 RGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR RA R + L A ++ ++I + + + +
Sbjct 586 VGRTARAGREGRSITLVGEA---------AADRAIVREAIKSVSESKQGKAVGRNVDWPE 636
Query 786 HEKFIRDSQEKPKPVPDKENKKLLCRKCKAL---ACYTADVRVIEE 828
EK +EK V + ++ + ++ E+
Sbjct 637 VEKLYSKIEEKGDIVNEILAEEKEEKAMLQAEMEVRKGENLLKYEK 682
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
A+ GK+ + A TG GKT ++ + E L K + KVV + Q V K
Sbjct 286 ALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKK 345
Query 313 YFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G R G V +++ +++I TP +++++ ++ +++
Sbjct 346 LAQYVSGVRFGLAVGGLNLRVQEQELKTRPEVVIATPGRFIDHVRNSPSFNVDDVEILVI 405
Query 372 DEC 374
DE
Sbjct 406 DEA 408
>sp|Q54TF8|DDX19_DICDI ATP-dependent RNA helicase ddx19 OS=Dictyostelium
discoideum OX=44689 GN=helC PE=2 SV=1
Length=465
Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/182 (22%), Positives = 66/182 (36%), Gaps = 23/182 (13%)
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
D +R E ++++ D +E+ K IL + Y +I+FV T A
Sbjct 264 DPYTSIRLKRQELSVEKIHQYFIDCGSEDNK----ALILSDIYGFISVGQSIVFVHTIAT 319
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
++ + +L G +T + + FK G +LI T+V
Sbjct 320 AKSVHQKMVDEGH----SVSLLYG-------KDLTTEERFKQIKDFK-DGKSKVLITTNV 367
Query 700 ADEGIDIAQCNLVILYEYV------GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQ 752
GIDI Q +LVI Y+ + + + GR GR S L +
Sbjct 368 LARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQSTNKL 427
Query 753 IN 754
+N
Sbjct 428 MN 429
Score = 42.8 bits (99), Expect = 0.012, Method: Composition-based stats.
Identities = 27/118 (23%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N I + +G GKT L + + P + + + + Q V SK +
Sbjct 110 NLIAQSQSGTGKTAAFTLGMLNCVD--PSINAPQAICISPTKELALQTFEVISKIGQFSN 167
Query 319 YR-VTGISGATAENVPVEQIVENNDIIILTPQ-ILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + IS N +II TP IL N +KK S+ +++ DE
Sbjct 168 IKPLLYISEIEVPKNVT------NQVIIGTPGKILENVIKKQ--LSVKFLKMVVLDEA 217
>sp|Q9DGP9|DDX25_XENLA ATP-dependent RNA helicase DDX25 OS=Xenopus
laevis OX=8355 GN=deadsouth PE=2 SV=1
Length=483
Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/209 (18%), Positives = 73/209 (35%), Gaps = 35/209 (17%)
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
+ ++ E L+ ++ N+ K LC + Y + I+F +TR +
Sbjct 296 DPNIIKLKKEELTLKNIQQFYDQCENKEQKYSALCNL----YGVITIAQAIVFCQTRKIA 351
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L + + G + + + + ++ F+ G +L+ T+V
Sbjct 352 SWLSQKLSDD------------GHQVALLSGELPVYDRADMIQRFR-EGREKVLVTTNVC 398
Query 701 DEGIDIAQCNLVILYEYV---------GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKE 751
GID+ Q ++V+ ++ + I GR +G L IE
Sbjct 399 ARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSL-------IENF 451
Query 752 QINMYKEKM--MNDSILRLQTWDEAVFRE 778
+ M KE N I +L + D +
Sbjct 452 FVYMLKEIEDHFNTKITKLNSMDMDEMGK 480
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (36%), Gaps = 4/117 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L + + + + + + Q V + +
Sbjct 137 QNLIAQSQSGTGKTAAFVLAMLS--RVDANKKYPQCICLSPTFELALQTGKVV-EEMGKF 193
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I +E I+I TP +++ K + ++ ++ + DE
Sbjct 194 CAGIEVIYALRGNRPGKGSRLEA-QIVIGTPGTVLDWCFKLRLITVENISVFVLDEA 249
>sp|Q4WPE9|PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Aspergillus fumigatus (strain ATCC MYA-4609 /
CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=prp28 PE=3 SV=1
Length=796
Score = 81.8 bits (200), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 28/255 (11%)
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR--------FEEKLQELESVS 601
D A M+ ++ + + I + +R E + +E
Sbjct 552 DTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRV 611
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ E+ + + L IL P I+FV + DA+ I+
Sbjct 612 EMIAGEDKRKKRLADILSSGEFRPP---IIVFVNIKRNCDAIAREIKQ------------ 656
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G + T ++ L + + +G ++L+AT +A GID+ +LV+ + ++
Sbjct 657 MGFSSVTLHGSKTQEQREAALASVR-NGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSI 715
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
GR R K + + G + + + K+ +M I R+ E + + +
Sbjct 716 ESYTHRIGR-TGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRVP---EELRKHEAA 771
Query 782 HIQTHEKFIRDSQEK 796
+ + + S +
Sbjct 772 QSKPNRGLAKKSDDS 786
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/207 (21%), Positives = 77/207 (37%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL 237
RN+ + W EK ++ + D E +I P E S P + +
Sbjct 322 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESGLPKRLLELVD 380
Query 238 YSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+ +P Q A++ ++ I A TG GKT ++S L + +
Sbjct 381 QVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEW-RK 439
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ + G+ V I G + + +III T
Sbjct 440 NDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIAT 499
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 500 PGRLVDCIERRLLV-LSQCCYVIMDEA 525
>sp|P21693|DBPA_ECOLI ATP-dependent RNA helicase DbpA OS=Escherichia
coli (strain K12) OX=83333 GN=dbpA PE=1 SV=2
Length=457
Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 66/179 (37%), Gaps = 16/179 (9%)
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK 635
AA +++D + L + + + K + +LQ L+ + ++F
Sbjct 192 AAISGRVQRDPLAIEIDSTDALPPIEQQFYETSSKGK--IPLLQRLLSLHQPSSCVVFCN 249
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
T+ A+ + + G+ + + + + L F A+G +L+
Sbjct 250 TKKDCQAVCDALNE------------VGQSALSLHGDLEQRDRDQTLVRF-ANGSARVLV 296
Query 696 ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 753
AT VA G+DI LV+ +E + + GR RA S + ++ I
Sbjct 297 ATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANI 355
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/148 (19%), Positives = 56/148 (38%), Gaps = 4/148 (3%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ 287
PP+++++ N Q + GK+ + A TG GKT L +
Sbjct 11 PPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLF 70
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIIL 346
+ + + +Q + ++ + G + + + II+
Sbjct 71 QT--QALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHAPHIIVA 128
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDEC 374
TP L+++L+KGT+ SL ++ DE
Sbjct 129 TPGRLLDHLQKGTV-SLDALNTLVMDEA 155
>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-5 PE=3 SV=1
Length=483
Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/159 (21%), Positives = 60/159 (38%), Gaps = 24/159 (15%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
P +D IL + Y L +++FV+TR + ++ +E + G +
Sbjct 296 PTEKDKYDILCKLYGLMTIGSSVIFVRTRETANEIQKRMEAD------------GHKVSA 343
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---------- 718
+ ++ +LD F+ SG +LI T+V GID++ ++VI Y+
Sbjct 344 LHGAYEGQSRDVLLDEFR-SGRSKVLITTNVLARGIDVSSVSMVINYDIPMKGPGEREPD 402
Query 719 -GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
+ I GR G + QI +
Sbjct 403 AETYLHRIGRTGRFGRVGVSISFVHDRRSFEALSQIAQF 441
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/119 (18%), Positives = 46/119 (39%), Gaps = 9/119 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
+N I + +G GKT +L + Q + + A + Q ++V +
Sbjct 114 RNMIAQSQSGTGKTAAFVLTVLSRIDLSKPHQP-QALLLAPSRELARQIQTVVQTIGQFC 172
Query 318 GYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I GA + V +++ TP +++ +K+ +S +++ DE
Sbjct 173 ENLIVEAAIPGAISRETGV-----RGSVVVGTPGTVMDLVKRRQFD-ISQLKVLVIDEA 225
>sp|Q9CWX9|DDX47_MOUSE Probable ATP-dependent RNA helicase DDX47
OS=Mus musculus OX=10090 GN=Ddx47 PE=2 SV=2
Length=455
Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 68/196 (35%), Gaps = 26/196 (13%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +IL E + T+ L+N G
Sbjct 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNL----------------GFTAIPL 293
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQ 726
+ M+ + L+ FKA IL+AT VA G+DI ++V+ ++ + I +
Sbjct 294 HGQMSQSKRLGSLNKFKAKARS-ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 352
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM------MNDSILRLQTWDEAVFREKI 780
R G +T + + ++ +K+ + ++ + +EA ++
Sbjct 353 RTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDEEVMMLTERVNEAQRFARM 412
Query 781 LHIQTHEKFIRDSQEK 796
+ EK R ++
Sbjct 413 ELREHGEKKKRKREDA 428
Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/176 (21%), Positives = 63/176 (36%), Gaps = 3/176 (2%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
D E + +Q +E+ E + + + KP Q+E A++G+
Sbjct 4 DEEPDSPSGALQTAAEEE-ETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGR 62
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ I A TG GKT L + L + PQ V + Q F G
Sbjct 63 DIIGLAETGSGKTGAFALPILNALLETPQRLFALV--LTPTRELAFQISEQFEALGSSIG 120
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ I G + + I+I TP L+++L+ +L ++ DE
Sbjct 121 VQCAVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEA 176
>sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP10
PE=3 SV=1
Length=900
Score = 81.8 bits (200), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 17/145 (12%)
Query 605 SNENPKLEDLCFILQEEYHLNP-ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
++ K + + +P E TI+F T+ VD L + + +G
Sbjct 341 EVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLTSILRT------------SG 388
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + A+K + F+ G +IL+ T VA GIDI + VI Y++
Sbjct 389 FAVSYAYGSLDQTARKIEVQNFR-DGITHILVVTDVAARGIDIPILSNVINYDFPSQPKI 447
Query 724 MIQTRG---RGRARGSKCFLLTSNA 745
+ G R G L+ +
Sbjct 448 FVHRVGRTARAGKTGWSYSLIRESD 472
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 45/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 121 LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELG 180
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + E + N DIII TP ++ LK LS ++FDE
Sbjct 181 RGTDLKSVLLVGGDSLEEQFEYMASNPDIIIATPGRFLH-LKVEMSLDLSSIRYVVFDEA 239
>sp|Q1E0Z3|DBP8_COCIM ATP-dependent RNA helicase DBP8 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP8 PE=3 SV=1
Length=536
Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 51/152 (34%), Gaps = 16/152 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L + + I+F D + G T+ ++
Sbjct 347 EAFLHVLLSTDANSSKP-AIIFCNRTKTAD------------LLDRLLRRLGHRVTSLHS 393
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ + L F+AS +L+AT VA G+DI LV+ ++ N I GR
Sbjct 394 LLPQSERTSNLARFRAS-AARLLVATDVAARGLDIPSVGLVVNFDVPRNPDDYIHRVGRT 452
Query 731 GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMM 761
RA R + L V I + M
Sbjct 453 ARAGREGEAITLVGQRDVQLVLAIEERVGRQM 484
Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I + TG GKT H + P G V + Q F
Sbjct 139 EILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFA--VVLTPTRELALQIFEQFKA 196
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ I+G + + ++I TP L +++K TI L+ ++
Sbjct 197 ISAPQSLKPVLITGGSEMRPQAIALSTRPHVVIATPGRLADHIKTSGQDTIYGLNRVRMV 256
Query 370 IFDEC 374
+ DE
Sbjct 257 VLDEA 261
>sp|A1CX72|PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181)
OX=331117 GN=prp28 PE=3 SV=1
Length=796
Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/227 (18%), Positives = 81/227 (36%), Gaps = 25/227 (11%)
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR--------FEEKLQELESVS 601
D A M+ ++ + + I + +R E + +E
Sbjct 552 DTEEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRV 611
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ E+ + + L IL P I+FV + DA+ I+
Sbjct 612 EMIAGEDKRKKRLADILSSGEFRPP---IIVFVNIKRNCDAIAREIKQ------------ 656
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G + T ++ L + + +G ++L+AT +A GID+ +LV+ + ++
Sbjct 657 MGFSSVTLHGSKTQEQREAALASVR-NGSTDVLVATDLAGRGIDVPDVSLVVNFNMANSI 715
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
GR R K + + G + + + K+ +M I R+
Sbjct 716 ESYTHRIGR-TGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRV 761
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/207 (21%), Positives = 77/207 (37%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL 237
RN+ + W EK ++ + D E +I P E S P + +
Sbjct 322 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESGLPKRLLELVD 380
Query 238 YSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+ +P Q A++ ++ I A TG GKT ++S L + +
Sbjct 381 QVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISELPRIDEFEW-RK 439
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ + G+ V I G + + +III T
Sbjct 440 NDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIAT 499
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 500 PGRLVDCIERRLLV-LSQCCYVIMDEA 525
>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41
OS=Dictyostelium discoideum OX=44689 GN=ddx41 PE=1 SV=1
Length=671
Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/313 (18%), Positives = 105/313 (34%), Gaps = 33/313 (11%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYII---AQLMRDTESLAKRICKDL-ENLSQIQNREF 504
L V++ ++ + + F I+ +L R T L L +N Q R
Sbjct 278 LPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTL 337
Query 505 ----GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
G EQ + + M+ P + + K + ++A + +
Sbjct 338 LAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLIDLGFE 397
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE-----------SVSRDPSNENP 609
D L +F + + F Q F L +++ E
Sbjct 398 DDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFV 457
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K E L E P ++F + + VD + ++ +L +
Sbjct 458 KPEAKIVYLLECLQKTPPP-VLIFCENKKDVDDIYEYL------------LLKQVEAVSI 504
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + ++ + AF+ G ++L+AT VA +G+D + VI ++ + I G
Sbjct 505 HGDKSQDERESAIKAFR-EGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIG 563
Query 730 RGRARGSKCFLLT 742
R RG+K T
Sbjct 564 RTGRRGNKGVATT 576
Score = 41.3 bits (95), Expect = 0.050, Method: Composition-based stats.
Identities = 45/261 (17%), Positives = 79/261 (30%), Gaps = 34/261 (13%)
Query 129 ECLINQECEEILQICSTKGMMAGAEKLVECLLRSD--KENWPKTLKLALEKERNKFSELW 186
E ++ E +IL+ T + + + ++ +D K NW + + LE++ ++
Sbjct 147 EKRLDMEESDILKSLKTFKPLVSVKDRAKDVIYTDSIKTNW-RAPRYILERDEKDHQKV- 204
Query 187 IVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+ + + I P E P + KP
Sbjct 205 ----------------RDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPI 248
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK------FPQGQKGKVVFFANQI 300
Q++ + G++ I A TG GKT V L + QG+ +
Sbjct 249 QVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSR 308
Query 301 PVYEQQK-------SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ Q + K R G + +II TP L++
Sbjct 309 ELARQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLD 368
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
L K I L DE
Sbjct 369 LLNKKKINFKLCKYLG-LDEA 388
>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Coccidioides immitis (strain RS) OX=246410 GN=PRP28
PE=3 SV=2
Length=820
Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 71/178 (40%), Gaps = 17/178 (10%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E + +E S E+ + + L IL P I+FV + DA+ I+
Sbjct 622 GEAVDTVEQRVEFISGEDKRKKRLADILASGEFRPP---IIVFVNIKRNCDAVARDIKQ- 677
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + +G+ ++L+AT +A GID+ +
Sbjct 678 -----------MGYSSVTLHGSKTQEQREAALASVR-NGNTDVLVATDLAGRGIDVPDVS 725
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
LV+ + N+ GR R K + + G + + + K+ +M SI R+
Sbjct 726 LVVNFNMATNIESYTHRIGR-TGRAGKSGVAITFLGNEDADVMYDLKQMLMKSSISRV 782
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/130 (22%), Positives = 53/130 (41%), Gaps = 11/130 (8%)
Query 254 AMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
A++ ++ I A TG GKT +++ L + + + A + +
Sbjct 414 ALQNRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEW-RKSDGPYAIILAPTRELAQ 472
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q ++ K+ G+ V I G + + +III TP LV+ +++ + LS
Sbjct 473 QIENEARKFCNPLGFNVVSIVGGHSLEEQSFSLRNGAEIIIATPGRLVDCIERRILV-LS 531
Query 365 IFTLMIFDEC 374
+I DE
Sbjct 532 QCCYVIMDEA 541
>sp|Q29S22|DDX47_BOVIN Probable ATP-dependent RNA helicase DDX47
OS=Bos taurus OX=9913 GN=DDX47 PE=2 SV=1
Length=457
Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/154 (19%), Positives = 53/154 (34%), Gaps = 20/154 (13%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +IL E + T+ L+N G
Sbjct 252 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNL----------------GFTAIPL 295
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQ 726
+ M+ + L+ FKA IL+AT VA G+DI ++V+ ++ + I +
Sbjct 296 HGQMSQSKRLGSLNKFKAKARS-ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 354
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
R G +T + + ++ +K+
Sbjct 355 RTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 388
Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/173 (21%), Positives = 61/173 (35%), Gaps = 2/173 (1%)
Query 202 DKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTI 261
D +E+ + E E + + + KP Q+E A++G++ I
Sbjct 8 DSLESMEAPQTAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDII 67
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A TG GKT L + L + PQ V + Q F G +
Sbjct 68 GLAETGSGKTGAFALPILNALLETPQRLFALV--LTPTRELAFQISEQFEALGSSIGVQC 125
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I G + + I+I TP L+++L+ +L ++ DE
Sbjct 126 AVIVGGIDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEA 178
>sp|Q9H0S4|DDX47_HUMAN Probable ATP-dependent RNA helicase DDX47
OS=Homo sapiens OX=9606 GN=DDX47 PE=1 SV=1
Length=455
Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/154 (19%), Positives = 53/154 (34%), Gaps = 20/154 (13%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +IL E + T+ L+N G
Sbjct 250 KDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNL----------------GFTAIPL 293
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQ 726
+ M+ + L+ FKA IL+AT VA G+DI ++V+ ++ + I +
Sbjct 294 HGQMSQSKRLGSLNKFKAKARS-ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVG 352
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
R G +T + + ++ +K+
Sbjct 353 RTARAGRSGKAITFVTQYDVELFQRIEHLIGKKL 386
Score = 75.2 bits (183), Expect = 9e-13, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 5/180 (3%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
E+ + E S + E+ E + + + KP Q+E A
Sbjct 2 AAPEEHDSPTEASQPIV---EEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLA 58
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ I A TG GKT L + L + PQ V + Q F
Sbjct 59 LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALV--LTPTRELAFQISEQFEALG 116
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + I G + + III TP L+++L+ +L ++ DE
Sbjct 117 SSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 176
>sp|Q7SEL0|PRP28_NEUCR Pre-mRNA-splicing ATP-dependent RNA helicase
prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28
PE=3 SV=1
Length=728
Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats.
Identities = 63/418 (15%), Positives = 124/418 (30%), Gaps = 75/418 (18%)
Query 378 SKQHPYNMIM--FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA--LDYICKLCAS 433
PY +I+ L Q++ + +G T VG ++A L ++ +
Sbjct 366 KNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNGAEIIVA 425
Query 434 LDASVIATVKHNLEELEQVVYK-PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
++ ++ L Q Y + R ++ + I+ + E K D
Sbjct 426 TPGRLVDCLERRLLVFSQCCYTIMDEADRMIDQGFEEPLTKILDAMPVTNE---KPDTDD 482
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
EN + G +Y Q ++ + + K R +
Sbjct 483 AENPQLMSRYVDGKDRYRQTMMYTATMPPIVERIAKKYLRR---------------PAIV 527
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
I D ++ +F S +
Sbjct 528 TIGNAGEAVDTVEQRVEFVSGEDKRK---------------------------------K 554
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L IL P I+FV + D + I+G G +
Sbjct 555 RLQEILNSGQFKPP---IIVFVNIKRNCDMVARDIKG------------MGYSAVTLHGS 599
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM---IQTRG 729
T ++ L + + +G +IL+AT +A GID+ +LV+ + N+ I G
Sbjct 600 KTQEQREAALASLR-NGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTG 658
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R G L + + + + ++ L+ + A + + + E
Sbjct 659 RAGKSGVAITFLGPEDNDVLYDLRQIISKSSISKVPDELRRHEAAQNKPQKGQKKLEE 716
Score = 70.2 bits (170), Expect = 7e-11, Method: Composition-based stats.
Identities = 52/270 (19%), Positives = 99/270 (37%), Gaps = 15/270 (6%)
Query 119 IPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
D S + + + E ++++ + + E + R D E + + LE+
Sbjct 184 DADDDTSRPFDPIYAERQEPLVRLGGYEMTEEMVMRKAEAIRRGDPETGEERARQYLEQH 243
Query 179 R--NKFSELWIVEKGIKDVETEDLEDKM-----ETSDIQIFYQEDPECQNLSENSCPPSE 231
R + + + K + + ED++++ E I P E S P
Sbjct 244 RRIKEMEQRKNLGKHWSEKKLEDMKERDWRIFKENFGIATKGGAIPNPMRSWEESTLPRR 303
Query 232 VSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---- 286
+ D + +P Q A++ ++ I A TG GKT LL ++ + P
Sbjct 304 LLDIVKNVGYDEPTPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTE 363
Query 287 --QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
+ + A + +Q +S K+ G+ V I G + + +II
Sbjct 364 YNKNDGPYALILAPTRELVQQIESEAKKFATPLGFTVVSIVGGHSLEEQAFALRNGAEII 423
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ TP LV+ L++ + S I DE
Sbjct 424 VATPGRLVDCLERRLLV-FSQCCYTIMDEA 452
>sp|Q0CLX0|PRP28_ASPTN Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
OX=341663 GN=prp28 PE=3 SV=1
Length=783
Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/218 (18%), Positives = 78/218 (36%), Gaps = 34/218 (16%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E + +E + E+ + + L IL P I+FV + DA+ I+
Sbjct 589 GEAVDTVEQRVELIAGEDKRKKRLGDILSSGEFRPP---IIVFVNIKRNCDAIAREIKQW 645
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + +G ++L+AT +A GID+ +
Sbjct 646 ------------GFSSVTLHGSKTQEQREAALASVR-NGSTDVLVATDLAGRGIDVPDVS 692
Query 711 LVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
LV+ + ++ GR GRA S + + N+ +
Sbjct 693 LVVNFNMATSIESYTHRIGRTGRAGKSGVAITF-----------------LGNEDADVMY 735
Query 770 TWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+ + + I + + +Q+KP K+N +
Sbjct 736 DLKQMLIKSPISRVPDELRKHEAAQQKPTRGFSKKNDE 773
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/207 (22%), Positives = 76/207 (37%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL 237
RN+ + W EK ++ + D E +I P S PS + D
Sbjct 301 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWAESGLPSRLLDLVH 359
Query 238 YSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+K P Q AM+ ++ I A TG GKT +++ L + +
Sbjct 360 RVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEW-RK 418
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ G+ V I G + + +III T
Sbjct 419 NDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGGHSLEEQAYSLRNGAEIIIAT 478
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 479 PGRLVDCIERRLLV-LSQCCYVIMDEA 504
>sp|Q879Y6|RHLB_XYLFT ATP-dependent RNA helicase RhlB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) OX=183190 GN=rhlB
PE=3 SV=1
Length=543
Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/304 (18%), Positives = 101/304 (33%), Gaps = 37/304 (12%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L VV + V D I+A + K NL +G
Sbjct 64 LVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNLGLRFALIYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD------ 562
Y++ ++K V R+ L + + + ++ E RM D
Sbjct 124 YDRQREMLRKGADV----VIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFDLGFIKD 179
Query 563 ---ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN----------P 609
L L + S + + + E + E E + + + P
Sbjct 180 IRFILRRLPERCSRQTLLFSATLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFP 239
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
E+ +L N T++FV T+ V+ + ++ + + G+L+G
Sbjct 240 AEEEKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDE----AGYRVGVLSG------ 289
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ +L+ F+ G IL+AT VA G+ I N V Y+ + + G
Sbjct 290 --DVPQRKRETLLNRFQ-KGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIG 346
Query 730 R-GR 732
R R
Sbjct 347 RTAR 350
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/126 (24%), Positives = 54/126 (43%), Gaps = 5/126 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKS 308
A+ G++ A TG GKT L++ + L P + + + A + Q +
Sbjct 43 ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYN 102
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ G R I G + E + + D++I TP L++ LK+ + SL + +
Sbjct 103 DAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEI 162
Query 369 MIFDEC 374
+ DE
Sbjct 163 CVLDEA 168
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP3 PE=3 SV=1
Length=504
Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/238 (15%), Positives = 76/238 (32%), Gaps = 24/238 (10%)
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN-VRAAGFDE 581
D+ E + + R + ++ K+ + F S V+ + +
Sbjct 242 LDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMFTATWPKEVRELASSFMSEPVKVSIGNR 301
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E +R + ++ ++ ++ + ++F +
Sbjct 302 DELSANKRITQIVEVVDPFRKEKKLLELLKKY-------HSGPTKNDKVLIFALYKKEAS 354
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++ ++ N G + ++ + L+ FKA G N+L+AT VA
Sbjct 355 RVERNLKYN------------GYDVAAIHGDLSQQQRTQALNEFKA-GKCNLLLATDVAA 401
Query 702 EGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
G+DI VI + + I GR G+ L T + +N+
Sbjct 402 RGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQYGTAHTLFTEQEKHLAGALVNVL 459
Score = 69.4 bits (168), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/121 (21%), Positives = 52/121 (43%), Gaps = 3/121 (2%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+ GK+ I A TG GKTF + + + + KV+ + + Q
Sbjct 127 LAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTRELASQIYDNLIVL 186
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G R + G ++ E + + +++ TP L++ +++G++ LS ++ DE
Sbjct 187 TDACGLRSCCVYGGVPKDQQRED-LRRSQVVVATPGRLLDLIEEGSVD-LSHVNYLVLDE 244
Query 374 C 374
Sbjct 245 A 245
>sp|Q2HEB0|PRP28_CHAGB Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51
/ DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=PRP28
PE=3 SV=1
Length=705
Score = 81.0 bits (198), Expect = 3e-14, Method: Composition-based stats.
Identities = 63/410 (15%), Positives = 122/410 (30%), Gaps = 75/410 (18%)
Query 378 SKQHPYNMIM--FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA--LDYICKLCAS 433
PY +I+ L Q++ + +G T VG ++A L ++ +
Sbjct 342 KNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRNGAEIIVA 401
Query 434 LDASVIATVKHNLEELEQVVYK-PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
++ ++ L Q Y + R ++ + I+ L E K +D
Sbjct 402 TPGRLVDCLERRLLVFSQCCYIIMDEADRMIDQGFEEPLTKILDALPVANE---KPDTED 458
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
EN + G +Y Q ++ MP E+ + +
Sbjct 459 AENSQLMSRYLGGKDRYRQTMM------YTATMPPLVEKI---------AKKYLRRPAIV 503
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
I D ++ +F S
Sbjct 504 TIGNAGEAVDTVEQRVEFVSGEDKRK---------------------------------R 530
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L IL P I+FV + + + I+ G +
Sbjct 531 RLQEILNSGQFKPP---VIVFVNIKRNCEMVAKDIKSW------------GYSTVTLHGS 575
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRG 729
T ++ L + + +G NIL+AT +A GID+A +LV+ + + I G
Sbjct 576 KTQEQREASLASVR-NGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTG 634
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
R G L + + + + + ++ L+ + A +
Sbjct 635 RAGKSGVAITFLGNEDSDVMYDLKQIISKSSISKVPEELRRHEAAQSKPT 684
Score = 76.7 bits (187), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/274 (19%), Positives = 101/274 (37%), Gaps = 23/274 (8%)
Query 119 IPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
P D S + + + E ++++ + + E + R D E + + LE+
Sbjct 160 DPEDDTSRPFDPVYAERPESLVRLAGYENTDELVLRKAEAIRRGDPETGEERARKLLEQH 219
Query 179 R--NKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTN 236
+ +E K + + ED++++ D +IF + P +++N
Sbjct 220 ERVKQAAERKNFGKHWSEKKLEDMKER----DWRIFKENFGIATKGGAIPNPMRSWAESN 275
Query 237 LYSPF----------KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH----- 281
L +P Q A + ++ I A TG GKT LL +
Sbjct 276 LPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELP 335
Query 282 -LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
L +F + + A + +Q ++ K+ G+ V I G + +
Sbjct 336 PLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGGHSLEEQAFALRNG 395
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+II+ TP LV+ L++ + S +I DE
Sbjct 396 AEIIVATPGRLVDCLERRLLV-FSQCCYIIMDEA 428
>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0150100 PE=2
SV=2
Length=627
Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/184 (19%), Positives = 72/184 (39%), Gaps = 19/184 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K + L E P ++F + +A VD + ++ +L G
Sbjct 417 KEDARIIYLLECLQKTPPP-VLVFCENKADVDYIHEYL------------LLKGVEAVAI 463
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ G ++ ++ FK +G ++L+AT VA +G+D VI Y+ + + G
Sbjct 464 HGGKDQEERENAIEFFK-NGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIG 522
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
R R K + T+ + E + + ++ ++ R+ V E ++ E
Sbjct 523 R-TGRCGKTGIATTFINKNQTETTLLDLKHLLKEAKQRI----PPVLAELNDPLEDEETM 577
Query 790 IRDS 793
++S
Sbjct 578 AKES 581
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 89/263 (34%), Gaps = 38/263 (14%)
Query 128 SECLINQECEEILQICSTKGMMAGAEKLVECLLRSD--KENW--PKTLKLALEKERNKFS 183
+E LI QE E I + K +M+ +L + + SD K W P L+ + ++
Sbjct 107 TEQLIMQEKEMIEHLSDRKTLMS-VRELAKGITYSDPLKTGWKPPLRLRRMPRAKADELR 165
Query 184 ELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKP 243
W + L D D+ P ++ + P + +P
Sbjct 166 RKWHI-----------LVDG---DDVP------PPARDFRDLRLPEPMLRKLREKGIVQP 205
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSL----LICEHHLKKFP--QGQKGKVVFFA 297
Q++ + G++ I A TG GKT V + ++ P G+ +
Sbjct 206 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIIC 265
Query 298 NQIPVYEQQKSVFSKYF------ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
+ +Q V ++ R G ++ + + I++ TP L
Sbjct 266 PSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVHIVVATPGRL 325
Query 352 VNNLKKGTIPSLSIFTLMIFDEC 374
+ L K + L + DE
Sbjct 326 KDLLAKKKMN-LDNCRYLTLDEA 347
>sp|Q9VIF6|DDX47_DROME ATP-dependent RNA helicase DDX47 OS=Drosophila
melanogaster OX=7227 GN=pths PE=1 SV=1
Length=507
Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 55/275 (20%), Positives = 101/275 (37%), Gaps = 40/275 (15%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD------- 603
+II+ R+ D L+ +K F ++ DE ++ L FE +L ++ V
Sbjct 182 IIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLF 241
Query 604 PSNENPKLEDL----------CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
+ K++ L + + + + LF+ + L + +
Sbjct 242 SATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGN 301
Query 654 SF----------LKPGILT---GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
SF +K ++ G + M+ + L+ FKA ILI+T VA
Sbjct 302 SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRS-ILISTDVA 360
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKE 758
G+DI ++V+ ++ + I GR RA R K L S + ++I
Sbjct 361 SRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLG 420
Query 759 KMM------NDSILRLQTWDEAVFREKILHIQTHE 787
K + D ++ LQ R L ++ E
Sbjct 421 KQLTLYKCEEDEVMALQERVAEAQRTAKLELKDLE 455
Score = 72.5 bits (176), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/132 (26%), Positives = 51/132 (39%), Gaps = 2/132 (2%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P Q E A++GK+ I A TG GKT L H L + PQ + + +
Sbjct 84 PSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQ--RYFALVLTPTREL 141
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q F G + + G Q+ + III TP LV++L+ +
Sbjct 142 AFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFN 201
Query 363 LSIFTLMIFDEC 374
L ++ DE
Sbjct 202 LKAIKYLVMDEA 213
>sp|Q09903|DRS1_SCHPO ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=drs1
PE=3 SV=1
Length=754
Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/324 (18%), Positives = 110/324 (34%), Gaps = 38/324 (12%)
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKL 594
+L L LRK D +I+ R D + + F N+ DE ++ L F ++L
Sbjct 368 LSLKLQEQELRKRPDI-VIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426
Query 595 QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK-TRALVDALK-NWIEGNPK 652
E+ + + + L+ +FV + L ++ P+
Sbjct 427 NEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQ 486
Query 653 LSFLKPGILT-------------------------------GRGKTNQNTGMTLPAQKCI 681
L+P +L T + ++ +
Sbjct 487 RELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRA 546
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 740
L+ F+ G N L+AT VA GIDI +VI YE + GR RA S +
Sbjct 547 LEDFR-DGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAI 605
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPV 800
+ K ++K ++ L + D + I+ E ++ ++ K
Sbjct 606 TLA-GEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQE 664
Query 801 PDKENKKLLCRKCKALACYTADVR 824
+ + + +K + + Y ++R
Sbjct 665 RELKIAERDLKKGENIMKYGDEIR 688
Score = 72.9 bits (177), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (43%), Gaps = 1/122 (1%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSK 312
A+ GK+ + A TG GKT ++ L P+ +V+ + Q SV +K
Sbjct 293 ALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATK 352
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
V G + + +++ + DI+I TP +++++ ++ +M+ D
Sbjct 353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMD 412
Query 373 EC 374
E
Sbjct 413 EA 414
>sp|Q9CWT6|DDX28_MOUSE Probable ATP-dependent RNA helicase DDX28
OS=Mus musculus OX=10090 GN=Ddx28 PE=2 SV=2
Length=540
Score = 80.2 bits (196), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 58/132 (44%), Gaps = 16/132 (12%)
Query 610 KLEDLCFILQEEYHLN---PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
K+ +L IL+++ + P ++F + + V+ L ++ + K+ L+ L G+
Sbjct 377 KVTELVQILKQQDKASKTEPSGTVLVFCNSASTVNWLGYILDDH-KIQHLR---LQGQMP 432
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ G+ QK G NIL+ T +A G+D +VI Y++ + I
Sbjct 433 ASMRAGIFQSFQK---------GSQNILVCTDIASRGLDSVHVEVVINYDFPPTLQDYIH 483
Query 727 TRGRGRARGSKC 738
GR GS+
Sbjct 484 RAGRVGRVGSEV 495
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/182 (21%), Positives = 65/182 (36%), Gaps = 16/182 (9%)
Query 208 DIQIFYQEDPECQNLSENSC-------PPSEVSDTNLYSPF-KPRNYQLELALPAMKGKN 259
I+ QE P +NLS P ++ +P + Q + P ++G++
Sbjct 108 SIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRH 167
Query 260 TIICAPTGCGKTFVSLLICEHHL-----KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ A TG GKT LL L + + + EQ ++V
Sbjct 168 LLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAPRGLVLVPSRELAEQVQAVAQSLG 227
Query 315 ERHGYRVTGISGATAENVPVEQIVEN--NDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
G +V + G + Q+ D+++ TP L LK I SL ++ D
Sbjct 228 GYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKSQLI-SLQHLNFIVLD 286
Query 373 EC 374
E
Sbjct 287 EV 288
>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis
thaliana OX=3702 GN=RH57 PE=2 SV=1
Length=541
Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/193 (18%), Positives = 70/193 (36%), Gaps = 20/193 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L D + + + + + R + ++ +E KL L E +
Sbjct 324 LPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPP- 382
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++FV+++ L + ++ ++ G++ ++ + ++ +D F+
Sbjct 383 ---VLIFVQSKERAKELYDELK----CENIRAGVI--------HSDLPPGERENAVDQFR 427
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
A G+ +LIAT V G+D N VI Y++ + I I GR G T
Sbjct 428 A-GEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTE 486
Query 744 NAGVIEKEQINMY 756
+ N
Sbjct 487 QDVPFLRNIANTM 499
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 69/192 (36%), Gaps = 24/192 (13%)
Query 198 EDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF---------------- 241
++L +ME + ++S N+ PP S L S +
Sbjct 107 KELNRQMERDALSRKQYSI----HVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFK 162
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q + + G+ CAPTG GKTF + LK+ P + V +
Sbjct 163 EPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKR-PSTDGIRAVILSPARE 221
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q K + + + ++ + ++ D++I TP L +K I
Sbjct 222 LAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLW--CDVLISTPMRLKRAIKAKKID 279
Query 362 SLSIFTLMIFDE 373
LS ++ DE
Sbjct 280 -LSKVEYLVLDE 290
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2
SV=1
Length=770
Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 17/147 (12%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E + ++L++ + + ++F +A VD +++ + G +
Sbjct 449 EKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQLNQR------------GFRIAALHG 496
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTR 728
++ L FK SG +++L+AT VA G+DI V+ ++ + I I
Sbjct 497 DKDQASRMETLQKFK-SGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRT 555
Query 729 GRGRARGSK-CFLLTSNAGVIEKEQIN 754
GR + L+T E ++
Sbjct 556 GRAGDKDGTAYTLITQKEVRFAGELVH 582
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/286 (17%), Positives = 98/286 (34%), Gaps = 56/286 (20%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV-VFFAN 298
KP Q + + G++ I A TG GKT +L H+ P + ++G + V A
Sbjct 241 KPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAP 300
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q K+ + + RV + G ++ +++ +I+I TP L++ LK
Sbjct 301 TRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMK 360
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAK 418
+ + T ++ DE MF+ + PQ+
Sbjct 361 AL-KMFRATYLVLDEADR----------MFDLGFE---------PQI------------- 387
Query 419 NTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
S++ ++ + + L P K R ++D + + Q+
Sbjct 388 -----------------RSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQV 430
Query 479 MRDTESLAK---RICKDLENLSQIQNREFGTQKYEQWIVTVQKACM 521
E + + + D E + + + G +V K
Sbjct 431 GSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKAR 476
>sp|Q97AI2|HELS_THEVO ATP-dependent DNA helicase Hel308 OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571
/ NBRC 15438 / GSS1) OX=273116 GN=hel308 PE=3 SV=1
Length=674
Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+ ++Q KGKN ++ PT GKT ++ K +K K ++
Sbjct 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFK-----KKLKSIYIVPLR 75
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ ++ S+ G RV G + ++ D++ILT + ++L
Sbjct 76 SLAMEKYEELSR-LRELGMRVKLSIGNYDD---TPDFIKRYDVVILTSEK-ADSLMHHDP 130
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL------GGSSGPLPQVIGLTASV 412
+ LM+ DE H MI Y L P ++I L+A+V
Sbjct 131 YMMEEVGLMVIDEIH---------MIGDEYRGPTLETVITTARYVNPETRIIALSATV 179
>sp|A6RJA2|PRP28_BOTFB Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Botryotinia fuckeliana (strain B05.10) OX=332648
GN=prp28 PE=3 SV=1
Length=783
Score = 80.6 bits (197), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 70/180 (39%), Gaps = 17/180 (9%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E ++ +E + E+ + + L IL P I+FV + DA+ I+
Sbjct 620 GEAVETVEQRVEFVAGEDKRKKRLNEILASGEFAPP---IIVFVNIKRNCDAVARDIK-- 674
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + SG N+L+AT +A GID+ +
Sbjct 675 ----------HMGFTSVTLHGSKTQEQREAALASVR-SGATNVLVATDLAGRGIDVPDVS 723
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
LV+ + N+ GR R K + + G + + + K+ + SI R +
Sbjct 724 LVVNFNMATNIESYTHRIGR-TGRAGKSGVAITFLGNEDSDTMYDLKQMLTKSSISRCRK 782
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 90/242 (37%), Gaps = 20/242 (8%)
Query 140 LQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETED 199
L+ + A A ++VE + R KE+ RN + W EK ++ + D
Sbjct 311 LEERDAEAGGARAREIVE-MERRRKED----------AGRNSLDKHWS-EKKLEHMRERD 358
Query 200 LEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
E +I P +N SE+ P + + +P Q A++ +
Sbjct 359 WRIFKEDFNISTKGGAIPNPMRNWSESKLPKRLLDVIHQVGYDEPSAVQRAAIPIALQAR 418
Query 259 NTIICAPTGCGKTFVSLLICEHH------LKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ I A TG GKT LL + L +F + + A + +Q + K
Sbjct 419 DLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKK 478
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G+ I G + + +III TP LV+ +++ + L +I D
Sbjct 479 FATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLV-LGQCCYIIMD 537
Query 373 EC 374
E
Sbjct 538 EA 539
>sp|Q86IZ9|DDX52_DICDI Probable ATP-dependent RNA helicase ddx52
OS=Dictyostelium discoideum OX=44689 GN=ddx52 PE=3 SV=1
Length=668
Score = 80.2 bits (196), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 67/169 (40%), Gaps = 18/169 (11%)
Query 222 LSENSCPPSEVSDTNLYSPFKPRNY----------------QLELALPAMKGKNTIICAP 265
+ P + L + FK R Y Q+++ +K + + AP
Sbjct 185 VDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKEREVVAIAP 244
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS 325
TG GKT + L + P+ + + V A + +Q F + +R+ +S
Sbjct 245 TGSGKTASFSIPILQALYE-PKKEGFRSVIIAPTRELAQQIYRNFRLLSKGKPFRICVLS 303
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E +++N DI+I TP LV L K + SL+ ++FDE
Sbjct 304 KNLHNQSTNENLIKNYDILITTPLRLV-YLIKENLLSLNKVEYLVFDEA 351
Score = 73.3 bits (178), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/158 (18%), Positives = 54/158 (34%), Gaps = 20/158 (13%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
E KL + ++Q+ ++F +++ L + I G
Sbjct 422 GKEEGKLLAVRQLIQKGLEPP----ILIFTQSKERAHDLFQEL------------IFDGI 465
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNV 721
++ T + I+ F+ G +LI T + G+D N VI +++ +
Sbjct 466 NVDVIHSERTQFQRDTIVKKFRM-GKIWVLICTELMARGMDFKGVNFVINFDFPHTLASY 524
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I I GR G L T + ++ K+
Sbjct 525 IHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQS 562
>sp|Q5GUR8|RHLB_XANOR ATP-dependent RNA helicase RhlB OS=Xanthomonas
oryzae pv. oryzae (strain KACC10331 / KXO85) OX=291331
GN=rhlB PE=3 SV=2
Length=574
Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/328 (16%), Positives = 107/328 (33%), Gaps = 30/328 (9%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V+ + + + D I+A + K K +L +G
Sbjct 64 LVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVD 123
Query 509 YEQWIVTVQKACMVFQMPDKDEESRIC--KALFLYTSHLRKYNDALIISEHARMKDALDY 566
Y++ +Q+ V + K + L+ + ++A + + +KD
Sbjct 124 YDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183
Query 567 LKDFFSNVRAAGF---DEIEQDLTQRFEEKLQELESVSRDPSNEN----------PKLED 613
L+ + + + E + E E + + P ++
Sbjct 184 LRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDDE 243
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+L + T++FV T+A V+ + +E + + G+L+G +
Sbjct 244 KQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSG--------DV 291
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
++ +L+ F+ G IL+AT VA G+ I V Y+ + + GR R
Sbjct 292 PQKKRESLLNRFQ-KGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ I Y E+
Sbjct 351 LGEEGDAISFACERYAMSLPDIEAYIEQ 378
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/411 (15%), Positives = 131/411 (32%), Gaps = 65/411 (16%)
Query 262 ICAP---------TGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQK 307
+ P TG GKT L+ + L P + + + + A + Q
Sbjct 42 VALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKPEDPRALILAPTRELAIQIH 101
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G R + G + E + + D+II TP L++ +K+ + SL
Sbjct 102 KDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACE 161
Query 368 LMIFDECHNTSKQHPYNMIMFN--------YLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + DE MF+ +L +++ + T S +
Sbjct 162 ICVLDEADR----------MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-----HRV 206
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ A +++ + V+ T + Q +Y P D+ + ++ L+
Sbjct 207 LELAYEHMNEPEKL----VVETETITAARVRQRIYFPSD----------DEKQTLLLGLL 252
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV---QKACMVFQMPDKDEESRICK 536
+E + + + + R Y +++ QK + + I
Sbjct 253 SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILV 312
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
A + L + + + DA DY+ R + +R+ L +
Sbjct 313 ATDVAARGLHI-DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPD 371
Query 597 LESVSRDPSNENPKLEDLCFIL----------QEEYHLNPETITILFVKTR 637
+E+ P +L L +E +++ +F + R
Sbjct 372 IEAYIEQKIPVEPVTSELLTPLPRAARVPVEGEEADDEAGDSVGTIFREAR 422
>sp|A2QIL2|PRP28_ASPNC Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Aspergillus niger (strain ATCC MYA-4892 / CBS
513.88 / FGSC A1513) OX=425011 GN=prp28 PE=3 SV=1
Length=810
Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/265 (17%), Positives = 95/265 (36%), Gaps = 27/265 (10%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTS--HLRKYNDALIISEHARMKDALDYLKDFF 571
V + +A + + ++ ++I AL + + L +S H +
Sbjct 528 VIMDEADRMIDLGFEEPVNKILDALPVSNEKPDSEDAENPLAMSRHINHDQHRYRQTMMY 587
Query 572 SNVRAAGFDEIEQDLTQR--------FEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 623
+ + I + +R E + +E + E+ + + L IL
Sbjct 588 TATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGDILSSGEF 647
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
P I+FV + DA+ I+ G + T ++ L
Sbjct 648 RAP---IIVFVNIKRNCDAIAREIKQW------------GFSSVTLHGSKTQDQREAALA 692
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTS 743
+ + +G ++L+AT +A GID+ +LV+ + ++ GR R K + +
Sbjct 693 SVR-NGTTDVLVATDLAGRGIDVPDVSLVVNFNMATSIESYTHRIGR-TGRAGKSGVAIT 750
Query 744 NAGVIEKEQINMYKEKMMNDSILRL 768
G + + + K+ +M I R+
Sbjct 751 FLGNEDADVMYDLKQMLMKSPISRV 775
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/207 (21%), Positives = 79/207 (38%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTN 236
RN+ + W EK ++ + D E +I P ++ E++ P + N
Sbjct 330 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWDESNLPKRLMELIN 388
Query 237 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+P Q AM+ ++ I A TG GKT +++ L + +
Sbjct 389 RVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEW-RK 447
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ G+ V I G + + + +III T
Sbjct 448 ADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIAT 507
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 508 PGRLVDCIERRILV-LSQCCYVIMDEA 533
>sp|Q9HJX7|HELS_THEAC ATP-dependent DNA helicase Hel308 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062
/ NBRC 15155 / AMRC-C165) OX=273075 GN=hel308 PE=3 SV=1
Length=674
Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats.
Identities = 52/344 (15%), Positives = 119/344 (35%), Gaps = 43/344 (13%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F+ ++Q KG+N ++ PT GKT ++ ++ K ++
Sbjct 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNL-----KSIYIVPLR 75
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ ++ S S+ + G +V G ++ ++ D +ILT + ++L
Sbjct 76 SLAMEKFSELSRLRDL-GLKVKMSIGDYDDSP---DFIKRYDAVILTSEK-ADSLLHHDP 130
Query 361 PSLSIFTLMIFDECHNTSKQ---HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
L+ L++ DE H T P + + P +++ L+A+V
Sbjct 131 YILNDVGLLVLDEIH-TIGDESRGPTLETV-----ASIARYVNPDVRILALSATV----- 179
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR-------KVESRISDK 470
+L + LDAS+I + + ++Y+ Q + + I +
Sbjct 180 -------SNAMELASWLDASLIKSDFRPVPLKTGILYRDQLYLDGKRRSGVSINQIIRET 232
Query 471 FKYIIAQLM-----RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
+ LM + E A+ + + + + I+ T Y+ + + + F
Sbjct 233 VEDNGQVLMFVSSRKKAEDTARDLAQIFGSDANIKISSDETNVYDDMLNEILPRGVAFHH 292
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
+ R ++ ++ + L ++D
Sbjct 293 AGLSNDQRAFIEREFRARRIKVIVATPTLAAGVNLPARLVIVRD 336
Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 46/328 (14%), Positives = 101/328 (31%), Gaps = 34/328 (10%)
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS 497
V++ + L + F R ++S + + + + L K ++
Sbjct 41 VVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAMEKFSELSRLRDLGLKVKMSIG 100
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQM-PDKDEESRICKALFLYTSHLRK----YNDAL 552
+ ++Y+ I+T +KA + P + + ++T
Sbjct 101 DYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLLVLDEIHTIGDESRGPTLETVA 160
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
I+ + + L SN + F + + RD + K
Sbjct 161 SIARYVNPDVRILALSATVSNAMELASWLDASLIKSDFRPVPLKTGILYRDQLYLDGKRR 220
Query 613 D---LCFILQEEYHLNPETITILFVKTR----ALVDALKNWIEGNPKLSFLKPGI----- 660
+ I++E N + ++FV +R L + +
Sbjct 221 SGVSINQIIRETVEDNGQ--VLMFVSSRKKAEDTARDLAQIFGSDANIKISSDETNVYDD 278
Query 661 ----LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ RG + G++ + I F+A +++AT G+++ LVI+ +
Sbjct 279 MLNEILPRGVAFHHAGLSNDQRAFIEREFRAR-RIKVIVATPTLAAGVNLPA-RLVIVRD 336
Query 717 YV---GNVIKMI------QTRGRGRARG 735
+ I + Q GR G
Sbjct 337 ITRWGSDGISYLTNMEIKQMIGRAGRPG 364
>sp|P0CR06|DBP10_CRYNJ ATP-dependent RNA helicase DBP10 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP10 PE=3 SV=1
Length=802
Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/158 (20%), Positives = 57/158 (36%), Gaps = 22/158 (14%)
Query 597 LESVSRDPSNENPKLEDLCFILQ------EEYHLNPETITILFVKTRALVDALKNWIEGN 650
L+ S P + L L + E + I+FV T+ VD + +
Sbjct 269 LKFFSVKPGEKEASLLVLLREVIGKPNQPEPADPSSAPQAIVFVATKHHVDYVAELLRT- 327
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
TG + + + A++ L F++ ++L+ T VA G+DI +
Sbjct 328 -----------TGYRTSLIYSSLDQVARQQQLAGFRSH-QSDVLVVTDVAARGLDIPIMD 375
Query 711 LVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNA 745
VI Y++ + G R +G+ L+
Sbjct 376 HVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKED 413
Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 24/140 (17%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV-------- 309
++ + A TG GKT L+ GQ + + + Q +V
Sbjct 67 RDILGMARTGSGKTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGM 126
Query 310 ---------------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ + G R I G + E++ N DI+I TP ++
Sbjct 127 NKGKGKGKNKNEDEEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLH- 185
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L L +I+DE
Sbjct 186 LIVEMHMDLRHLQTVIYDEA 205
>sp|P0CR07|DBP10_CRYNB ATP-dependent RNA helicase DBP10 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP10 PE=3 SV=1
Length=802
Score = 80.2 bits (196), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/158 (20%), Positives = 57/158 (36%), Gaps = 22/158 (14%)
Query 597 LESVSRDPSNENPKLEDLCFILQ------EEYHLNPETITILFVKTRALVDALKNWIEGN 650
L+ S P + L L + E + I+FV T+ VD + +
Sbjct 269 LKFFSVKPGEKEASLLVLLREVIGKPNQPEPADPSSAPQAIVFVATKHHVDYVAELLRT- 327
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
TG + + + A++ L F++ ++L+ T VA G+DI +
Sbjct 328 -----------TGYRTSLIYSSLDQVARQQQLAGFRSH-QSDVLVVTDVAARGLDIPIMD 375
Query 711 LVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNA 745
VI Y++ + G R +G+ L+
Sbjct 376 HVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKED 413
Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 24/140 (17%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV-------- 309
++ + A TG GKT L+ GQ + + + Q +V
Sbjct 67 RDILGMARTGSGKTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGM 126
Query 310 ---------------FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ + G R I G + E++ N DI+I TP ++
Sbjct 127 NKGKGKGKNKNEDEEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLH- 185
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L L +I+DE
Sbjct 186 LIVEMHMDLRHLQTVIYDEA 205
>sp|A2QA23|DBP6_ASPNC ATP-dependent RNA helicase dbp6 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp6 PE=3 SV=1
Length=593
Score = 79.8 bits (195), Expect = 5e-14, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 124/375 (33%), Gaps = 40/375 (11%)
Query 396 GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATV-------KHNLEE 448
P P++ GL K EA C+LCA+ +A+ E
Sbjct 187 ALKPLPAPRLRGLIVVPTRELVKQAREA----CELCAAGSGLRVASAVGNVAIKDEQRES 242
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L V++ + D +L+ K+LE L + +
Sbjct 243 LPGYVHRSEPNV--------DILICTPGRLVDHLRYTKGFTLKNLEWLVIDEADRLLNES 294
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKA---LFLYTSHLRKYNDALIISEHA----RMK 561
+++W+ V + + PD S + L + + RK + ++ ++
Sbjct 295 FQEWVDVVMTSLDARKAPDAFGFSGNFLSGLGLPIQSKEPRKVVLSATMTRDVTKLNSLR 354
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
A L S+ A + + LE + + + K L +L
Sbjct 355 LANPKLVVIGSDAAATEDESGGVAPSDEQFTLPPTLEEHTVSVGDGSQKPLYLLRLLLSH 414
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
L ET ++F K+ L + + G + K++ + +
Sbjct 415 IKL--ETKILVFTKSSESASRLARLLALLEPSLSDRIGTIIKSNKSSAS--------RKT 464
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKC 738
L A++ G +++IAT A G+D+ V+ Y+ ++ + G R +GS
Sbjct 465 LTAYRR-GKISVIIATDRASRGLDLRSLTHVVNYDVPASITTYVHRVGRTARAGQKGSAW 523
Query 739 FLLTSNAGVIEKEQI 753
L+ G QI
Sbjct 524 TLVAHREGKWFASQI 538
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/121 (24%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
I A TG GKT +L LK P + + + + +Q + G RV
Sbjct 168 ISAATGSGKTLSYVLPLVTALKPLPAPRL-RGLIVVPTRELVKQAREACELCAAGSGLRV 226
Query 322 TGISGATAENVPVEQIVE--------NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G A + + N DI+I TP LV++L+ +L ++ DE
Sbjct 227 ASAVGNVAIKDEQRESLPGYVHRSEPNVDILICTPGRLVDHLRYTKGFTLKNLEWLVIDE 286
Query 374 C 374
Sbjct 287 A 287
>sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp10
PE=3 SV=1
Length=928
Score = 80.2 bits (196), Expect = 6e-14, Method: Composition-based stats.
Identities = 64/371 (17%), Positives = 122/371 (33%), Gaps = 46/371 (12%)
Query 512 WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFF 571
+ T+ K+ + F E + I S +A + A + AL Y+
Sbjct 270 FSATLPKSLVEFARAGLQEPTLIRLDTESKISP--DLQNAFFSVKSADKEGALLYILHEV 327
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 631
+ + ++ LQE ++ S+D N + + TI
Sbjct 328 IKMPTGPTEVAQR---------LQEEKANSKDSKNSKKRKRSEMDKAVNMKESPTKHSTI 378
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
+F T+ VD L + + G + + A+K ++ F+ +G
Sbjct 379 VFAATKHHVDYLYSLLRE------------AGFAVSYAYGSLDQTARKIQVNNFR-TGLS 425
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 749
NIL+ T VA GIDI VI Y++ + GR RA R + L +A
Sbjct 426 NILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPY 485
Query 750 KEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI--------------RDSQE 795
+ ++ + + +L + D+ + E ++ + RD
Sbjct 486 LLDLQLFLGRRL---VLGREHGDQVDYAEDVVVGGFPRDSLAQNCEWVTRVLDDNRDIFS 542
Query 796 KPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFS- 854
+ E + R +L V+ H+T + F + + K +
Sbjct 543 QRTVATKGEKLYMRTRNAASLESAKRSKSVVGSDHWTTIHPLFSDAETEMEIQREKMLAR 602
Query 855 --SFEKRAKIF 863
+ + IF
Sbjct 603 IGGYRPQETIF 613
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 45/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 124 MDDRDVVGMARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELG 183
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 184 KGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLH-LKVEMNLDLSSIRYVVFDEA 242
>sp|Q5ACK7|DRS1_CANAL ATP-dependent RNA helicase DRS1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DRS1
PE=3 SV=1
Length=613
Score = 79.8 bits (195), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/217 (18%), Positives = 78/217 (36%), Gaps = 20/217 (9%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K + L L + + ++FV + L+ + L G +
Sbjct 356 KRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLG------------LLGLKVSEL 403
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ +T + + FK S + +LI T +A G+DI + LVI Y+ + G
Sbjct 404 HGALTQEQRLQNVKNFK-SLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVG 462
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
R RA R + +E+ + + + + W +A K+L ++ E
Sbjct 463 RTARAGRDGTSITFVGESS---QERAIVKSAIVNGKGVAKTVDWKQAEETNKLL--ESKE 517
Query 788 KFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR 824
I + E+ K + ++ K L + ++
Sbjct 518 SVIDEVLEEEKEAKELLRAEMELTKASNLIKHEQEIH 554
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/123 (24%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A+ GK+ + A TG GKT ++ L P KV+ + Q F K
Sbjct 164 ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTST-KVIILTPTRELALQVYE-FGKK 221
Query 314 FERHG--YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
H + G EQ+ DI+I TP L+++++ S+ +++
Sbjct 222 LSHHVNNLNIGLAVGGLNLRQQEEQLKTRPDIVIATPGRLIDHIRNSPSFSVQDIQVLVI 281
Query 372 DEC 374
DE
Sbjct 282 DEA 284
>sp|Q9PA24|RHLB_XYLFA ATP-dependent RNA helicase RhlB OS=Xylella
fastidiosa (strain 9a5c) OX=160492 GN=rhlB PE=3 SV=2
Length=543
Score = 79.4 bits (194), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/180 (18%), Positives = 65/180 (36%), Gaps = 15/180 (8%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
P E+ +L + T++FV T+ V+ + ++ + + G+L+G
Sbjct 239 PAEEEKIPLLLGLLSRSEGMRTMVFVNTKVFVEGVARALDE----AGYRVGVLSG----- 289
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ ++ +L+ F+ G IL+AT VA G+ I N V Y+ + +
Sbjct 290 ---DVPQRKRETLLNRFQ-KGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRI 345
Query 729 GR-GR-ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR R + I Y E+ + + + + E+ +
Sbjct 346 GRTARLGADGDAISFACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPERASNGNGD 405
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/126 (24%), Positives = 54/126 (43%), Gaps = 5/126 (4%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-----QGQKGKVVFFANQIPVYEQQKS 308
A+ G++ A TG GKT L++ + L P + + + A + Q +
Sbjct 43 ALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSRPGLVNRNPEDPRALILAPTRELAIQIYN 102
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K+ G R I G + E + + D++I TP L++ LK+ + SL + +
Sbjct 103 DAVKFGGNLGLRFALIYGGVDYDKQREMLRKGADVVIATPGRLIDYLKQHEVVSLRVCEI 162
Query 369 MIFDEC 374
+ DE
Sbjct 163 CVLDEA 168
>sp|Q6CJV1|DRS1_KLULA ATP-dependent RNA helicase DRS1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DRS1 PE=3 SV=1
Length=748
Score = 79.8 bits (195), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/384 (14%), Positives = 114/384 (30%), Gaps = 47/384 (12%)
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+ + S P + GL S+G A I L + A +
Sbjct 228 KKIVHKTFNSLSLSRPVLKGL-GSLGYTSPSPIQSAAIPIALLGKDIIAGAVTGSGKTAA 286
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
+ ++ + ++ + + ++ R+ + K++ + FG
Sbjct 287 FMIPIIER--LLYKPAHIAST---RVVVLTPTRELAIQVADVGKNIGKF--VNGLTFGLA 339
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
+ ++A R L S + L+I E RM + +
Sbjct 340 VGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVIDEADRMLEE-GFQ 398
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR---------DPSNENPKLE------ 612
++ + + K+++L S+S P KL
Sbjct 399 EELQEIMSLIPSKRQTLLFSATMNSKIKQLISLSLKKPVRIMIDPPKQAADKLTQEFIRI 458
Query 613 --------DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
L + L + + ++FV + L+ + L G
Sbjct 459 RKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLG------------LLGM 506
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ +T + ++ FK S +LI T +A G+DI + +VI ++
Sbjct 507 QVGELHGSLTQEQRLQSVNNFK-SLQVPVLICTDLASRGLDIPKIEVVINFDMPKTYEIY 565
Query 725 IQTRGR-GRA-RGSKCFLLTSNAG 746
+ GR RA R + +
Sbjct 566 LHRVGRTARAGREGRSVTFVGESS 589
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/123 (23%), Positives = 48/123 (39%), Gaps = 2/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSK 312
A+ GK+ I A TG GKT ++ L P +VV + Q V
Sbjct 267 ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAHIASTRVVVLTPTRELAIQVADVGKN 326
Query 313 YFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G++ EQ ++ DI+I TP +++L+ S+ +++
Sbjct 327 IGKFVNGLTFGLAVGGLNLRQQEQALKTRPDIVIATPGRFIDHLRNSASFSVDSVEILVI 386
Query 372 DEC 374
DE
Sbjct 387 DEA 389
>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-11 PE=3 SV=1
Length=829
Score = 79.8 bits (195), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/159 (19%), Positives = 53/159 (33%), Gaps = 20/159 (13%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P E+ + L I + Y I+F + + + ++ L G
Sbjct 519 PGRESKREGYLLHICKTIYTE----RVIIFFRQKKIAHKMRIIFG------------LFG 562
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ M + ++ F+ G N L+AT +A G+DI + VI YE
Sbjct 563 LSCAELHGSMNQAQRIQSVEDFR-DGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEI 621
Query 724 MIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ G R G+ L + K + K +
Sbjct 622 YVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQ 660
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/169 (19%), Positives = 63/169 (37%), Gaps = 11/169 (7%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTIICAPT 266
PE +N + S + +L P KP Q + ++ GK+ + A T
Sbjct 280 PEEENQPKKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVT 339
Query 267 GCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS 325
G GKT ++ L P+ +VV + Q +V K +
Sbjct 340 GSGKTAAFVVPILERLLYRPKKVPTTRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAV 399
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + V ++ D++I TP +++++ ++ +++ DE
Sbjct 400 GGLSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEA 448
>sp|Q10RI7|RH38_ORYSJ DEAD-box ATP-dependent RNA helicase 38 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0158200 PE=3
SV=1
Length=505
Score = 79.1 bits (193), Expect = 7e-14, Method: Composition-based stats.
Identities = 65/411 (16%), Positives = 134/411 (33%), Gaps = 62/411 (15%)
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
PY + + Q GS V+G+ + + IC I
Sbjct 139 PY----KDLIAQAHNGSGKTTCFVLGM-----LSRVDPNRKVTQAIC----------ICP 179
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
+ ++ + V+ + KF + + + + + + + L + N
Sbjct 180 TRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWIN 239
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
+ + +V + M+ + + + RI + + + + +E
Sbjct 240 HKKILTNDIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNE----- 294
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
+KDF + V + Q ++ E L++++ +E K+ + + E
Sbjct 295 ----RVKDFVTRV----IKDGNQIFVKKEELTLEKVKQYKVQVPDERAKIAVIKDKIFEF 346
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
I+FV+T+ + N + L + G + ++ I
Sbjct 347 GQ--KVGQVIIFVRTKQSTKDVHNALT----LEDYVCSSIQGS--------LDQSEREKI 392
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV-----------GNVIKMIQTRGR 730
+ FK +G +LI+T V G D AQ NLVI Y+ + I GR
Sbjct 393 IQEFK-NGYTKVLISTDVLARGFDQAQVNLVINYDMPIKFGTRDEPDYEVYLHRIGRAGR 451
Query 731 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
+G+ LL +I Y ++ ++ W E+ L
Sbjct 452 FGRKGAVFNLLCGETDNTVMRKIETY----FQHNVPEVRNWQSEEDFERAL 498
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/208 (18%), Positives = 81/208 (39%), Gaps = 23/208 (11%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
K+ I A G GKT +L + P + + + + +Q KSV + +
Sbjct 141 KDLIAQAHNGSGKTTCFVLGMLS--RVDPNRKVTQAICICPTRELAQQNKSVLMRMGKFT 198
Query 318 GYRV-TGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECH 375
G I A + VP+ ++ + + ++I T L+ + I + + +++FDE
Sbjct 199 GITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINHKKILT-NDIKILVFDEAD 257
Query 376 NTSKQHPYN----MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLC 431
+ + + IM + S QV+ +A+ + D++ ++
Sbjct 258 HMLAEDGFRSDSERIMRDI------QRSAGGCQVLLFSATFN-------ERVKDFVTRVI 304
Query 432 ASLDASVIATVKHNLEELEQV-VYKPQK 458
+ + + LE+++Q V P +
Sbjct 305 KDGNQIFVKKEELTLEKVKQYKVQVPDE 332
>sp|A1DG51|DBP3_NEOFI ATP-dependent RNA helicase dbp3 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp3
PE=3 SV=1
Length=503
Score = 79.1 bits (193), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F + ++ + K + + + L+AFK +
Sbjct 340 KVLVFCLYKKEAVRVERLLR----TKNFKV--------AGIHGDLNQHERFKSLEAFK-T 386
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G +L+AT VA G+DI LVI + + I GR A G L T
Sbjct 387 GAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETD 446
Query 746 GVIEKEQINMYK 757
IN+ +
Sbjct 447 KAQSGALINVLR 458
Score = 56.3 bits (134), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/122 (23%), Positives = 46/122 (38%), Gaps = 6/122 (5%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKK----FPQGQKGKVVFFANQIPVYEQQKSVFSK 312
G++ I A TG GKT L C + + + V + + Q SK
Sbjct 122 GRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSK 181
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ RVT I G ++ E ++ I++ TP L +L+ L ++ D
Sbjct 182 FGASVDIRVTCIYGGVKKDEQRE-ALKTAAIVVATPGRL-KDLQNDGSVDLGKVKYLVLD 239
Query 373 EC 374
E
Sbjct 240 EA 241
>sp|Q6C024|PRP28_YARLI Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
OX=284591 GN=PRP28 PE=3 SV=1
Length=575
Score = 79.1 bits (193), Expect = 7e-14, Method: Composition-based stats.
Identities = 30/170 (18%), Positives = 61/170 (36%), Gaps = 19/170 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L I+ + + P ++F+ + +A+ + + + G +
Sbjct 419 RRLLDIISKRQYRPP---IVVFLNYKRDCEAVSDAL------------VAAGWRTAIIHG 463
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM---IQTR 728
G ++ + K G ++L+AT VA G+DI +LV+ ++ N+ I
Sbjct 464 GKQQEQREQAVQHLKR-GAVDVLVATDVAGRGLDIPNVSLVVNFQMANNIESYTHRIGRT 522
Query 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
GR RG+ L + E M + + L A ++
Sbjct 523 GRAGKRGTAVTFLGQEDDDVLFELKQMISRSEASPNNQELSRHPAARMKK 572
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/268 (17%), Positives = 96/268 (36%), Gaps = 26/268 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKT------FVSLLICEHHLKKFPQGQKGKVVF 295
+P Q A+ ++ I A TG GKT +S + L + + +
Sbjct 185 EPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICELPKLDERSKVNGPYGLI 244
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + Q K K+ G++V + G + + E ++I+ TP L++ +
Sbjct 245 LAPTRELAMQIKDEAVKFCAPLGFKVVSVVGGYSAQEQALAVQEGAELIVATPGRLLDVI 304
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
+ + L+ ++ DE M + G + +V+ AS+
Sbjct 305 DRRLLV-LNQCCYVVMDEADR----------MVD------MGFEEQVQKVL---ASLPSS 344
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+AK + + + + + +E++ K + V + + +
Sbjct 345 NAKPDSDEAENLAAVSTRRYRQTMMYTATMPVAIEKLAKKYLRRPGIVTIGSAGQAGSTV 404
Query 476 AQLMRDTESLAKRICKDLENLSQIQNRE 503
QL+ + KR + L+ +S+ Q R
Sbjct 405 TQLVEFLNTDEKRKRRLLDIISKRQYRP 432
>sp|Q5BCU6|PRP28_EMENI Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163
/ CBS 112.46 / NRRL 194 / M139) OX=227321 GN=prp28 PE=3
SV=2
Length=782
Score = 79.4 bits (194), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 34/208 (16%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E + +E + E+ + + L IL P I+FV + DA+ I+
Sbjct 588 GEAVDTVEQRVEMIAGEDKRKKRLGEILSSGDFRPP---IIVFVNIKRNCDAIAREIKQW 644
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + + +G ++L+AT +A GID+ +
Sbjct 645 ------------GFSSVTLHGSKTQEQREAALASVR-NGSTDVLVATDLAGRGIDVPDVS 691
Query 711 LVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
LVI + ++ GR GRA S + + N+ +
Sbjct 692 LVINFNMATSIESYTHRIGRTGRAGKSGVAITF-----------------LGNEDADVMY 734
Query 770 TWDEAVFREKILHIQTHEKFIRDSQEKP 797
+ + + I + + +Q KP
Sbjct 735 DLKQMLIKSPISRVPEELRKHEAAQSKP 762
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/207 (21%), Positives = 77/207 (37%), Gaps = 13/207 (6%)
Query 178 ERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNL 237
RN+ + W EK ++ + D E +I P + S P + +
Sbjct 304 TRNQLDKHWS-EKKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVD 362
Query 238 YSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKFPQ 287
+ +P Q AM+ ++ I A TG GKT +++ L + +
Sbjct 363 RVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEW-RK 421
Query 288 GQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+ A + +Q + K+ E G+ V I G + + +III T
Sbjct 422 NDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIAT 481
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P LV+ +++ + LS +I DE
Sbjct 482 PGRLVDCIERRMLV-LSQCCYVIMDEA 507
>sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=RRP3 PE=3 SV=1
Length=504
Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats.
Identities = 52/278 (19%), Positives = 96/278 (35%), Gaps = 47/278 (17%)
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE--- 607
A I + + + + ++ + ++ ++ L + ++ +LE V
Sbjct 259 AKAIDQILKQIPSHQRITYLYTATMSREIEKFKRSLNSPVQVEIVKLEKVPDKLKQTMCL 318
Query 608 ---NPKLEDLCFILQEEYHLNPETITILF----VKTRALVDALKNWIEGNPKLSFLKPGI 660
N K L I+ +L+ I+F V TR L N K
Sbjct 319 TSPNTKDTRLIQIV----NLDSMKRVIIFTRTVVHTRRCCLMLLNL--------GFKCVE 366
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY--V 718
L G+ M + ++ FKA IL+AT VA G+DI +LVI Y+
Sbjct 367 LHGQ--------MPQSRRLGAINKFKAG--TPILVATDVAARGLDIPAVDLVINYDIPDP 416
Query 719 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
I + R G L+T + + ++ L + E + +
Sbjct 417 TLYIHRVGRTARAGKAGKAISLVTQYD----------LESYLRIENTLGTKLPKEDLPLD 466
Query 779 KILHIQTHEKFIRDSQEKPKPVPDKEN-KKLLCRKCKA 815
++ +Q R + + + ++EN KL R
Sbjct 467 EMQGLQVS--VDRALSKAIQMLRNEENDNKLRHRGRSN 502
Score = 69.4 bits (168), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/214 (21%), Positives = 76/214 (36%), Gaps = 9/214 (4%)
Query 164 KENWPKTLKLALEKER---NKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQ 220
KE+ P + +++ + SEL E + T+ + +S P Q
Sbjct 43 KESLPVSETISISTSETPVSDVSELSNKED----LSTKKDQSSASSSSSTSSSSSPPSVQ 98
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
+ +E P + +P Q A++GK+ + A TG GKT +
Sbjct 99 SFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQ 158
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
L + Q + A + Q K F G R I G + ++
Sbjct 159 TL--YTAAQPYYALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMMEQARDLMRK 216
Query 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+II TP L+++L+ SL ++ DE
Sbjct 217 PHVIIATPGRLIDHLEHTKGFSLKKLQYLVMDEV 250
>sp|Q7S9J4|DBP10_NEUCR ATP-dependent RNA helicase dbp-10 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71
/ DSM 1257 / FGSC 987) OX=367110 GN=dbp-10 PE=3 SV=1
Length=934
Score = 79.8 bits (195), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/249 (19%), Positives = 79/249 (32%), Gaps = 30/249 (12%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY-----------NDALIISEHARMKD 562
V +A +F+M E + I AL L L R+
Sbjct 247 VVFDEADRLFEMGFATELTEILHALPPSRQTLLFSATLPSSLVEFARAGLQEPSLVRLDA 306
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ--- 619
D S A E E L + ++ E+ +L+ +
Sbjct 307 ETKVSPDLESAFFAVKGGEKEGALLHLLHDVIKVPLGPPEGTKEESDELQARKRKREYRP 366
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
E TI+F T+ V+ + N ++ L G + + A+
Sbjct 367 NPKEKPTEYSTIIFTATKHHVEYIANLLK------------LAGFAVSYVYGSLDQTARL 414
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGS 736
+D F+ G +IL+ T VA GID+ VI Y++ + G R RG
Sbjct 415 IQVDNFRR-GRTHILVVTDVAARGIDMPALANVINYDFPSQPKIFVHRVGRTARAGQRGW 473
Query 737 KCFLLTSNA 745
L+ +
Sbjct 474 AYGLVRQSD 482
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ K+ + A TG GKT ++ LK + + + + Q V +
Sbjct 134 LERKDVVGMARTGSGKTAAFVIPMIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELG 193
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + + N DIII TP ++ LK SL+ ++FDE
Sbjct 194 RGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLH-LKVEMNLSLASIKYVVFDEA 252
>sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2
SV=1
Length=625
Score = 79.4 bits (194), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/196 (21%), Positives = 74/196 (38%), Gaps = 20/196 (10%)
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
F+ I T F++++ S KLE L +L+ L ++F T
Sbjct 322 FEGIVHLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEP--SLAKGNKVMVFCNTLN 379
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIAT 697
A+ +++ N N + + + L+ F+ GD L+ T
Sbjct 380 SSRAVDHFLTENQ------------ISTVNYHGEVPAEERVENLNKFRNEEGDCPTLVCT 427
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINM 755
+A G+D+ + VI++++ N I + GR R K L + V +I
Sbjct 428 DLAARGLDL-DVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVTSLVAKKDVTLATRIEE 486
Query 756 YKEKMMNDSILRLQTW 771
+K N+S+ L T
Sbjct 487 AMKK--NESLEALTTN 500
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/219 (19%), Positives = 85/219 (39%), Gaps = 16/219 (7%)
Query 262 ICAP--TGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYEQQKSVFSK 312
+ TG GKT LL L++ + ++ + V + EQ V
Sbjct 150 VVLGSHTGSGKTLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKS 209
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+R T +SG + + + D+++ TP +++++K G + ++ D
Sbjct 210 ISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGD-IKYLVLD 268
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ----VIGLTASVGVGDAKNTDEALDYIC 428
E +T + + +L ++ P Q V+ +TA++ K DE + I
Sbjct 269 EA-DTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVL-VTATMTKAVQKLIDEEFEGIV 326
Query 429 KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
L + +AT +H+ +L K + + +E +
Sbjct 327 HLRTTTFQKRVATARHDFIKLSGSENKLEALLQVLEPSL 365
>sp|Q96GQ7|DDX27_HUMAN Probable ATP-dependent RNA helicase DDX27
OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=2
Length=796
Score = 79.4 bits (194), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/195 (15%), Positives = 62/195 (32%), Gaps = 20/195 (10%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
I+ +LF +T+ + + L G + ++
Sbjct 453 IVAALLTRTFTDHVMLFTQTKKQAHRMHILLG------------LMGLQVGELHGNLSQT 500
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRA 733
+ L FK +IL+AT VA G+DI VI + + + G R
Sbjct 501 QRLEALRRFKDE-QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGR 559
Query 734 RGSKCFLLTSNAGVIEKEQINMY----KEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
G L+ + + KE + K +++ ++ + + + E
Sbjct 560 AGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAE 619
Query 790 IRDSQEKPKPVPDKE 804
++ Q+ + +
Sbjct 620 EKEMQQSEAQINTAK 634
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 85/269 (32%), Gaps = 11/269 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
+P Q + GK+ CA TG GKT L L P+ +V+
Sbjct 240 QPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTR 299
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q SV + + G + DI+I TP L+++L
Sbjct 300 ELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS 359
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
LS ++I DE ++ + M + ++ + T + V D +
Sbjct 360 FHLSSIEVLILDEADRMLDEY-FEEQMKEII--RMCSHHRQTM-LFSATMTDEVKDLASV 415
Query 421 DEA------LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
++ + L I + + E +V + + K
Sbjct 416 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQ 475
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNRE 503
++ + ++ + NLSQ Q E
Sbjct 476 AHRMHILLGLMGLQVGELHGNLSQTQRLE 504
>sp|Q2H4D0|SUB2_CHAGB ATP-dependent RNA helicase SUB2 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=SUB2 PE=3 SV=1
Length=434
Score = 78.3 bits (191), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/180 (21%), Positives = 66/180 (37%), Gaps = 22/180 (12%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E + + + L L+ P E K L +L E I+FVK+
Sbjct 254 TEHYVDEDTKLTLHGLQQYYI-PLEEREKNRKLNELLDELQF----NQVIIFVKSTIRAT 308
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSV 699
L + + +F + +G Q+ + +K + N I +AT V
Sbjct 309 ELDKLLR---ECNFPSIAVHSGVS------------QEERIRRYKEFKEFNKRICVATDV 353
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GIDI + NL I Y+ + + GR G+K ++ +KE + +++
Sbjct 354 FGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQIEKR 413
Score = 50.9 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q AM G + I A +G GKT V +L ++ P + V+ +
Sbjct 72 HPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVE--PVAGECSVLVMCHTRE 129
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T E +++N + II+ TP L N
Sbjct 130 LAFQIRNEYNRFSKYMPD--IKTGVFYGGTPIQKDAE-VLKNKETHPHIIVGTPGRL-NA 185
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + L + + DEC
Sbjct 186 LVRDKHLRLGNVRMFVLDEC 205
>sp|Q8Y755|CSHB_LISMO DEAD-box ATP-dependent RNA helicase CshB
OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679
/ EGD-e) OX=169963 GN=cshB PE=2 SV=1
Length=435
Score = 78.3 bits (191), Expect = 8e-14, Method: Composition-based stats.
Identities = 68/415 (16%), Positives = 139/415 (33%), Gaps = 48/415 (12%)
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ + + I K + + S T K + + ++ V++ I+ + +
Sbjct 28 PTEVQQKLIPGILKGESIIGQSQTGTGKTHTF-ILPIINNVNPEKDAVQAVITAPSRELA 86
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
Q+ + + K K++ I GT K ++ ++ P + +
Sbjct 87 TQIYNEIRKVTKYSEKEIAVQLVIG----GTDKQRAIDKLKKQPQIIVGTPGRINDLIRE 142
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ALF++T+ ++A + + + D +N++ F + F K
Sbjct 143 QALFVHTAKTLVIDEADMTLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYM 202
Query 596 ELESVSRDPSNEN--PKL---------------EDLCFILQEEYHLNPETITILFVKTRA 638
E +P E+ PK+ + +L+ + + I+F T+
Sbjct 203 E------NPRYEHIQPKVAASKTVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKT 256
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
D + N + G + + +K + + D+ ++AT
Sbjct 257 TADEVANGLIER------------GLKVAKIHGDVNPRERKRTMKQI-ENLDYQYVVATD 303
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT------SNAGVIEKE 751
+A GIDI + V+ YE ++ I GR GRA S L +EK
Sbjct 304 LAARGIDIQGISHVVNYELPDDLDFYIHRTGRTGRAGHSGIALTLFEPADEDRLNQLEKM 363
Query 752 QINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
I N + L+ + RE + + K K P+ + K
Sbjct 364 GIEFKHVDWKNKEFVTLEDRNRRAKREAKRETADPREIGMRKKAKQKGKPNYKKK 418
Score = 66.0 bits (159), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 60/136 (44%), Gaps = 5/136 (4%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
++P Q +L +KG++ I + TG GKT +L +++ P+ + V A
Sbjct 26 YEPTEVQQKLIPGILKGESIIGQSQTGTGKTHTFILPIINNVN--PEKDAVQAVITAPSR 83
Query 301 PVYEQQKSVFSKYF--ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + K V + G T + ++++ + II+ TP + + +++
Sbjct 84 ELATQIYNEIRKVTKYSEKEIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQ 143
Query 359 TIPSLSIFTLMIFDEC 374
+ + TL+I DE
Sbjct 144 ALFVHTAKTLVI-DEA 158
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium
discoideum OX=44689 GN=helB1 PE=2 SV=1
Length=1151
Score = 79.8 bits (195), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/153 (19%), Positives = 53/153 (35%), Gaps = 19/153 (12%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+ L +L YH + ++F + D L + + L+ G
Sbjct 742 RFRRLIELLSIWYH---KGQILIFTNRQETTDNLYRQLSNSQY------QCLSLHGSK-- 790
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
+ + FK ILIAT +A G+DI NLV+ ++ + + +
Sbjct 791 ----DQTDRDETISDFKNKVKT-ILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVG 845
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR RG+ +T + I ++
Sbjct 846 RTGRAGNRGTAYTFITPDEERFSSSIIKALEQS 878
Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP + Q + M G++ I A TG GKT LL H+ P+ G+ + +
Sbjct 531 KPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSP 590
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--K 356
+ Q K+ + G R + G + + + ++ DI++ TP +++ L
Sbjct 591 TRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCAN 650
Query 357 KGTIPSLSIFTLMIFDEC 374
I +L T ++ DE
Sbjct 651 NRRITNLRRVTFLVLDEA 668
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase 2 OS=Homo sapiens
OX=9606 GN=DDX21 PE=1 SV=5
Length=783
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 14/109 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ TI+F +T+ L + + + + ++ L F+
Sbjct 438 QGRTIIFCETKKEAQELSQ-------------NSAIKQDAQSLHGDIPQKQREITLKGFR 484
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+G +L+AT+VA G+DI + +LVI +V I GR G
Sbjct 485 -NGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAG 532
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/192 (22%), Positives = 73/192 (38%), Gaps = 17/192 (9%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPR------NY 246
+ + E E S+ +I QE P Q S P L K R
Sbjct 157 PEPDCNPSEAASEESNSEI-EQEIPVEQKEGAFSNFPISEETIKL---LKGRGVTFLFPI 212
Query 247 QLELALPAMKGKNTIICAPTGCGKTF-VSLLIC---EHHLKKFPQGQKGKVVFFANQIPV 302
Q + GK+ I A TG GKTF ++ + L+ +G+ +V+ A +
Sbjct 213 QAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTREL 272
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q FS ++ V G T E++ DI++ TP + ++++ G +
Sbjct 273 ANQVSKDFSDITKKLS--VACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLD- 329
Query 363 LSIFTLMIFDEC 374
L+ ++ DE
Sbjct 330 LTKLKHVVLDEV 341
>sp|Q9ZRZ8|RH28_ARATH DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis
thaliana OX=3702 GN=RH28 PE=2 SV=1
Length=789
Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/396 (15%), Positives = 131/396 (33%), Gaps = 34/396 (9%)
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFF--RKVESRISDKFKYIIAQLMRDTESL 485
LCAS T L LE+++++P++ F R + + + I ++++
Sbjct 205 RDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF 264
Query 486 AKRICKDL-ENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSH 544
C + LS + + + T + + + + +
Sbjct 265 TDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADR 324
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
L + A I+E R+ F + + + ++ L + + +R P
Sbjct 325 LLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL---SADPSARRP 381
Query 605 SNENPKLEDLCF--------ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
++ + +L ++ I+F T+ LK
Sbjct 382 PGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFG-------- 433
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
L G + +T + L+ F+ + + LIAT VA G+DI VI Y
Sbjct 434 ----LAGLKAAELHGNLTQAQRLDSLELFRKQ-EVDFLIATDVAARGLDIIGVQTVINYA 488
Query 717 YVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAG-----VIEKEQINMYKEKMMNDSILRLQ 769
+ + GR RA R +++ VI K+ + K +++ + +
Sbjct 489 CPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPEQSIVKW 548
Query 770 TWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 805
+ ++ + + E+ R ++ EN
Sbjct 549 SQIIDEMEDQYSAVISAERDERALRKAEMEFAKAEN 584
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 66/207 (32%), Gaps = 12/207 (6%)
Query 173 LALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP----ECQNLSENSCP 228
A + E +K E + + + ED + F+ E +
Sbjct 123 DASDAETDKQEEYLSEDDEAAEYKPEDAT-------PKPFFSTVDGVSFHADTFMELNLS 175
Query 229 PSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
+ KP Q A+ G++ A TG GKT L L P+
Sbjct 176 RPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKR 235
Query 289 Q-KGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT 347
+V+ + Q S+ + + I G + + DI++ T
Sbjct 236 VFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVAT 295
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDEC 374
P ++++L+ L ++I DE
Sbjct 296 PGRMIDHLRNSMSVDLDDLAVLILDEA 322
>sp|P0CQ91|MAK5_CRYNB ATP-dependent RNA helicase MAK5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=MAK5 PE=3 SV=1
Length=772
Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/272 (18%), Positives = 95/272 (35%), Gaps = 25/272 (9%)
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+ E G + IV + + Q PD D+ A S R+ + S
Sbjct 348 RMIENGHFAELESIVKLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLS 407
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQR--FEEKLQELESVSRDPSNENPKLEDLCFI 617
+ + S +DL ++ F ++ E+ +S + + E +
Sbjct 408 KDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIES 467
Query 618 LQEEYHLNPE-------TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+++ L +I+FV ++ + P L+ L+ +
Sbjct 468 TKDDKDLYLYYFLLRYPGRSIVFVN------SIDSIRRLLPLLTLLQLPVFPLHSH---- 517
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ + LD FK++ ILIAT VA G+DI Q + V+ + I GR
Sbjct 518 --LQQKQRLKNLDRFKSN-PKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGR 574
Query 731 -GRARGSKCF--LLTSNAGVIEKEQINMYKEK 759
RA+ L++ + +++ + +
Sbjct 575 TARAQNEGFALQLVSPDEKSVQRALMKSLERT 606
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 66/203 (33%), Gaps = 24/203 (12%)
Query 193 KDVETEDLEDKMETSDIQIFYQED-PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELA 251
+D+ D E+ D F + PE ++S + ++ +P Q
Sbjct 147 EDLNAADEEEHPNLDDEPAFNDDLLPEWSSISLHPSLKRSFLASSFTAPTAI---QSRAI 203
Query 252 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQ 306
+ G++ + A TG GKT L H+L + + G + + Q
Sbjct 204 PAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRELALQV 263
Query 307 KSVFSKYF-------------ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ V + G + + D+I+ TP L +
Sbjct 264 MDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWD 323
Query 354 NLKKGTIPSLSIFTL--MIFDEC 374
+K + S+ TL ++ DE
Sbjct 324 LIKADDELATSVRTLRFLVIDEA 346
>sp|Q4WH83|DBP3_ASPFU ATP-dependent RNA helicase dbp3 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp3 PE=3 SV=1
Length=503
Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/153 (21%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query 609 PKLEDLCFIL-QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
K L +L + + ++F + ++ + +F GI
Sbjct 319 EKEARLVQLLSRSQRGAAVGDKVLVFCLYKKEAVRVERLLRSK---NFKVAGI------- 368
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKM 724
+ + + L+AFK +G +L+AT VA G+DI LVI + +
Sbjct 369 --HGDLNQHERFKSLEAFK-TGSATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHR 425
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
I GR A G L T IN+ +
Sbjct 426 IGRTGRAGADGHAITLFTEADKAQSGALINVLR 458
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/122 (23%), Positives = 47/122 (39%), Gaps = 6/122 (5%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKK----FPQGQKGKVVFFANQIPVYEQQKSVFSK 312
G++ I A TG GKT L C + + + V + + Q SK
Sbjct 122 GRDVIGIAETGSGKTLAFGLPCIKKILDSGKVKRKHARPAAVIISPTRELAMQIYDQLSK 181
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ RVT I G ++ E ++ I++ TP L + G++ L ++ D
Sbjct 182 FGASVDIRVTCIYGGVKKDEQRE-ALKTAAIVVATPGRLKDLKDDGSVD-LGKVKYLVLD 239
Query 373 EC 374
E
Sbjct 240 EA 241
>sp|Q1EB38|DBP10_COCIM ATP-dependent RNA helicase DBP10 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP10 PE=3 SV=1
Length=927
Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/237 (19%), Positives = 78/237 (33%), Gaps = 27/237 (11%)
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR 602
+ + D + + + L +V E E R + + +
Sbjct 288 TESKISPDLQSVFFTVKSAEKEGALLHILHDVIKVPTGETEAGKHAREQAISGKSSKKRK 347
Query 603 DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
NP E TI+FV T+ VD + + + +
Sbjct 348 RSEQNNP----------NPQESPTEHSTIIFVATKHHVDYIASLLRE------------S 385
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G + + A+K + F+ +G NIL+ T VA GIDI VI Y++
Sbjct 386 GFAVSYAYGSLDQTARKIQVSNFR-TGISNILVVTDVAARGIDIPILENVINYDFPSQAK 444
Query 723 KMIQTRGR----GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ GR GR S + ++A + Q+ + + +M + E V
Sbjct 445 IFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRLVMGRGQQESANFAEDV 501
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 44/120 (37%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 116 LDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELG 175
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + + N DIII TP ++ LK LS ++FDE
Sbjct 176 RGTDLKCVLLVGGDSLEEQFGYMAGNPDIIIATPGRFLH-LKVEMNLDLSSIKYVVFDEA 234
>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os09g0520700 PE=2 SV=1
Length=696
Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
+ TI+F +T+ L I G + + ++ IL
Sbjct 366 YSRGGRTIIFTETKESASDLSGLIA----------------GSRALHGDVAQAQREVILA 409
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
F+ SG +L+AT+VA G+DI L+I E +V I GR GRA + ++
Sbjct 410 GFR-SGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVML 468
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL--------KKFPQGQKGKVVFFANQIPVYEQQ 306
+ G + + A TG GKT +L L ++ G+ V+ + +Q
Sbjct 150 LDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQV 209
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ F+ Y G + G + I + DI++ TP + + ++KGT+ S
Sbjct 210 HTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRS-L 268
Query 367 TLMIFDEC 374
+ DE
Sbjct 269 KFRVLDEA 276
>sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia
oleracea OX=3562 GN=RH7 PE=2 SV=1
Length=685
Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/120 (23%), Positives = 46/120 (38%), Gaps = 18/120 (15%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
+I+F +T+ L + G L + + ++ L
Sbjct 358 YGSGGRSIIFTETKESASQLAGLLTGARPL----------------HGDIQQTQREVTLK 401
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
F+ +G L+AT+VA G+DI L+I E +V I GR GRA + ++
Sbjct 402 GFR-TGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVML 460
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 51/138 (37%), Gaps = 19/138 (14%)
Query 253 PAMKGKNTI-IC-----APTGCGKTFVSLLICEHHL-----KKFPQGQKGK---VVFFAN 298
AM N I C A TG GKT +L L K + G+ V+
Sbjct 134 QAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLP 193
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + F Y G + G + + + DI++ TP + + L+KG
Sbjct 194 TRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKG 253
Query 359 TIPSLSIFTLM--IFDEC 374
L + +L+ + DE
Sbjct 254 V---LKLGSLLFRVLDEA 268
>sp|Q09775|ROK1_SCHPO ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=rok1
PE=3 SV=1
Length=481
Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/333 (14%), Positives = 105/333 (32%), Gaps = 27/333 (8%)
Query 450 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 509
++ P + + R ++K + + + + ++I + L + + GT
Sbjct 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMR 176
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
+ + + DE R+ + F+ + + + S + +
Sbjct 177 LVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQT---DHILSACTSSNICKSLFSATIPS 233
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
+ + + + + ++ ++ K+ L ++
Sbjct 234 RVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKP---R 290
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
++FV+ AL +L F + + G + ++ L F+ G
Sbjct 291 VVIFVQDIERAKAL------YTELLFDEIHVGVIHG------ELPQAKREEALAKFR-KG 337
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAG 746
+ +LIAT + GID +VI +++ + I I GR G T G
Sbjct 338 EIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDG 397
Query 747 VIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
K +M S + W A+ +
Sbjct 398 EYIKLIAG-----VMRSSGCEVPNWVMALPKPS 425
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/118 (23%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERH 317
++ + CAPTG GKT L L+ G + + A + EQ K
Sbjct 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPG-GYRAIIVAPTRELCEQIYRQAEKLSFGT 142
Query 318 GYRVTGISGATAE-NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ +S + + ++ E D+ I TP LV ++ G S + DE
Sbjct 143 SLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAIQTG--LSFEKVEFFVMDEA 198
>sp|A4R5B8|DBP10_PYRO7 ATP-dependent RNA helicase DBP10 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP10 PE=3 SV=1
Length=914
Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/247 (20%), Positives = 77/247 (31%), Gaps = 30/247 (12%)
Query 503 EFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR---------------K 547
E V +A +F+M + + I +L L
Sbjct 227 EMSLDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLLFSATLPRSLVEFARAG 286
Query 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
D ++ A K + D FFS A + L + E D
Sbjct 287 LQDPSLVRLDAETKISPDLESAFFSVKGAEKEGALLHILQDVIKMPTGTPEGFKEDKDEG 346
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ K E TI+F T+ V+ L + + G +
Sbjct 347 S-KKRKRGPDRPNAKEKPTEHSTIIFTATKFHVEYLTSILVQ------------AGYAVS 393
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ + A+K ++ F+ G NIL+ T VA GIDI VI Y++ +
Sbjct 394 HAYGALDQTARKIQVEDFRR-GKTNILVVTDVAARGIDIPVLANVINYDFCDQPKVFVHR 452
Query 728 RGR-GRA 733
GR RA
Sbjct 453 VGRTARA 459
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ + A TG GKT ++ L+ + + + + Q V ++
Sbjct 125 LDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFG 184
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DIII TP ++ LK LS ++FDE
Sbjct 185 KGTDLKTVLLVGGDSLEDQFGFMTTNPDIIIATPGRFLH-LKVEMSLDLSSIKYVVFDEA 243
>sp|A2QAB5|ROK1_ASPNC ATP-dependent RNA helicase rok1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=rok1 PE=3 SV=2
Length=729
Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/288 (15%), Positives = 98/288 (34%), Gaps = 23/288 (8%)
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
LS + + T + +V + +A ++ +D+ I ++ ++ + +
Sbjct 368 LSANRTKPLATLPLVRNVV-LDEADVLLDPLFRDQTLDIWRSCTHPELRASLWSATMGSN 426
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
K + KD S ++ + L ++ + E KL L
Sbjct 427 VEDLAKSTIKERKDTLSETKSYPLLRLVVGLKDSAIPNIKH---KLVYAATEQGKLLGLR 483
Query 616 FILQEEYHLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-N 670
+L + + ++F +T AL + +L + P G + +
Sbjct 484 QLLHPAAASSTDIRLRPPFLIFTQTIPRAVAL------HSELRYDIPPEAGGSSRIAVLH 537
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQT 727
+ ++ + I+ F+ G+ IL+ T + G+D N V+ Y+ + + +
Sbjct 538 SELSDGQRSEIMKQFR-KGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGR 596
Query 728 RGRGRARGSKCFLLTSNAGV----IEKEQINMYKEKMMNDSILRLQTW 771
GR G + + I++ ++ D +Q W
Sbjct 597 TGRAGREGGIAVTYYTKEDIPYVKSIANVIDVSEKLRGTDEEKSVQKW 644
Score = 54.0 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 51/155 (33%), Gaps = 39/155 (25%)
Query 259 NTIICAPTGCGKTF---VSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT + ++ H + P+ + V A + Q + K
Sbjct 236 DLLVVAPTGSGKTLSFMIPVINKIVRHHHEKPEERGILSVVIAPTKELASQIVNEGRKLA 295
Query 315 ERHGYRVTGISGATAENVPVEQI--------------------------------VENND 342
G ++T + ++ V +D
Sbjct 296 LGTGVKITLMKKGMRVVERDDEDDSKDVLDEDDSESLGSEDDEKATAKNSKGKAPVTKSD 355
Query 343 IIILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
I++ TP +LVN L L+ L ++ DE
Sbjct 356 ILVTTPLLLVNALSANRTKPLATLPLVRNVVLDEA 390
>sp|Q0CNX1|DBP8_ASPTN ATP-dependent RNA helicase dbp8 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp8
PE=3 SV=1
Length=527
Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 3/102 (3%)
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
T+ ++ + + L F+AS IL+AT VA G+DI LV+ Y+ N
Sbjct 377 HRVTSLHSLLPQSERSSNLARFRAS-AARILVATDVASRGLDIPSVALVVNYDVPRNPDD 435
Query 724 MIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
+ GR RA R + L V I + M +
Sbjct 436 YVHRVGRTARAGRRGEAVTLVGQRDVQLVLAIEERVGRQMEE 477
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 38/195 (19%), Positives = 66/195 (34%), Gaps = 15/195 (8%)
Query 192 IKDVETEDLEDKMET---------SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK 242
IK E +D T +++ Q+ E + N P S T + K
Sbjct 50 IKKKEPKDENKDTSTGTDNPVLIKDALEMGLQDAGESSFKALNVAPWLIGSLT-TMAVRK 108
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P Q +KG++ I + TG GKT + + P G V +
Sbjct 109 PTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFA--VVLTPTREL 166
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---T 359
Q F + I+G T + + ++I TP L ++++ T
Sbjct 167 ALQIYEQFKAISAPQSMKPVLITGGTDMRPQALALSQRPHVVIATPGRLADHIQTSGEDT 226
Query 360 IPSLSIFTLMIFDEC 374
+ L +++ DE
Sbjct 227 VRGLKRVRMVVLDEA 241
>sp|P54475|CSHB_BACSU DEAD-box ATP-dependent RNA helicase CshB
OS=Bacillus subtilis (strain 168) OX=224308 GN=cshB PE=1 SV=1
Length=438
Score = 77.5 bits (189), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/347 (17%), Positives = 127/347 (37%), Gaps = 32/347 (9%)
Query 424 LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE 483
+ + K + + S T K + L ++ K V+ I+ + + Q+ ++
Sbjct 35 IPAVLKKESVIGQSQTGTGKTH-AYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEAL 93
Query 484 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF--QMPDKDEESRICKALFLY 541
+ + E SQI+++ F +Q + K P + + +AL ++
Sbjct 94 KITQG-----EEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKEQALSVH 148
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
+ ++A ++ + + D +++ F + + F +K E +
Sbjct 149 KAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYA 208
Query 602 -RDPSNENP-KLEDLC---------FILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+P K+E + +L + + I+F T+ D + ++ G
Sbjct 209 HVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTG- 267
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+K G+L G G+T +K ++ + +IAT +A GIDI +
Sbjct 268 ---KGMKIGLLHG--------GLTPRERKKVMKQI-NDLEFTYIIATDLAARGIDIKGVS 315
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
VI YE ++ + GR GS +T E + + K
Sbjct 316 HVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEK 362
Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 57/137 (42%), Gaps = 6/137 (4%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
++P + Q L +K ++ I + TG GKT LL + + P +VV A
Sbjct 25 YEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKID--PAKDVVQVVITAPTR 82
Query 301 PVY---EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q+ ++ E R G T + ++++ +++ TP + + +K+
Sbjct 83 ELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKE 142
Query 358 GTIPSLSIFTLMIFDEC 374
+ +L+I DE
Sbjct 143 QALSVHKAESLVI-DEA 158
>sp|Q9Y7T7|PRP28_SCHPO Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) OX=284812 GN=prp28 PE=3 SV=1
Length=662
Score = 78.7 bits (192), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 86/245 (35%), Gaps = 22/245 (9%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY---LKDF 570
V + +A + M +D+ ++I +L + + + + + + + + L
Sbjct 403 VVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPR 462
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
+N+ + E + + +E S+++ K + IL+ P
Sbjct 463 VANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPP---I 519
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
I+FV + ++A+ + G + + ++ ++ +
Sbjct 520 IIFVNLKRNIEAIAKQLNA------------IGWHAVTLHGSKSQEQRERAIEQLRNK-T 566
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
+IL+AT +A GIDI +LV+ Y + I GR G+ L
Sbjct 567 ADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTD 626
Query 748 IEKEQ 752
+ +
Sbjct 627 VYYDL 631
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 51/251 (20%), Positives = 104/251 (41%), Gaps = 19/251 (8%)
Query 135 ECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN----KFSELWIVEK 190
+ + I + S G L++ LL+ +++ + +L +E+ + ++ EK
Sbjct 166 DDQSIRKAKSNSG-------LIQRLLQGTEQDKARAHELIQLQEKRAKKIDWDDVPWREK 218
Query 191 GIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLE 249
++ ++ D E +I I + P E + PSE+ + +P + Q
Sbjct 219 PLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRA 278
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV------VFFANQIPVY 303
++ K+ I A TG GKT ++ + K P + + V A +
Sbjct 279 AIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELA 338
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
+Q + +K+ E G+R + G A Q+ + I++ TP L++ L++ + L
Sbjct 339 QQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLER-RLFVL 397
Query 364 SIFTLMIFDEC 374
S T ++ DE
Sbjct 398 SQCTYVVMDEA 408
>sp|P0CQ90|MAK5_CRYNJ ATP-dependent RNA helicase MAK5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=MAK5 PE=3 SV=1
Length=772
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 94/272 (35%), Gaps = 25/272 (9%)
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+ E G + IV + + Q PD D+ A S R+ + S
Sbjct 348 RMIENGHFAELESIVKLTQRSTAQQGPDDDDPVFQAMATLFEESTAREDMQTFVFSATLS 407
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQR--FEEKLQELESVSRDPSNENPKLEDLCFI 617
+ + S +DL ++ F ++ E+ +S + + E +
Sbjct 408 KDLQKNLKRRSRSWKGKGKRSSTLEDLVEKLDFRDENPEVIDLSPEGGVVSSLRESMIES 467
Query 618 LQEEYHLNPE-------TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+++ L +I+FV ++ + P + L+ +
Sbjct 468 TKDDKDLYLYYFLLRYPGRSIVFVN------SIDSIRRLLPLFTLLQLPVFPLHSH---- 517
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ + LD FK++ ILIAT VA G+DI Q + V+ + I GR
Sbjct 518 --LQQKQRLKNLDRFKSN-PKGILIATDVAARGLDIPQVDHVVHFNLPRTADAYIHRSGR 574
Query 731 -GRARGSKCF--LLTSNAGVIEKEQINMYKEK 759
RA+ L++ + +++ + +
Sbjct 575 TARAQNEGFALQLVSPDEKSVQRALMKSLERT 606
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 66/203 (33%), Gaps = 24/203 (12%)
Query 193 KDVETEDLEDKMETSDIQIFYQED-PECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELA 251
+D+ D E+ D F + PE ++S + ++ +P Q
Sbjct 147 EDLNAADEEEHPNLDDEPAFNDDLLPEWSSISLHPSLKRSFLASSFTAPTAI---QSRAI 203
Query 252 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-----KVVFFANQIPVYEQQ 306
+ G++ + A TG GKT L H+L + + G + + Q
Sbjct 204 PAGITGRDVVGVAETGSGKTLAYSLPILHYLLGQRKSKAGIKRPLSALVLCPTRELALQV 263
Query 307 KSVFSKYF-------------ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ V + G + + D+I+ TP L +
Sbjct 264 MDHLNALLKHALATPDGEKPQGPPRVSVGSVVGGLSAQKQKRILERGCDVIVATPGRLWD 323
Query 354 NLKKGTIPSLSIFTL--MIFDEC 374
+K + S+ TL ++ DE
Sbjct 324 LIKADDELATSVRTLRFLVIDEA 346
>sp|P20703|UVSW_BPT4 ATP-dependent DNA helicase uvsW OS=Enterobacteria
phage T4 OX=10665 GN=uvsW PE=1 SV=2
Length=587
Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/217 (19%), Positives = 82/217 (38%), Gaps = 30/217 (14%)
Query 208 DIQIFYQEDPECQNLSENSCPPSEVSDTNLYS---PFKPRNYQLELALPAMKGKNTIICA 264
D QI +E+ ++ E +S +YS +P YQ + + + I+
Sbjct 82 DPQINEKEELSRKDFDE------WLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNL 135
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
PT GK+ + L+ ++L+ + +GK++ + Q F Y + I
Sbjct 136 PTSAGKSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191
Query 325 SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN 384
G +++ ++ + +++ T Q +V K+ S F +M+ DECH + +
Sbjct 192 GGGASKD---DKYKNDAPVVVGTWQTVVKQPKEWF----SQFGMMMNDECHLATGK---- 240
Query 385 MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
+ GL+ S+ G A
Sbjct 241 ------SISSIISGLNNCMFKFGLSGSLRDGKANIMQ 271
>sp|A1CHL3|PRP28_ASPCL Pre-mRNA-splicing ATP-dependent RNA helicase
prp28 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612
GN=prp28 PE=3 SV=1
Length=798
Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/227 (18%), Positives = 82/227 (36%), Gaps = 25/227 (11%)
Query 550 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR--------FEEKLQELESVS 601
D+ A M+ ++ + + I + +R E + +E
Sbjct 554 DSDEAENSAAMRSHRYRQTMMYTATMPSAVERIARKYLRRPAIVTIGSAGEAVDTVEQRV 613
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ E+ + + L IL P I+FV + DA+ I+
Sbjct 614 ELIAGEDKRKKRLADILSSGEFRPP---IIVFVNIKRNCDAIAREIK------------H 658
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G + T ++ L + + +G ++L+AT +A GID+ +LV+ + ++
Sbjct 659 MGFSSVTLHGSKTQDQREAALASVR-NGSTDVLVATDLAGRGIDVPDVSLVVNFNMATSI 717
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
GR R K + + G + + + K+ +M I R+
Sbjct 718 ESYTHRIGR-TGRAGKSGVAITFLGNEDADVMYDLKQMLMKSPISRV 763
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/209 (21%), Positives = 78/209 (37%), Gaps = 13/209 (6%)
Query 176 EKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDT 235
E RN+ + W EK ++ + D E +I P E S P + +
Sbjct 322 ESTRNQLDKHWS-EKKLEHMRERDWRIFKEDFNISTKGGSVPNPMRSWEESGLPKRLLEL 380
Query 236 NLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKT---------FVSLLICEHHLKKF 285
+ +P Q A++ ++ I A TG GKT +++ L +
Sbjct 381 VDRVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYIAELPRIDEFEW- 439
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIII 345
+ + A + +Q + K+ + G+ V I G + + +III
Sbjct 440 RKNDGPYAIVLAPTRELAQQIEIEAKKFTQPLGFNVVSIVGGHSLEEQAYSLRNGAEIII 499
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
TP LV+ +++ + LS +I DE
Sbjct 500 ATPGRLVDCIERRILV-LSQCCYIIMDEA 527
>sp|Q4I7F9|PRP28_GIBZE Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657
/ FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=PRP28 PE=3
SV=1
Length=721
Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 17/178 (10%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E + +E S E+ + + L IL P I+FV + DA+ I+
Sbjct 528 GEAVDTVEQRVEFVSGEDRRKKRLQEILSSGNFGPP---IIVFVNIKRNCDAVARDIKQ- 583
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + T ++ L + +A G +L+AT +A GID+ +
Sbjct 584 -----------MGWSAVTLHGSKTQEQREAALGSVRA-GHTQVLVATDLAGRGIDVPDVS 631
Query 711 LVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
LV+ + N+ GR R K + + G + E + K+ + SI ++
Sbjct 632 LVVNFNMATNIESYTHRIGR-TGRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKV 688
Score = 72.9 bits (177), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/247 (20%), Positives = 92/247 (37%), Gaps = 21/247 (9%)
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLALE---KERNKFSELWIVEKGIKDVETEDLEDK 203
G A K + + + D EN + + +E + R+K + +G+ +E D
Sbjct 203 GAEERARKRAKMIAQRDPENGKERAEGIMEDFFRARDKARQRAD-RRGLGKHWSEKSLDD 261
Query 204 METSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALP 253
M D +IF ++ P ++NL P Q
Sbjct 262 MRERDWRIFKEDFGIATKGGMIPNPMRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPI 321
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQQK 307
A++ ++ I A TG GKT LL ++ P + + A + +Q +
Sbjct 322 ALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDGPYALIMAPTRELVQQIE 381
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+ K+ G+RV I G + + +I++ TP L++ +++ + LS
Sbjct 382 TEARKFAGPLGFRVVSIVGGHQIEEQAYNLRDGAEIVVATPGRLLDCIERRLLV-LSQCC 440
Query 368 LMIFDEC 374
+I DE
Sbjct 441 YVIMDEA 447
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1
OS=Homo sapiens OX=9606 GN=HFM1 PE=1 SV=2
Length=1435
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/171 (23%), Positives = 75/171 (44%), Gaps = 13/171 (8%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSKYFE 315
+N +ICAPTG GKT V L L + P K+V+ A + Q+ + + F
Sbjct 296 DRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFG 355
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL-SIFTLMIFDEC 374
G ++G T + E +++ II+ TP+ + +K SL + L + DE
Sbjct 356 PIGLNCKELTGDTVMDDLFE--IQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEV 413
Query 375 HNTSK--QHPYNMIMFNYLD------QKLGGSSGPLP-QVIGLTASVGVGD 416
H + P ++ + + Q L +S +P + + ++A++ +
Sbjct 414 HIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAE 464
>sp|A3LSN3|DRS1_PICST ATP-dependent RNA helicase DRS1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DRS1 PE=3 SV=3
Length=741
Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/193 (17%), Positives = 72/193 (37%), Gaps = 22/193 (11%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L F L ++ ++ ++FV + L+ + L G + +
Sbjct 457 ALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVLG------------LLGMKVSELHGS 504
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRG 729
+T + ++ FK +LI T +A G+DI + +VI Y+ + + +
Sbjct 505 LTQEQRLNNVNDFKKL-IVPVLICTDLAARGLDIPKIEIVINYDMPKSHEVYLHRVGRTA 563
Query 730 RGRARGSKCFLL---TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT- 785
R G+ + TS+ +++ ++ ++ ++ R W + KI+ +
Sbjct 564 RAGRDGTSISFVGESTSDRNIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQE 623
Query 786 --HEKFIRDSQEK 796
E + Q K
Sbjct 624 IIEEVLDEEKQAK 636
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 2/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKVVFFANQIPVYEQQKSVFSK 312
A+ G++ + A TG GKT ++ L P +V+ + Q V K
Sbjct 256 ALLGRDIVAGAVTGSGKTAAYMIPIIERLLYKPSKVASTRVIVLTPTRELAIQVGDVGKK 315
Query 313 YFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ G++ EQ +++ D++I TP L+++++ S+ +++
Sbjct 316 IGQFVNNLNFGLAVGGLNLRQQEQQLKSRPDVVIATPGRLIDHIRNSPSFSIDSLEVLVI 375
Query 372 DEC 374
DE
Sbjct 376 DEA 378
>sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58,
chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600
PE=2 SV=2
Length=438
Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 26/290 (9%)
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
I+ R F Q ++ + + +F + R + S + + I +
Sbjct 172 QMIEKRAFSLQSMR--VLVIDEVDFIFGSSKQVSSLRKILTSYSAASSRQTIFASASIPQ 229
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
H R F + + + D+ +Q + S + K E L
Sbjct 230 HNR----------FVHDCVQHKWTKT--DVVHVHVNPVQPMPSHLQHKYAICSKKERL-H 276
Query 617 ILQEEYHLNPETITILFV-KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+FV + + + FL+ + M
Sbjct 277 VLLSLLEKDAPKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNF 336
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
A+ K G +L++T +A G D+ Q + + ++ I + GR GR
Sbjct 337 NARATSFTEVKGKGF--LLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREP 394
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
SK + I + ++ L+ E + E +
Sbjct 395 FSKLACSVTT-------LITEDEHFVLQRFQNELKFHCEELPVESMFAFN 437
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 41/120 (34%), Gaps = 3/120 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G++ I+ A TG GKT LL + + VV + Q V
Sbjct 76 LSGQDCILHAQTGSGKTLAYLLSVFSAIDFGRSSVQALVV--VPTRELGMQVTKVARILA 133
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G E II+ T L ++K SL +++ DE
Sbjct 134 AKACTVMALLDGGMLRRQKSWVKAEPPAIIVATVASLCQMIEKRAF-SLQSMRVLVIDEV 192
>sp|Q54BD6|DDX51_DICDI Probable ATP-dependent RNA helicase ddx51
OS=Dictyostelium discoideum OX=44689 GN=ddx51 PE=3 SV=1
Length=563
Score = 77.5 bits (189), Expect = 2e-13, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 123/339 (36%), Gaps = 26/339 (8%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL---SQIQNREFG 505
++ +V P + + + KY+ ++ + + L ++ +D + S Q+ +
Sbjct 148 VDIIVSTPGRIVDHINETLGFTLKYLNYLVIDEADRLLRQSFQDWLEIVIDSTNQHSDLN 207
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
Q+ EQ I K + E+S K +HL +++ ++ +
Sbjct 208 QQQEEQLIKYNSKGDIEL-----FEKSISLKDNNNQMNHLC-WSEFKLVKLLLSATMTYN 261
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
K + A F + ++ E ++ P + L I+ E N
Sbjct 262 PSKISLLQLNAPLFFTTSKTKEIKYSMPSTLKECYIISNGDQKPLV--LLNIIYESLLKN 319
Query 626 PET-----ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
I F K+ + L ++ ++ LK ++ ++ +
Sbjct 320 NANGENKKKIICFTKSVDITHRLNTLLKLIGQVDKLKFTC------EEYSSSLSTVERAD 373
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL 740
+L FK + +ILI + + G+DI ++VI Y N+ + GR AR +
Sbjct 374 LLSRFKLN-QIDILICSDIMSRGMDIQDIDVVINYNTPPNITLYVHRVGR-TARAGNFGV 431
Query 741 LTSNAGVIE-KEQINMYKEKMMNDSILRLQTWDEAVFRE 778
+ E K I+M K+ + ++ L W V+ +
Sbjct 432 SYTIVDKSEIKYYISMMKKAERSQTLHCL-KWKPNVYEK 469
Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 55/142 (39%), Gaps = 16/142 (11%)
Query 247 QLEL--ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
Q E+ + +G + +CAPTG GKT + + K + V +
Sbjct 42 QQEIVPFINRTEGHDICVCAPTGSGKTLAYAIPLVQKIVKRVVRRVRVAV-IVPTHDLVI 100
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN------------DIIILTPQILV 352
Q + F + V + G ++ + +++N+ DII+ TP +V
Sbjct 101 QVEKTFQSIIKGTDLVVLSL-GVKPFHIEQKLLIKNHSYGEHALYESLVDIIVSTPGRIV 159
Query 353 NNLKKGTIPSLSIFTLMIFDEC 374
+++ + +L ++ DE
Sbjct 160 DHINETLGFTLKYLNYLVIDEA 181
>sp|Q6FIL3|HAS1_CANGA ATP-dependent RNA helicase HAS1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=HAS1 PE=3 SV=1
Length=494
Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/300 (17%), Positives = 100/300 (33%), Gaps = 46/300 (15%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ F + R
Sbjct 84 LLPTIELLHSLKFKPRNGTGVIIITPTRELALQIFGVVRELMEFHSQTFGIVIGGANRR- 142
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L+++ R+ D L K F F N++A DE ++ L FE++
Sbjct 143 -----QEAEKLMKGVN-LLVATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDE 196
Query 594 LQELESVSRDPSNENP--------KLEDL-----------CFILQEEYHLNPET--ITIL 632
++++ + + ++ K+EDL ++ E + +
Sbjct 197 MRQIIKILPNEDRQSMLFSATQTTKVEDLSRISLRPGPLFINVVSEHDSSTADGLEQGYV 256
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQK 679
++ L ++++ N K + L+ + QK
Sbjct 257 VCESDKRFLLLFSFLKRNQKKKII--VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 314
Query 680 CILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + + ILI T VA G+DI + +I ++ + I GR R K
Sbjct 315 RTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNGK 374
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/189 (21%), Positives = 70/189 (37%), Gaps = 14/189 (7%)
Query 195 VETEDLEDKMETSDIQIF----YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL 250
+T+ D+ E ++ + + S P + +S P Q
Sbjct 2 AQTKRSRDESEKEEVVVKADVESSDVDHSFKSLNLSQPTMRAIEKMGFSKMTP--VQART 59
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLI---CEHHLKKFPQGQKGKVVFFANQIPVYEQQK 307
P M G++ + A TG GKT LL H LK P+ G V+ + Q
Sbjct 60 IPPLMAGRDVLGAAKTGSGKTLAFLLPTIELLHSLKFKPRNGTG-VIIITPTRELALQIF 118
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSI 365
V + E H + G E++++ ++++ TP L+++L+ G I
Sbjct 119 GVVRELMEFHSQTFGIVIGGANRRQEAEKLMKGVNLLVATPGRLLDHLQNTKGFIFK--N 176
Query 366 FTLMIFDEC 374
++ DE
Sbjct 177 LKALVIDEA 185
>sp|Q81DF9|CSHE_BACCR DEAD-box ATP-dependent RNA helicase CshE
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=cshE PE=2 SV=1
Length=458
Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 72/197 (37%), Gaps = 20/197 (10%)
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
DE + Q E + +E + ++ K + L F++ + + ++F +T+
Sbjct 201 MDEPQMIQVQSEEVTVDTIEQRVIETTD-RAKPDALRFVMD----RDQPFLAVIFCRTKV 255
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
L + ++G G + + ++ ++ +F+ + LIAT
Sbjct 256 RASKLYDNLKG------------LGYNCAELHGDIPQAKRERVMKSFREA-KIQYLIATD 302
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL-LTSNAGVIEKEQINMY 756
VA G+D+ V Y+ +V I GR GRA GS + + E+I
Sbjct 303 VAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKT 362
Query 757 KEKMMNDSILRLQTWDE 773
+ I+
Sbjct 363 LGAPIQREIIEQPKIKR 379
Score = 64.4 bits (155), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/121 (24%), Positives = 53/121 (44%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ I A TG GKT +L + P+ + + A + Q + K
Sbjct 40 LSGKDIIGQAKTGTGKTLAFVLPILEKID--PECSDVQALIVAPTRELALQITTEIKKML 97
Query 315 -ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+R V I G + ++ N I++ TP L++++++ TI LS + ++ DE
Sbjct 98 VQREDINVLAIYGGQDVAQQLRKLKGNTHIVVATPGRLLDHIRRETID-LSNLSTIVLDE 156
Query 374 C 374
Sbjct 157 A 157
>sp|Q974S1|HELS_SULTO ATP-dependent DNA helicase Hel308 OS=Sulfurisphaera
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140
/ 7) OX=273063 GN=hel308 PE=1 SV=1
Length=704
Score = 77.9 bits (190), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + GK ++ +PT GKT ++ L ++L + GK ++ + +
Sbjct 31 QSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYL----LSKGGKAIYITPLRALTNE 86
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ + F +E G + SG + +EN DII+ T + L ++L + L+
Sbjct 87 KYNTFKD-WETLGIKTGMTSGDYDTDDAW---LENYDIIVTTYEKL-DSLWRHKAKWLNE 141
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + DE H P + + V+GL+A++ G
Sbjct 142 VSYFVLDEFHY--LNDPERGPTVE----SVAIRAKKRGIVLGLSATISNGK 186
>sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) OX=227321 GN=dbp10 PE=3 SV=1
Length=936
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/202 (20%), Positives = 69/202 (34%), Gaps = 27/202 (13%)
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
+A + A + AL Y+ + + + + + E+ + +
Sbjct 305 DLQNAFFSVKSAEKEGALLYILNEVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERA 364
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
N K + TI+F T+ VD L + + G
Sbjct 365 VNMK------------ESPTKHSTIVFAATKHHVDYLYSLLRE------------AGFAV 400
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ + A+K + F+ +G NIL+ T VA GIDI VI Y++ +
Sbjct 401 SYVYGSLDQTARKIQVQNFR-TGISNILVVTDVAARGIDIPILANVINYDFPSQPKIFVH 459
Query 727 TRGR-GRA-RGSKCFLLTSNAG 746
GR RA R + L +A
Sbjct 460 RVGRTARAGRKGWSYSLVRDAD 481
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M+ ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 126 MEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELG 185
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 186 KGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLH-LKVEMNLDLSSIKYVVFDEA 244
>sp|Q6CSZ7|DHH1_KLULA ATP-dependent RNA helicase DHH1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DHH1 PE=3 SV=1
Length=514
Score = 77.1 bits (188), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (35%), Gaps = 18/167 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 261 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITE------------LGFSCYYSHARMK 308
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 309 QSERNKVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 367
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREK 779
G L + + ++ N+YK E+ +N I + D++++ +
Sbjct 368 G---HLGLAINLINWNDRFNLYKIEQELNTEIAPIPSQIDKSLYVAE 411
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ GK+ + A G GKT + + K P+ K + +
Sbjct 58 KPSPIQEEAIPVAIAGKDILARAKNGTGKT--AAFVIPTLEKVKPKLNKIQALIMVPTRE 115
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +G T + ++ E I++ TP +++ L +
Sbjct 116 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHILVGTPGRVLD-LASRRVT 174
Query 362 SLSIFTLMIFDEC 374
LS L I DE
Sbjct 175 DLSECHLFIMDEA 187
>sp|Q3IU46|HELS_NATPD ATP-dependent DNA helicase Hel308 OS=Natronomonas
pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997
/ JCM 8858 / NBRC 14720 / NCIMB 2260 / Gabara) OX=348780
GN=hel308 PE=3 SV=1
Length=747
Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 23/202 (11%)
Query 221 NLSENSCPPSEVSD----TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
++SE S P +D + S + P+ + G++ + PT GKT V+ L
Sbjct 2 DVSEVSGVPPWFADHLREEGIESLYPPQA--AAVDAGVADGESLVASVPTASGKTLVAQL 59
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
+ + G ++ + +++ F+ FE +G V +G+ + +
Sbjct 60 AMLSAIDR-----GGTALYIVPLRALASEKREEFAA-FEEYGLSVGVTTGSYED---TGE 110
Query 337 IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLDQK 394
+ + DII+ T + + + ++ G P + ++ DE H +H P + L +
Sbjct 111 WLADKDIIVATSEKVDSLVRNGA-PWIDDLDCVVADEVHLVDDEHRGPTLEVTLAKLRRV 169
Query 395 LGGSSGPLPQVIGLTASVGVGD 416
P QV+ L+A+VG
Sbjct 170 -----NPNLQVVALSATVGNAG 186
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus
OX=10090 GN=Ddx21 PE=1 SV=3
Length=851
Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ TI+F +T+ L + + + + ++ L F+
Sbjct 510 QGRTIIFCETKKDAQELSQ-------------NTCIKQDAQSLHGDIPQKQREITLKGFR 556
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+G+ +L+AT+VA G+DI + +LV+ +V I GR G
Sbjct 557 -NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAG 604
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (47%), Gaps = 7/122 (6%)
Query 257 GKNTIICAPTGCGKTF-VSLLICE---HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
GK+ I A TG GKTF ++ + E L++ +G+ +V+ A + Q FS
Sbjct 295 GKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSKDFSD 354
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
++ V G T +E++ DI++ TP + ++L+ G + L+ ++ D
Sbjct 355 ITKKLS--VACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD-LTKLKHVVLD 411
Query 373 EC 374
E
Sbjct 412 EV 413
>sp|Q3B8Q1|DDX21_RAT Nucleolar RNA helicase 2 OS=Rattus norvegicus
OX=10116 GN=Ddx21 PE=2 SV=1
Length=782
Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ TI+F +T+ L + + + + ++ L F+
Sbjct 434 QGRTIIFCETKKDAQELSQ-------------NTCIKQDAQSLHGDIPQKQREITLKGFR 480
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+G+ +L+AT+VA G+DI + +LV+ +V I GR G
Sbjct 481 -NGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAG 528
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 70/186 (38%), Gaps = 16/186 (9%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPR------NYQLELAL 252
D + +E P Q S P L K R Q +
Sbjct 158 DSSSTQAPGEESETEKEIPVEQKEGAFSNFPISEETVKL---LKARGVNFLFPIQAKTFH 214
Query 253 PAMKGKNTIICAPTGCGKTF-VSLLICE---HHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
GK+ I A TG GKTF ++ + E L++ +G+ +V+ A + Q
Sbjct 215 HVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRELANQVSK 274
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
FS ++ V G T +E++ DI++ TP + ++L+ G + L+
Sbjct 275 DFSDITKKLS--VACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLD-LTKLKH 331
Query 369 MIFDEC 374
++ DE
Sbjct 332 VVLDEV 337
>sp|A1D1E3|ROK1_NEOFI ATP-dependent RNA helicase rok1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rok1
PE=3 SV=1
Length=738
Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 19/260 (7%)
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
LS + + T + IV + +A ++ +D+ I +A ++ + +
Sbjct 375 LSANRTKPMATLPLVRNIV-LDEADVLLDELFRDQTLDIWRACTHPELRASLWSATMGSN 433
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
K + K + + + L ++ + E KL L
Sbjct 434 IEDLAKSTIKERKQAYDRTNSYPLLRLVVGLKDSAIPNIEH---KLVYAATEQGKLLGLR 490
Query 616 FILQEEYHLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-N 670
+L + ++F +T + I + +L + P G + +
Sbjct 491 QLLHPAAASASDVRLRPPFLIFTQT------IPRAIALHSELRYDIPAEAGGSSRIAVLH 544
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQT 727
+ ++ + I+ F+ G+ IL+ T + G+D N V+ Y+ + + +
Sbjct 545 SDLSDGQRSEIMKNFR-KGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGR 603
Query 728 RGRGRARGSKCFLLTSNAGV 747
GR G + +
Sbjct 604 TGRAGREGGIAVTYYTKEDI 623
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/154 (17%), Positives = 52/154 (34%), Gaps = 38/154 (25%)
Query 259 NTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVF---FANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT L+ + + + + ++ + +F A + Q + K
Sbjct 244 DLLVVAPTGSGKTLSFLIPVINKIVRHHHEQEEERGIFSVVVAPTKELASQIVNEGRKLV 303
Query 315 ERHGYRVTGISGATAENVPV-------------------------------EQIVENNDI 343
G ++T + + V +DI
Sbjct 304 HGTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSESEQDEPSTTRKKKGKAPVTKSDI 363
Query 344 IILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
++ TP +LVN L ++ L ++ DE
Sbjct 364 LVTTPLLLVNALSANRTKPMATLPLVRNIVLDEA 397
>sp|Q99MJ9|DDX50_MOUSE ATP-dependent RNA helicase DDX50 OS=Mus
musculus OX=10090 GN=Ddx50 PE=2 SV=1
Length=734
Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 14/112 (13%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
E I+F +T+ V + NP + + + + ++ L
Sbjct 383 SGSEGRAIIFCETKKNVTEMA----MNPHIK---------QNAQCLHGDIAQSQREITLK 429
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
F+ G +L+AT+VA G+DI + +LVI +V I GR G
Sbjct 430 GFR-EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 480
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/169 (22%), Positives = 69/169 (41%), Gaps = 8/169 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG----QKGKVVFFANQIPV 302
Q++ P +GK+ I A TG GKTF + L++ + + KV+ A +
Sbjct 161 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 220
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q F + V G T+ + QI DI++ TP + ++L+ G +
Sbjct 221 ANQVAKDFKDITRKLS--VACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLD- 277
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
LS ++ DE + + + + + + S PQ + +A+
Sbjct 278 LSKLRHVVLDEV-DQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSAT 325
>sp|A6R603|SUB2_AJECN ATP-dependent RNA helicase SUB2 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=SUB2 PE=3
SV=2
Length=442
Score = 76.7 bits (187), Expect = 3e-13, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 21/155 (14%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L I+FVK+ L + + +F + +G
Sbjct 287 ESEKNRKLNELLDSLEF----NQVIIFVKSTQRASELDKLLR---ECNFPSIAVHSGVS- 338
Query 667 TNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
Q+ + +K + N I +AT V GIDI + NL I Y+ +
Sbjct 339 -----------QEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSY 387
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+K ++ + ++E + +++
Sbjct 388 LHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKR 422
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 11/139 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P ++ +
Sbjct 81 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--ILVMCHTRE 138
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND---IIILTPQILVNNL 355
+ Q + + FSKY + G T +E + + I++ TP L N L
Sbjct 139 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRL-NAL 195
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL + DEC
Sbjct 196 VRDKKLSLRNIKAFVLDEC 214
>sp|Q4WRV2|DRS1_ASPFU ATP-dependent RNA helicase drs1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=drs1 PE=3 SV=1
Length=830
Score = 77.5 bits (189), Expect = 3e-13, Method: Composition-based stats.
Identities = 58/357 (16%), Positives = 117/357 (33%), Gaps = 39/357 (11%)
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+V D+ E L + + K ++ S A M D++D L N
Sbjct 459 ILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS--ATMTDSVDKLIRVGLNRPVRLM 516
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
+ +++ + ++ L P E+ +L L ++ E Y I+F + +
Sbjct 517 VDSKKNTSMNLTQEFVRLR-----PGREDKRLGYLLYLCNEIYT----GRVIVFFRQKRE 567
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
++ L G + M+ + ++ F+ G L+AT +
Sbjct 568 AHRVRIVFG------------LLGLKAAELHGSMSQEQRIKSVENFR-EGKVAFLLATDL 614
Query 700 ADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
A G+DI VI YE + + + R G C + I K +
Sbjct 615 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKIVKSAVKAG 674
Query 757 K-------EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK--- 806
K ++++ ++ ++I + EK + + V EN
Sbjct 675 KAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVTKGENLIKH 734
Query 807 --KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAK 861
+++ R + D R + T L K+ V + K+ +R +
Sbjct 735 EAEIMSRPKRTWFETERDKRAARKLGATELNGPSKKDKVKLSNKDKKRLDDARQRHE 791
Score = 73.3 bits (178), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 332 TPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTR 391
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K + G + + + D+II TP +++++
Sbjct 392 ELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS 451
Query 361 PSLSIFTLMIFDEC 374
++ +++ DE
Sbjct 452 FTVDTLEILVLDEA 465
>sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo
sapiens OX=9606 GN=DDX50 PE=1 SV=1
Length=737
Score = 77.5 bits (189), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 14/112 (13%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
E I+F +T+ V + NP + + + + ++ L
Sbjct 386 SGSEGRAIIFCETKKNVTEMA----MNPHIK---------QNAQCLHGDIAQSQREITLK 432
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
F+ G +L+AT+VA G+DI + +LVI +V I GR G
Sbjct 433 GFR-EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAG 483
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 8/169 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG----QKGKVVFFANQIPV 302
Q++ P +GK+ I A TG GKTF + L++ + + KV+ A +
Sbjct 164 QVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTREL 223
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q F + V G T+ + I DI++ TP + ++L+ G +
Sbjct 224 ANQVAKDFKDITRKLS--VACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLD- 280
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
LS ++ DE + + + + + + S PQ + +A+
Sbjct 281 LSKLRHVVLDEV-DQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSAT 328
>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DHH1 PE=3 SV=1
Length=512
Score = 76.7 bits (187), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 86/268 (32%), Gaps = 35/268 (13%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL----FVKTR 637
IEQ L+ +++ L S + ++ K + + + I FV+ R
Sbjct 210 IEQLLSFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDELTLRGITQYYAFVEER 269
Query 638 ALVDALKNWIEGNPKLSFL-------KPGILT------GRGKTNQNTGMTLPAQKCILDA 684
V L + + +L G + M + +
Sbjct 270 QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHARMLQQNRNRVFHD 329
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSN 744
F+ +G L+ + + GIDI N+VI +++ N + GR R L +
Sbjct 330 FR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-RFGHLGLAINL 387
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
++ + ++++ + + D+ ++ + P+ +P
Sbjct 388 INWDDRYNLYKIEQELGTEIQPIPPSIDKKLYV----------------YDTPETIPRPI 431
Query 805 NKKLLCRKCKALACYTADVRVIEECHYT 832
R A ++D + + H+
Sbjct 432 ANASTERNPPAQLAQSSDNQNHRQAHHI 459
Score = 66.0 bits (159), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 53/133 (40%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERTNPKISKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + II+ TP +++ KG +
Sbjct 127 LALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLSDTVHIIVGTPGRILDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS T + DE
Sbjct 186 DLSECTTFVMDEA 198
>sp|A1CTZ6|DBP10_ASPCL ATP-dependent RNA helicase dbp10 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp10 PE=3
SV=1
Length=935
Score = 77.5 bits (189), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/265 (20%), Positives = 87/265 (33%), Gaps = 34/265 (13%)
Query 484 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTS 543
A ++ + L L + + T+ K+ + F E + I S
Sbjct 249 GFAAQLTEILHGLPPNRQTLLFS-------ATLPKSLVEFARAGLQEPTLIRLDTESKIS 301
Query 544 HLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD 603
+A + + + AL Y+ + + +Q ++ E S
Sbjct 302 P--DLQNAFFSIKSSEKEGALLYILHEVIKMPTGPTEMAQQ----------RQGEDASAR 349
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
S N + + TI+F T+ VD L + + G
Sbjct 350 FSKANKRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYLYSLLHE------------AG 397
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ + A+K + F+ SG NIL+ T VA GIDI VI Y++
Sbjct 398 FAVSYVYGALDQTARKIQVQNFR-SGLSNILVVTDVAARGIDIPILANVINYDFPSQPKI 456
Query 724 MIQTRGR-GRA-RGSKCFLLTSNAG 746
I GR RA R + L +A
Sbjct 457 FIHRVGRTARAGRKGWSYSLVRDAD 481
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 44/120 (37%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M ++ + A TG GKT ++ L+ + + + + Q V +
Sbjct 124 MDDQDVVGMARTGSGKTAAFVIPMIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELG 183
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DI+I TP ++ LK L ++FDE
Sbjct 184 KGTDLKCVLLVGGDSLEEQFTMMAGNPDIVIATPGRFLH-LKVEMNLDLYSIRYVVFDEA 242
>sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6
OS=Xenopus tropicalis OX=8364 GN=ddx6 PE=2 SV=1
Length=481
Score = 76.7 bits (187), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/177 (16%), Positives = 61/177 (34%), Gaps = 20/177 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 321 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 368
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 369 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 427
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
G L+T + ++ + +E++ + + D++++ + +K
Sbjct 428 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSSIDKSLYVAEYHSESGEDK 480
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/391 (17%), Positives = 127/391 (32%), Gaps = 30/391 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + V+
Sbjct 117 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVI--VPTRE 174
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 175 LALQVSQICIQVSKHMGGVKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 233
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 234 AKVDHIQMIVLDEADKLLSQD-FVQIMEDII-----ITLPKNRQILLYSATFPLSVQKFM 287
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
L Y L L + + E Q V+ F +++ S F
Sbjct 288 TSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNS---- 342
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ E LAK+I + + I + + + C +C L
Sbjct 343 SQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNL----------VCTDL 392
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
F ++ N + K A YL + R +T L+ +E
Sbjct 393 FTRGIDIQAVNVVINFDF---PKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIE 449
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
P D + E + + E
Sbjct 450 EQLGTEIKPIPSSIDKSLYVAEYHSESGEDK 480
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46
OS=Danio rerio OX=7955 GN=ddx46 PE=2 SV=1
Length=1018
Score = 77.5 bits (189), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 23/157 (15%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVD-ALKNWIE-GNPKLSFLKPGILTG 663
E K L IL H + I+FV + D LK+ ++ P +S
Sbjct 569 EEEKKFLKLLEIL---GHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCMSL-------- 617
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ G+ + I++ FK +G +L+ATSVA G+D+ Q LV+ Y +
Sbjct 618 ------HGGIDQYDRDSIINDFK-NGACRLLVATSVAARGLDVKQLILVVNYSCPNHYED 670
Query 724 MIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ GR +G +T + + +
Sbjct 671 YVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALE 707
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 55/138 (40%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFAN 298
KP Q + M G++ I A TG GKT LL H+ + + V
Sbjct 362 KPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTP 421
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--K 356
+ Q K+ + RV + G T + + ++ +II+ TP +++ L
Sbjct 422 TRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGAN 481
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 482 NGRVTNLRRVTYVVIDEA 499
>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58,
chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1
Length=472
Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/341 (13%), Positives = 98/341 (29%), Gaps = 29/341 (9%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV 516
V++ I + + Q+ + LA + D++ + + + GT + + +
Sbjct 139 NPQRSSVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKA 198
Query 517 QKAC---------------MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
+ +F++ Y+S L+ S + K
Sbjct 199 EPPAILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDK 258
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN-----PKLEDLCF 616
+ + D I+Q T+R + + + K
Sbjct 259 RQTVFASASIPQHKHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNK-HQ 317
Query 617 ILQEEYHLNPETITILFV-KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + I+FV + N + FLK M
Sbjct 318 VLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNF 377
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
++ L + G +L++T +A GID+ + + ++ V + GR +
Sbjct 378 NSRAASLTEIRQGGGF-LLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKP 436
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
S+ I I + ++ L E +
Sbjct 437 ------FSDRKCIVANLITSEERFVLQRYENELMFSCEEMM 471
Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 49/138 (36%), Gaps = 9/138 (7%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
P + Q E G++ I+ A TG GKT LL+ + PQ + V +
Sbjct 99 PTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLIN--PQRSSVQAVIVVPTREL 156
Query 303 YEQQKSVFSKYFERHGYRVTGIS---GATAENVPVEQIVENND---IIILTPQILVNNLK 356
Q V + V G + + + + I++ T L + L+
Sbjct 157 GMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLE 216
Query 357 KGTIPSLSIFTLMIFDEC 374
K I + +++ DE
Sbjct 217 K-HIFRIDSVRVLVVDEV 233
>sp|Q9HMV6|HELS_HALSA ATP-dependent DNA helicase Hel308 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
OX=64091 GN=hel308 PE=3 SV=1
Length=783
Score = 77.1 bits (188), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 69/177 (39%), Gaps = 17/177 (10%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ----KGKVVFFANQIP 301
Q E + +G N + PT GKT ++ L + + G ++
Sbjct 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ ++ F FER G V +G + + +NDI++ T + + + ++ G
Sbjct 89 LAGEKAQEFEA-FERFGLSVGVSTGNYERDGAR---LADNDIVVATSEKVDSLVRNGA-G 143
Query 362 SLSIFTLMIFDECHNTSKQH--PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + ++ DE H H P + L Q++ QV+ L+A+VG
Sbjct 144 WIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADL-----QVVALSATVGNAG 195
>sp|B0R7Q2|HELS_HALS3 ATP-dependent DNA helicase Hel308 OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) OX=478009
GN=hel308 PE=3 SV=1
Length=783
Score = 77.1 bits (188), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 69/177 (39%), Gaps = 17/177 (10%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ----KGKVVFFANQIP 301
Q E + +G N + PT GKT ++ L + + G ++
Sbjct 29 QAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRA 88
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ ++ F FER G V +G + + +NDI++ T + + + ++ G
Sbjct 89 LAGEKAQEFEA-FERFGLSVGVSTGNYERDGAR---LADNDIVVATSEKVDSLVRNGA-G 143
Query 362 SLSIFTLMIFDECHNTSKQH--PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + ++ DE H H P + L Q++ QV+ L+A+VG
Sbjct 144 WIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADL-----QVVALSATVGNAG 195
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis
thaliana OX=3702 GN=RH45 PE=3 SV=1
Length=989
Score = 77.5 bits (189), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/173 (21%), Positives = 71/173 (41%), Gaps = 6/173 (3%)
Query 208 DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPT 266
++++ ++ P + S++ DT ++ P Q + M G++ I A T
Sbjct 383 ELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKT 442
Query 267 GCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
G GKT +L H+K P G + A + +Q S K+ + G
Sbjct 443 GSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVP 502
Query 324 ISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPSLSIFTLMIFDEC 374
+ G + + ++ +I++ TP +++ L G I +L T ++ DE
Sbjct 503 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEA 555
Score = 76.7 bits (187), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/131 (20%), Positives = 56/131 (43%), Gaps = 6/131 (5%)
Query 632 LFVKTRALV-DALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+ V R++V + +E P+ F + L G + + +Q+ + FK+
Sbjct 605 IQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQEKSISDFKSD- 663
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAG 746
N+LIATSVA G+D+ + LV+ ++ + + + GR +G ++ +
Sbjct 664 VCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDA 723
Query 747 VIEKEQINMYK 757
+ + +
Sbjct 724 KYAPDLVKALE 734
>sp|A7EAY2|MAK5_SCLS1 ATP-dependent RNA helicase mak5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=mak5 PE=3 SV=1
Length=780
Score = 77.1 bits (188), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/119 (22%), Positives = 46/119 (39%), Gaps = 14/119 (12%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
P T++F + V L ++ + + ++ M A+ ++ F
Sbjct 502 PNQRTLIFTNSIHSVRRLTPMLQTLNIPAH------------SLHSQMIQKARMRSIEKF 549
Query 686 -KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ + ++L+AT VA G+DI LVI Y + GR RA S +L
Sbjct 550 SRTNNTGSVLVATDVAARGLDIGGVQLVIHYHLPRTADMYVHRSGRTARAAASGSSILL 608
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 47/147 (32%), Gaps = 15/147 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSL----LICEHHLKKFPQGQKGK-- 292
KP Q E + G + + A TG GKT + + L L + + +
Sbjct 235 KPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEKWLEVYGELDEDELKKSTRPP 294
Query 293 -VVFFANQIPVYEQQKSVFSKYFE--RHGYRVTGISGATAENVPVEQIVENNDIIILTPQ 349
+ + + Q + + V ++G + Q + DIII TP
Sbjct 295 TALILSPTRELAHQLTEHITTLCKGMPTSPYVAAVTGGLSVQKQQRQ-LSKADIIIGTPG 353
Query 350 ILVNNLKKGT--IPSLSIFTLMIFDEC 374
L + L ++ DE
Sbjct 354 RLWEVISSSNELSAGLKQVRFLVIDEA 380
>sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus
laevis OX=8355 GN=ddx6 PE=1 SV=2
Length=481
Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/177 (16%), Positives = 60/177 (34%), Gaps = 20/177 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 321 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 368
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 369 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 427
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
G L+T + ++ + +E++ + + D+ ++ + +K
Sbjct 428 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSSIDKNLYVAEYHSESGEDK 480
Score = 53.2 bits (126), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 4/134 (3%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + V+
Sbjct 117 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVI--VPTRE 174
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 175 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 233
Query 361 PSLSIFTLMIFDEC 374
+ +++ DE
Sbjct 234 AKVDHIQMIVLDEA 247
>sp|Q754U8|PRP5_EREGS Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Eremothecium gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=PRP5 PE=3 SV=2
Length=855
Score = 77.1 bits (188), Expect = 4e-13, Method: Composition-based stats.
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 20/202 (10%)
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL 624
+ LK F S + + E Q++E S NE K + L L
Sbjct 471 NKLKSFASKILHDPVYITVNSKSLINENIEQKVEIFS----NEEDKFKSLIHWLALTQQN 526
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ TI+FV ++ + D L N +E N G + G + L
Sbjct 527 LNDEKTIVFVSSQQICDILYNRLEAN------------GFTTFAIHAGKIYTERAWNLKC 574
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLL 741
FK + + ILI T V G+++ + +LVI+Y + + T GR R +G+ LL
Sbjct 575 FKETAN-GILICTEVLSRGLNVPEVSLVIIYNAAKTFAQYVHTTGRTARGSNKGTALTLL 633
Query 742 TSNAGVIEKEQINMYKEKMMND 763
+ + +++ +N
Sbjct 634 MNTELAASYILMKSMRDEELNK 655
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/135 (18%), Positives = 47/135 (35%), Gaps = 7/135 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPV 302
Q + M G++ I + TG GKT +L +K + + + +
Sbjct 303 QAQAIPAIMSGRDVIGISKTGSGKTVSFILPLLRQIKAQRPLGGDETGPLGLILSPTREL 362
Query 303 YEQQKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
Q +K+ R +G + + I +I+I TP ++ L G
Sbjct 363 ALQIHEEVTKFTSGDPSIRSLCCTGGSELKRQINDIKRGVEIVIATPGRFIDLLSLNSGN 422
Query 360 IPSLSIFTLMIFDEC 374
+ + ++ DE
Sbjct 423 LINPKRIVFVVMDEA 437
>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP3 PE=3 SV=1
Length=585
Score = 76.7 bits (187), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 20/160 (13%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
+ F + E +R E+ ++ L ++ K L L+ +
Sbjct 368 ESFMNGPVRVTVGSDELSANRRVEQTVEVL-------ADGYAKERRLNDFLRSVNAQRSK 420
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
++F + ++ + G + + + + L+ FK
Sbjct 421 DKILIFALYKKEAQRIEQTLRR------------GGFKVSGIHGDLGQNERIASLERFK- 467
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
S + +L+AT VA G+DI V+ Y + + +
Sbjct 468 SAETPLLVATDVAARGLDIPNVEHVVNYTFPLTIEDYVHR 507
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/295 (19%), Positives = 103/295 (35%), Gaps = 24/295 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL----------KKFPQGQKGKVVFFANQIPVYE 304
++ K+ + A TG GKTF L HL KK +G + V+ A +
Sbjct 194 LQNKDVVGIAETGSGKTFAFGLPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAI 253
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN--NDIIILTPQILVNNLKKGTIPS 362
Q + +K + G + + G ++ V + ++ I++ TP +++ + G++
Sbjct 254 QTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLD- 312
Query 363 LSIFTLMIFDECHNT--SKQHP-YNMIM-----FNYLDQKLGGSSGPLPQVIGLTASVGV 414
LS T ++ DE P I+ S+ P V GL S
Sbjct 313 LSGVTYLVLDEADRMLDKGFEPDIRAIIGMCKSREEGRHTSMFSATWPPAVRGLAESFMN 372
Query 415 GDAKNT--DEALDYICKLCASLDASVIATVKHNL-EELEQVVYKPQKFFRKVESRISDKF 471
G + T + L ++ +++ K + + V + + + + K
Sbjct 373 GPVRVTVGSDELSANRRVEQTVEVLADGYAKERRLNDFLRSVNAQRSKDKILIFALYKKE 432
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
I Q +R I DL +I + E +V A +P
Sbjct 433 AQRIEQTLRRGGFKVSGIHGDLGQNERIASLERFKSAETPLLVATDVAARGLDIP 487
>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DHH1 PE=3
SV=1
Length=522
Score = 76.4 bits (186), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/366 (15%), Positives = 119/366 (33%), Gaps = 56/366 (15%)
Query 453 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQW 512
+ + K+++ I + + Q + ++L K + + + G
Sbjct 87 LQQVNPKVNKIQALIMVPTRELALQTSQVCKTLGKHLGIKVMVTT-------GGTNLRDD 139
Query 513 IVTVQKACMVF---QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
I+ ++ V D + L + D L+ + ++ +
Sbjct 140 IMRLEDTVHVLVGTPGRVLDLAGKGVADLSESPMFIMDEADKLLSPD---FTPIIEQVLH 196
Query 570 FFSNVRAAGFDEI----------EQDLTQRFEEKLQE---LESVSRDPSNENPKLEDLCF 616
FF R +++L + +E L + L +++ + + K + L
Sbjct 197 FFPEDRQILLFSATFPLTVKAFMDRNLHKPYEINLMDELTLRGITQYYAFVDEK-QKL-H 254
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L + +I+F + V+ L I G + M
Sbjct 255 CLNTLFSKLDINQSIIFCNSTVRVELLARKITE------------LGYSCYYSHAKMIQS 302
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
+ + F+ +G L+ + + GIDI N+VI +++ N + GR G
Sbjct 303 HRNRVFHEFR-NGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG- 360
Query 737 KCFLLTSNAGVIEKEQINMYK-EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQE 795
L + + ++ N+YK E+ + I + + I + S+
Sbjct 361 --HLGIAINLINWNDRYNLYKIEQELGTEI-------KPIPA----QIDKNLYVAESSEN 407
Query 796 KPKPVP 801
P+P P
Sbjct 408 IPRPFP 413
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 53/133 (40%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 50 NPSPIQEEAIPIALAGRDILARAKNGTGKT--AAFVIPALQQVNPKVNKIQALIMVPTRE 107
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +V +G T + ++ + +++ TP +++ KG +
Sbjct 108 LALQTSQVCKTLGKHLGIKVMVTTGGTNLRDDIMRLEDTVHVLVGTPGRVLDLAGKG-VA 166
Query 362 SLSIFTLMIFDEC 374
LS + I DE
Sbjct 167 DLSESPMFIMDEA 179
>sp|A7EIX7|SUB2_SCLS1 ATP-dependent RNA helicase sub2 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=sub2 PE=3 SV=1
Length=444
Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L E I+FVK+ L + + +F I +G
Sbjct 286 EEREKNRRLNELLDELSF----NQVIIFVKSTVRATELDKLLR---ECNFPSVAIHSGVS 338
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
Q+ + F D N I +AT V GID+ + NL I Y+ +
Sbjct 339 ------------QEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADS 386
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+K ++ + ++E + +++
Sbjct 387 YLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKR 422
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 9/138 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ G + + A +G GKT V +L ++ V+ +
Sbjct 81 HPSEVQQVCIPQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETS--VLVMCHTRE 138
Query 302 VYEQQKSVFSK-YFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK 356
+ Q ++ + + ++ G + VE +++N + II+ TP L N L
Sbjct 139 LAYQIRNEYQRFCHFMPDVKIGVFYGGVPISKDVE-VLKNPETHPHIIVGTPGRL-NALV 196
Query 357 KGTIPSLSIFTLMIFDEC 374
+ L+ + + DEC
Sbjct 197 RDKYLRLNSVKVFVLDEC 214
>sp|Q0CGJ9|SUB2_ASPTN ATP-dependent RNA helicase sub2 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=sub2
PE=3 SV=1
Length=438
Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/363 (15%), Positives = 112/363 (31%), Gaps = 45/363 (12%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + L + +K+ + + + +
Sbjct 103 LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGT 162
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
I + + + ES + L+ + + + + + V + M+ Q+
Sbjct 163 PIQKDIEVLSNK-----ESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQI 217
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + I +A + K + L+ + + ++Q
Sbjct 218 DMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQY 277
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ E S +N KL DL L I+FVK+ + L
Sbjct 278 YIKLSE-------------SEKNRKLNDLLDNL-------EFNQVIIFVKSTQRANELDK 317
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEG 703
+ + +F + +G Q+ + +K + N I +AT V G
Sbjct 318 LLR---ECNFPSIAVHSGVS------------QEERIKRYKEFKEFNKRICVATDVFGRG 362
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYKEKM 760
IDI + NL I Y+ + + GR G+K ++S + I E
Sbjct 363 IDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVA 422
Query 761 MND 763
+ +
Sbjct 423 LPE 425
Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 52/128 (41%), Gaps = 13/128 (10%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ---QKSVF 310
A+ + + A +G GKT V +L H L+ P V+ + + Q + + F
Sbjct 89 AILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRELAYQIKNEYARF 146
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLKKGTIPSLSIF 366
SKY + G T +E ++ N + I++ TP L N L + SL
Sbjct 147 SKYLPDV--KTAVFYGGTPIQKDIE-VLSNKESYPNIVVGTPGRL-NALVREKKLSLRNV 202
Query 367 TLMIFDEC 374
+ DEC
Sbjct 203 KAFVLDEC 210
>sp|Q6CKI1|PRP5_KLULA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590
GN=PRP5 PE=3 SV=1
Length=812
Score = 77.1 bits (188), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 76/216 (35%), Gaps = 23/216 (11%)
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-- 622
LK F S + E Q ++ E+ K E L L +
Sbjct 440 SKLKHFASRTLKNPIQITINSKSLINENIQQRVQIF----DEEHVKFEFLLKRLSDRLAL 495
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
H + TI+FV ++ L D L + + +L G + G + L
Sbjct 496 HRGEDEKTIIFVGSQQLCDLLYDEL------------LLNGITTFPIHAGKPSAERLRNL 543
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCF 739
FK + D+ ILI T V G+++ + +LVI+Y + + + GRG G
Sbjct 544 QKFKET-DNGILICTEVLSRGLNVPEVSLVIIYNAAKTIAQYVHTVGRTGRGTNNGVALS 602
Query 740 LLTSNAGVIEKEQINMYKEKMMNDSILRL-QTWDEA 774
+ + + KE ++ + + Q E
Sbjct 603 FVMVDELASAYILVKCMKENELSSVPMVVYQKLKEM 638
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 72/190 (38%), Gaps = 11/190 (6%)
Query 195 VETEDLED-KMETSDIQIFYQEDPECQNLSENSCPPSEVSD--TNLYSPFKPRNYQLELA 251
+ +D+E+ ++ +I+I ++ P+ SE+ D +N Q +
Sbjct 218 MSEKDVEELRLSLDNIKISGKDCPKPVTKWSQLGLSSEIMDLISNELQFVTLTPIQCQAI 277
Query 252 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPVYEQ-Q 306
M G++ I + TG GKT LL +K P + + + Q Q
Sbjct 278 PAIMSGRDVIGISKTGSGKTVAFLLPLVRQIKAQPPLAPDETGPIGLILTPTRELAVQIQ 337
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN--NLKKGTIPSLS 364
+ + + G+ + + ++ DII+ TP ++ L G + S +
Sbjct 338 EEALKFCKGSGISSICCVGGSELKQ-QINELKRGVDIIVATPGRFIDLMTLNSGHLLSPT 396
Query 365 IFTLMIFDEC 374
+ ++ DE
Sbjct 397 RISFVVMDEA 406
>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium
discoideum OX=44689 GN=helB2 PE=2 SV=1
Length=834
Score = 76.7 bits (187), Expect = 5e-13, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 65/183 (36%), Gaps = 26/183 (14%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
EN K E L ++++ P I+FV + D + P L +
Sbjct 665 ENDKKEHLTQLIKD----GPPPPIIIFVNKKKHCDIIA------PVLEECRVSYTILHS- 713
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G + ++ L+ FK + +LIAT VA GI + VI ++ N+
Sbjct 714 -----GRSQEQREAALEGFKKR-KYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTH 767
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR GS + I ++M D L + + V E + H +
Sbjct 768 RIGRTGRAGSA---------GLASSFITDKDVEIMYDLKQILTSTNNIVPIELLKHPSSQ 818
Query 787 EKF 789
+K
Sbjct 819 QKH 821
Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/139 (22%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVF 295
KP Q++ ++ G++ + A TG GKT ++ ++ K P+ +
Sbjct 435 KPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALV 494
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A + +Q + + + G+RV + G + Q+ + +III TP L + L
Sbjct 495 MAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCL 554
Query 356 KKGTIPSLSIFTLMIFDEC 374
+K + L+ ++ DE
Sbjct 555 EKRYLV-LNQCNYIVLDEA 572
>sp|A1D1R8|DRS1_NEOFI ATP-dependent RNA helicase drs1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=drs1
PE=3 SV=1
Length=819
Score = 76.7 bits (187), Expect = 6e-13, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 99/310 (32%), Gaps = 34/310 (11%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQEL--ESVSRDPSNENPKLEDLCFILQEEYHLNP 626
D + G + + + + L E V P E+ +L L ++ E Y
Sbjct 488 DSVDKLIRVGLNRPVRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLLYLCNEIYT--- 544
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F + + ++ L G + M+ + ++ F+
Sbjct 545 -GRVIVFFRQKREAHRVRIVFG------------LLGLKAAELHGSMSQEQRIKSVENFR 591
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
G L+AT +A G+DI VI YE + + + R G C +
Sbjct 592 -EGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAE 650
Query 744 NAGVIEKEQINMYK-------EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
I K + K ++++ ++ ++I + EK + +
Sbjct 651 PDRKIVKSAVKAGKAQGAKIVSRVVDPAVADEWAAKAKGLEDEIEEVLQEEKLEKQMAQA 710
Query 797 PKPVPDKENK-----KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPK 851
V EN +++ R + D R + T L K+ V + K
Sbjct 711 EMQVTKGENMIKHEAEIMSRPKRTWFETERDKRAARKLGATELNGPSKKDKVKLSNKDKK 770
Query 852 QFSSFEKRAK 861
+ +R +
Sbjct 771 RLDDARQRHE 780
Score = 73.3 bits (178), Expect = 8e-12, Method: Composition-based stats.
Identities = 25/134 (19%), Positives = 51/134 (38%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 321 TPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTR 380
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K + G + + + D+II TP +++++
Sbjct 381 ELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPS 440
Query 361 PSLSIFTLMIFDEC 374
++ +++ DE
Sbjct 441 FTVDTLEILVLDEA 454
>sp|Q0V1Z7|DRS1_PHANO ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DRS1 PE=3 SV=1
Length=808
Score = 76.7 bits (187), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/235 (17%), Positives = 89/235 (38%), Gaps = 23/235 (10%)
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQEL--ESVSRDPSNENPKLEDLCFILQEEYHLNP 626
+ G D+ + + + ++ L E + E+ +L L +I ++ Y
Sbjct 474 STVDKLIRIGMDKPVRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAYLMYICEKIYTE-- 531
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
I+F + + ++ L G + + M+ + ++AF+
Sbjct 532 --RVIIFFRQKKEAHRVRVVFA------------LCGLKASELHGNMSQEQRIQAVEAFR 577
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
SG + L+AT VA G+DI + VI YE + + + R G C L
Sbjct 578 -SGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAE 636
Query 744 NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH-EKFIRDSQEKP 797
+ K+ + +++ ++ + + EK+ ++ E +++ +E+
Sbjct 637 PDRKVVKQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEER 691
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 52/134 (39%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQI 300
+P Q + AM+GK+ + A TG GKT L+ L P+ +V F
Sbjct 307 EPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTR 366
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K ++G + + D++I TP ++++
Sbjct 367 ELAVQCFNVATKLASFTDITFALLAGGFSSREQEVMLKTRPDVVIATPGRFIDHMHNTAA 426
Query 361 PSLSIFTLMIFDEC 374
+ +++ DE
Sbjct 427 FQVEHLEILVLDEA 440
>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DHH1 PE=3 SV=1
Length=484
Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/164 (15%), Positives = 53/164 (32%), Gaps = 14/164 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 259 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMK 306
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR R
Sbjct 307 QQERNRVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG-R 364
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE 778
L + ++ + ++++ + T D++++
Sbjct 365 FGHLGLAINLINWNDRFNLYKIEQELGTEIQAIPATIDKSLYVA 408
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 50/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K + K + +
Sbjct 56 KPSPIQEESIPVALAGRDILARAKNGTGKT--AAFVIPTLEKVKSKHNKIQALIMVPTRE 113
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +G T + ++ E I++ TP +++ L +
Sbjct 114 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD-LASRKVA 172
Query 362 SLSIFTLMIFDEC 374
LS L I DE
Sbjct 173 DLSECNLFIMDEA 185
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3
SV=2
Length=947
Score = 76.7 bits (187), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 81/198 (41%), Gaps = 6/198 (3%)
Query 183 SELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK 242
L+I K I + E++ + ++++ ++ P+ S S++ DT F+
Sbjct 247 KNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFE 306
Query 243 -PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFAN 298
P Q + M G++ I A TG GKT +L H+K P G + A
Sbjct 307 KPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAP 366
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--K 356
+ Q S K+ + G I G + + ++ +I++ TP +++ L
Sbjct 367 TRELVVQIHSDIKKFAKSLGINCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTS 426
Query 357 KGTIPSLSIFTLMIFDEC 374
G I +L T ++ DE
Sbjct 427 SGKITNLRRVTFLVMDEA 444
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/136 (15%), Positives = 45/136 (33%), Gaps = 32/136 (24%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
++FV ++ D+L + G + + G ++ L FK+
Sbjct 533 GKILVFVHSQDKCDSLLKDLFQR------------GYPCLSLHGGKDQTDRESTLADFKS 580
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGV 747
+ + LV+ Y+ + + GR G K F +T +
Sbjct 581 N-----------LE---------LVVNYDVPNHYEDYVHRVGRTGHAGRKGFAVTFISDE 620
Query 748 IEKEQINMYKEKMMND 763
E+ ++ K +++
Sbjct 621 EERYAPDLAKALELSE 636
>sp|Q7W8V6|UVRB_BORPA UvrABC system protein B OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) OX=257311
GN=uvrB PE=3 SV=1
Length=675
Score = 76.4 bits (186), Expect = 7e-13, Method: Composition-based stats.
Identities = 88/602 (15%), Positives = 196/602 (33%), Gaps = 101/602 (17%)
Query 233 SDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S +LY P+ P Q E + + + TG GKT + + +
Sbjct 12 SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGV--TGSGKT----YTMANMIARL 65
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG------------------ISGA 327
+ + A + Q + ++F R+ I
Sbjct 66 GRP----ALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKD 121
Query 328 TAENVPVEQ--------IVENND-IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 378
++ N +EQ ++E D +I+ T + G ++ ++I S
Sbjct 122 SSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAM----VLILRTGDRIS 177
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
++ ++ + + + +V G T + ++ L SL+
Sbjct 178 RREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFD 237
Query 439 IATVKHNLEELEQVVY------KPQKFFRKVESRISDKFKYIIAQLMRD-----TESLAK 487
T + + VY P++ + I ++ + +AQL+ D + L +
Sbjct 238 PLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQ 297
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE--------ESRICKALF 539
R DLE L ++ G + Y + + + D ES +
Sbjct 298 RTRFDLEMLQELG-FCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQL 356
Query 540 LYTSHLRKYNDALIISEHARMKDALD----YLKDFFSNVRAAGF-DEIEQDLTQRFEEKL 594
+ ++ R+ ALD L++F + +R F Q + +
Sbjct 357 GGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNV 416
Query 595 QE-------LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
E L + + +++DL + + L ++ T+ + + L +++
Sbjct 417 VEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQE--RVLVTTLTKRMAEDLTDFL 474
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+ ++ L ++ + + I+ + G ++L+ S+ EG+DI
Sbjct 475 SEH----GVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGISLLREGLDIP 521
Query 708 QCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ +LV + + + +IQT GR R + L + I+ + +
Sbjct 522 EVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRA 581
Query 762 ND 763
Sbjct 582 KQ 583
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 OS=Caenorhabditis
elegans OX=6239 GN=glh-4 PE=1 SV=2
Length=1156
Score = 76.7 bits (187), Expect = 7e-13, Method: Composition-based stats.
Identities = 51/371 (14%), Positives = 111/371 (30%), Gaps = 31/371 (8%)
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
G K + ++ KL + T + L V + + + ++
Sbjct 782 TGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYET 841
Query 474 IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
+ + + L + SQ+ + + ++ + + + DE R
Sbjct 842 GLKCGLAFGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADR 901
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
+ + + K + + + + +D S+ E L
Sbjct 902 MV-DSNDFGEEVSKIIGSPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGT 960
Query 594 LQELESVSRDPSNENPK---LEDLCFILQEEYHLNPET-----ITILFVKTRALVDALKN 645
E P K + L I + L P+ T++FV + D L
Sbjct 961 ANEKIDQKILPVPRTEKRDAIYKLLGIDENTVTLLPDAPIEKQKTLIFVNSVKFCDTLAA 1020
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
I G + ++ + LD F+ G + ++A++V G++
Sbjct 1021 LISS------------AGVSTISMHSYQNQEQRDRTLDDFRR-GKYQCMVASNVCARGLN 1067
Query 706 IAQCNLVILYEYV-----GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
IA + V+ Y+ + I GR G+ + V I +
Sbjct 1068 IAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTSTAFV----DVENDTDIIPCLVSI 1123
Query 761 MNDSILRLQTW 771
+N++ + W
Sbjct 1124 LNEAKKEVPEW 1134
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 74/220 (34%), Gaps = 21/220 (10%)
Query 166 NWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSEN 225
N+ ++ + F + + I D + T + E P+ +
Sbjct 690 NFLESYDFVFTPDDKMFEDAVNNDDKID----FDQKVVASTGKV-----EIPDMASFDGF 740
Query 226 SCPPSEVSDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV-----SLLICE 279
P ++ D +P Q P M G + + CA TG GKT + + E
Sbjct 741 KILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLME 800
Query 280 HHLKKFPQGQKG---KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
K + +++ A + Q + + G + G + N V+
Sbjct 801 EFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRNANVQH 860
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ +I++ T L + + G + SLS ++ DE
Sbjct 861 LRSFSQLNILVATMGRLQDFVNAGEV-SLSKMKYIVLDEA 899
>sp|O49289|RH29_ARATH Putative DEAD-box ATP-dependent RNA helicase
29 OS=Arabidopsis thaliana OX=3702 GN=RH29 PE=3 SV=1
Length=845
Score = 76.4 bits (186), Expect = 7e-13, Method: Composition-based stats.
Identities = 56/350 (16%), Positives = 117/350 (33%), Gaps = 56/350 (16%)
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+L ++ P K L ++++E + +T ++FV T+ V+ + + + L
Sbjct 245 KLSFLTVRPEE---KYSALLYLVREHISSDQQT--LIFVSTKHHVEFVNSLFK----LEN 295
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
++P + G M A+K + F+A +LI T +A GIDI + VI +
Sbjct 296 IEPSVCYG--------DMDQDARKIHVSRFRAR-KTMLLIVTDIAARGIDIPLLDNVINW 346
Query 716 EYVGNVIKMIQTRGRGRA--RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR---LQT 770
++ + GR R + + + ++++ K + + L+
Sbjct 347 DFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKN 406
Query 771 WDEAV-----------------FREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKC 813
+E + ++ I I + + DS + + K
Sbjct 407 MEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREMIDSSAELDSLERTSTKAFRLYSK 466
Query 814 KALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQF---SSFEKRAKIFCARQNCS 870
+ +R ++ L F+ + F +F + I
Sbjct 467 TKPSPSKESIRRAKDLPREGLHPIFRSIIETGELEAMSFFQKIKNFRPKQTIL------- 519
Query 871 HDWGIHVKYKTFEIP------VIKIESFVVEDIATGVQTLYSKWKDFHFE 914
G K K + P V+K + + E+I K + H E
Sbjct 520 EAEGEVAKSKHVKGPAGQWVDVMKKKRAIHEEIINTRHQQNQKTSNNHLE 569
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 63/406 (16%), Positives = 136/406 (33%), Gaps = 32/406 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + + A TG GKT L+ LK+ + + + + EQ +
Sbjct 63 LSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELG 122
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ RV+ + G + E++ + D+II TP L++ L + +L ++FDE
Sbjct 123 KFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEA 182
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
+ M L Q L S ++ +A++ A+ L L
Sbjct 183 -----DSLFGMGFAEQLHQILTQLSENRQTLL-FSATLPSALAEFAKAGLREPQ--LVRL 234
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE 494
D + L L +P++ + + + + L+ + L
Sbjct 235 DVENKISPDLKLSFL---TVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLF 291
Query 495 NLSQIQNR-EFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALI 553
L I+ +G + + V + + I + + ++ +
Sbjct 292 KLENIEPSVCYGD------MDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVIN 345
Query 554 ISEHARMKDALDYLKDFFSNVRA--AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
R K + + R A +D+ + L + V P+ E+ L
Sbjct 346 WDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPT-EDEVL 404
Query 612 EDLCFILQE-----------EYHLNPETITILFVKTRALVDALKNW 646
+++ ++ + +TI ++F +TR ++D+
Sbjct 405 KNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREMIDSSAEL 450
>sp|O13792|SUB2_SCHPO ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=uap56
PE=1 SV=3
Length=434
Score = 75.2 bits (183), Expect = 8e-13, Method: Composition-based stats.
Identities = 56/361 (16%), Positives = 114/361 (32%), Gaps = 44/361 (12%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
+ +C + L V+ K + + V + V+ +S +L
Sbjct 75 SEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQ 134
Query 482 TESLAKRICKDLENLS----------QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
++ R K L ++ + F + IV + + +K +
Sbjct 135 IKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILK 194
Query 532 SRICK-----------ALFLYTSHLRKYNDALIISEHARMKDAL--DYLKDFFSNVRAAG 578
K +++ A + M A + ++
Sbjct 195 VNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNP 254
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
+ D T+ LQ+ V + +N K+ DL L ++FVK+ +
Sbjct 255 LEIYVDDETKLTLHGLQQ-HYVKLEEKAKNRKINDLLDSL-------EFNQVVIFVKSVS 306
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ L + + G+ + AFK D I +AT
Sbjct 307 RANELDRLLRE--------CNF----PSICIHGGLPQEERIKRYKAFK-DFDKRICVATD 353
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKE 758
V GIDI + N+VI Y+ + + GR G+K +T ++ + + ++ +E
Sbjct 354 VFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQE 413
Query 759 K 759
+
Sbjct 414 R 414
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 53/137 (39%), Gaps = 7/137 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L ++ P + V+ +
Sbjct 73 HPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE--PVDGEVSVLVLCHTRE 130
Query 302 VYEQ---QKSVFSKYF-ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q + + FSKY + G + + ++ I++ TP L N L +
Sbjct 131 LAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRL-NALVR 189
Query 358 GTIPSLSIFTLMIFDEC 374
I ++ + DEC
Sbjct 190 EKILKVNSVKHFVLDEC 206
>sp|A1CNK1|ROK1_ASPCL ATP-dependent RNA helicase rok1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=rok1 PE=3 SV=1
Length=738
Score = 76.4 bits (186), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/260 (15%), Positives = 88/260 (34%), Gaps = 19/260 (7%)
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
LS Q + T + IV + +A ++ +D+ I +A ++ + +
Sbjct 374 LSTNQTKPMATLPLVRNIV-LDEADVLLDPLFRDQTLNIWRACTHPELRASLWSATMGSN 432
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
K + K+ + ++ + L ++ + E KL L
Sbjct 433 VEDLAKSTIKERKEAVNQTKSYPLLRLVVGLKDSAIPNIEH---KLIYAATEQGKLLGLR 489
Query 616 FILQEEYHLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-N 670
+L + ++F +T AL + +L + P G + +
Sbjct 490 QLLHPTAASASDVRLRPPFLIFTQTIPRAVAL------HSELRYDIPTEAGGSSRIAVLH 543
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQT 727
+ ++ + I+ F+ G+ IL+ T + G+D N V+ Y+ + + +
Sbjct 544 SDLSDGQRSEIMKNFR-KGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGR 602
Query 728 RGRGRARGSKCFLLTSNAGV 747
GR G + +
Sbjct 603 TGRAGREGGIAVTYYTKEDI 622
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 42/158 (27%)
Query 259 NTIICAPTGCGKTF------VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ ++ APTG GKT ++ ++ HH + Q + + A + Q + K
Sbjct 239 DLLVVAPTGSGKTLSFLIPVINKIVRHHHDQSQEQERGIFSIIVAPTKELASQIVNEGRK 298
Query 313 YFERHGYRVTGISGAT---------------------------------AENVPVEQIVE 339
G ++ + A+ + V
Sbjct 299 LVHGTGVKIALMKKGMRVVEREDEDDDGDDSSSEDGDESSESEHEERPIAKKSKGKAPVT 358
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
+DI++ TP LVN L ++ L ++ DE
Sbjct 359 KSDILVTTPLQLVNALSTNQTKPMATLPLVRNIVLDEA 396
>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DHH1 PE=3 SV=1
Length=512
Score = 75.6 bits (184), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/162 (17%), Positives = 56/162 (35%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 236 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHAKMA 283
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 284 QQARNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 341
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + + + + QT D++++
Sbjct 342 YGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDKSLY 383
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/234 (21%), Positives = 86/234 (37%), Gaps = 12/234 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K P+ K + +
Sbjct 33 KPSPIQEESIPVALVGRDILARAKNGTGKT--AAFVIPALEKINPKVSKIQCLILVPTRE 90
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ L +
Sbjct 91 LAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD-LAGKQVA 149
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
LS + I DE I F + ++L QV+ +A+ + +D
Sbjct 150 DLSECPMFIMDEA------DKLLSIEFTPVIEQLLRFHPKDRQVMLFSATFPISVKDFSD 203
Query 422 EALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 473
+ + Y L L I +EE +Q V+ F K++ S F
Sbjct 204 KNMTSPYEINLMDELTLRGITQYYAYVEE-KQKVHCLNTLFSKLQINQSIIFCN 256
>sp|Q0INC5|RH28_ORYSJ DEAD-box ATP-dependent RNA helicase 28 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os12g0481100 PE=2
SV=2
Length=802
Score = 76.4 bits (186), Expect = 9e-13, Method: Composition-based stats.
Identities = 64/385 (17%), Positives = 123/385 (32%), Gaps = 36/385 (9%)
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK----RICKDLEN 495
T +L LE+++++P K + I + + AQ+ E LA+ R C +
Sbjct 244 KTAAFSLPVLERLLFRP-KRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGG 302
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
LS + + T + + + + L + + I
Sbjct 303 LSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSAEIQ 362
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
E RM F + + + + L + E + + P+ ++ +
Sbjct 363 ELIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRL---EADPSLKRPATLTEEVVRIR 419
Query 616 F--------ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+L + I+F T+ LK L+G
Sbjct 420 RAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFG------------LSGMKAA 467
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ +T + L+ FK + + LIAT VA GIDI VI + + +
Sbjct 468 ELHGNLTQAQRLEALELFKKQ-EVDFLIATDVAARGIDIVGVRTVINFSCPRDARTYLHR 526
Query 728 RGR-GRA-RGSKCFLLTSNAG-----VIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
GR RA R ++ I K+ + K +++ + + ++I
Sbjct 527 VGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLKSRIVAEKPVAECAKLIEELEDQI 586
Query 781 LHIQTHEKFIRDSQEKPKPVPDKEN 805
I E+ R ++ EN
Sbjct 587 STIIQEEREERILRKAEMEATKAEN 611
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/122 (23%), Positives = 48/122 (39%), Gaps = 1/122 (1%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSK 312
A+ G++ A TG GKT L L P+ +V+ + Q S+ K
Sbjct 228 ALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEK 287
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ R I G + V + DI++ TP ++++L+ L ++I D
Sbjct 288 LAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAILILD 347
Query 373 EC 374
E
Sbjct 348 EA 349
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2
SV=2
Length=540
Score = 75.6 bits (184), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/193 (17%), Positives = 62/193 (32%), Gaps = 20/193 (10%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
L D + + + + R ++ E KL L E +
Sbjct 329 LPDSIETLARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQSFAESLNPP- 387
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++FV+++ L + ++ ++ + + ++ +D +
Sbjct 388 ---VLIFVQSKERAKELYKELA----FDDVRADVI--------HADLDEEQRQDAVDNLR 432
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTS 743
A G +LIAT V G+D N VI Y++ + I I GR G T
Sbjct 433 A-GKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTE 491
Query 744 NAGVIEKEQINMY 756
+ N+
Sbjct 492 EDKPFLRNIANVL 504
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 56/133 (42%), Gaps = 6/133 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQI 300
+P Q + + G+ CAPTG GKT L +K P ++G K V
Sbjct 168 EPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIK--PGSKEGVKAVILCPTR 225
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q K + + + ++ +++ + + + DI+I TP L + ++K +
Sbjct 226 ELAAQTTRECKKLAKGRKFYIKLMTKDLSKSGNFKDM--HCDILISTPLRLDHAVQKRDL 283
Query 361 PSLSIFTLMIFDE 373
LS ++ DE
Sbjct 284 D-LSRVEYLVLDE 295
>sp|Q75BS4|DHH1_EREGS ATP-dependent RNA helicase DHH1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DHH1 PE=3 SV=1
Length=484
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/195 (15%), Positives = 62/195 (32%), Gaps = 18/195 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 254 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMK 301
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 302 QQERNKVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 360
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREKILHIQTHEKFIRD 792
G L + + ++ N+YK E+ + I + D++++ + +
Sbjct 361 G---HLGLAINLINWNDRFNLYKIEQELGTEIAAIPAQIDKSLYVAEDTSAVPVPFPLDT 417
Query 793 SQEKPKPVPDKENKK 807
Q + + +
Sbjct 418 MQGNARAAQQMPHPQ 432
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/133 (19%), Positives = 50/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ ++ + A G GKT + + P+ K + +
Sbjct 51 RPSPIQEEAIPIALARRDILARAKNGTGKT--AAFVIPTLEIVKPKVNKIQALIMVPTRE 108
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +G T + ++ E +++ TP +++ L +
Sbjct 109 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLD-LASRKVA 167
Query 362 SLSIFTLMIFDEC 374
LS +L + DE
Sbjct 168 DLSECSLFVMDEA 180
>sp|Q7RYZ7|DBP8_NEUCR ATP-dependent RNA helicase dbp-8 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-8 PE=3 SV=1
Length=626
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 17/177 (10%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
N + I+F + D L + + T+ ++ + + L
Sbjct 447 QNVDKSVIIFCNRTSTADFLHHLLRLLDHRV------------TSLHSKLPQSQRIDNLG 494
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLL 741
F+AS IL+AT VA G+DI + +VI Y+ + I GR RA R
Sbjct 495 RFRAS-AARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTF 553
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFRE--KILHIQTHEKFIRDSQEK 796
V I + M + V R+ K++ + E + ++K
Sbjct 554 VGQRDVDLVLAIEQRVGRQMEAWTEEGVNLETRVIRDALKVVGEKKREALLEIEEQK 610
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/231 (16%), Positives = 73/231 (32%), Gaps = 21/231 (9%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG++ I + TG GKT + P G V + Q
Sbjct 228 EILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFG--VILTPTRELALQIMEQVIA 285
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG---TIPSLSIFTLM 369
+ H + I+G + + ++I TP L ++++ TI L +
Sbjct 286 LSQPHVLKAVLITGGADMRKQAIDLAKRPHLVIATPGRLADHIRTSGEDTICGLRRVKFI 345
Query 370 IFDECHN--TSKQH----PYNMIMFNYLD-----QKLGGSSGPLPQVIGLTASVGVGDAK 418
+ DE + H P F+ L Q L ++ P+V L+ +
Sbjct 346 VLDEADRLLANSGHGSMLPDVEECFSVLPPPSERQTLLFTATMTPEVKALSERPPIPGRA 405
Query 419 N--TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
E + A+L + + E ++ + V+ +
Sbjct 406 PVFVCEVDTQRLAIPATLRQMHLQVPVTHREH---YLHMFLLTPQNVDKSV 453
>sp|Q8SQK9|DHH1_ENCCU ATP-dependent RNA helicase DHH1 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=DHH1 PE=3 SV=2
Length=487
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/150 (17%), Positives = 48/150 (32%), Gaps = 16/150 (11%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
++F + V+ L I P ++ M + + F
Sbjct 344 NQCVIFCNSIKTVELLAMKITEMGL-----PSYFI-------HSKMAQEDRNIVFHNF-L 390
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA---RGSKCFLLTSN 744
G IL+AT + G+D N VI ++ + + GR G L+T+
Sbjct 391 KGKCKILVATDLITRGVDAPNTNYVINFDISKSPESYLHRIGRAGRFGAPGVAISLVTTE 450
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +++ S L E+
Sbjct 451 EKEMLMDIEAKLGKEISPLSDKGLSRLHES 480
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 50/120 (42%), Gaps = 3/120 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GKN ++ + G GKT ++ + + +G + + Q +
Sbjct 141 LGGKNLLVRSKNGTGKTASYIVPMLNMINSSELSIQG--IILVPIRELALQISRNVKRMS 198
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
E G + G T+ + ++ +++ TP +V+ L + + +LS +++FDE
Sbjct 199 EGTGVISAPVVGGTSMQDDIIRVSNGVHVMVGTPGRIVD-LVEKRVGTLSKRVILVFDEA 257
>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DHH1
PE=1 SV=1
Length=506
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (35%), Gaps = 18/167 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 271 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMK 318
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 319 QQERNKVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 377
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREK 779
G L + + ++ N+YK E+ + I + T D++++ +
Sbjct 378 G---HLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAE 421
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K P+ K + +
Sbjct 68 KPSPIQEEAIPVAITGRDILARAKNGTGKT--AAFVIPTLEKVKPKLNKIQALIMVPTRE 125
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +G T + ++ E I++ TP +++ L +
Sbjct 126 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD-LASRKVA 184
Query 362 SLSIFTLMIFDEC 374
LS +L I DE
Sbjct 185 DLSDCSLFIMDEA 197
>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DHH1 PE=3 SV=1
Length=506
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (35%), Gaps = 18/167 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 271 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMK 318
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 319 QQERNKVFHEFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 377
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREK 779
G L + + ++ N+YK E+ + I + T D++++ +
Sbjct 378 G---HLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAE 421
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K P+ K + +
Sbjct 68 KPSPIQEEAIPVAITGRDILARAKNGTGKT--AAFVIPTLEKVKPKLNKIQALIMVPTRE 125
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G +G T + ++ E I++ TP +++ L +
Sbjct 126 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLD-LASRKVA 184
Query 362 SLSIFTLMIFDEC 374
LS +L I DE
Sbjct 185 DLSDCSLFIMDEA 197
>sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65
/ FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp10
PE=3 SV=1
Length=934
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 49/126 (39%), Gaps = 15/126 (12%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ TI+F T+ VD L + + G + + A+K +
Sbjct 370 ESPTKHSTIVFAATKHHVDYLYSLLSE------------AGFAVSYVYGSLDQTARKIQV 417
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFL 740
F+ +G NIL+ T VA GIDI VI Y++ I GR RA R +
Sbjct 418 QNFR-TGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYS 476
Query 741 LTSNAG 746
L +A
Sbjct 477 LVRDAD 482
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 44/120 (37%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 125 MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG 184
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 185 RGTDLKSVLLVGGDSLEEQFAMMAGNPDIVIATPGRFLH-LKVEMNLDLSSIRYVVFDEA 243
>sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-10 PE=3 SV=3
Length=569
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/162 (17%), Positives = 56/162 (35%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 270 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHAKMA 317
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 318 QQARNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 375
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + + + + QT D++++
Sbjct 376 YGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPQTIDKSLY 417
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K P+ K + +
Sbjct 67 KPSPIQEEAIPVALTGRDILARAKNGTGKT--AAFVIPALNKINPKVSKIQCLILVPTRE 124
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ L +
Sbjct 125 LAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIVRLQDPVHIVVGTPGRILD-LAGKQVA 183
Query 362 SLSIFTLMIFDEC 374
LS + I DE
Sbjct 184 DLSECPMFIMDEA 196
>sp|Q9DF35|DD21A_XENLA Nucleolar RNA helicase 2-A OS=Xenopus laevis
OX=8355 GN=ddx21-a PE=2 SV=2
Length=759
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 13/112 (12%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
TI+F ++ L G L + + + + ++ +L
Sbjct 428 SGSHGKTIIFCDSKLEAHTLAT-----------SCGSLK-QSAKSLHGDLQQKEREVVLK 475
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
F+ G +LIAT+VA G+DI + +LV+LY + GR G
Sbjct 476 GFR-QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAG 526
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPV 302
Q + A GK+ ++ A TG GKTF + L + Q G+ +V+ +
Sbjct 206 QSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTREL 265
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + ++ +V+ G T V I + D ++ TP + +L +
Sbjct 266 AIQITNEIRSITKK--LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRV-RDLVQNYRLD 322
Query 363 LSIFTLMIFDEC 374
L+ ++ DE
Sbjct 323 LTTLKHVVLDEV 334
>sp|A8MB76|HELS_CALMQ ATP-dependent DNA helicase Hel308 OS=Caldivirga
maquilingensis (strain ATCC 700844 / DSM 13496 / JCM
10307 / IC-167) OX=397948 GN=hel308 PE=3 SV=1
Length=756
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 17/171 (10%)
Query 247 QLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + G+N ++ + T GKT ++ + +++ K + + +
Sbjct 29 QEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNV----LVNDKKSLVAVPLKALAFE 84
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ + F+ Y E G RV +G ++ + + D+II T + L + L+ + I
Sbjct 85 KLNDFNTYSEL-GIRVAASTGDYNSE---DKWLGSYDVIITTYEKLDSLLR---LKPSWI 137
Query 366 FTL--MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
+ + +I DE H + + + KL + PQ+IGL+A++G
Sbjct 138 WNVGQLIIDEIHFINDDE--RGPIIESIVAKLRMLNLN-PQIIGLSATIGN 185
>sp|Q39189|RH7_ARATH DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis
thaliana OX=3702 GN=RH7 PE=1 SV=2
Length=671
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/132 (22%), Positives = 50/132 (38%), Gaps = 18/132 (14%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
+ TI+F +T+ V L ++ G + + ++ L
Sbjct 347 YSSGGQTIIFAETKVQVSELSGLLD----------------GSRALHGEIPQSQREVTLA 390
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
F+ +G L+AT+VA G+DI L+I E V I GR GRA + +
Sbjct 391 GFR-NGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTL 449
Query 743 SNAGVIEKEQIN 754
++ +I
Sbjct 450 YDSRKSSVSRIE 461
Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/168 (20%), Positives = 58/168 (35%), Gaps = 11/168 (7%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVS 274
++P + S P E N P Q + G + + A TG GKT
Sbjct 93 DNPNAVSKFRISAPLREKLKANGIEALFP--IQASTFDMVLDGADLVGRARTGQGKTLAF 150
Query 275 LLICEHHLKKFPQGQKGK--------VVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
+L L P K K V+ + +Q + F Y G + G
Sbjct 151 VLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYG 210
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ V ++ DI++ TP + +++++ + S + DE
Sbjct 211 GDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLD-FSYLQFRVLDEA 257
>sp|Q6C7X8|DBP10_YARLI ATP-dependent RNA helicase DBP10 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP10
PE=3 SV=1
Length=926
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/249 (19%), Positives = 81/249 (33%), Gaps = 34/249 (14%)
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ F + R A I+ E +M A + D+ E+D
Sbjct 316 HLEMTFFAVKENQRDACLAFILKEVIQMPFATPEQLKELERLDERAIDDGERD------- 368
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
D + PK + L + L E TI+F T+ V+ + ++
Sbjct 369 ---------EDRKQKRPKFKKER--LPPAHQLPSEKSTIVFCPTKHHVEYVIVLLQT--- 414
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
G + + A+K L F+ +G +IL+ T VA GID+ V
Sbjct 415 ---------LGYAVSYIYGTLDQHARKNQLYRFR-TGKTSILVVTDVAARGIDVPVLANV 464
Query 713 ILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
I Y + I G R RG ++ N + K++ + + Q
Sbjct 465 INYSLPPSPKVFIHRVGRTARAGNRGWAYSIIKDNDIPYLLDLEVFLGRKLLTPRLFKQQ 524
Query 770 TWDEAVFRE 778
D + +
Sbjct 525 NPDPSAEPD 533
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (41%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GK+ + A TG GKT +L LK + V + + Q V +
Sbjct 137 LEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFS 196
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R+ + G + + ++ N DIII TP ++ LK SL+ + FDE
Sbjct 197 AGTDLRLAMLVGGDSLEEQFKMMMSNPDIIIATPGRFLH-LKVEMELSLASVEYICFDEA 255
>sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp10
PE=3 SV=1
Length=929
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 15/141 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ TI+F T+ VD L + + G + + A+K +
Sbjct 368 ESPTKYSTIVFAATKHHVDYLYSLLRE------------AGFAVSYAYGSLDQTARKIQV 415
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFL 740
F+A G NIL+ T VA GIDI VI Y++ + GR RA R +
Sbjct 416 QNFRA-GLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYS 474
Query 741 LTSNAGVIEKEQINMYKEKMM 761
L +A + ++ + +
Sbjct 475 LVRDADAPYMLDLQLFLGRRL 495
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M G++ + A TG GKT ++ LK + + + + Q V +
Sbjct 124 MDGQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELG 183
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 184 KGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLH-LKVEMNLDLSSIRYVVFDEA 242
>sp|Q06683|IRC3_YEAST Putative ATP-dependent helicase IRC3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=IRC3 PE=1 SV=1
Length=689
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/191 (20%), Positives = 75/191 (39%), Gaps = 23/191 (12%)
Query 244 RNYQLELALP-----AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFF 296
R+YQ + K + TG GKT + + + + + ++G K +
Sbjct 34 RDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLIL 93
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
++ + Q + K F + E + +E++D+I+ + Q L+ L
Sbjct 94 VHRRELALQATATLKKIFPDLKVHI--------EMGKYDCDIEDSDVIVASVQTLIRRLH 145
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
K + L+I DE H++ Y I+ ++ K + +P VIG +A+ D
Sbjct 146 K---YDTNSVNLIIIDEAHHSVAN-SYRSILDHF---KASTAETKIP-VIGFSATFERAD 197
Query 417 AKNTDEALDYI 427
+ +D I
Sbjct 198 KRALSMVMDKI 208
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 40/103 (39%), Gaps = 13/103 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
T+LF +A V +L + N G + + I+ FK +
Sbjct 280 STLLFGVDKAHVQSLHKLFKDN------------GINTDYVTSDTKQIERDNIIQKFK-N 326
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
G+ +L+ + EG D+ + ++L + +IQ GRG
Sbjct 327 GETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRG 369
>sp|Q6FQU5|DHH1_CANGA ATP-dependent RNA helicase DHH1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DHH1 PE=3 SV=1
Length=507
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (35%), Gaps = 18/167 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 256 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITD------------LGYSCYYSHARMK 303
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 304 QQDRNKVFHDFR-QGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 362
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREK 779
G L + + ++ N+YK E+ + I + T D++++ +
Sbjct 363 G---HLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAE 406
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + K P+ K + +
Sbjct 53 KPSPIQEEAIPVAITGRDILARAKNGTGKT--AAFVIPTLEKIKPKLNKIQALIMVPTRE 110
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V G +G T + ++ E +++ TP +++ L +
Sbjct 111 LALQTSQVIRTLGRHCGVSCMVTTGGTNLRDDILRLNETVHVLVGTPGRVLD-LASRKVA 169
Query 362 SLSIFTLMIFDEC 374
LS +L + DE
Sbjct 170 DLSECSLFVMDEA 182
>sp|Q07886|DDX49_DROME Probable ATP-dependent RNA helicase Dbp45A
OS=Drosophila melanogaster OX=7227 GN=Dbp45A PE=2 SV=2
Length=521
Score = 75.2 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 42/121 (35%), Gaps = 14/121 (12%)
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
L L++ N ++F T+ L ++ + G M
Sbjct 238 LIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGF------------M 285
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
+ L FK++ LIAT VA G+DI LV+ + + I GR R
Sbjct 286 RQKERVAALSRFKSN-QIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTAR 344
Query 733 A 733
A
Sbjct 345 A 345
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + + G++ I A TG GKTF L L + P + + Q
Sbjct 34 QQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPV--SHFALVLTPTHELAYQI 91
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
F + G RV +SG T + V +++++ I++ P L ++L S
Sbjct 92 SEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPGRLADHLTGCDTFSFDNL 151
Query 367 TLMIFDEC 374
++ DE
Sbjct 152 KYLVVDEA 159
>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6
OS=Mus musculus OX=10090 GN=Ddx6 PE=1 SV=1
Length=483
Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 322 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 369
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 370 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 428
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G L+T + ++ + +E++ + D++++ +
Sbjct 429 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474
Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 47/264 (18%), Positives = 98/264 (37%), Gaps = 17/264 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + + +
Sbjct 118 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--KKDNIQAMVIVPTRE 175
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 234
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 235 AKVDHVQMIVLDEADKLLSQD-FVQIMEDII-----LTLPKNRQILLYSATFPLSVQKFM 288
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ L Y L L + + E Q V+ F +++ S F
Sbjct 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNS---- 343
Query 479 MRDTESLAKRICKDLENLSQIQNR 502
+ E LAK+I + + I +
Sbjct 344 SQRVELLAKKISQLGYSCFYIHAK 367
>sp|Q6BJX6|DHH1_DEBHA ATP-dependent RNA helicase DHH1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DHH1 PE=3 SV=2
Length=516
Score = 74.8 bits (182), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/167 (18%), Positives = 60/167 (36%), Gaps = 18/167 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 255 LHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITE------------LGYSCYYSHAKMP 302
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ G +L+ + + GIDI N+VI +++ + GR
Sbjct 303 QHARNKVFHEFR-QGKVRVLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 361
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVFREK 779
G L + + ++ N+YK E+ + I + T D++++ +
Sbjct 362 G---HLGLAINLMSWNDRYNLYKIEQELGTEIKPIPATIDKSLYVAE 405
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 53/133 (40%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 52 KPSPVQEESIPMALAGRDILARAKNGTGKT--ASFVIPCLQQARPKVNKIQALILVPTRE 109
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G + +G T+ + ++ + +++ TP +++ L +
Sbjct 110 LALQTSQVVRTLGKHLGLQCMVTTGGTSLRDDILRLNDPVHVLVGTPGRVLD-LASRKVA 168
Query 362 SLSIFTLMIFDEC 374
LS L + DE
Sbjct 169 DLSECPLFVMDEA 181
>sp|Q9DF36|DD21B_XENLA Nucleolar RNA helicase 2-B OS=Xenopus laevis
OX=8355 GN=ddx21-b PE=2 SV=2
Length=800
Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 42/112 (38%), Gaps = 13/112 (12%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
TI+F ++ L G L + + + ++ +L
Sbjct 470 SGSHGKTIIFCDSKLQAHELST-----------NCGSLK-QSAKPLHGDLQQKEREVVLK 517
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
F+ G +LIAT+VA G+DI + +LV+LY + GR G
Sbjct 518 GFR-QGTFEVLIATNVAARGLDIPEVDLVVLYSAPKEADAYVHRSGRTGRAG 568
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 7/122 (6%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQQKSVFSK 312
GK+ ++ A TG GKTF + L + Q G+ +V+ + Q +
Sbjct 258 GKDVVVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRS 317
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
++ +V G T V I + D ++ TP + +L + L+ ++ D
Sbjct 318 MTKK--LKVACFYGGTPYQQQVFAIKDGIDFLVGTPGRI-RDLVQNYRLDLTALKHVVLD 374
Query 373 EC 374
E
Sbjct 375 EV 376
>sp|P25808|SPB4_YEAST ATP-dependent rRNA helicase SPB4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=SPB4 PE=1 SV=1
Length=606
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 69/393 (18%), Positives = 129/393 (33%), Gaps = 32/393 (8%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNL-EELEQVVYKPQKFFRKVES 465
G TA+ + + + K + S+I L ++E VV + +
Sbjct 56 GKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYP---- 111
Query 466 RISDKFKYIIAQLMRDTESLAKR-ICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVF 523
SD F L+ E+ + + L N QI G + Q AC
Sbjct 112 --SDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSAC--- 166
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M DE R+ F+ + K L + A ++ S++ G
Sbjct 167 SMVVMDEADRLLDMSFIKDTE--KILRLLPKQRRTGLFSAT--MRSAGSDIFKTGLRNPV 222
Query 584 QDLTQRFEEKLQELES--VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ + L+ +P+ KL+ L IL I++ T V
Sbjct 223 RITVNSKNQAPSSLKLNYCVVNPAE---KLQLLVSILNNYKFK----KCIVYFPTCVSVS 275
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++I+ K + L + + + + A+ L AF S +++L T VA
Sbjct 276 YFYSFIQYLGKRNILVNEVEI----FSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAA 331
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSNAGVIEKEQINMYKEK 759
GIDI +LVI + N + GR K + + K
Sbjct 332 RGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNV 391
Query 760 MMNDSILRLQTWDEAVFRE-KILHIQTHEKFIR 791
+ + L ++ + + + ++ ++F +
Sbjct 392 ELEELDLEVKGITTNFYEDFRNWILEDRDRFDK 424
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 45/123 (37%), Gaps = 15/123 (12%)
Query 266 TGCGKTF---VSLL--ICEHHLKKFPQGQKGK-VVFFANQIPVYEQQKSVFSKYF----- 314
TG GKT + +L + + + + A + Q +SV +
Sbjct 53 TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS 112
Query 315 ERHGYRVTGISGATAENVPVE--QIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ + + G V + + N I+I TP +++ L+ + S ++++
Sbjct 113 DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAV-KTSACSMVVM 171
Query 372 DEC 374
DE
Sbjct 172 DEA 174
>sp|A7A237|SPB4_YEAS7 ATP-dependent rRNA helicase SPB4 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=SPB4 PE=3
SV=1
Length=606
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 69/393 (18%), Positives = 129/393 (33%), Gaps = 32/393 (8%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNL-EELEQVVYKPQKFFRKVES 465
G TA+ + + + K + S+I L ++E VV + +
Sbjct 56 GKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYP---- 111
Query 466 RISDKFKYIIAQLMRDTESLAKR-ICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVF 523
SD F L+ E+ + + L N QI G + Q AC
Sbjct 112 --SDLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSAC--- 166
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M DE R+ F+ + K L + A ++ S++ G
Sbjct 167 SMVVMDEADRLLDMSFIKDTE--KILRLLPKQRRTGLFSAT--MRSAGSDIFKTGLRNPV 222
Query 584 QDLTQRFEEKLQELES--VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ + L+ +P+ KL+ L IL I++ T V
Sbjct 223 RITVNSKNQAPSSLKLNYCVVNPAE---KLQLLVSILNNYKFK----KCIVYFPTCVSVS 275
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
++I+ K + L + + + + A+ L AF S +++L T VA
Sbjct 276 YFYSFIQYLGKRNILVNEVEI----FSLHGKLQTSARTKTLTAFTDSLSNSVLFTTDVAA 331
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSNAGVIEKEQINMYKEK 759
GIDI +LVI + N + GR K + + K
Sbjct 332 RGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAITFLNEGREEDFIPFMQVKNV 391
Query 760 MMNDSILRLQTWDEAVFRE-KILHIQTHEKFIR 791
+ + L ++ + + + ++ ++F +
Sbjct 392 ELEELDLEVKGITTNFYEDFRNWILEDRDRFDK 424
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 45/123 (37%), Gaps = 15/123 (12%)
Query 266 TGCGKTF---VSLL--ICEHHLKKFPQGQKGK-VVFFANQIPVYEQQKSVFSKYF----- 314
TG GKT + +L + + + + A + Q +SV +
Sbjct 53 TGSGKTAAFVIPVLEKVVKEEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPS 112
Query 315 ERHGYRVTGISGATAENVPVE--QIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ + + G V + + N I+I TP +++ L+ + S ++++
Sbjct 113 DLFPIKCQLLVGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAV-KTSACSMVVM 171
Query 372 DEC 374
DE
Sbjct 172 DEA 174
>sp|A4REU9|MAK5_PYRO7 ATP-dependent RNA helicase MAK5 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=MAK5 PE=3 SV=2
Length=760
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 52/128 (41%), Gaps = 15/128 (12%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L ++P T++F + + V L ++ L + ++ M A
Sbjct 468 LYSLLLMHPTQRTLVFTNSISSVRRLTPMLQQ-LTLPVI-----------ALHSQMIQKA 515
Query 678 QKCILDAFKAS--GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
+ ++ F +S G +ILIAT VA G+DI ++VI Y + GR RA
Sbjct 516 RLRSVERFTSSKPGSASILIATDVAARGLDIRGIDVVIHYHVPRTADAYVHRSGRTARAD 575
Query 735 GSKCFLLT 742
S +L
Sbjct 576 SSGLSILI 583
Score = 53.6 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/202 (19%), Positives = 65/202 (32%), Gaps = 17/202 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQ 247
EK + +DL + +I ++ + E E+ + F KP Q
Sbjct 155 EKQTSKTDDDDLATGSFAALAEIDETDEGADVSEWEPLGLSEEIMSSIAKLKFAKPTAIQ 214
Query 248 LELALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKV----------VFF 296
+ G + + A TG GKT + I E L Q +V +
Sbjct 215 AATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVL 274
Query 297 ANQIPVYEQQKSVFSKYFERHGY--RVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ + Q V ++G + + Q +E DI++ TP L
Sbjct 275 SPTRELAHQLTDHIKNLCAGLATSPYVCSVTGGLSVHKQQRQ-LEKADIVVGTPGRLWEV 333
Query 355 LKKGT--IPSLSIFTLMIFDEC 374
L T I + ++ DE
Sbjct 334 LSSSTKLIQAFRGIKFLVVDEA 355
>sp|Q1E306|ROK1_COCIM ATP-dependent RNA helicase ROK1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=ROK1 PE=3 SV=1
Length=730
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/438 (13%), Positives = 129/438 (29%), Gaps = 56/438 (13%)
Query 408 LTA------SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
LTA S + +E L D E++ + +
Sbjct 294 LTAGTGVKVSAVRKGMRIVEERGQETRSLEEENDGDDSTASSD-----EEIHSSEGEKSK 348
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI---QNREFGTQKYEQWIVTVQK 518
+ SD L KR L ++ ++ + + + +++ +
Sbjct 349 DIPLTKSDILVCTPLVLANALSDGGKRDVAPLPSVQKLVLDEADVLLDPLFREQTLSIWR 408
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
AC Q+ + N + + + L LKD S +R
Sbjct 409 ACTHPQLRVGLWSA------------TMGSNIEELTKSTIKERQELLGLKDESSLIRLVV 456
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT----ILFV 634
+ + + + + E KL L +L + T ++F
Sbjct 457 GLK---------DTAIPNISHKLVYAATEQGKLLGLRQLLHPTSTSSSTTHLRPPFLIFT 507
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-NTGMTLPAQKCILDAFKASGDHNI 693
+T + I + +L + P G + ++ ++ + ++ F+ G+ +
Sbjct 508 QT------IARAIALHSELMYDIPAEAGGSSRIAVLHSELSDSKRSDVMAGFR-KGEIWV 560
Query 694 LIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEK 750
LI T + G+D N V+ Y+ + + + GR G + +
Sbjct 561 LITTDLLARGVDFRGINGVVNYDIPNSSASYVHRVGRTGRAGREGGVAVTFYTKEDIP-- 618
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFR---EKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+ + LR E + + + + + ++K P + K
Sbjct 619 -YVKNIANVISASENLRGTEEGERIPKWLLDALPSLSKNDKKDLKKYGVKARRPSTISDK 677
Query 808 LLCRKCKALACYTADVRV 825
+K + D R+
Sbjct 678 TTSKKTRISTKSGFDRRM 695
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/300 (16%), Positives = 98/300 (33%), Gaps = 59/300 (20%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG----KVVFFANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT ++ + + K G + A + Q + K
Sbjct 236 DLLVVAPTGSGKTLSFMIPLINKIMKHHHDNPGLKEILAIVVAPTKELVAQIVNEGRKLT 295
Query 315 ERHGYRVTGI---------------------SGATAENVPVEQI------------VENN 341
G +V+ + G + E+I + +
Sbjct 296 AGTGVKVSAVRKGMRIVEERGQETRSLEEENDGDDSTASSDEEIHSSEGEKSKDIPLTKS 355
Query 342 DIIILTPQILVNNLKKG---TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 398
DI++ TP +L N L G + L ++ DE ++ + L ++ S
Sbjct 356 DILVCTPLVLANALSDGGKRDVAPLPSVQKLVLDEA----------DVLLDPLFREQTLS 405
Query 399 ---SGPLPQV-IGL-TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVV 453
+ PQ+ +GL +A++G + T + +L D S + + L++
Sbjct 406 IWRACTHPQLRVGLWSATMGSNIEELTKSTIKERQELLGLKDESSLIRLVVGLKD----T 461
Query 454 YKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWI 513
P + V + + QL+ T + + L Q + + +
Sbjct 462 AIPNISHKLVYAATEQGKLLGLRQLLHPTSTSSSTTHLRPPFLIFTQTIARAIALHSELM 521
>sp|Q4WRH5|ROK1_ASPFU ATP-dependent RNA helicase rok1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=rok1 PE=3 SV=1
Length=739
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/193 (15%), Positives = 65/193 (34%), Gaps = 15/193 (8%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A +K+ + + + + + +E + E KL L +L
Sbjct 439 AKSTIKERKQAYDQTKSYPLLRLVVGLKDSAIPNIEHKLVYAATEQGKLLGLRQLLHPAA 498
Query 623 HLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-NTGMTLPA 677
+ ++F +T + I + +L + P G + ++ ++
Sbjct 499 ASVSDVRLRPPFLIFTQT------IPRAIALHSELRYDIPAEAGGSSRIAVLHSDLSDGQ 552
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRAR 734
+ I+ F+ G+ IL+ T + G+D N V+ Y+ + + + GR
Sbjct 553 RSEIMKNFR-KGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGRE 611
Query 735 GSKCFLLTSNAGV 747
G + +
Sbjct 612 GGIAVTYYTKEDI 624
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 38/154 (25%)
Query 259 NTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKVVF---FANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT L+ + + + + +K + +F A + Q + K
Sbjct 245 DLLVVAPTGSGKTLSFLIPVINKIVRHHHEQEKERGIFSVIVAPTKELASQIVNEGRKLV 304
Query 315 ERHGYRVTGI-----------------------SGATAEN--------VPVEQIVENNDI 343
G ++T + G+ +E + + +DI
Sbjct 305 HGTGVKITLMKKGMRVVDREDDDDENSHSEDSEEGSDSEQDEPSTTRKKKGKAPITKSDI 364
Query 344 IILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
++ TP +LVN L ++ L ++ DE
Sbjct 365 LVTTPLLLVNALSANRTKPMATLPLVRNIVLDEA 398
>sp|A1DL85|SUB2_NEOFI ATP-dependent RNA helicase sub2 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=sub2
PE=3 SV=1
Length=441
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/363 (14%), Positives = 111/363 (31%), Gaps = 45/363 (12%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + L + +K+ + + + +
Sbjct 106 LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGT 165
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
I + + + ES + L+ + + + + + V + M+ Q+
Sbjct 166 PIQKDIEVLSNK-----ESYPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQI 220
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + I +A + K + L+ + + ++Q
Sbjct 221 DMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQY 280
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ +E+ K L +L I+FVK+ + L
Sbjct 281 YIKL----------------SESEKNRKLNELLDSLEF----NQVIIFVKSTLRANELDK 320
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEG 703
+ + +F + +G Q+ + +K + N I +AT V G
Sbjct 321 LLR---ECNFPSIAVHSGVS------------QEERIKRYKEFKEFNKRICVATDVFGRG 365
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYKEKM 760
IDI + NL I Y+ + + GR G+K ++S ++I E
Sbjct 366 IDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVA 425
Query 761 MND 763
+ +
Sbjct 426 LPE 428
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P V+ +
Sbjct 80 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRE 137
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T +E ++ N + I++ TP L N
Sbjct 138 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDIE-VLSNKESYPNIVVGTPGRL-NA 193
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 194 LVREKKLSLRNVKAFVLDEC 213
>sp|Q8SQM5|IF4A_ENCCU ATP-dependent RNA helicase eIF4A OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=TIF1 PE=1 SV=1
Length=425
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 29/195 (15%)
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
D+ + + Q F + +E PKL L I +++ +I+F+ ++
Sbjct 247 DQTLKGIRQYFIDLRKEPPFRKGREDYLLPKLVTLYDIFRKQ----RLGQSIVFINSKED 302
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ +W+ + + ++ + +T ++ L+ F+ G LI++ +
Sbjct 303 ARIVYDWLIRHE----WECELI--------SAELTQAERERTLNRFR-GGTGRCLISSGL 349
Query 700 ADEGIDIAQCNLVILYEYV-----GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQIN 754
GIDI ++V + I I GR +G + V E E N
Sbjct 350 LSRGIDIQNLSVVFCLDVPSFERKSTYIHRIGRSGRYGRKGIAINI------VYEHELKN 403
Query 755 MYK-EKMMNDSILRL 768
+ E+ N +I L
Sbjct 404 LKAIERFYNTTIKEL 418
Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/131 (20%), Positives = 49/131 (37%), Gaps = 9/131 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + G++ A +G GKT V+ L + Q ++ A+ +
Sbjct 65 QKAAIQPIIDGRDIRAQAQSGTGKTGAFAVAALQICDMSQDVTQ-----ILVLASTREIA 119
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q + F G RV +SG + + + I++ TP + + + + S+
Sbjct 120 AQNAARFEDLGCFMGARVALLSGGSPIAADKVALEKKPHIVVGTPGRVEHMININEL-SM 178
Query 364 SIFTLMIFDEC 374
L + DE
Sbjct 179 DNIKLFVIDEA 189
>sp|Q914K8|Y022_SIFVH Putative helicase 22 OS=Sulfolobus islandicus
filamentous virus (isolate Iceland/Hveragerdi) OX=654908
GN=SIFV0022 PE=4 SV=1
Length=559
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/264 (21%), Positives = 93/264 (35%), Gaps = 37/264 (14%)
Query 240 PFKPRNYQLELALPAMKGKNTI----ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
F+ RNYQ+ + N I I APTG GK+ +++L LK K+V+
Sbjct 171 NFEMRNYQINSIKSWVSDVNVIGNGIIKAPTGSGKSVIAILSALEILK---NKNNAKIVY 227
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
N + +Q F+K + V+G + + I + I
Sbjct 228 AVNSTTLLKQ-FQNFAKKEDLPFVLVSGEIDEIKKGERSDFIALS----ISYYYSKKKRN 282
Query 356 KKGTIPSL-SIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
+ + L + L+I DE H+T I+ L S + +GL+A+
Sbjct 283 EHEKLKELVTNADLVIIDEAHHTP-----ANIVK-----SLLLDSPNSIR-LGLSATPIR 331
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
D K + L + + + EL + Y + + I K K
Sbjct 332 EDGKELE---------IMGLLGKI--SFTIDYTELVRNRYLVPIEYIRYIPEIPKKLKLK 380
Query 475 IAQLM--RDTESLAKRICKDLENL 496
I L +D E+ AK L +
Sbjct 381 IQDLDDNKDPENFAKYYSSLLRSF 404
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 76/212 (36%), Gaps = 45/212 (21%)
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
+R A I E + + + L + + + + + R+ ++ + + P
Sbjct 321 IRLGLSATPIREDGKELEIMGLL------GKISFTIDYTELVRNRYLVPIEYIRYIPEIP 374
Query 605 SNENPKLEDL------------CFILQEEYHLNPETI--------------TILFVKTRA 638
K++DL L + +P T ++ V+ A
Sbjct 375 KKLKLKIQDLDDNKDPENFAKYYSSLLRSFEHSPNTNKQIISKIKQLNQYPCLVIVRRIA 434
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ L + N ++ ++ L + ++A K +LI+TS
Sbjct 435 IAKKLAEIMRENGIIADW------------VSSKTKLEERMEKIEALKNE-KLQVLISTS 481
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ADEG+DI LV+L + IK+IQ GR
Sbjct 482 LADEGLDIPNLRLVVLLTQGKSRIKLIQRIGR 513
>sp|Q4JC00|HELS_SULAC ATP-dependent DNA helicase Hel308 OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929
/ NBRC 15157 / NCIMB 11770) OX=330779 GN=hel308 PE=3 SV=1
Length=705
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 66/171 (39%), Gaps = 16/171 (9%)
Query 247 QLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + + K +I PT GKT ++ L HL + GK ++ + +
Sbjct 31 QTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHL----LNKGGKAIYVTPLRALTSE 86
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ S F +E+ G++V SG + P + N DII+ T + L + + L
Sbjct 87 KYSTFKD-WEKLGFKVGVTSGDYDTDDPW---LRNFDIIVTTYEKLDSLWRHSA-EWLKD 141
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ DE H + + + + ++ L+A++G
Sbjct 142 IDYFVLDEFHYMNDGD--RGPVVEGVAVRAKRQGT----ILALSATIGNAK 186
>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6
OS=Homo sapiens OX=9606 GN=DDX6 PE=1 SV=2
Length=483
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 322 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 369
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 370 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 428
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G L+T + ++ + +E++ + D++++ +
Sbjct 429 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/375 (14%), Positives = 123/375 (33%), Gaps = 15/375 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + + +
Sbjct 118 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--KKDNIQAMVIVPTRE 175
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 234
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 235 AKVDHVQMIVLDEADKLLSQD-FVQIMEDII-----LTLPKNRQILLYSATFPLSVQKFM 288
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ L Y L L + + E Q V+ F +++ S F +Q
Sbjct 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNS-SQR 346
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ ++ + +E + + + + + + + + + + +
Sbjct 347 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV 406
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ I R L + + IE+ L + ++
Sbjct 407 INFDFPKLAETYLHRIGRSGRF-GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNID 465
Query 599 SVSRDPSNENPKLED 613
+ +ED
Sbjct 466 KSLYVAEYHSEPVED 480
>sp|Q6CXB7|HAS1_KLULA ATP-dependent RNA helicase HAS1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=HAS1 PE=3 SV=1
Length=497
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/300 (17%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ F + R
Sbjct 89 LIPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR- 147
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L I+ R+ D L K F F N++A DE ++ L FE++
Sbjct 148 -----QEADKLMKGVNIL-IATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDE 201
Query 594 LQELESVSRDPSNENP--------KLEDLCFI-------------LQEEYHLNPETITIL 632
++++ + + ++ K+EDL I ++ + +
Sbjct 202 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKDTSTADGLEQGYV 261
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQK 679
++ L ++++ N K + L+ + QK
Sbjct 262 VCESDKRFLLLFSFLKRNQKKKVI--VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 319
Query 680 CILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + + IL+ T VA G+DI + +I ++ + I GR R K
Sbjct 320 RTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGK 379
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 54/133 (41%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + GK+ + A TG GKT + + H LK P+ G +V +
Sbjct 61 QTRTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIEMLHSLKFKPRNGTGVIV-ITPTRELA 119
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + E H + G +++++ +I+I TP L+++L+ G I
Sbjct 120 LQIFGVARELMEFHSQTFGIVIGGANRRQEADKLMKGVNILIATPGRLLDHLQNTKGFIF 179
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 180 K--NLKALVIDEA 190
>sp|Q59MW2|DBP6_CANAL ATP-dependent RNA helicase DBP6 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP6
PE=3 SV=2
Length=606
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/175 (17%), Positives = 54/175 (31%), Gaps = 7/175 (4%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
N + ++F K+ L + + + I N+ + + IL
Sbjct 437 STNKLSNVLIFTKSNESSIRLTELLTSLFQKLSINLKIAFINSTNNRTS-----IRSKIL 491
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
F + NILI T + GID+A VI Y+ + + + GR RA
Sbjct 492 KQFSNQ-EVNILITTDLIARGIDVASITDVINYDLPNSSREYVHRVGRTARANQVGYAYS 550
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ E + + + + + ++ I Q K
Sbjct 551 FCFGKGENSWFKKLAHEVSRSKEVENVDLNVKELISDRDEEIYQQALHELQQQAK 605
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L + + ++ P+ Q KS +
Sbjct 219 DILVNASTGSGKTLAYSIPIIESLYRRVVPRVRVII-LVPTKPLINQVKSTLLQLSSGTN 277
Query 319 YRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ + + N + + ++ DII+ TP LV +L +I LS +I DE
Sbjct 278 LQIAALKNDVSINDEKDSLTKSVPDIIVSTPGRLVEHLLNDSIN-LSSLQYLIIDEA 333
>sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6
OS=Gallus gallus OX=9031 GN=DDX6 PE=2 SV=1
Length=483
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 322 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 369
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 370 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 428
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G L+T + ++ + +E++ + D++++ +
Sbjct 429 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474
Score = 56.3 bits (134), Expect = 8e-07, Method: Composition-based stats.
Identities = 51/378 (13%), Positives = 123/378 (33%), Gaps = 15/378 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + + +
Sbjct 118 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--KKDNIQAMVIVPTRE 175
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 234
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 235 AKVEHVQMIVLDEADKLLSQD-FVQIMEDII-----LTLPKNRQILLYSATFPLSVQKFM 288
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ L Y L L + + E Q V+ F +++ S F +Q
Sbjct 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNS-SQR 346
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ ++ + +E + + + + + + + + + + +
Sbjct 347 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV 406
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ I R L + + IE+ L + ++
Sbjct 407 INFDFPKLAETYLHRIGRSGRF-GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNID 465
Query 599 SVSRDPSNENPKLEDLCF 616
+ +ED
Sbjct 466 KSLYVAEYHSEPVEDEKQ 483
>sp|Q97VY9|HELS_SACS2 ATP-dependent DNA helicase Hel308 OS=Saccharolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM
11322 / P2) OX=273057 GN=hel308 PE=3 SV=1
Length=708
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 66/167 (40%), Gaps = 17/167 (10%)
Query 247 QLELALPAMKGKN-TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + N ++ +PTG GKT ++ + L GK ++ + +
Sbjct 28 QTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFL----LKNGGKAIYVTPLRALTNE 83
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F +E G++V SG + ++N DIII T + L ++L + L+
Sbjct 84 KYLTFKD-WESIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKL-DSLWRHRPDWLNE 138
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ DE H P + + + + ++ L+A++
Sbjct 139 ANYFVLDELHY--LNDPERGPVVESVTIRAKRRN-----LLALSATI 178
>sp|Q6BH93|HAS1_DEBHA ATP-dependent RNA helicase HAS1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=HAS1 PE=3 SV=1
Length=568
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/298 (19%), Positives = 101/298 (34%), Gaps = 42/298 (14%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + + F + R
Sbjct 159 LIPAIEMLYSLRFKPRNGTGVVVVSPTRELALQIFGVARELMAHHSQTFGIVIGGANRR- 217
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L+I+ R+ D L + F F NV+A DE ++ L FEE+
Sbjct 218 -----QEAEKLMKGVN-LLIATPGRLLDHLQNTQGFVFKNVKALVIDEADRILEIGFEEE 271
Query 594 LQELESVSRDPSNENP--------KLEDLCFI------LQEEYHLNPETITILFVKTRAL 639
++++ + + ++ K+EDL I L E T+ ++ +
Sbjct 272 MKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLYINVASESEASTVAGLEQGYV 331
Query 640 V-------DALKNWIEGNPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCI 681
V L ++++ N K + + G+ + QK
Sbjct 332 VCESDKRFLLLFSFLKRNVKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRT 391
Query 682 LDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + ILI T VA G+DI + +I ++ + I GR R K
Sbjct 392 NTFFEFCNATQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTAGK 449
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P + G++ + A TG GKT + + + L+ P+ G VV + +
Sbjct 131 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLRFKPRNGTG-VVVVSPTRELA 189
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + H + G E++++ +++I TP L+++L+ G +
Sbjct 190 LQIFGVARELMAHHSQTFGIVIGGANRRQEAEKLMKGVNLLIATPGRLLDHLQNTQGFVF 249
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 250 K--NVKALVIDEA 260
>sp|F0NDL2|HELS_SULIR ATP-dependent DNA helicase Hel308 OS=Sulfolobus
islandicus (strain REY15A) OX=930945 GN=hel308 PE=1
SV=1
Length=715
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 66/167 (40%), Gaps = 17/167 (10%)
Query 247 QLELALPAMKGKN-TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + N ++ +PTG GKT ++ + L GK ++ + +
Sbjct 35 QTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFL----LKNGGKAIYVTPLRALTNE 90
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F +E G++V SG + ++N DIII T + L ++L + L+
Sbjct 91 KYLTFKD-WESIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKL-DSLWRHRPDWLNE 145
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ DE H P + + + + ++ L+A++
Sbjct 146 ANYFVLDELHY--LNDPERGPVVESVTIRAKRRN-----LLALSATI 185
>sp|Q9VVK8|DDX52_DROME Probable ATP-dependent RNA helicase DDX52
OS=Drosophila melanogaster OX=7227 GN=ais PE=1 SV=1
Length=594
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
++FV+++ L + + G + + + + AF+ G
Sbjct 369 VLVFVQSKERAKQLFEEL------------LYDGINVDVIHAERSQHQRDNCVKAFR-EG 415
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAG 746
+LI T + GID NLVI Y++ I I GR G T
Sbjct 416 SIWVLICTELMGRGIDFKGVNLVINYDFPPTTISYIHRIGRTGRAGRPGRAITFFTQEDT 475
Query 747 VIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
+ + K LQ K+ + ++ ++ +P+ D+++K
Sbjct 476 SNLRGIALIIKNSGGTVPEYMLQMKKVRKSEAKMRAKKPLDREDISTKIRPETKGDEKHK 535
Query 807 KLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKP--KQFSSFEKRAK 861
+K T + + + L K+ + KP K+ + EK+ K
Sbjct 536 STKLKK----VERTEKILKNRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVEKKTK 588
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/135 (21%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q++ ++ + + CAPTG GKT L + L+ + + + A
Sbjct 141 HPTPIQMQALPVLLQRRALMACAPTGSGKTLAFLTPIINGLRA-HKTTGLRALVLAPTRE 199
Query 302 VYEQQKSVFSKYFERHGYRVTGISGAT-AENVPVEQIVENNDIIILTPQILVNNLKKG-T 359
+ +Q ++ G R IS + A+ + + DI++ TP + L++
Sbjct 200 LAQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRVRFLLQQEPP 259
Query 360 IPSLSIFTLMIFDEC 374
+ LS + DE
Sbjct 260 LLDLSHVEWFVLDEA 274
>sp|Q2UQW3|ROK1_ASPOR ATP-dependent RNA helicase rok1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rok1
PE=3 SV=1
Length=725
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 19/221 (9%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A +K+ + + + + + ++ + E KL L +L
Sbjct 424 AKSTIKERKDASSLTKSYPLYRLVVGLKDSAIPNIQHKLVYAATEQGKLLGLRQLLHPAA 483
Query 623 HLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ-NTGMTLPA 677
+ ++F +T AL + +L + P G + ++ ++
Sbjct 484 AAASDIRLRPPFLIFTQTIPRAVAL------HSELRYDIPPEAGGSSRIAVLHSDLSDGQ 537
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRAR 734
+ I+ F+ G+ IL+ T + GID N V+ Y+ + + + GR
Sbjct 538 RSEIMKNFR-KGEIWILVTTDLLARGIDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGRE 596
Query 735 GSKCFLLTSNAGV----IEKEQINMYKEKMMNDSILRLQTW 771
G + + I++ ++ + +Q W
Sbjct 597 GGVAVTYYTKEDIPYVKSIANVIDVSEKLRGTEGEKSVQKW 637
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 50/153 (33%), Gaps = 37/153 (24%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----VVFFANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT L+ + + + GQ+ + V A + Q + K
Sbjct 231 DLLVVAPTGSGKTLSFLIPVINKIVRHHHGQQEERGIFAVVVAPTKELASQIVNEGRKLV 290
Query 315 ERHGYRVTGISGATAENVPV------------------------------EQIVENNDII 344
G ++T + + V +DI+
Sbjct 291 SGTGVKITLMKKGMQVVEREDDDEDVLDEGSSESSESEDDEKTTEKKSKGKAPVTKSDIL 350
Query 345 ILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
+ TP LVN L ++ L ++ DE
Sbjct 351 VTTPLQLVNALSANKTKPMATLPLVRNIVLDEA 383
>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dhh1
PE=3 SV=1
Length=509
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q D+ ++
Sbjct 378 FGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|P0CQ96|SUB2_CRYNJ ATP-dependent RNA helicase SUB2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=SUB2 PE=3 SV=1
Length=442
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L +FVK+ L ++
Sbjct 286 EEREKNRKLNDLLDNLEF----NQVCIFVKSVQRATQLDALLQE--------CNF----P 329
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
++G+ + FKA + IL+AT + GID+ + N+VI Y+ + +
Sbjct 330 SICIHSGLQQAERISRFQQFKAF-EKRILVATDIFGRGIDVERVNVVINYDAPSDADSYL 388
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 389 HRVGRAGRFGTKGLAISFVSSDADQEVLQRIQER 422
Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats.
Identities = 59/383 (15%), Positives = 129/383 (34%), Gaps = 42/383 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V +L ++ P + ++ +
Sbjct 81 HPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIE--PVDGEVSIIILCHTRE 138
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLKK 357
+ Q K+ F+++ + TG+ ++I+ N + I++ TP + L +
Sbjct 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM-ALVR 197
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ S + DEC M LD + + + A+
Sbjct 198 DKKLNASKVKHFVLDECDK----------MLEQLD--MRRDVQEIFR-----ATPHHKQV 240
Query 418 KNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
L I C S + + +L ++ Q+F+ K+E R ++ +
Sbjct 241 MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLT--LHGLQQFYLKLEEREKNRKLNDLL 298
Query 477 QLMRDTES--LAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + K + + + + +Q F + + ++ Q ++ +
Sbjct 299 DNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILV 358
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG--------FDEIEQDL 586
+F + + N ++ + DA YL R + +Q++
Sbjct 359 ATDIFGRGIDVERVN---VVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEV 415
Query 587 TQRFEEKLQELESVSRDPSNENP 609
QR +E+ P +P
Sbjct 416 LQRIQERFTVAIPTL--PETVDP 436
>sp|P0CQ97|SUB2_CRYNB ATP-dependent RNA helicase SUB2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=SUB2 PE=3 SV=1
Length=442
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L +FVK+ L ++
Sbjct 286 EEREKNRKLNDLLDNLEF----NQVCIFVKSVQRATQLDALLQE--------CNF----P 329
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
++G+ + FKA + IL+AT + GID+ + N+VI Y+ + +
Sbjct 330 SICIHSGLQQAERISRFQQFKAF-EKRILVATDIFGRGIDVERVNVVINYDAPSDADSYL 388
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 389 HRVGRAGRFGTKGLAISFVSSDADQEVLQRIQER 422
Score = 46.7 bits (109), Expect = 7e-04, Method: Composition-based stats.
Identities = 59/383 (15%), Positives = 129/383 (34%), Gaps = 42/383 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V +L ++ P + ++ +
Sbjct 81 HPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIE--PVDGEVSIIILCHTRE 138
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLKK 357
+ Q K+ F+++ + TG+ ++I+ N + I++ TP + L +
Sbjct 139 LAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTM-ALVR 197
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ S + DEC M LD + + + A+
Sbjct 198 DKKLNASKVKHFVLDECDK----------MLEQLD--MRRDVQEIFR-----ATPHHKQV 240
Query 418 KNTDEALDY-ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
L I C S + + +L ++ Q+F+ K+E R ++ +
Sbjct 241 MMFSATLSKDIRATCKKFMQSPLEIYVDDETKLT--LHGLQQFYLKLEEREKNRKLNDLL 298
Query 477 QLMRDTES--LAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + K + + + + +Q F + + ++ Q ++ +
Sbjct 299 DNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILV 358
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG--------FDEIEQDL 586
+F + + N ++ + DA YL R + +Q++
Sbjct 359 ATDIFGRGIDVERVN---VVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEV 415
Query 587 TQRFEEKLQELESVSRDPSNENP 609
QR +E+ P +P
Sbjct 416 LQRIQERFTVAIPTL--PETVDP 436
>sp|Q8CGS6|DPOLQ_MOUSE DNA polymerase theta OS=Mus musculus OX=10090
GN=Polq PE=1 SV=2
Length=2544
Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 32/228 (14%)
Query 204 METSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY---QLE--LALPAMKGK 258
T + +D Q L N P V + Y F R Q E L ++GK
Sbjct 51 TGTGTNKRRVSDDQIDQLLLANWGLPKAVLEK--YHSFGVRKMFEWQAECLLLGHVLEGK 108
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
N + APT GKT V+ L+ K + K +F + V +++K F+ G
Sbjct 109 NLVYSAPTSAGKTLVAELLIL----KRVLETRKKALFILPFVSVAKEKKCYLQSLFQEVG 164
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQI---LVNNLKKGTIPSLSIFTLMIFDECH 375
+V G G+T+ + DI + T + LVN L + + + +++ DE H
Sbjct 165 LKVDGYMGSTSPT----GQFSSLDIAVCTIERANGLVNRLIEE--NKMDLLGMVVVDELH 218
Query 376 NTSKQH-PY------NMI--MFNYLDQKLGGSSGPLP---QVIGLTAS 411
H Y I + S+ L Q++G++A+
Sbjct 219 MLGDSHRGYLLELLLTKICYVTRKSASHQAESASTLSNAVQIVGMSAT 266
Score = 39.4 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 26/126 (21%), Positives = 44/126 (35%), Gaps = 15/126 (12%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL---Y-EYVGNVIKMI 725
+ G+T + I AF+ G +L ATS G+++ ++I + +++
Sbjct 416 HAGLTFEERDIIEGAFR-QGFIRVLAATSTLSSGVNLPARRVIIRTPIFSGQPLDILTYK 474
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
Q GR +G E I + K + I LQ E V +
Sbjct 475 QMVGRAGRKGVDTM----------GESILVCKNSEKSKGIALLQGSLEPVHSCLQRQGEV 524
Query 786 HEKFIR 791
IR
Sbjct 525 TASMIR 530
>sp|A4RBS3|SUB2_PYRO7 ATP-dependent RNA helicase SUB2 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=SUB2 PE=3 SV=1
Length=436
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/180 (19%), Positives = 65/180 (36%), Gaps = 22/180 (12%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E + + + L L+ + K L +L + I+FVK+
Sbjct 256 TEHYVDEDTKLTLHGLQQYFVALEEK-EKNRKLNELLDDLQF----NQVIIFVKSTLRAT 310
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSV 699
L + + +F + +G Q+ + +K + N I +AT V
Sbjct 311 ELDKLLR---ECNFPSIAVHSGVS------------QEERIRRYKEFKEFNKRICVATDV 355
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GIDI + NL I Y+ + + GR G+K ++ +KE + +++
Sbjct 356 FGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKR 415
Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/140 (26%), Positives = 56/140 (40%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q AM G + I A +G GKT V +L ++ P + V+ +
Sbjct 74 HPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVE--PVAGECSVLVMCHTRE 131
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T E +++N + II+ TP L N
Sbjct 132 LAFQIRNEYNRFSKYMPD--IKTGVFFGGTPIQKDAE-LLKNKETHPHIIVGTPGRL-NA 187
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + LS + + DEC
Sbjct 188 LVRDKFLRLSSVRIFVLDEC 207
>sp|Q3EBD3|RH41_ARATH DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis
thaliana OX=3702 GN=RH41 PE=2 SV=1
Length=505
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/151 (19%), Positives = 63/151 (42%), Gaps = 17/151 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K + L IL+ + H P +++V +R D L N I ++TG +
Sbjct 342 KKQKLFDILRSQNHFKPP--AVVYVSSRVGADLLANAIT-----------VVTGVKALSI 388
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + ++ ++ +F G+ +L++T V G+D+ VI+++ + + I G
Sbjct 389 HGEKPMKERRDVMGSF-LGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIG 447
Query 730 RG---RARGSKCFLLTSNAGVIEKEQINMYK 757
R +G+ + + + + + K
Sbjct 448 RASRMGEKGTAIVFVNEDDRNLFPDLVAALK 478
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/224 (21%), Positives = 80/224 (36%), Gaps = 28/224 (13%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGK 258
D+ + + S + P + PP + + P Q++ A+ GK
Sbjct 95 DIHVQGQGSAVP------PPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGK 148
Query 259 NTIICAPTGCGKTF------VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ---QKSV 309
+ + A TG GKT +S H Q + + A + Q Q +
Sbjct 149 SLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKM 208
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
K V G + + ++Q VE +II TP +V+ L K TI L
Sbjct 209 LGKGLPFKTALVVGGDPMSGQLYRIQQGVE---LIIGTPGRVVDLLSKHTI-ELDNIMTF 264
Query 370 IFDECHNTSKQHPYN-MIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ DE + Q + +M + + PQV+ +A++
Sbjct 265 VLDEV-DCMLQRGFRDQVMQIF-------QALSQPQVLLFSATI 300
>sp|Q9M2E0|RH12_ARATH DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis
thaliana OX=3702 GN=RH12 PE=2 SV=1
Length=498
Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 18/164 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 349 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKMV 396
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ + GR
Sbjct 397 QDHRNRVFHEFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 455
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVF 776
G L + V +++ MY+ E+ + I + D+A++
Sbjct 456 G---HLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAIY 496
Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G + + A G GKT + + P + +
Sbjct 146 KPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKID--PNNNVIQAMILVPTRE 203
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + +V +G T+ + ++ + +++ TP +++ KKG
Sbjct 204 LALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCV 263
Query 362 SLSIFTLMIFDEC 374
L +++ DE
Sbjct 264 -LKDCAMLVMDEA 275
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46
OS=Pongo abelii OX=9601 GN=DDX46 PE=2 SV=1
Length=1032
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (38%), Gaps = 20/140 (14%)
Query 623 HLNPETITILFVKTRALVD-ALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H I+FV + D LK+ + P +S + G+ +
Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSL--------------HGGIDQYDRDS 660
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSK 737
I++ FK +G +L+ATSVA G+D+ LV+ Y + + GR +G
Sbjct 661 IINDFK-NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
Query 738 CFLLTSNAGVIEKEQINMYK 757
+T + + I +
Sbjct 720 YTFITEDQARYAGDIIKALE 739
Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/138 (25%), Positives = 58/138 (42%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP Q + M G++ I A TG GKT LL H+ ++G+ V
Sbjct 394 KPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTP 453
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 454 TRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 514 SGRVTNLRRVTYVVLDEA 531
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46
OS=Homo sapiens OX=9606 GN=DDX46 PE=1 SV=2
Length=1031
Score = 74.8 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (38%), Gaps = 20/140 (14%)
Query 623 HLNPETITILFVKTRALVD-ALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H I+FV + D LK+ + P +S + G+ +
Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSL--------------HGGIDQYDRDS 660
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSK 737
I++ FK +G +L+ATSVA G+D+ LV+ Y + + GR +G
Sbjct 661 IINDFK-NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
Query 738 CFLLTSNAGVIEKEQINMYK 757
+T + + I +
Sbjct 720 YTFITEDQARYAGDIIKALE 739
Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/138 (25%), Positives = 58/138 (42%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP Q + M G++ I A TG GKT LL H+ ++G+ V
Sbjct 394 KPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTP 453
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 454 TRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 514 SGRVTNLRRVTYVVLDEA 531
>sp|Q750Q4|MS116_EREGS ATP-dependent RNA helicase MSS116, mitochondrial
OS=Eremothecium gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=MSS116 PE=3 SV=1
Length=658
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/207 (17%), Positives = 74/207 (36%), Gaps = 27/207 (13%)
Query 542 TSHLRKYNDALIISEHAR--MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
T+H+R + + + + +++ K F + +++ Q+ ++
Sbjct 313 TTHIRTLLVSATLDDKVQSLANSIMNHAKCLFIDTVDPNEQATNENIAQKVVISKDFADN 372
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
++ + ++EE NP+ I+F+ T V+ ++ +
Sbjct 373 ITAS-----------LYKIREEASANPKLKAIVFMPTIVAVEYWGELLQSQCR------- 414
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G + G++ + + F+A D IL+ T VA G+D++ V
Sbjct 415 ---GTPVLLFHGGLSQGRRNSTMKRFRAM-DSGILVCTDVAARGMDVSDVQHVYQVGVPT 470
Query 720 ---NVIKMIQTRGRGRARGSKCFLLTS 743
N I I GR +GS L
Sbjct 471 SPDNYIHRIGRTGRAGRKGSSTIFLAE 497
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/134 (18%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
Query 247 QLELALPAMKGKNTIIC-APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q + P ++ ++ ++ A TG GKT L+ L + P + K V A + Q
Sbjct 153 QQKTLKPILQTEHDVVARAKTGTGKTLAFLMPLFQRLLEGPPSENVKAVVIAPTRDLAAQ 212
Query 306 QKSVFSKYFERHG-----YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ ++ + V + G++ +I++ TP L++ L+
Sbjct 213 IFNEINEMRNANRKLRRFNAVVMMGGSSRTETFRSLERRRPNIVVATPGRLIDMLEACGP 272
Query 361 PSLSIFTLMIFDEC 374
+ + DE
Sbjct 273 KYFTEVDFKVLDEA 286
>sp|D0KN27|HELS_SACS9 ATP-dependent DNA helicase Hel308 OS=Saccharolobus
solfataricus (strain 98/2) OX=555311 GN=hel308 PE=1
SV=1
Length=715
Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/167 (20%), Positives = 66/167 (40%), Gaps = 17/167 (10%)
Query 247 QLELALPAMKGKN-TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q E + N ++ +PTG GKT ++ + L GK ++ + +
Sbjct 35 QTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL----LKNGGKAIYVTPLRALTNE 90
Query 306 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
+ F +E G++V SG + ++N DIII T + L ++L + L+
Sbjct 91 KYLTFKD-WELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKL-DSLWRHRPEWLNE 145
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ DE H P + + + + ++ L+A++
Sbjct 146 VNYFVLDELHY--LNDPERGPVVESVTIRAKRRN-----LLALSATI 185
>sp|Q0U6X2|MAK5_PHANO ATP-dependent RNA helicase MAK5 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=MAK5 PE=3 SV=1
Length=817
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGN--PKLSFLKPGILTGRGKTNQNTGMTL 675
L P+ ++F + + V L +++ P L ++ M
Sbjct 532 LYSLLMFYPKKRALIFTNSISAVRRLTPFLQNLALPALPL--------------HSSMAQ 577
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
A+ ++ FK +IL+AT VA G+DI + LVI Y + GR RA
Sbjct 578 KARLRSIERFKER-PGSILVATDVAARGLDIPKVELVIHYHLPRAADTYVHRSGRTARAE 636
Query 735 GSKCFLLT 742
S +L
Sbjct 637 ASGSSILI 644
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 47/144 (33%), Gaps = 12/144 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF------VSLLICEHHLKKFPQGQKGKVVF 295
KP Q M G++ I A TG GKT + + K + + +
Sbjct 271 KPTTIQASTIPEIMAGRDVIGKASTGSGKTLAFGIPIIESYLASKSKSKDVKDKTPLALI 330
Query 296 FANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
A + Q + + ++G A Q +E DII+ TP L
Sbjct 331 IAPTRELAHQITAHLTALCAKGAFEAPLIASVTGGLAVQKQRRQ-LEKADIIVGTPGRLW 389
Query 353 NNLK--KGTIPSLSIFTLMIFDEC 374
+ G + + ++ DE
Sbjct 390 EVISTGHGLLEKVKQIRFLVVDEA 413
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1
OS=Xenopus tropicalis OX=8364 GN=hfm1 PE=2 SV=1
Length=1336
Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 6/122 (5%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKK--FPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+N ++CAPTG GKT + L L + P K+V+ A + Q+ + F
Sbjct 165 DRNFVLCAPTGSGKTVIFELAIIRLLMQVPMPWTNV-KIVYMAPIKALCGQRYDDWKAKF 223
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL-SIFTLMIFDE 373
G ++G T + E +++ II+ TP+ + +K +L + L + DE
Sbjct 224 GPVGLNCKELTGDTEMDDLFE--IQHAHIIMTTPEKWDSMTRKWKDNTLVQLVRLFLIDE 281
Query 374 CH 375
H
Sbjct 282 VH 283
>sp|Q9WTM2|DDX6_CAVPO Probable ATP-dependent RNA helicase DDX6
(Fragment) OS=Cavia porcellus OX=10141 GN=DDX6 PE=2 SV=1
Length=472
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 311 VHCLNTLFPRLQTNQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 358
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 359 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRF 417
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G L+T + ++ + +E++ + D++++ +
Sbjct 418 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 463
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/375 (14%), Positives = 124/375 (33%), Gaps = 15/375 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + + +
Sbjct 107 KPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDL--KKDNIQAMVIVPTRE 164
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 165 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG-V 223
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 224 AKVDHVQMIVLDEADKLLSQD-FVQIMEDII-----LTLPKNRQILLYSATFPLSVQKFM 277
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ L Y L L + + E Q V+ F ++++ S F +Q
Sbjct 278 NSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFPRLQTNQSIIFCNS-SQR 335
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ ++ + +E + + + + + + + + + + +
Sbjct 336 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVV 395
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ I R L + + IE+ L + ++
Sbjct 396 INFDFPKLAETYLHRIGRSGRF-GHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNID 454
Query 599 SVSRDPSNENPKLED 613
+ +ED
Sbjct 455 KSLYVAEYHSEPVED 469
>sp|A5DIP0|DHH1_PICGU ATP-dependent RNA helicase DHH1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DHH1 PE=3
SV=1
Length=547
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 13/121 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + I+F + V+ L I G + M
Sbjct 254 LHCLNTLFSKLKINQAIIFCNSTNRVELLAKKITE------------LGYSCYYSHAKMP 301
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 302 QQARNKVFHEFR-QGSVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 360
Query 735 G 735
G
Sbjct 361 G 361
Score = 53.2 bits (126), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + I + + K +V+
Sbjct 51 KPSPIQEESIPMALAGRDILARAKNGTGKT--ASFIIPALQQVKTKLNKIQVLILVPTRE 108
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + +G T V ++ E I++ TP +++ L +I
Sbjct 109 LALQTSQVVKTLGKHLKLQCMVTTGGTLLRDDVMRLDEPVHILVGTPGRVLD-LAARSIA 167
Query 362 SLSIFTLMIFDEC 374
S + + DE
Sbjct 168 DFSECPMFVMDEA 180
>sp|A5DPU0|MAK5_PICGU ATP-dependent RNA helicase MAK5 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=MAK5 PE=3
SV=1
Length=754
Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/119 (22%), Positives = 46/119 (39%), Gaps = 16/119 (13%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F V L ++ N + + ++ M + L+ FKA
Sbjct 472 GSTLVFANAIDSVKRLVPFL-TNLNIPTF-----------SIHSSMIQKQRLRALERFKA 519
Query 688 SGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+G+ N +LIA+ VA G+DI + V Y + + GR RA ++
Sbjct 520 AGEKNQTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYVHRSGRTARAGKEGVSVMF 578
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/143 (19%), Positives = 57/143 (40%), Gaps = 10/143 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLL-ICEHHLKKFPQG-QKGKVVFF 296
+P Q + A++GK+ I A TG GKT + +L C L+ + + F
Sbjct 206 EPTAIQRKAIPLALQGKDVIGKATTGSGKTLAYGIPILERCLAQLESKTNTIKPPTAMIF 265
Query 297 ANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
A + Q + +K+ + I+G + + I++ TP +
Sbjct 266 APTRELAHQVVDHMNKIAKFSPLAQNGIVSITGGLSIQKQERLLSHGPSILVATPGRCLE 325
Query 354 NLKKGT--IPSLSIFTLMIFDEC 374
++K + +++ +++ DE
Sbjct 326 LMEKSVDLVNRMALTDMIVLDEA 348
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46
OS=Mus musculus OX=10090 GN=Ddx46 PE=1 SV=2
Length=1032
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (38%), Gaps = 20/140 (14%)
Query 623 HLNPETITILFVKTRALVD-ALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H I+FV + D LK+ + P +S + G+ +
Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSL--------------HGGIDQYDRDS 660
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSK 737
I++ FK +G +L+ATSVA G+D+ LV+ Y + + GR +G
Sbjct 661 IINDFK-NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
Query 738 CFLLTSNAGVIEKEQINMYK 757
+T + + I +
Sbjct 720 YTFITEDQARYAGDIIKALE 739
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/138 (25%), Positives = 58/138 (42%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP Q + M G++ I A TG GKT LL H+ ++G+ V
Sbjct 394 KPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTP 453
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 454 TRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 514 SGRVTNLRRVTYVVLDEA 531
>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dhh1
PE=3 SV=1
Length=511
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 26/194 (13%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
L + ++ + ++++ + Q D+ ++ +
Sbjct 378 FGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY------------VYESPE 425
Query 795 EKPKPVPDKENKKL 808
P+P+ + +L
Sbjct 426 TIPRPIANASQAQL 439
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis
thaliana OX=3702 GN=RH8 PE=2 SV=1
Length=505
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 18/164 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 356 IHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKML 403
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ N + GR
Sbjct 404 QDHRNRVFHDFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRF 462
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVF 776
G L + + +++ N+Y+ E+ + I ++ D+A++
Sbjct 463 G---HLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIY 503
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 64/373 (17%), Positives = 122/373 (33%), Gaps = 35/373 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ G++ + A G GKT + K + V
Sbjct 153 RPSPIQEESIPIALTGRDILARAKNGTGKT--AAFCIPVLEKIDQDNNVIQAVIIVPTRE 210
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + +V +G T+ + ++ + +++ TP +++ KKG
Sbjct 211 LALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCV 270
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAK 418
L ++++ DE + ++ + LP Q++ +A+ V
Sbjct 271 -LKDCSVLVMDEA---------DKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKD 320
Query 419 NTDEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
D L Y+ L L I +EE Q ++ F K++ S F +
Sbjct 321 FKDRFLTNPYVINLMDELTLKGITQFYAFVEE-RQKIHCLNTLFSKLQINQSIIFCNSVN 379
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ E LAK+I + + I + + + AC +C
Sbjct 380 R----VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL----------VCT 425
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
LF ++ N + K+A YL + R +T L
Sbjct 426 DLFTRGIDIQAVNVVINFDF---PKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYR 482
Query 597 LESVSRDPSNENP 609
+E + P
Sbjct 483 IEQELGTEIKQIP 495
>sp|Q84T03|RH27_ORYSJ DEAD-box ATP-dependent RNA helicase 27 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3
SV=1
Length=590
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 52/125 (42%), Gaps = 8/125 (6%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ GK+ + A TG GKT + + HH P+ G VV + Q +V
Sbjct 131 LNGKDVMGAAKTGSGKTLAFLIPAIEMLHHAHFMPRNGTG-VVVVCPTRELAIQTHNVAK 189
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
+ + H + I G +Q+ + ++++ TP L+++L+ G I +
Sbjct 190 ELMKYHSQTLGYIIGGNGRRGEADQLAKGVNLLVATPGRLLDHLQNTKGFIYR--RLKCL 247
Query 370 IFDEC 374
I DE
Sbjct 248 IIDEA 252
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query 675 LPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
QK F + IL+ T+VA G+DI + ++ Y+ I GR R
Sbjct 382 QKQQKRTTTFFNFCKAEKGILLCTNVAARGLDIPDVDFIVQYDPPDEPKDYIHRVGRTAR 441
Query 733 ARGSK 737
K
Sbjct 442 GEKGK 446
>sp|A4HVU6|JBP2_LEIIN Bifunctional helicase and thymine dioxygenase
JBP2 OS=Leishmania infantum OX=5671 GN=JBP2 PE=3 SV=2
Length=1098
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 87/543 (16%), Positives = 171/543 (31%), Gaps = 87/543 (16%)
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLIC 278
+S P T L S P QL + K ++ G GKT V+L +C
Sbjct 525 GADSSLPPLFVPTRLASHLAP--VQLAALGFIVERTEKQSGCVVAMTMGLGKTLVALTLC 582
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQI 337
L PQ ++ P+ + HG + ++ EQ
Sbjct 583 FSQLHLAPQAD---ILILTP-KPIIS-HWVDEKNKWGMHGLHFPHFVASDGLNSLEFEQQ 637
Query 338 VENND------------IIILTPQILVNNLKKGTIPSLSIFT--LMIFDECHN--TSKQH 381
+ + I ++ + L G + FT LMI DE H
Sbjct 638 LLEYERQRNNEKPKLGHIFVINGEYLA-----GFLRRFKRFTPLLMIVDEGHRVAAKGNK 692
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
+ LD+ +++ L+ + DA + ++ K + +
Sbjct 693 -----LTESLDRLRCNL-----RIV-LSGTPLQNDASELYRLVGWVNKGVSRVL------ 735
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
P K F+++ + I+ + +A+ +D +
Sbjct 736 --------------PPKRFQELANDINQFVEGDDGAFYNAV--MAQEYIQDWMRGFVFRE 779
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
E +++ + + + +K + T H + A +
Sbjct 780 MENDLPPLHDYLLICGSSDVQREYEEKLGLTETAMTALKATEHRPHHLSTHPACYLAFIS 839
Query 562 DALDYLK-----DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP-SNENPKLEDLC 615
D+ + SN ++E+ T R E+ +Q +E+ D + + K+ L
Sbjct 840 DSYQSMVSGWTVRAQSNTSRPRVSQLEEIDTMRLEQYVQLVENEQLDAFIDLSGKMRVLV 899
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
I+ I+F D + + L+ T RG+ +Q+
Sbjct 900 DIVLRVQARKE--KLIIFSLYVGSQDLIHRTLTA------LRVCTFTVRGRDSQD----- 946
Query 676 PAQKCILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
++ + F + D +L+ +T +A G+D N V+L++ N Q R R
Sbjct 947 -RRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTAANHVVLFDSWWNPQVDAQAIARAYRR 1005
Query 735 GSK 737
+
Sbjct 1006 NQR 1008
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46
OS=Rattus norvegicus OX=10116 GN=Ddx46 PE=1 SV=1
Length=1032
Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 53/140 (38%), Gaps = 20/140 (14%)
Query 623 HLNPETITILFVKTRALVD-ALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
H I+FV + D LK+ + P +S + G+ +
Sbjct 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSL--------------HGGIDQYDRDS 660
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSK 737
I++ FK +G +L+ATSVA G+D+ LV+ Y + + GR +G
Sbjct 661 IINDFK-NGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYA 719
Query 738 CFLLTSNAGVIEKEQINMYK 757
+T + + I +
Sbjct 720 YTFITEDQARYAGDIIKALE 739
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/138 (25%), Positives = 58/138 (42%), Gaps = 5/138 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFAN 298
KP Q + M G++ I A TG GKT LL H+ ++G+ V
Sbjct 394 KPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTP 453
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q K+ + G RV + G T + + ++ +II+ TP +++ L
Sbjct 454 TRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAAN 513
Query 357 KGTIPSLSIFTLMIFDEC 374
G + +L T ++ DE
Sbjct 514 SGRVTNLRRVTYVVLDEA 531
>sp|A1CMQ7|SUB2_ASPCL ATP-dependent RNA helicase sub2 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=sub2 PE=3 SV=1
Length=441
Score = 73.7 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/363 (17%), Positives = 119/363 (33%), Gaps = 48/363 (13%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
+ +C A L+ V+ K L + V V S +L
Sbjct 82 SEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQ 141
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
++ R K L + ++ F Q V V + R+ +
Sbjct 142 IKNEYARFSKYLPD---VKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDK 198
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL-ESV 600
LR A ++ E +M D +D +D RA D+ + ++++ + +
Sbjct 199 KLSLRNV-KAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKF 257
Query 601 SRDPSN----------------------ENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
R+P E+ K L +L I+FVK+
Sbjct 258 MRNPLEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSLEF----NQVIIFVKSTL 313
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIA 696
+ L + + +F + +G Q+ + +K + N I +A
Sbjct 314 RANELDKLLR---ECNFPSIAVHSGVS------------QEERIKRYKEFKEFNKRICVA 358
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
T V GIDI + NL I Y+ + + GR G+K ++ + +++ +
Sbjct 359 TDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEI 418
Query 757 KEK 759
+++
Sbjct 419 EKR 421
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P V+ +
Sbjct 80 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRE 137
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T VE ++ N + I++ TP L N
Sbjct 138 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDVE-VLSNKESYPNIVVGTPGRL-NA 193
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 194 LVRDKKLSLRNVKAFVLDEC 213
>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dhh1 PE=3 SV=1
Length=505
Score = 73.7 bits (179), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q D+ ++
Sbjct 378 FGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|Q914M3|Y007_SIFVH Putative helicase 7 OS=Sulfolobus islandicus
filamentous virus (isolate Iceland/Hveragerdi) OX=654908
GN=SIFV0007 PE=4 SV=1
Length=601
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 14/158 (9%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M KN +I APTG GK+F+++L+ K +VV+ + Q F
Sbjct 21 MSDKNLLITAPTGTGKSFLAMLMAME--------TKSRVVYTVPLRALALQLNDDFHNKV 72
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
T+E + +I T + + + + P +I DE
Sbjct 73 APLVNGYADSVALTSEVYEEDPENLEERVIFTTYEK-ADAIFRRHYPWTDRIETLIIDEI 131
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
HN + N + + +++ ++A++
Sbjct 132 HN-IGDKERGKAIENLIAYAMNEGI----RIVAMSATI 164
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/121 (15%), Positives = 38/121 (31%), Gaps = 29/121 (24%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
++F TR + L ++ + K G + + Q G
Sbjct 223 VMIFTSTRKKAEEL--YMIYDRKFQNKVAFFHAGLDAETKLRLLEETRQ----------G 270
Query 690 DHNILIATSVADEGIDIAQCNLVILYE---------------YVGNVIKMIQTRGRGRAR 734
+NI+++T+ +G++ +V ++ I+ Q GR
Sbjct 271 KYNIIVSTTALSQGVNFPFYAVV--FDDLKLPIIEYGRFTGWKQITPIEFDQICGRAGRP 328
Query 735 G 735
G
Sbjct 329 G 329
>sp|P90897|RDE12_CAEEL DEAD-box ATP-dependent RNA helicase rde-12
OS=Caenorhabditis elegans OX=6239 GN=rde-12 PE=1 SV=4
Length=959
Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/165 (17%), Positives = 56/165 (34%), Gaps = 23/165 (14%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L IL ++ TI+FV+ + DA + G
Sbjct 628 EKNAKLREIL-KQNVNGKTLKTIIFVQKKDQCDACAAKLTS------------GGMLAQT 674
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV--------GN 720
+ + ++ +++ FK++ N+L+ T + GID++ + VI ++
Sbjct 675 LHGDRSQDMREKLINDFKSN-RVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADT 733
Query 721 VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
I GR GR C + E +++ +
Sbjct 734 FIHRAGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVELIISQN 778
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 11/197 (6%)
Query 188 VEKGIKDVETEDLE-DKMETSDIQIFYQEDPECQNLSENSCP-PSEVSDTNLYSPFKPRN 245
+++ +++ + D + ++I E NS P+ + R
Sbjct 346 IDELVRETADRLADCDVGQDRAVEIRNAEKDVRLTSWTNSGLHPTILETLKRIKYNNVRT 405
Query 246 YQLELALPAMKGKNTIICAPTGCGKTFV-------SLLICEHHLKKFPQGQKG-KVVFFA 297
Q + + G + + A T GKT +L + + + G + A
Sbjct 406 IQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMDEETRNKARQDDGPLALILA 465
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q Y + V G + + +I DI+I T +++ K
Sbjct 466 PTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLNEIRNGCDILIGTCGRIMDFTVK 525
Query 358 GTIPSLSIFTLMIFDEC 374
I L ++FDE
Sbjct 526 SHISLLH-LRFLVFDEA 541
>sp|Q4I830|DRS1_GIBZE ATP-dependent RNA helicase DRS1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DRS1 PE=3 SV=1
Length=796
Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 11/169 (7%)
Query 217 PECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKGKNTIICAPT 266
PE +N + S +L P KP Q + A+ GK+ + A T
Sbjct 243 PEEENNPDKKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAET 302
Query 267 GCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGIS 325
G GKT +L L P+ +VV + Q +V +K + T
Sbjct 303 GSGKTGAFILPILERLLYRPKKIPTTRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAV 362
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + ++ D+II TP +++++ S+ +++ DE
Sbjct 363 GGLSLKAQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEA 411
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 20/157 (13%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P E+ ++ L + + Y I+F + + I G L G
Sbjct 482 PGREDKRMGYLAHVCKNLYKE----RVIIFFRQKKDAHR-ARIIFG-----------LLG 525
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ M + ++ F+ G L+AT +A G+DI + VI YE ++
Sbjct 526 LSCAELHGSMNQTQRISSVEDFR-DGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDI 584
Query 724 MIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ G R +G + + + K + K
Sbjct 585 YVHRVGRTARAGRKGVALTIAAESDRKVVKAAVKAGK 621
>sp|Q76PD3|DBP6_SCHPO ATP-dependent RNA helicase dbp6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp6
PE=2 SV=1
Length=604
Score = 74.1 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 50/301 (17%), Positives = 100/301 (33%), Gaps = 26/301 (9%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+ L Y+ + + + +R+ ES + + L + +
Sbjct 243 KSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFS---LQHLRYMVIDEADRLLD 299
Query 507 QKYEQWIVTV-----QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE---HA 558
Q ++ W+ TV C+ + D + I L Y + + A
Sbjct 300 QSFQDWVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSA 359
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE--NPKLEDLCF 616
+ + + + + E + S P+ + + +
Sbjct 360 TLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKP 419
Query 617 ILQEEYHLNPE-TITILFVKTRALVDALKNWIE-GNPKLS-FLKPGILTGRGKTNQNTGM 673
IL + T + FVK+ L +E + L+ G+ T + +
Sbjct 420 ILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFT--------SSL 471
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
+ +K I+ F A+GD N+L+ + + GID+A VI Y+ +V + GR R
Sbjct 472 SRDERKKIISRF-ATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTAR 530
Query 733 A 733
A
Sbjct 531 A 531
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 43/277 (16%), Positives = 94/277 (34%), Gaps = 60/277 (22%)
Query 145 TKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKM 204
K + +E +E L +S ++ + + AL++ R + +E +D+E +D++ +
Sbjct 31 NKTHVTASEAAIERLKKS--ASFSQAAQQALKQSRKEDNE--------RDIEMQDVDAEA 80
Query 205 ETS--------DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQ-LEL---AL 252
+ ++ F P +N++ P +++ P + L + +
Sbjct 81 QPHDLLPIPQPSVEDFVDSKPHVKNITSV--LPKWLAEPITVDPNTTVEFSSLNISSKLV 138
Query 253 PAMKGKNTI-------ICAP-----------------------TGCGKTFVSLLICEHHL 282
++ +N P TG GKT ++ L
Sbjct 139 ERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCL 198
Query 283 KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPV-----EQI 337
+ + V + Q F Y G +V +G + ++
Sbjct 199 SHRTVPRL-RCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDEN 257
Query 338 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
D+++ TP LV++++ SL M+ DE
Sbjct 258 ECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEA 294
>sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC
A1100 / Af293) OX=330879 GN=dbp10 PE=3 SV=1
Length=869
Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 49/126 (39%), Gaps = 15/126 (12%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ TI+F T+ VD L + + G + + A+K +
Sbjct 350 ESPTKHSTIVFAATKHHVDYLYSLL------------CEAGFAVSYVYGSLDQTARKIQV 397
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFL 740
F+ +G NIL+ T VA GIDI VI Y++ + GR RA R +
Sbjct 398 QNFR-TGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYS 456
Query 741 LTSNAG 746
L +A
Sbjct 457 LVRDAD 462
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/120 (23%), Positives = 44/120 (37%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 105 MDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELG 164
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + I N DIII TP ++ LK LS ++FDE
Sbjct 165 RGTDLKSVLLVGGDSLEEQFAMIAGNPDIIIATPGRFLH-LKVEMNLDLSSIRYVVFDEA 223
>sp|Q95YF3|CGH1_CAEEL ATP-dependent RNA helicase cgh-1 OS=Caenorhabditis
elegans OX=6239 GN=cgh-1 PE=1 SV=1
Length=430
Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/149 (17%), Positives = 49/149 (33%), Gaps = 16/149 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G ++ M
Sbjct 268 VHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITE------------IGYSCYYIHSKMA 315
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRG 731
+ + F+ G+ L+ + + GIDI N+VI +++ N + I GR
Sbjct 316 QNHRNRVFHDFR-QGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRF 374
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKM 760
G L+T + + ++
Sbjct 375 GHLGVAINLITYEDRHTLRRIEQELRTRI 403
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 59/368 (16%), Positives = 123/368 (33%), Gaps = 40/368 (11%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A+ G++ + A G GKT + ++ P + + + + Q + +
Sbjct 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQ--PALKAIQAMVIVPTRELALQTSQICVEL 134
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ +V +G T + ++ ++I TP +++ ++KG + + ++ DE
Sbjct 135 SKHIQLKVMVTTGGTDLRDDIMRLNGTVHLVIATPGRILDLMEKG-VAKMEHCKTLVLDE 193
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEALD--YIC 428
+ ++ L LP QV+ +A+ + + Y
Sbjct 194 A---------DKLLSQDFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEI 244
Query 429 KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKR 488
L L + ++E +Q V+ FRK++ S F + E LAK+
Sbjct 245 NLMEELTLLGVTQYYAFVQE-KQKVHCLNTLFRKLQINQSIIFCNS----TQRVELLAKK 299
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
I + + I ++ + + Q C +C L ++
Sbjct 300 ITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNL----------VCSDLLTRGIDIQAV 349
Query 549 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD----- 603
N + ++A YL + R +T L+ +E R
Sbjct 350 NVVINFDF---PRNAETYLHRIGRSGRFGHLGVAINLITYEDRHTLRRIEQELRTRIEPI 406
Query 604 PSNENPKL 611
P +PKL
Sbjct 407 PKTVDPKL 414
>sp|Q7WK66|UVRB_BORBR UvrABC system protein B OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) OX=257310
GN=uvrB PE=3 SV=1
Length=675
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 87/602 (14%), Positives = 196/602 (33%), Gaps = 101/602 (17%)
Query 233 SDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S +LY P+ P Q E + + + TG GKT + + +
Sbjct 12 SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGV--TGSGKT----YTMANMIARL 65
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG------------------ISGA 327
+ + A + Q + ++F R+ I
Sbjct 66 GRP----ALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKD 121
Query 328 TAENVPVEQ--------IVENND-IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 378
++ N +EQ ++E D +I+ T + G ++ ++I S
Sbjct 122 SSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAM----VLILRTGDRIS 177
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
++ ++ + + + +V G T + ++ L SL+
Sbjct 178 RREVLARLVAMQYTRNDADFTRGVFRVRGETIDIFPAESPELALRLTLFDDEIESLELFD 237
Query 439 IATVKHNLEELEQVVY------KPQKFFRKVESRISDKFKYIIAQLMRD-----TESLAK 487
T + + VY P++ + I ++ + +AQL+ D + L +
Sbjct 238 PLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQ 297
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE--------ESRICKALF 539
R DLE L ++ G + Y + + + D ES +
Sbjct 298 RTRFDLEMLQELG-FCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQL 356
Query 540 LYTSHLRKYNDALIISEHARMKDALD----YLKDFFSNVRAAGF-DEIEQDLTQRFEEKL 594
+ ++ R+ ALD L++F + +R F Q + +
Sbjct 357 GGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNV 416
Query 595 QE-------LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
E L + + +++DL + + L ++ T+ + + L +++
Sbjct 417 VEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQE--RVLVTTLTKRMAEDLTDFL 474
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+ ++ L ++ + + I+ + G ++L+ ++ EG+DI
Sbjct 475 SEH----GVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREGLDIP 521
Query 708 QCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ +LV + + + +IQT GR R + L + I+ + +
Sbjct 522 EVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRA 581
Query 762 ND 763
Sbjct 582 KQ 583
>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dhh1
PE=3 SV=1
Length=507
Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q D+ ++
Sbjct 378 FGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=HAS1 PE=3 SV=1
Length=610
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 66/402 (16%), Positives = 127/402 (32%), Gaps = 70/402 (17%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + S+ + + RE Q + ++K F + R
Sbjct 186 LIPAIEMLSSMRFKPRNGTGVIVVSPTRELALQIFGVARELMEKHSQTFGIVIGGANRRA 245
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
+L +I+ R+ D L + F F N+++ DE ++ L FE++
Sbjct 246 EAEKLAKGVNL-------LIATPGRLLDHLHNTQGFVFKNLKSLIIDEADRILEVGFEDE 298
Query 594 LQELESVSRD-------PSNENPKLEDLCFILQEEY---------------HLNPETITI 631
++ + + + + K+EDL I + + I
Sbjct 299 MRSIIKILPTDRQTMLFSATQTTKVEDLARISLKAGPLYINVDYRKEHSTVEGLEQGYVI 358
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD---AFKAS 688
TR L ++++ + K + + + +L+ K
Sbjct 359 CDSDTR--FRLLFSFLKKHQKKKVI--VFFSSCNSVKFYAELLNYIDLPVLELHGKLKQQ 414
Query 689 GDHN-----------ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
N LI T VA G+DI + + VI ++ + I GR R
Sbjct 415 ARTNRFFEFCNAQSGTLICTDVAARGLDIPEVDWVIQFDPPDDPRDYIHRVGRTARGSEG 474
Query 737 K----CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH-EKFIR 791
K FLL S G + K++ ++ + L + + KIL+IQ+ E I
Sbjct 475 KGRSLMFLLPSEIGFL----------KLLKEARVPLVEF--ELPANKILNIQSQLEALIT 522
Query 792 DSQEKPKPVPDKENKKLL----CRKCKALACYTADVRVIEEC 829
+ K D L + D+ + +
Sbjct 523 KNYYLNKSAKDGYRSYLQAYASHSLRSVFDVHKLDLVKVAKS 564
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 54/133 (41%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P + GK+ + A TG GKT + + ++ P+ G +V + +
Sbjct 158 QRKAIPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRFKPRNGTGVIV-VSPTRELA 216
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + E+H + G E++ + +++I TP L+++L G +
Sbjct 217 LQIFGVARELMEKHSQTFGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLHNTQGFVF 276
Query 362 SLSIFTLMIFDEC 374
+I DE
Sbjct 277 K--NLKSLIIDEA 287
>sp|Q4WCW2|SUB2_ASPFU ATP-dependent RNA helicase sub2 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=sub2 PE=3 SV=1
Length=448
Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 24/162 (15%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E+ K L +L I+FVK+ + L + + +F + +G
Sbjct 293 ESEKNRKLNELLDSLEF----NQVIIFVKSTLRANELDKLLR---ECNFPSIAVHSGVS- 344
Query 667 TNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
Q+ + +K + N I +AT V GIDI + NL I Y+ +
Sbjct 345 -----------QEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSY 393
Query 725 IQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYKEKMMND 763
+ GR G+K ++S ++I E + +
Sbjct 394 LHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPE 435
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P V+ +
Sbjct 80 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRE 137
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T +E ++ N + I++ TP L N
Sbjct 138 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDIE-VLSNKESYPNIVVGTPGRL-NA 193
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 194 LVREKKLSLRNVKAFVLDEC 213
>sp|Q5BET6|ROK1_EMENI ATP-dependent RNA helicase rok1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=rok1 PE=3 SV=1
Length=742
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 15/193 (8%)
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A +K+ ++ + + + + + ++ + E KL L ++
Sbjct 436 AKTTIKERKLSLPQTKSYPLLRLVVGLKDSAIPNIKHKLVYAATEQGKLLGLRQLIHPTA 495
Query 623 HLNPETIT----ILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
+ ++F +T AL + P + I ++
Sbjct 496 ATTSDVRLRPPFLIFTQTIPRAIALHSELLYDIPPEAGGSARIAVLHSD------LSDTQ 549
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRAR 734
+ I+ F+ G+ IL+ T + G+D N V+ Y+ + + + GR
Sbjct 550 RSDIMKGFR-KGEIWILVTTDLLARGVDFRGINGVVNYDIPNSPAVYVHRVGRTGRAGRE 608
Query 735 GSKCFLLTSNAGV 747
G + +
Sbjct 609 GGVAVTYYTKEDI 621
Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 37/153 (24%)
Query 259 NTIICAPTGCGKTF---VSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ ++ APTG GKT + ++ H P+ + V A + Q + K
Sbjct 243 DLLVVAPTGSGKTLSFMIPVINKIVRHHHTHPEERGIFAVVVAPTKELASQIVNEGRKLA 302
Query 315 ERHGYRVTGISGATAENVPVEQI------------------------------VENNDII 344
G +VT + + + +DI+
Sbjct 303 LGTGVKVTLMKKGMRVVERENEDEDVLDESNSESSESESDERTPNNKNKGPVPITKSDIL 362
Query 345 ILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
+ TP LVN L L+ L ++ DE
Sbjct 363 VSTPLQLVNALSDNKTKPLATLPLVRNLVLDEA 395
>sp|Q8GXD6|RH49_ARATH DEAD-box ATP-dependent RNA helicase 49 OS=Arabidopsis
thaliana OX=3702 GN=RH49 PE=2 SV=2
Length=558
Score = 73.7 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/189 (19%), Positives = 63/189 (33%), Gaps = 19/189 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L +L E N ++F T A VD + P L + + GK
Sbjct 252 KSSQLVHLLIE----NKNKKLVVFFMTCACVDYWGLVLSKIPTLKSI--SFFSTHGK--- 302
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
M + L +F +L+ T VA G+DI + V+ Y+ + I G
Sbjct 303 ---MDQKGRDTALASF-TEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVG 358
Query 730 R-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMN-DSILRLQTWDEAVFREKILHIQTH 786
R R R + + E + + + + + + + + + L I+
Sbjct 359 RTARMERQGRAIVFL---MPKETDYVEFMRIRRVPLQERKCSENASDVIPIIRSLAIKDR 415
Query 787 EKFIRDSQE 795
+ Q
Sbjct 416 AVLEKGLQA 424
Score = 47.1 bits (110), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQ--GQKGKV--VFFANQIPVYEQQKSV---- 309
K+ ++ A TG GKT LL +++ + +V V + + Q V
Sbjct 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
S + + G A+ +E+ N ++I TP L + +K+ ++
Sbjct 114 VSTLPNVNSVLLVGGREVEADMNTLEEEGAN--LLIGTPGRLSDMMKRMEFLDFRNLEIL 171
Query 370 IFDEC 374
I DE
Sbjct 172 ILDEA 176
>sp|H2KY86|HELQ_CAEEL Helicase POLQ-like OS=Caenorhabditis elegans
OX=6239 GN=helq-1 PE=3 SV=1
Length=923
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 91/247 (37%), Gaps = 17/247 (7%)
Query 245 NYQLELA--LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 302
++Q E + G+N I+ PTG GKT ++ ++ +K + + +
Sbjct 170 DWQQECLSDKRLLDGENCILSLPTGAGKTLIAEVLMLRE----AIVRKRNAILVLPYVAI 225
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP- 361
+++ S + + + G + + P+++ + + + T + N L I
Sbjct 226 VQEKISALAPFEDAFGINIEEYASNKGRFPPIKRR-KRVSVYVATIEK-ANMLINSLITQ 283
Query 362 -SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGVGDAKN 419
L +++ DE H I+ L + L +G Q++G++A+ + D K
Sbjct 284 GQLDRVGMVVVDELH-MIGDGGRGAILEQLLAKFLYKGTG---QIVGMSATLPNIDDLKF 339
Query 420 TDEALDYICKLCASLDASVIATVK--HNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477
A Y + + H + E + ++S D ++A+
Sbjct 340 ALRAFVYSTNFRPVELTEFVKIGQTMHQVSENGDLNPAGDLPTNNLKSTDPDGICQLLAK 399
Query 478 LMRDTES 484
L+ +
Sbjct 400 LIPKNSA 406
>sp|A4RMV8|ROK1_PYRO7 ATP-dependent RNA helicase ROK1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=ROK1 PE=3 SV=1
Length=775
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/339 (17%), Positives = 113/339 (33%), Gaps = 33/339 (10%)
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477
++ D + S D ++ E+ E+ KP K + ++
Sbjct 352 STEKKSEDQEEDVFESEDEDSLSEDDEEREKSEKPSKKPNKAPITKADILVTTPMLLLNF 411
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
L + T + KR+ + + +L + Q + + + + AC + + +
Sbjct 412 LSKGTSTTKKRLPR-VRSLILDEADVLLDQLFREQTMGIWSACRNPNLRVSFWSATMASN 470
Query 538 LFLYTSH-LRKYNDALIISEHARMK-DALDYLKDFFSNVRAAGFDEIEQDLTQR---FEE 592
+ + LR D R+ D S+ E + L R
Sbjct 471 IETHILDNLRAQADDAPAPPLIRLVVGLKDTAVPNISHRLVYTATESGKLLALRQLLHPA 530
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
S + P +E P L+ + ++FV+T AL + +
Sbjct 531 SFSTTTSSTTTPEDETP--------LRPPF--------LVFVQTIERATAL------HEE 568
Query 653 LSFLKPGILTGRGKTNQ-NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
L + P G + ++ M A+ ++ F+A+ D +LI T V G+D A N
Sbjct 569 LKYDIPAAAGGASRVAVLHSSMPESARAAVIRRFRAA-DVWVLITTDVLARGVDFAGVNG 627
Query 712 VILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGV 747
V+ Y+ G+ + GR +G + +
Sbjct 628 VVNYDVPGSAAAYVHRAGRTGRAGRKGGIAVTFYTKEDI 666
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 57/184 (31%)
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-------------KVV 294
L + A G + + APTG GKT LL + + K + + +
Sbjct 251 LAMLQGASAGVDFLAIAPTGSGKTLSFLLPAINGVLKRRAEKGETGGDSSNDTKHALEAI 310
Query 295 FFANQIPVYEQ---------QKSVFSKYFERHGYRVTGISGATAENVPVEQI-------- 337
A + Q + R G RV +T + ++
Sbjct 311 VVAPTRELASQIANEGRKLAMGTGVRVVLMRKGMRVAAEEDSTEKKSEDQEEDVFESEDE 370
Query 338 ------------------------VENNDIIILTPQILVNNLKKGTI---PSLSIFTLMI 370
+ DI++ TP +L+N L KGT L +I
Sbjct 371 DSLSEDDEEREKSEKPSKKPNKAPITKADILVTTPMLLLNFLSKGTSTTKKRLPRVRSLI 430
Query 371 FDEC 374
DE
Sbjct 431 LDEA 434
>sp|Q03532|HAS1_YEAST ATP-dependent RNA helicase HAS1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HAS1
PE=1 SV=1
Length=505
Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 60/370 (16%), Positives = 120/370 (32%), Gaps = 61/370 (16%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ F + R
Sbjct 97 LIPAIELLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR- 155
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + ++I+ R+ D L K F F N++A DE ++ L FE++
Sbjct 156 -----QEAEKLMKGVN-MLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDE 209
Query 594 LQELESVSRDPSNENP--------KLEDL-----------CFILQEEYHLNPET--ITIL 632
++++ + + ++ K+EDL ++ E + + +
Sbjct 210 MRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYV 269
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQK 679
+ L ++++ N K + L+ + QK
Sbjct 270 VCDSDKRFLLLFSFLKRNQKKKII--VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 327
Query 680 CILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + + ILI T VA G+DI + +I ++ + I GR R K
Sbjct 328 RTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGK 387
Query 738 ---CFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH-EKFIRDS 793
LT N + ++ + KI ++Q+ EK I+ +
Sbjct 388 GKSLMFLTPNELGFLRYL-----------KASKVPLNEYEFPENKIANVQSQLEKLIKSN 436
Query 794 QEKPKPVPDK 803
+ D
Sbjct 437 YYLHQTAKDG 446
Score = 69.8 bits (169), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 54/133 (41%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + G++ + A TG GKT + + H LK P+ G ++ +
Sbjct 69 QARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTG-IIVITPTRELA 127
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + E H + G E++++ +++I TP L+++L+ G +
Sbjct 128 LQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQNTKGFVF 187
Query 362 SLSIFTLMIFDEC 374
+I DE
Sbjct 188 K--NLKALIIDEA 198
>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dhh1 PE=3 SV=1
Length=507
Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q D+ ++
Sbjct 378 FGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|Q57X81|JBP2_TRYB2 Bifunctional helicase and thymine dioxygenase
JBP2 OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1)
OX=185431 GN=JBP2 PE=1 SV=1
Length=1077
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 72/518 (14%), Positives = 165/518 (32%), Gaps = 69/518 (13%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
++ G GKT VSL IC ++ ++ A + + Q +K ++ +G
Sbjct 541 VLALTMGLGKTLVSLTICYSYIYNNGPCD---ILIVAPKTLL--QHWMQEAKKWKDYGLV 595
Query 321 VTG-ISGATAENVPVEQIVENND------------IIILTPQILVNNLKK--GTIPSLSI 365
G I ++ E + N + + ++ P + + L + G P
Sbjct 596 FPGFIVLNNVDSSSFEDDLSNYEQQGTTTNPKKSYVFVINPGYIKSFLSRVKGFRP---- 651
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD 425
L++ DE H +++ S +V+ LT + +
Sbjct 652 -ALIVVDEGH-CISS-------KESKLREVLDSLYCSARVV-LTGTPV-------QNNAE 694
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 485
+ +L +D V +T+ + + ++ +S D + + + S
Sbjct 695 ELYRLVGWVDDKVHSTLPQ--RDFNEFSNSINRYVNGDDSAFCDAL--FAQRYIHEWMSP 750
Query 486 AKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHL 545
++ Q + ++ + ++ +C + +
Sbjct 751 YVFTVMKVDLPPLHDYIIICNFSAVQQKMFEER------IKVDATDNLLCLKASEHRPYH 804
Query 546 RKYNDALIISEHARMKDALD-YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESV-SRD 603
+ + + +++ G + +D ++ LE+ D
Sbjct 805 LSTHPLCFLGFLTGIWRTGQVDIEEEPGEFEELGTYRLSRDDDALAKDCSSLLENGKLAD 864
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
+ KL L IL + ++F + D + + K ++T
Sbjct 865 FVALSGKLTALISILHSIFEKME--KAVIFSQYIGSQDFIARTLTAY------KISVVTI 916
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVI 722
RGK ++ +++ F+ + L+ +T + G+D+ N VIL++ N
Sbjct 917 RGKD------CQQRRRRVVEMFRDDKNVLCLVVSTQIGAYGLDLTAANHVILWDTWWNPQ 970
Query 723 KMIQTRGRG-RARGSKCFLLTSNAGVIEKEQINMYKEK 759
Q R R SK + A E + + +
Sbjct 971 VESQAIARCYRQNQSKAVIAYKLASGFEDATVLKAQAR 1008
>sp|Q59ZH9|MAK5_CANAL ATP-dependent RNA helicase MAK5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=MAK5
PE=3 SV=2
Length=782
Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/188 (18%), Positives = 65/188 (35%), Gaps = 19/188 (10%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ T++F + V L + N + + ++ M + L+ FK
Sbjct 487 KGSTLVFANSIDSVKRLVPLL-NNLNIPAF-----------SIHSSMIQKQRLRALEKFK 534
Query 687 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLL 741
+ N +L+A+ VA G+DI + V+ Y + I GR RA + +
Sbjct 535 EASQKNEVAVLVASDVAARGLDIPNIDHVVHYHLPRSADVYIHRSGRTARAGKEGVSVMF 594
Query 742 TS--NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799
S A ++ + +S L + + + E L Q + S+
Sbjct 595 CSPQEASGPLRKLRRLVAGNSNKESRLNMHNDVKLLPIEMDLVSQIKPRVEISSKLADAS 654
Query 800 VPDKENKK 807
+ +K
Sbjct 655 ISSTATRK 662
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/148 (20%), Positives = 52/148 (35%), Gaps = 15/148 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK-----FPQGQKGKV--- 293
KP Q E A+ GK+ I A TG GKT + + + K+
Sbjct 219 KPTPIQKETIPIALSGKDVIGKATTGSGKTLAYGIPILEKYIQSLNLIKQNNKDKKINHP 278
Query 294 --VFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTP 348
+ FA + Q + +KY + I+G + + II+ TP
Sbjct 279 TGIIFAPTRELAHQVVDHLNKLAKYSPLSTRGIVSITGGLSIQKQQRLLRHGPGIIVATP 338
Query 349 QILVNNLK--KGTIPSLSIFTLMIFDEC 374
++ ++ L+ +++ DE
Sbjct 339 GRMLELVQGDSELAKRLASIDIIVLDEA 366
>sp|A2R0B5|SUB2_ASPNC ATP-dependent RNA helicase sub2 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=sub2 PE=3 SV=1
Length=440
Score = 72.9 bits (177), Expect = 5e-12, Method: Composition-based stats.
Identities = 53/358 (15%), Positives = 114/358 (32%), Gaps = 46/358 (13%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + L + +K+ + + + +
Sbjct 105 LGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGT 164
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
I +L+ + ES + L+ + + + + + V + M+ Q+
Sbjct 165 PIQKD-----VELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQI 219
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + I +A + K + L+ + + ++Q
Sbjct 220 DMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQY 279
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ E + +N KL +L L I+FVK+ + L
Sbjct 280 YIKLSE-------------AEKNRKLNELLDSL-------EFNQVIIFVKSTLRANELDK 319
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEG 703
+ + +F + +G Q+ + +K + N I +AT V G
Sbjct 320 LLR---ECNFPSIAVHSGVS------------QEERIKRYKEFKEFNKRICVATDVFGRG 364
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK----CFLLTSNAGVIEKEQINMYK 757
IDI + NL I Y+ + + GR G+K F+ T + + K+ ++
Sbjct 365 IDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFE 422
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P ++ +
Sbjct 79 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--ILVMCHTRE 136
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T VE ++ N + I++ TP L N
Sbjct 137 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDVE-LLSNKESYPNIVVGTPGRL-NA 192
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 193 LVRDKKLSLRNVKAFVLDEC 212
>sp|Q0UWC8|PRP28_PHANO Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) OX=321614 GN=PRP28 PE=3 SV=1
Length=746
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 60/183 (33%), Gaps = 16/183 (9%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
K + + P I+FV + DA+ I+ G
Sbjct 576 QGEEKRKKRLQEILNSGEFTPP--IIVFVNIKRNCDAIARDIKN------------MGFS 621
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ T ++ L + ++L+AT +A GIDI +LV+ + ++
Sbjct 622 SVTLHGSKTQEQREAALAQLREH-RVDVLVATDLAGRGIDITDVSLVVNFNMATSIESYT 680
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR R K + + G + + + K+ + I ++ + +
Sbjct 681 HRIGR-TGRAGKSGVAITFWGNEDADVLYDLKQMLTKSQISKVPEDLRKHEAAQQKGGRN 739
Query 786 HEK 788
EK
Sbjct 740 KEK 742
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/240 (20%), Positives = 94/240 (39%), Gaps = 15/240 (6%)
Query 149 MAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSE--LWIVEKGIKDVETEDLEDKM-- 204
G +K +E ++ D + + + L+ ER + E ++K + + E + ++
Sbjct 248 EQGTQKFIEAMIERDPVSGRERAERILDMERRRKEEGGRAQLDKHWSEKKLEHMRERDWR 307
Query 205 ---ETSDIQIFYQEDP-ECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNT 260
E +I P +N E+ P + +P Q A++ ++
Sbjct 308 IFKEDFNIATKGGAIPNPMRNWQESGLPDKVLRLVEHVGYAEPSAVQRAAIPIALQCRDL 367
Query 261 IICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQQKSVFSKYF 314
I A TG GKT +L ++ + P + + A + +Q + K+
Sbjct 368 IGVAVTGSGKTASFVLPLLVYISQLPPLGPSNRADGPYAIVLAPTRELAQQIEVETRKFA 427
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G+ I G + Q+ + +I+I TP LV+ +++ + LS T +I DE
Sbjct 428 APLGFNTAVIVGGHSIEEQAFQMRDGAEIVIATPGRLVDCIERRMLV-LSQCTYVIMDEA 486
>sp|Q4IPI1|ROK1_GIBZE ATP-dependent RNA helicase ROK1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=ROK1 PE=3 SV=1
Length=693
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 13/145 (9%)
Query 610 KLEDLCFILQEEYHLNPETIT----ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
KL L +L + ++F +T AL ++ + L +
Sbjct 451 KLLALRQLLHPTASDDSGPPLRPPFLVFTQTIDRATALHEELQYDIPLEAGGAARI---- 506
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
++G+T A+ I+ F+A GD ILI T V G+D A N V+ Y+ G+ +
Sbjct 507 -AALHSGLTDSARSSIMRKFRA-GDIWILITTDVLARGVDFAGVNGVVNYDVPGSSAGYV 564
Query 726 Q---TRGRGRARGSKCFLLTSNAGV 747
GR G + +
Sbjct 565 HRAGRTGRAGREGGIAVTFYTKEDI 589
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/171 (20%), Positives = 56/171 (33%), Gaps = 51/171 (30%)
Query 252 LPAMKGKN-------TIICAPTGCGKTFVSLLI--CEHHLKKFPQGQKGKV-----VFFA 297
A+K ++ + APTG GKT +S LI + L++ + G + V A
Sbjct 197 QAALKDEDGLDGGVDFLAIAPTGSGKT-ISFLIPAINNILRRRSEENTGNIHELEAVIVA 255
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV------------------------- 332
+ Q S K + G +V + T +
Sbjct 256 PTRELVHQIVSEGQKLCKGTGLKVVSMKKHTHLSADQVDMAEDSSEDEEDKESESEDDDK 315
Query 333 ----PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL-----MIFDEC 374
+ + DI++ TP +L L G P + L +I DE
Sbjct 316 KPSDDKPKQITTPDILVTTPFLLFKFLTSG--PPSTQKVLPTVRDLILDEA 364
>sp|Q921N6|DDX27_MOUSE Probable ATP-dependent RNA helicase DDX27
OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Length=760
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/137 (22%), Positives = 55/137 (40%), Gaps = 11/137 (8%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ ++ + L FK +IL+AT VA G+DI VI + V + G
Sbjct 460 HGNLSQTQRLEALRRFKDE-QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVG 518
Query 730 ---RGRARGSKCFLLTSNAGVIEKEQINMYK-----EKMMNDSILRLQTWDEAVFRE--K 779
R G L+ + KE + K + D IL+ + E + ++
Sbjct 519 RTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDVILKFRDKIEKLEKDVYA 578
Query 780 ILHIQTHEKFIRDSQEK 796
+L ++ EK ++ S+ +
Sbjct 579 VLQLEAEEKEMQQSEAQ 595
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 60/373 (16%), Positives = 113/373 (30%), Gaps = 19/373 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
+P Q + GK+ CA TG GKT L L P+ +V+
Sbjct 206 QPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTR 265
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q SV + + G + DI+I TP L+++L
Sbjct 266 ELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPS 325
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
LS ++I DE ++ + M + ++ + T + V D +
Sbjct 326 FHLSSIEVLILDEADRMLDEY-FEEQMKEII--RMCSHHRQTM-LFSATMTDEVKDLASV 381
Query 421 DEA------LDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
++ + L I + + E +V + + K
Sbjct 382 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQ 441
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
++ L ++ + NLSQ Q E K EQ + V + + ++
Sbjct 442 AHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV 501
Query 534 ICKALFLYTSHLR-KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI------EQDL 586
I + H + R + + QD+
Sbjct 502 INFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKAPVKARILPQDV 561
Query 587 TQRFEEKLQELES 599
+F +K+++LE
Sbjct 562 ILKFRDKIEKLEK 574
>sp|A6R9U4|MAK5_AJECN ATP-dependent RNA helicase MAK5 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=MAK5 PE=3
SV=1
Length=772
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 58/345 (17%), Positives = 115/345 (33%), Gaps = 43/345 (12%)
Query 429 KLCASLDASVIATVKHNLE-ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+L + ++I + L +L + + + +RI+ + Q + + A
Sbjct 264 ELSSKYPIALILSPTRELAHQLSKHITALCTNAPNINARIALLTGGLSVQKQQRVLANAD 323
Query 488 RICKDLENLSQIQNREFGTQKYEQWI--VTVQKACMVFQMPDKDEESRICKALFLYTSHL 545
+ L + + G + Q I + + +A + E I AL H
Sbjct 324 IVIGTPGRLWDVISTGHGLLRKFQNIKFLVIDEADRLLSEGHFKEVEEILTALDRKEIHH 383
Query 546 RKYNDALIISEHARMKDALDYL-KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR-- 602
+ D+ + +R + F + + Q +E + +
Sbjct 384 KVTADSESEDDASRESPRQTLVFSATFHKGLQQKLAGKGRYFDGDLLDDKQSMEYLLKKL 443
Query 603 DPSNENPKL----------EDLCFILQE------------EYHLNPETITILFVKTRALV 640
+ + PK E+L L E +P+ T++F + + V
Sbjct 444 NFREDRPKFIDVNPVAQMAENLKEGLVECPAMEKDLYLYTLMLYHPQHRTLVFTNSISAV 503
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD--HNILIATS 698
L +++ N L L ++ M A+ ++ F + +IL+AT
Sbjct 504 RRLTAFLQ-NLNLPAL-----------ALHSSMAQKARLRSVERFSSPTADPSSILVATD 551
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
VA G+DI +L+I Y + GR RA S +L
Sbjct 552 VAARGLDIKGIDLIIHYHVPRTADTYVHRSGRTARASASGKSILL 596
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/135 (16%), Positives = 46/135 (34%), Gaps = 18/135 (13%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK------------VVFFANQIPVYE 304
G + + A TG GKT + + K + + + + + +
Sbjct 224 GHDVVGKASTGSGKTLAFGIPILEYYLKNRREEPVQHNDAELSSKYPIALILSPTRELAH 283
Query 305 Q---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
Q + R+ ++G + ++++ N DI+I TP L + + G
Sbjct 284 QLSKHITALCTNAPNINARIALLTGGLSVQKQ-QRVLANADIVIGTPGRLWDVISTGHGL 342
Query 360 IPSLSIFTLMIFDEC 374
+ ++ DE
Sbjct 343 LRKFQNIKFLVIDEA 357
>sp|Q944S1|RH22_ARATH DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis
thaliana OX=3702 GN=RH22 PE=2 SV=1
Length=581
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 78/192 (41%), Gaps = 21/192 (11%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ +++ L ++ + N E T++F T V+A+ + +E + +
Sbjct 406 DSQVDALIEAVKNNNNTNTE-RTMVFANTVEAVEAVADILEK-ASIQCYR---------- 453
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ L + IL F+ +G + + T A G+D+ + VI ++ + + +
Sbjct 454 -YHKNHKLDERANILADFRETGG--VFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHR 510
Query 728 RGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHE 787
GR AR + +TS ++ + + +++ Q + A R++ + +
Sbjct 511 IGR-TARAGQYGTVTSLYTEANRDLVEA-----IREAVKMGQPVETAFSRKRGFRNKVKK 564
Query 788 KFIRDSQEKPKP 799
+ ++E +P
Sbjct 565 RAFLKAEEAEEP 576
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/135 (21%), Positives = 51/135 (38%), Gaps = 18/135 (13%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL------------KKFPQGQKGKVVFFANQIPV 302
+ GK+ I+ A TG GKT L L ++ P K + + +
Sbjct 115 LSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVML 174
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL---KKGT 359
EQ + + + G + + +++ DII+ TP L+NN+ +
Sbjct 175 CEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWPDRL---PDIIVSTPAALLNNIEPKRNRR 231
Query 360 IPSLSIFTLMIFDEC 374
+ L ++FDE
Sbjct 232 LEFLRCVKYVVFDEA 246
>sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0164500 PE=1
SV=2
Length=647
Score = 73.3 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 64/370 (17%), Positives = 127/370 (34%), Gaps = 42/370 (11%)
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS 497
+I+ + ++ V + V S + I A+L + E A + L
Sbjct 101 IISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLF 160
Query 498 QIQNREFGTQKYEQW-IVTVQKACMVFQMPDKDEESRICKAL-FLYTSHLRKYNDALIIS 555
+ R T Y+ I+ + +A + + + + + I L L + L +
Sbjct 161 DVMER-LDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEAVK 219
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
E A+ + + V+ G D +Q+L LE + + SN++ +
Sbjct 220 ELAKAGLRNPVRVEVKTEVKPTGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQ----- 274
Query 616 FILQEEYHLNPETITILF------VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
L + N +++ V A+V L + ++G+P + +
Sbjct 275 --LVDFLVQNNGKKIMVYFATCACVDYWAIVLPLLDSLKGSPIIPY-------------- 318
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ M ++ L +F A IL+ T VA G+DI +L++ Y+ + I G
Sbjct 319 HGKMKQGPREKALASFSAL-SSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAG 377
Query 730 R-GR--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
R R G L Y E + + + + + I++
Sbjct 378 RTARYDQEGDAIVFLLPKED--------TYVEFLKRRGVPLTERECSTNAVDIVPQIRSA 429
Query 787 EKFIRDSQEK 796
R+ EK
Sbjct 430 ALEDRNVMEK 439
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/125 (18%), Positives = 51/125 (41%), Gaps = 5/125 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKV--VFFANQIPVYEQQKSVFS 311
+ K+ + A TG GKT ++ L++ P + +V + + + Q +V
Sbjct 58 LSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQ 117
Query 312 KYFE--RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+F + + + G + + E +I++ TP L + +++ + ++
Sbjct 118 PFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTLNYKNLEIL 177
Query 370 IFDEC 374
I DE
Sbjct 178 ILDEA 182
>sp|A1CNV8|DRS1_ASPCL ATP-dependent RNA helicase drs1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=drs1 PE=3 SV=1
Length=826
Score = 73.7 bits (179), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/183 (17%), Positives = 67/183 (37%), Gaps = 2/183 (1%)
Query 194 DVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLELAL 252
+V+ E+ E + + E+P + ++ + F P Q +
Sbjct 279 EVDAEEAEKRKAFFAPEEKTTEEPTSKRSFQDFNLSRPILRGLASVNFTTPTPIQQKTIP 338
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIPVYEQQKSVFS 311
A+ GK+ + A TG GKT ++ L P+ +V + Q +V +
Sbjct 339 VALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVAT 398
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + G + + + D+II TP +++++ ++ +++
Sbjct 399 KLATHTDVTFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSPSFTVDTLEILVL 458
Query 372 DEC 374
DE
Sbjct 459 DEA 461
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/241 (17%), Positives = 81/241 (34%), Gaps = 27/241 (11%)
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+V D+ E L + + K ++ S A M D++D L N
Sbjct 455 ILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS--ATMTDSVDKLIRVGLNRPVRLM 512
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
+ +++ + ++ L P E +L L ++ E + I+F + +
Sbjct 513 VDSKKNTSMNLTQEFVRLR-----PGREGKRLGYLLYLCSEIFT----GRVIVFFRQKKE 563
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
++ L G + M+ + +++F+ G L+AT +
Sbjct 564 AHRVRIVFG------------LLGLKAAELHGSMSQEQRIKSVESFR-EGKVAFLLATDL 610
Query 700 ADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
A G+DI VI YE + + + R G C + + K +
Sbjct 611 ASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKVVKAAVRAG 670
Query 757 K 757
K
Sbjct 671 K 671
>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dhh1 PE=3 SV=1
Length=503
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQHRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q D+ ++
Sbjct 378 FGHLGLAINLINWEDRFNLYKIEQELGTEIQPIPQNIDKKLY 419
Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKSTKTQALILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ KG +
Sbjct 127 LALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKG-VA 185
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 186 DLSECPTFVMDEA 198
>sp|A7TGW7|DBP10_VANPO ATP-dependent RNA helicase DBP10 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP10 PE=3 SV=1
Length=977
Score = 73.7 bits (179), Expect = 6e-12, Method: Composition-based stats.
Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 22/272 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ ++ + A TG GKT +L LK + V + + Q VF ++
Sbjct 156 LQKRDIVGMARTGSGKTAAFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFS 215
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R ++G + ++ N D+I+ TP ++ LK L ++FDE
Sbjct 216 KGTHLRSVLLTGGDSLEDQFSMMMSNPDVIVATPGRFLH-LKVEMSLDLKTVEYVVFDEA 274
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEA--------LDY 426
+ M L++ L ++ +A++ LD
Sbjct 275 -----DRLFEMGFQEQLNELLAALPMNRQTLL-FSATLPSSLVDFAKAGLTNPVLVRLDA 328
Query 427 ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLA 486
K+ +L+ ++T E + + K+ D+ I +L +SL+
Sbjct 329 ETKISENLEILFLSTKNEERENNLLYLLQ---DVIKIPLGTDDQ----IKKLSDFNKSLS 381
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQK 518
+D +N + +R+ K+++ V+
Sbjct 382 DSDSEDEDNKGKQNSRKSKKGKFQKLKVSASN 413
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/251 (18%), Positives = 86/251 (34%), Gaps = 29/251 (12%)
Query 546 RKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
R+ N ++ + ++ D S+ + D +D + ++ ++ +
Sbjct 348 RENNLLYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSEDEDNKGKQNSRKSKKG----- 402
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
K + L + L E TI+F TR V+ + ++ S L G
Sbjct 403 ----KFQKLK--VSASNELPTEKSTIVFAPTRHHVEYITQLLKD----SGFLVSYLYGT- 451
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VI 722
+ A+K L F+A G +IL+ T VA G+DI VI Y + I
Sbjct 452 -------LDQHARKRQLLNFRA-GLTSILVVTDVAARGVDIPMLANVINYSLPASSKIFI 503
Query 723 KMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
+ R RG +++ + +K++ S+ + + + I
Sbjct 504 HRVGRTARAGNRGWAYSIVSETELPYMLDLELFLGKKILLTSMYEAS--CKLMKSKWIAD 561
Query 783 IQTHEKFIRDS 793
T F
Sbjct 562 GNTESSFEDPK 572
>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=drs1
PE=3 SV=1
Length=821
Score = 73.7 bits (179), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/179 (17%), Positives = 65/179 (36%), Gaps = 10/179 (6%)
Query 197 TEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK 256
E+ + K + Q +QE + + + + T + Q + A+
Sbjct 290 PEEEKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPI---------QRKTIPVALL 340
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIPVYEQQKSVFSKYFE 315
GK+ + A TG GKT ++ L P+ +V + Q +V +K
Sbjct 341 GKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRELAVQCYNVATKLAT 400
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + + + D+II TP +++++ ++ +++ DE
Sbjct 401 YTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEA 459
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 20/157 (13%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P E+ +L L ++ +E Y I+F + + ++ L G
Sbjct 530 PGREDKRLGYLLYLCKEIYT----GRVIVFFRQKREAHRVRIVFG------------LLG 573
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN--- 720
+ M+ + ++ F+ G L+AT +A G+DI VI YE +
Sbjct 574 LKAAELHGSMSQEQRIKSVENFR-DGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEI 632
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+ + R G C + + K + K
Sbjct 633 YLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKASK 669
>sp|Q6ATJ8|RH16_ORYSJ DEAD-box ATP-dependent RNA helicase 16 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0728800 PE=2
SV=1
Length=670
Score = 73.3 bits (178), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 56/138 (41%), Gaps = 10/138 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-----KKFPQGQKGKVVFFANQIP 301
Q E ++GK+ + A TG GKTF LL H L + + V
Sbjct 119 QREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELLKLSAEGRIRKSAPNVFILVPTRE 178
Query 302 VYEQQKSVFSKYFER--HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ +Q + S E +V ++ + ++ + +I++ TP + + + KG
Sbjct 179 LCQQVHNEASSLLEFCTSKLKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGI 238
Query 360 IPSLSI---FTLMIFDEC 374
I SI ++MI DE
Sbjct 239 IRGSSIKESLSMMILDEA 256
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/187 (17%), Positives = 58/187 (31%), Gaps = 49/187 (26%)
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
+ +IL + ++FV + L+ ++E G + N
Sbjct 335 KMLYILVLLKLELIQKKVLIFVNSIDSAFKLRLFLEK------------FGIRSSVLNAE 382
Query 673 MTLPAQKCILDAFKASGDHNILIATSV-----------------------------AD-- 701
+ ++ I+ AF A + LIAT A+
Sbjct 383 LPQNSRLHIIQAFNAR-LFDYLIATDDNKSKEERQANKGNKKDSRVSRKQLQQTLDAEFG 441
Query 702 --EGIDIAQCNLVILYEYVGNV---IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
GID V+ Y+ + + + GR G+ L++ I ++ NM
Sbjct 442 VVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLVSPKENGIFEDIENML 501
Query 757 KEKMMND 763
K+ D
Sbjct 502 KDVENRD 508
>sp|Q0E2Z7|RH41_ORYSJ DEAD-box ATP-dependent RNA helicase 41 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os02g0201900 PE=2
SV=2
Length=536
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/151 (19%), Positives = 62/151 (41%), Gaps = 17/151 (11%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K + + I+ + H P ++FV +R D L I + TG +
Sbjct 368 KKQKIFEIMTSKQHFKPP--AVVFVSSRIGADLLSEAIT-----------VATGLKVVSI 414
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ T+ ++ L F +G+ ++++ T V G+D+ + VIL++ ++ + + G
Sbjct 415 HGDKTMNERRESLRRF-LTGEVSVVVCTGVLGRGMDLLKVRQVILFDMPNSIDEYVHQVG 473
Query 730 RGRARGSK---CFLLTSNAGVIEKEQINMYK 757
R G + + + +E + + K
Sbjct 474 RASRMGVEGMAIVFVNEEDRNLFRELVQILK 504
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/242 (17%), Positives = 87/242 (36%), Gaps = 34/242 (14%)
Query 227 CPPSEVSDTNLYSPFKPRNY------QLELALPAMKGKNTIICAPTGCGKTFVSLLICEH 280
C S L + Y Q+++ ++ ++ ++ A TG GKT L+
Sbjct 138 CFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIA 197
Query 281 H-----LKKFPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENV 332
H ++ Q + A + Q Q V K ++ + G
Sbjct 198 HCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLP---FKTALVVGGDPLAQ 254
Query 333 PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYN-MIMFNYL 391
+ +I ++I+ TP L++ L K + L+ + + DE + + + +M +
Sbjct 255 QIYRIENGIELIVGTPGRLIDLLMKHNVD-LNKVDVFVLDEV-DCLLERGFRDQVMQIF- 311
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
+ PQV+ +A+V + + +L ++ S + ++Q
Sbjct 312 ------QALSHPQVMMFSATVN-SEVEKMSNSLAK-----NAIHIS-CGNPSRPNKSVKQ 358
Query 452 VV 453
VV
Sbjct 359 VV 360
>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DHH1 PE=3 SV=1
Length=486
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 64/201 (32%), Gaps = 22/201 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 267 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHAKMQ 314
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 315 QHARNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 372
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
L + ++ + + + + + D++++ + E R
Sbjct 373 YGHLGLAINLINWDDRFNLYNIERDLGTEIQPIPASIDKSLYV-----YENPESIPRPIS 427
Query 795 EKPK---PVPDKENKKLLCRK 812
P+ P +++
Sbjct 428 NLPRGQLPAAQGQHQNPQHGN 448
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 64 KPSPIQEESIPVALTGRDILARAKNGTGKT--AAFVIPTLERINPKISKIQCLILVPTRE 121
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ L +
Sbjct 122 LAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILD-LAGKNVA 180
Query 362 SLSIFTLMIFDEC 374
LS + I DE
Sbjct 181 DLSECPMFIMDEA 193
>sp|A4R715|DHH1_PYRO7 ATP-dependent RNA helicase DHH1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DHH1 PE=3 SV=2
Length=535
Score = 72.9 bits (177), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 55/162 (34%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHAKMQ 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 320 QQARNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 377
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + + + + T D++++
Sbjct 378 YGHLGLAINLISWEDRFNLYNIERDLGTEIQPIPSTIDKSLY 419
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT ++ + P+ K + +
Sbjct 69 KPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETIN--PKVSKIQCLILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + I++ TP +++ L +
Sbjct 127 LAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILD-LAGKNVA 185
Query 362 SLSIFTLMIFDEC 374
LS + I DE
Sbjct 186 DLSECPMFIMDEA 198
>sp|B6EU02|JBP2_LEITA Bifunctional helicase and thymine dioxygenase
JBP2 OS=Leishmania tarentolae OX=5689 GN=JBP2 PE=1 SV=1
Length=1098
Score = 73.7 bits (179), Expect = 6e-12, Method: Composition-based stats.
Identities = 84/543 (15%), Positives = 169/543 (31%), Gaps = 87/543 (16%)
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLIC 278
+S P T L S P QL + K ++ G GKT V+L +C
Sbjct 525 GADSSLPPLFVPTRLASHLAP--VQLAALGFIVERTEKQSGCVVAMTMGLGKTLVALTLC 582
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQI 337
L PQ ++ P+ + HG + ++ EQ
Sbjct 583 FSQLHLAPQAD---ILILTP-KPIIS-HWVDEKNKWAMHGLHFPHFVASDGLNSLEFEQQ 637
Query 338 VENND------------IIILTPQILVNNLKKGTIPSLSIFT--LMIFDECHN--TSKQH 381
+ + + ++ + L G + FT L+I DE H
Sbjct 638 LLEYERQKNNEKPKLGHVFVINGEYLA-----GFLRRFKRFTPLLIIVDEGHRVAAKGNK 692
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
+ LD+ +++ L+ + DA + ++ K +
Sbjct 693 -----LTESLDRLRCNL-----RIV-LSGTPLQNDASELYRLVGWVNKGVGRVL------ 735
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
P K F+++ + I+ + +A+ +D +
Sbjct 736 --------------PPKRFQELANDINQFVEGDDGAFYNAV--MAQEYIQDWMRGFVFRE 779
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
E +++ + + + +K + T H + A +
Sbjct 780 MENDLPPLHDYLLICGSSDVQREYEEKLGLTETTMTALKATEHRPHHLSTHPACYLAFIS 839
Query 562 DALDYLK-----DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD-PSNENPKLEDLC 615
D+ + +N ++E+ T R E +Q +E+ D + + K+ L
Sbjct 840 DSYQSMVSGWTVRAQANTSRMRVSQLEEIDTMRLEHYVQMVENEQLDTFIDLSGKMRVLV 899
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
I+ I+F D + + L+ T RG+ +Q+
Sbjct 900 DIVLRVQARKE--KLIIFSLYVGSQDLIHRTLTA------LRVCTFTVRGRDSQD----- 946
Query 676 PAQKCILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
++ + F + D +L+ +T +A G+D N V+L++ N Q R R
Sbjct 947 -RRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTAANHVVLFDSWWNPQVDAQAIARAYRR 1005
Query 735 GSK 737
+
Sbjct 1006 NQR 1008
>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os02g0641800 PE=2 SV=2
Length=508
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/164 (18%), Positives = 59/164 (36%), Gaps = 18/164 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 359 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKML 406
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ + GR
Sbjct 407 QDHRNRVFHDFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRF 465
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL-QTWDEAVF 776
G L + + +++ N+Y+ E+ + I + D+A++
Sbjct 466 G---HLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDQAIY 506
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/319 (18%), Positives = 111/319 (35%), Gaps = 32/319 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ G + + A G GKT + K + +VV
Sbjct 156 RPSPIQEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDQEKNAIQVVILVPTRE 213
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + +V +G T+ + ++ + +++ TP +++ KKG
Sbjct 214 LALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICI 273
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAK 418
L +++I DE + ++ + LP Q++ +A+ V +
Sbjct 274 -LKDCSMLIMDEA---------DKLLSPEFQPSVEQLIRYLPASRQILMFSATFPVTVKE 323
Query 419 NTDEAL--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
D+ L Y+ L L I +EE Q V+ F K++ S F +
Sbjct 324 FKDKYLPKPYVINLMDELTLKGITQFYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSVN 382
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ E LAK+I + + I + + + AC +C
Sbjct 383 R----VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL----------VCT 428
Query 537 ALFLYTSHLRKYNDALIIS 555
LF ++ N +
Sbjct 429 DLFTRGIDIQAVNVVINFD 447
>sp|Q5ZBH5|RH25_ORYSJ DEAD-box ATP-dependent RNA helicase 25 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0618400 PE=2
SV=1
Length=594
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 61/391 (16%), Positives = 141/391 (36%), Gaps = 44/391 (11%)
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
LP + L+A D+ I L + V ++L +
Sbjct 182 LPAIEVLSALPN----SRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVV 237
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACM 521
+R++ + + + A + + R+ +EN R G + ++ + +A
Sbjct 238 IGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVK-----VLVLDEADR 292
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFD 580
+ M + + RI ++ L + + E R + K++ F N G +
Sbjct 293 LLDMGFRRDIERIIASVPKERQTLLF---SATVPEEVRQISHIAMKKNYKFINTVKDGDE 349
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
E ++Q F P + + L +L++ + + I+F T +
Sbjct 350 ETHAQVSQMFM----------IAPLDLH--FSILYDVLKKHVAEDADYKVIIFCTTAMVT 397
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
+ + L+ I + +Q+ + + D F+ S IL+++ V+
Sbjct 398 KLVAEILSQ------LRLNIREIHSRKSQSA------RTKVSDEFRKSRGL-ILVSSDVS 444
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKE 758
G+D LVI + + I GR GR + + LL + EK ++ K+
Sbjct 445 ARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLA---PWEKYFLSSIKD 501
Query 759 KMMNDSIL-RLQTWDEAVFREKILHIQTHEK 788
++++ + + + + + ++ + ++ K
Sbjct 502 LSISEATVPSVDSSTQTIVKDAVRKVEMRSK 532
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/132 (20%), Positives = 50/132 (38%), Gaps = 14/132 (11%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK------VVFFANQIPVYEQ--- 305
++GK+ + A TG GKT LL L P ++ + ++ + Q
Sbjct 161 LQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAV 220
Query 306 -QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPS 362
K + + V G + T E ++ I++ TP L ++++ G
Sbjct 221 EAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQA--NPCQILVATPGRLKDHVENTPGFSTR 278
Query 363 LSIFTLMIFDEC 374
L +++ DE
Sbjct 279 LKGVKVLVLDEA 290
>sp|Q6CH90|SUB2_YARLI ATP-dependent RNA helicase SUB2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SUB2 PE=3
SV=2
Length=441
Score = 72.5 bits (176), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 18/178 (10%)
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+E + + L L+ D ++ K L +L I+FVK+ + +
Sbjct 261 LEILVDDEGKLTLHGLQQYYVDVEEKS-KNRKLGDLLDNLEF----NQVIIFVKSTSRAN 315
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L + N G T ++G+ + FK I ++T V
Sbjct 316 GLSQVLNAN------------GFPCTAVHSGIPQEERIARYKEFKEF-KKRICVSTDVFG 362
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GIDI + NL I Y+ + + GR G+K ++ + +KE + +E+
Sbjct 363 RGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAKIQER 420
Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 53/140 (38%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A G GKT V +L L+ P VV +
Sbjct 79 HPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECS--VVVLCHTRE 136
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G + +E +++N + +I+ TP L +
Sbjct 137 LAYQIMNEYARFSKYLPDV--KTAVFYGGSPIQKDIE-LIQNKETSPHVIVATPGRL-HA 192
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + L + DEC
Sbjct 193 LVRDKHLRLGNVKTFVIDEC 212
>sp|Q74Z73|HAS1_EREGS ATP-dependent RNA helicase HAS1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=HAS1 PE=3 SV=2
Length=504
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 53/300 (18%), Positives = 99/300 (33%), Gaps = 46/300 (15%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ F + R
Sbjct 94 LLPAIEMLHSLKFKPRNGTGVIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRR- 152
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L+I+ R+ D L K F F N++A DE ++ L FE++
Sbjct 153 -----QEAEKLAKGVN-LLIATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEDE 206
Query 594 LQELESVSRDPSNENP--------KLEDLCFI------LQEEYHLNPETITILFVKTRAL 639
++++ + + ++ K+EDL I L ET T ++ +
Sbjct 207 MKQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVDSEKETSTADGLEQGYV 266
Query 640 V-------DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQK 679
V L +++ + L+ + QK
Sbjct 267 VCDSDKRFLLLFTFLKKFQNKKII--VFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQK 324
Query 680 CILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + + IL+ T VA G+DI + +I ++ + I GR R K
Sbjct 325 RTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGK 384
Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 53/133 (40%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLI---CEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P M G++ + A TG GKT LL H LK P+ G +V +
Sbjct 66 QARTIPPLMAGRDVLGAAKTGSGKTLAFLLPAIEMLHSLKFKPRNGTGVIV-ITPTRELA 124
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + E H + G E++ + +++I TP L+++L+ G +
Sbjct 125 LQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTKGFVF 184
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 185 K--NLKALVIDEA 195
>sp|Q9DBN9|DDX59_MOUSE Probable ATP-dependent RNA helicase DDX59
OS=Mus musculus OX=10090 GN=Ddx59 PE=1 SV=1
Length=619
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 65/155 (42%), Gaps = 9/155 (6%)
Query 224 ENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E+ P ++ S ++ P Q+++ + G++ + A TG GKT + + +
Sbjct 206 EHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT--AAFLLPVII 263
Query 283 KKFPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
+ F + + + + Q Q R + + G + ++ +
Sbjct 264 RAFSEDKTPSALILTPTRELAIQIERQAKELMSGLPR--MKTVLLVGGLPLPPQLYRLRQ 321
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ +II TP L++ +K+ ++ SLS +++ DE
Sbjct 322 HVKVIIATPGRLLDIIKQSSV-SLSGIKIVVVDEA 355
Score = 72.9 bits (177), Expect = 8e-12, Method: Composition-based stats.
Identities = 61/388 (16%), Positives = 140/388 (36%), Gaps = 48/388 (12%)
Query 410 ASVGVGDAKNTDEALDYICK--LCASLDASVIATVKHNLE-ELEQVVYKPQKFFRKVESR 466
AS G K L I + +++I T L ++E+ + ++++
Sbjct 245 ASADTGSGKTAAFLLPVIIRAFSEDKTPSALILTPTRELAIQIERQAKELMSGLPRMKTV 304
Query 467 ISD---KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF 523
+ + +L + + + + L+ + Q G + IV V +A +
Sbjct 305 LLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIK-----IVVVDEADTML 359
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
+M + + + +T D I A + D+++ L D + +
Sbjct 360 KMGFQQQ----VLDVLEHTPG-----DCQTILVSATIPDSIEQLTDQLLHNPVRIITGDK 410
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
++++ DP+ K + L IL ++ P ++FV + D L
Sbjct 411 ----NLPCASVRQIILWVEDPA----KKKKLFEILNDQKLFKPP--VLVFVDCKLGADLL 460
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
++ +TG T+ ++ + ++ IL GD+ ++++T V G
Sbjct 461 SEAVQK-----------ITGLNSTSIHSEKSQVERRDILKGL-LEGDYEVVVSTGVLGRG 508
Query 704 IDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
+D+ LV+ ++ ++ + + GR G+ + +N+ + + K
Sbjct 509 LDLVNVKLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT- 567
Query 761 MNDSILRLQTWDEAVFREKILHIQTHEK 788
SIL Q + E+ Q ++
Sbjct 568 --GSILPPQLLNSPYLHEQKRKEQQKDR 593
>sp|Q1DI07|SUB2_COCIM ATP-dependent RNA helicase SUB2 OS=Coccidioides
immitis (strain RS) OX=246410 GN=SUB2 PE=3 SV=1
Length=443
Score = 72.5 bits (176), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 58/162 (36%), Gaps = 24/162 (15%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
E K L +L I+FVK+ + L + + +F + +G
Sbjct 288 EAEKNRKLNELLDNLEF----NQVIIFVKSTLRANELDKLLR---ECNFPSIAVHSGVS- 339
Query 667 TNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
Q+ + +K + N I +AT V GIDI + NL I Y+ +
Sbjct 340 -----------QEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSY 388
Query 725 IQTRGRGRARGSK---CFLLTSNAGVIEKEQINMYKEKMMND 763
+ GR G+K ++S + + I E + +
Sbjct 389 LHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPE 430
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/156 (21%), Positives = 60/156 (38%), Gaps = 14/156 (9%)
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
++D P + + Q+ + +K + + A +G GKT V +L + L+
Sbjct 68 KPELLRAITDCGFEHPSEVQ--QVCIPTAILKV-DVLCQAKSGLGKTAVFVLTTLNQLEP 124
Query 285 FPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
P ++ + + Q + + FSKY + G T +E + +
Sbjct 125 VPGECS--ILVMCHTRELAYQIKNEYARFSKYLPDV--KTAVFYGGTPMQKDIEVLSSKD 180
Query 342 ---DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I++ TP L N L + SL + DEC
Sbjct 181 TYPNIVVGTPGRL-NALVREKKLSLRNIKAFVLDEC 215
>sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp10 PE=3 SV=1
Length=932
Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 87/254 (34%), Gaps = 27/254 (11%)
Query 495 NLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALII 554
L++I + T++ + T+ K+ + F E + + S +A
Sbjct 254 QLTEILHGLPSTRQTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISP--DLQNAFFS 311
Query 555 SEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 614
+ + AL Y+ + + ++ + K + + ++ +
Sbjct 312 VKSGDKEGALMYILHNVIKMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFK-- 369
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+ TI+F T+ VD L + + G + +
Sbjct 370 --------ESPTKHSTIIFAATKHHVDYLYSLLNE------------AGFATSYAYGSLD 409
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
A+K + F+ +G NIL+ T VA GIDI VI Y++ + GR RA
Sbjct 410 QTARKIQVHNFR-TGISNILVVTDVAARGIDIPILANVINYDFPSQAKIFVHRVGRTARA 468
Query 734 -RGSKCFLLTSNAG 746
R + L ++
Sbjct 469 GRTGWSYSLVRDSD 482
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M+ ++ + A TG GKT ++ LK + + + + Q V +
Sbjct 125 MEDQDVVGMARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELG 184
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + G + + N DI+I TP ++ LK LS ++FDE
Sbjct 185 KGTDLKAVLLVGGDSLEEQFSMMAGNPDIVIATPGRFLH-LKVEMNLDLSSIRYVVFDEA 243
>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DHH1
PE=3 SV=1
Length=549
Score = 72.9 bits (177), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 56/165 (34%), Gaps = 14/165 (8%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 255 LHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCYYSHAKMP 302
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ G L+ + + GIDI N+VI +++ + GR R
Sbjct 303 QQARNKVFHEFR-QGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG-R 360
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
L + ++ + ++++ + T D++++ +
Sbjct 361 FGHLGLAINLMSWNDRYSLYKIEQELGTEIKPIPATIDKSLYVAE 405
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + I P+ K + +
Sbjct 52 KPSPIQEESIPMALAGRDILARAKNGTGKT--ASFIIPCLQLVKPKLNKVQALILVPTRE 109
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G + +G T+ + ++ + I++ TP +++ L +
Sbjct 110 LALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLD-LAARKVV 168
Query 362 SLSIFTLMIFDEC 374
LS L + DE
Sbjct 169 DLSECPLFVMDEA 181
>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis
thaliana OX=3702 GN=RH6 PE=2 SV=2
Length=528
Score = 72.5 bits (176), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/164 (18%), Positives = 59/164 (36%), Gaps = 18/164 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 379 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKMV 426
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ + GR
Sbjct 427 QDHRNRVFHDFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRF 485
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRLQTW-DEAVF 776
G L + V +++ MY+ E+ + I + + D+A++
Sbjct 486 G---HLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSLIDKAIY 526
Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/319 (17%), Positives = 105/319 (33%), Gaps = 32/319 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G + + A G GKT K P+ + V
Sbjct 176 KPSPIQEESIPIALTGSDILARAKNGTGKT--GAFCIPTLEKIDPENNVIQAVILVPTRE 233
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + V +G T+ + ++ + +++ TP +++ KKG
Sbjct 234 LALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCV 293
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAK 418
L +++ DE + ++ + LP Q++ +A+ V
Sbjct 294 -LKDCAMLVMDEA---------DKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKS 343
Query 419 NTDEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
D L YI L L + +EE Q V+ F K++ S F
Sbjct 344 FKDRYLKKPYIINLMDQLTLMGVTQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFC---- 398
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ R+ + ++++ F +V + + + + +C
Sbjct 399 -------NSVNRVELLAKKITELGYSCFYI---HAKMVQDHRNRVFHDFRNGACRNLVCT 448
Query 537 ALFLYTSHLRKYNDALIIS 555
LF ++ N +
Sbjct 449 DLFTRGIDIQAVNVVINFD 467
>sp|A2QAX7|DRS1_ASPNC ATP-dependent RNA helicase drs1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=drs1 PE=3 SV=1
Length=824
Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 69/193 (36%), Gaps = 11/193 (6%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF----------K 242
+D + E D E + F+ + E + S + + NL P
Sbjct 272 RDSDEESQVDAEEEEKRKAFFAPEEEKTSESAMADAKRSFQEFNLSRPILRGLAGVNFSN 331
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIP 301
P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 332 PTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVAILMPTRE 391
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q +V +K + G + + + D+II TP +++++
Sbjct 392 LAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASF 451
Query 362 SLSIFTLMIFDEC 374
++ +++ DE
Sbjct 452 TVDTLEILVLDEA 464
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/212 (17%), Positives = 72/212 (34%), Gaps = 30/212 (14%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P E+ +L L ++ +E Y I+F + + ++ L G
Sbjct 535 PGREDKRLGYLLYLCKEIYT----GRVIVFFRQKKEAHRVRIIFG------------LLG 578
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN--- 720
+ M+ Q+ ++ F+ G L+AT +A G+DI VI YE +
Sbjct 579 LKAAELHGSMS---QEQSVENFR-EGKAAFLLATDLASRGLDIKGVETVINYEAPQSHEI 634
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK-------EKMMNDSILRLQTWDE 773
+ + R G C + + K + K +++ ++
Sbjct 635 YLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEPAVADSWAAKA 694
Query 774 AVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 805
+++ + + EK + + V EN
Sbjct 695 EELADEVEEVLSEEKLEKQLAQAEMQVTKGEN 726
>sp|Q9W3Y5|Y4443_DROME Putative ATP-dependent RNA helicase CG14443
OS=Drosophila melanogaster OX=7227 GN=CG14443 PE=3 SV=2
Length=736
Score = 72.9 bits (177), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/207 (20%), Positives = 81/207 (39%), Gaps = 26/207 (13%)
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
M D E IC+ L H + + S + +K + ++ +R + I
Sbjct 487 MIDVGLEGNICRLLCRLRPHAQLIVSSTSWSSN--LKRMANKFLGQYTAIRVGEINNIGV 544
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE-TITILFVKTRALVDAL 643
L Q ++++ + +S K+E L L Y + +++VK + +V+ L
Sbjct 545 RL-QNIRQRVEVVNGLS--------KVERLMKELTAIYDTSDIPGKVVIYVKRQKVVEEL 595
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ I + + G T + I+ F +G +NI++AT +
Sbjct 596 VDLIRNCVPCEGI-------------HGGRTAQENQGIIHDF-GTGAYNIIVATQMTSNC 641
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGR 730
+D+ VI Y++ N+ K +Q R
Sbjct 642 LDVPGIRYVINYDFPDNIDKYVQRMSR 668
>sp|Q54TJ4|DDX27_DICDI Probable ATP-dependent RNA helicase ddx27
OS=Dictyostelium discoideum OX=44689 GN=ddx27 PE=3 SV=1
Length=783
Score = 73.3 bits (178), Expect = 8e-12, Method: Composition-based stats.
Identities = 55/291 (19%), Positives = 108/291 (37%), Gaps = 26/291 (9%)
Query 539 FLYTSHLRKYNDALIISEHARMKDA-LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
+ + K ++ + + A L+ + + ++ D + L++
Sbjct 351 MGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQ- 409
Query 598 ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK 657
E V P + + + L + ++ TI+F +++ V L+ LS LK
Sbjct 410 EFVKIKPQHLSDRPAILLSLCTRVFNQGG---TIIFCRSKKEVHRLRIIF----GLSDLK 462
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
L G ++ + L F+ G N L+A+ VA G+DI VI Y
Sbjct 463 AAELHG--------NLSQEQRFDSLQQFR-DGQVNYLLASDVASRGLDIIGVKTVINYNM 513
Query 718 VGNVIKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
N+ I G R G C +T N + K+ + + K + S+ +
Sbjct 514 PNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVS---QDNVN 570
Query 775 VFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV 825
+R +I + E +E+ K ++ +K L + K ++ A+V
Sbjct 571 FWRNRIEEL--TEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVET 619
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 57/134 (43%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVVFFANQI 300
+P Q + A+ GK+ + A TG GKT LL + E L + + + +V+
Sbjct 212 QPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTR 271
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +SV + I G + ++ ++ D++I TP L+++L
Sbjct 272 ELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPGRLIDHLLNAHG 331
Query 361 PSLSIFTLMIFDEC 374
L ++I DE
Sbjct 332 IGLDDLEILILDEA 345
>sp|A4H7G5|JBP2_LEIBR Bifunctional helicase and thymine dioxygenase
JBP2 OS=Leishmania braziliensis OX=5660 GN=JBP2 PE=3 SV=1
Length=1098
Score = 73.3 bits (178), Expect = 8e-12, Method: Composition-based stats.
Identities = 83/542 (15%), Positives = 167/542 (31%), Gaps = 87/542 (16%)
Query 224 ENSCPPSEVSDTNLYSPFKPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLICE 279
+S P T L S P QL + K ++ G GKT V+L +C
Sbjct 526 ADSSLPPLFVPTRLASQLAP--VQLAALGFIVERTNKQSGCVVAMTMGLGKTLVALTLCF 583
Query 280 HHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIV 338
HL PQ ++ P+ + +G + ++ EQ +
Sbjct 584 SHLHLAPQAD---ILILTP-KPIIS-HWVDEKNKWGMYGLHFPHFVASDGLNSLEFEQQL 638
Query 339 ENND------------IIILTPQILVNNLKKGTIPSLSIFT--LMIFDECHN--TSKQHP 382
+ + ++ + L G + FT L+I DE H
Sbjct 639 LEYERQKNNEKPKAGHVFVINSEYLA-----GFLRRFRRFTPFLIIVDEGHRVAAKGNK- 692
Query 383 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATV 442
+ LD+ +V+ L+ + DA + ++ K +
Sbjct 693 ----LTESLDRLRCNL-----RVV-LSGTPLQNDASELYRLVGWVNKGVSK------VLP 736
Query 443 KHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNR 502
+EL + + + D + A + ++ +D +
Sbjct 737 PKRFQELANSINQFVE---------GDDGAFYNAVMAQEY-------IQDWMRGFVFREM 780
Query 503 EFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD 562
E +++ + + + +K + T H + A + +
Sbjct 781 ENDLPPLHDYLLVCGSSNVQREYEEKLGLTETAMTALRATEHRPHHLSTHPACYLAFISN 840
Query 563 ALDYLK-----DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP-SNENPKLEDLCF 616
+ SN ++E+ R E+ Q +E+ D N + K+ L
Sbjct 841 CYQSMVSGWTVRAQSNTSRLRTTQLEEIDAMRLEQYAQMIENEQLDAFINVSGKMRVLVD 900
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
I+ I+F D + + L+ T RG+ +Q+
Sbjct 901 IVLRVQARKE--KLIIFSLYVGSQDLIHRTLTA------LRVCTFTVRGRDSQD------ 946
Query 677 AQKCILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
++ + F + D +L+ +T +A G++ N V+L++ N Q R R
Sbjct 947 RRRRAMHEFSENKDLTVLVLSTKIAAYGLEFTAANHVVLFDSWWNPQADAQAIARAYRRN 1006
Query 736 SK 737
+
Sbjct 1007 QR 1008
>sp|Q3SZ40|DDX56_BOVIN Probable ATP-dependent RNA helicase DDX56
OS=Bos taurus OX=9913 GN=DDX56 PE=2 SV=1
Length=546
Score = 72.5 bits (176), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 68/169 (40%), Gaps = 21/169 (12%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-----QKGKVVFFANQIPVYEQQKS 308
A++GK+ + A TG GKT + L Q + + + Q +S
Sbjct 41 ALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRALVLVPTKELARQAQS 100
Query 309 VFSKYFERHG--YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ + RV +S A ++E D+++ TP ++N+L++ +
Sbjct 101 MIQQLAAYCARDIRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLKLRDSM 160
Query 367 TLMIFDECHNTSKQHPYNMIMFNY-LDQKLGGSSGPLPQV---IGLTAS 411
L++ DE ++F++ +++L LP++ ++A+
Sbjct 161 ELLVVDEA----------DLLFSFGFEEELKSLLCHLPRIYQAFLMSAT 199
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 72/331 (22%)
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ V + + K + Q + LA +D+ ++ N Q V ++K
Sbjct 81 QAVRALVLVPTKELARQAQSMIQQLAAYCARDI----RVANVSAAEDSASQRAVLMEKPD 136
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE---------HARMKDALDYL---- 567
+V P SRI L LR + L++ E +K L +L
Sbjct 137 VVVGTP-----SRILNHLQQDNLKLRDSMELLVVDEADLLFSFGFEEELKSLLCHLPRIY 191
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
+ F + + ++L L+ ES P + + +C ++++ L
Sbjct 192 QAFLMSATFNEDVQALKELVLHNPVTLKLQESQLPGPDQLQ-QFQVVCETEEDKFLLLYA 250
Query 628 --------TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
++LFV T L+ ++E F P + N + L ++
Sbjct 251 LLKLSLIRGKSLLFVNTLERSYRLRLFLEQ-----FSIPACVL-------NGELPLRSRC 298
Query 680 CILDAFKASGDHNILIATSV---------------------------ADEGIDIAQCNLV 712
I+ F G ++ +IAT GID V
Sbjct 299 HIISQF-NQGFYDCVIATDAEVLGPPVKGKHRGKGPKRDKASDPEAGVARGIDFHHVCAV 357
Query 713 ILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ ++ I GR RA L
Sbjct 358 LNFDLPPTPEAYIHRAGRTARANNPGIVLTF 388
>sp|A3LWX3|DHH1_PICST ATP-dependent RNA helicase DHH1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DHH1 PE=3 SV=1
Length=509
Score = 72.5 bits (176), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 13/121 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 255 LHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCYYSHAKMP 302
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
A+ + F+ G L+ + + GIDI N+VI +++ + GR
Sbjct 303 QQARNKVFHEFR-QGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRF 361
Query 735 G 735
G
Sbjct 362 G 362
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 54/133 (41%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + I + P+ K + +
Sbjct 52 KPSPIQEESIPMALAGRDVLARAKNGTGKT--ASFIIPSLQQIKPKLNKIQALILVPTRE 109
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G + +G T+ + ++ + +++ TP +++ L ++
Sbjct 110 LALQTSQVVRTLGKHLGIQCMVTTGGTSLKDDILRLNDPVHVLVGTPGRVLD-LAARSVA 168
Query 362 SLSIFTLMIFDEC 374
LS L + DE
Sbjct 169 DLSECPLFVMDEA 181
>sp|Q2U6P7|SUB2_ASPOR ATP-dependent RNA helicase sub2 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=sub2
PE=3 SV=1
Length=441
Score = 72.1 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/356 (14%), Positives = 114/356 (32%), Gaps = 42/356 (12%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + L + +K+ + + + +
Sbjct 106 LGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGT 165
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
I + + + ES + L+ + + + + + V + M+ Q+
Sbjct 166 PIQKDVEVLSNK-----ESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLDQI 220
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + I +A + K + L+ + + ++Q
Sbjct 221 DMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQY 280
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ E + +N KL +L L I+FVK+ + L
Sbjct 281 YIKLSE-------------AEKNRKLNELLDSL-------EFNQVIIFVKSTLRANELDK 320
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEG 703
+ + +F + +G Q+ + +K + N I +AT V G
Sbjct 321 LLR---ECNFPSIAVHSGVS------------QEERIKRYKEFKEFNKRICVATDVFGRG 365
Query 704 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
IDI + NL I Y+ + + GR G+K ++ + +++ + +++
Sbjct 366 IDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKR 421
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P V+ +
Sbjct 80 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRE 137
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T VE ++ N + I++ TP L N
Sbjct 138 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDVE-VLSNKESYPNIVVGTPGRL-NA 193
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 194 LVRDKKLSLRNVKAFVLDEC 213
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca
fascicularis OX=9541 GN=DDX1 PE=2 SV=1
Length=740
Score = 72.9 bits (177), Expect = 9e-12, Method: Composition-based stats.
Identities = 47/251 (19%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
TQ Y +I + K + +C A + + +K D
Sbjct 377 TQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ + ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 44/261 (17%), Positives = 87/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLTQGYSDFINRMHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
V D K + A+L + + + E++++ P K E
Sbjct 394 V--------TSDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKD---LENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K+ +++ N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DHH1 PE=3 SV=1
Length=625
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/329 (13%), Positives = 91/329 (28%), Gaps = 44/329 (13%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G TAS + + +L +I L + + L + Q +
Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTT 144
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
+ D + + + + + ++ G + V V
Sbjct 145 LRDDILRLQQPVHI--------LVGTPGRILDLGSK--GIASLNKCGVFVMDEADKLLSE 194
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
D AL + ++ + +K+ D + DE+
Sbjct 195 DFMPVIEQTLALCPQERQVMLFSATFPWT----VKEFKD--QHMVQPYEINLMDELTLKG 248
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ ++E + V L + +I+F + V+ L
Sbjct 249 VTQYYAYVEESQKV---------------HCLNTLFSKLQINQSIIFCNSTNRVELLAKK 293
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ G + M + + F+ +G L+ + + GIDI
Sbjct 294 VTE------------LGYSCFYSHAKMQQAHRNRVFHDFR-NGMTRNLVCSDLLTRGIDI 340
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARG 735
N+VI +++ + GR G
Sbjct 341 QAVNVVINFDFPRTAESYLHRIGRSGRFG 369
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/379 (15%), Positives = 123/379 (32%), Gaps = 41/379 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q + A+ G++ + A G GKT + I + + +
Sbjct 58 RPSPIQEQAIPMALTGRDILARAKNGTGKT--ASFIIPTLNRINTSLSHIQALILVPTRE 115
Query 302 VYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q V +V +G T + ++ + I++ TP +++ KG I
Sbjct 116 LALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKG-I 174
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDA 417
SL+ + + DE + ++ + + P QV+ +A+
Sbjct 175 ASLNKCGVFVMDEA---------DKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVK 225
Query 418 KNTDEAL--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ D+ + Y L L + +EE ++ V+ F K++ S F
Sbjct 226 EFKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQK-VHCLNTLFSKLQINQSIIFC--- 281
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
+ R+ + ++++ F + + + + + + +C
Sbjct 282 --------NSTNRVELLAKKVTELGYSCFYS---HAKMQQAHRNRVFHDFRNGMTRNLVC 330
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
L ++ N + + A YL + R LT L
Sbjct 331 SDLLTRGIDIQAVNVVINFDF---PRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY 387
Query 596 ELES-----VSRDPSNENP 609
+ES ++ P+ +P
Sbjct 388 RIESELGTEIAPIPAVIDP 406
>sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DHH1 PE=3 SV=1
Length=625
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/329 (13%), Positives = 91/329 (28%), Gaps = 44/329 (13%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G TAS + + +L +I L + + L + Q +
Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTT 144
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
+ D + + + + + ++ G + V V
Sbjct 145 LRDDILRLQQPVHI--------LVGTPGRILDLGSK--GIASLNKCGVFVMDEADKLLSE 194
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
D AL + ++ + +K+ D + DE+
Sbjct 195 DFMPVIEQTLALCPQERQVMLFSATFPWT----VKEFKD--QHMVQPYEINLMDELTLKG 248
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ ++E + V L + +I+F + V+ L
Sbjct 249 VTQYYAYVEESQKV---------------HCLNTLFSKLQINQSIIFCNSTNRVELLAKK 293
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ G + M + + F+ +G L+ + + GIDI
Sbjct 294 VTE------------LGYSCFYSHAKMQQAHRNRVFHDFR-NGMTRNLVCSDLLTRGIDI 340
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARG 735
N+VI +++ + GR G
Sbjct 341 QAVNVVINFDFPRTAESYLHRIGRSGRFG 369
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 56/379 (15%), Positives = 123/379 (32%), Gaps = 41/379 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q + A+ G++ + A G GKT + I + + +
Sbjct 58 RPSPIQEQAIPMALTGRDILARAKNGTGKT--ASFIIPTLNRINTSLSHIQALILVPTRE 115
Query 302 VYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q V +V +G T + ++ + I++ TP +++ KG I
Sbjct 116 LALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKG-I 174
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDA 417
SL+ + + DE + ++ + + P QV+ +A+
Sbjct 175 ASLNKCGVFVMDEA---------DKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVK 225
Query 418 KNTDEAL--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ D+ + Y L L + +EE ++ V+ F K++ S F
Sbjct 226 EFKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQK-VHCLNTLFSKLQINQSIIFC--- 281
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
+ R+ + ++++ F + + + + + + +C
Sbjct 282 --------NSTNRVELLAKKVTELGYSCFYS---HAKMQQAHRNRVFHDFRNGMTRNLVC 330
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
L ++ N + + A YL + R LT L
Sbjct 331 SDLLTRGIDIQAVNVVINFDF---PRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY 387
Query 596 ELES-----VSRDPSNENP 609
+ES ++ P+ +P
Sbjct 388 RIESELGTEIAPIPAVIDP 406
>sp|Q751D1|DBP6_EREGS ATP-dependent RNA helicase DBP6 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP6 PE=3 SV=1
Length=607
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/178 (17%), Positives = 63/178 (35%), Gaps = 21/178 (12%)
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
++FVK+ L + G N + ++
Sbjct 428 STESLRILVFVKSNEASIRLAALLTAMVGNGLSAVSTTVGSINNNNSKATNRKL----IE 483
Query 684 AFKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS--KC 738
AF A SG +IL++T + G+DI+ + VI Y+ + + + GR RA S
Sbjct 484 AFAAGASGHCSILVSTDLMSRGLDISGISHVINYDLPISSQQYVHRCGRTARANTSGTAV 543
Query 739 FLLTSNAGV------------IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
LL + +++ ++ + ++ L D A +++ + ++
Sbjct 544 NLLVGKGEQNFWKDHIDSDISRAPDGSHLFFDEEQREQLVSLSEEDTATYKKCLEELK 601
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 46/120 (38%), Gaps = 3/120 (3%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
K + ++ A TG GKT ++ H L + K + V + Q +
Sbjct 213 KVGDILVNASTGSGKTLAYAMLLIHILSR-RTVNKLRAVILVPTKLLVHQVYDTVQALAK 271
Query 316 RHGYRVTGISGATA-ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V T+ + + + D++I+TP LV++L T SL ++ DE
Sbjct 272 GSSVVVAVSKMDTSLKEESAKLKAQEPDVLIITPGRLVDHLNMQTF-SLKNLKFLVLDEA 330
>sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DRS1 PE=3 SV=1
Length=686
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 46/122 (38%), Gaps = 1/122 (1%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
A+ GK+ + A TG GKT L+ L K + + Q V K
Sbjct 230 ALLGKDIVASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKL 289
Query 314 FERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ G + +Q+ DI+I TP L+++++ S+ ++I D
Sbjct 290 GQFVSNLNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLIDHIRNSPSFSVEDVQVLIID 349
Query 373 EC 374
E
Sbjct 350 EA 351
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 63/420 (15%), Positives = 131/420 (31%), Gaps = 41/420 (10%)
Query 410 ASVGVGDAKNTDEALDYICKLCASLDA----SVIATVKHNLEELEQVVYKPQKFFRKVES 465
AS G K + I +L ++ ++I T EL V+ + + S
Sbjct 238 ASAQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPT---RELAIQVHDVGRKLGQFVS 294
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
++ L + + L R + + R + ++
Sbjct 295 NLNFGMAVGGLSLKQQEQQLKTR----PDIVIATPGRLIDHIRNSPSFSVEDVQVLIIDE 350
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
D+ E + L S + K ++ + L N + +
Sbjct 351 ADRMLEEGFQEELTEILSLIPKQKRQTLLFSATMNNTKIQDLVQLSLNKPIKVSIDPPRT 410
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ + E++ + K E+L + E T++F +T+ L+
Sbjct 411 VASKLEQQFVRIR-----------KREELKPAVLYLLLKKLEGRTVVFTRTKVEAHKLRI 459
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ + +T + + AFK + N+LI T +A G+D
Sbjct 460 ILGLLGLTV------------AELHGALTQEQRLANVKAFKNN--VNVLICTDLAARGLD 505
Query 706 IAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
I VI Y+ GR RA + + ++ N+ K + +S
Sbjct 506 IR-IEYVINYDMPKTYEIYTHRVGRTARAGRKGTSISFVGESMQDR---NIVKNAIQFNS 561
Query 765 ILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVR 824
+ D + I+ +E I + E+ K + ++ K + L Y +++
Sbjct 562 RSVARKIDWDEVEKIQTKIKLNEGAIEEVIEEEKQAREIMRAEMQLNKAENLMKYEKEIK 621
>sp|Q54VF1|DDX56_DICDI Probable ATP-dependent RNA helicase ddx56
OS=Dictyostelium discoideum OX=44689 GN=ddx56 PE=3 SV=1
Length=685
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/208 (19%), Positives = 76/208 (37%), Gaps = 31/208 (15%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQIPVYEQQKSVF 310
+++GK+ + A TG GKT + + K+ + K V + EQ
Sbjct 57 SLQGKDILAKARTGSGKTAAYSIPIIQKVLMAKEKSNIKGVKAVVLVPTRELCEQ----V 112
Query 311 SKYFERHGYRVTGIS-----GATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLS 364
+F + Y + G + ++ + D+I+ TP LV +L+ TI S
Sbjct 113 KNHFNQVSYYCQQLVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENKTIQLQS 172
Query 365 IFTLMIFDECHNTSKQHPYNMIMFNYLDQK----LGGSSGPLPQVIGLTASVGVGDAKNT 420
+++ DE ++ NY Q + + Q ++A++ K
Sbjct 173 TLDILVIDEA----------DLVLNYGHQNDINIIKSFLPKVCQCFLMSATL----TKEV 218
Query 421 DEALDYICKLCASLDASVIATVKHNLEE 448
+E + A L ++ NL E
Sbjct 219 EELKKLVLHTPAVLKLEEDKAIQTNLSE 246
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 9/40 (23%), Positives = 16/40 (40%), Gaps = 1/40 (3%)
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 740
GID ++V+ +++ + I GR R L
Sbjct 429 RGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIAL 468
>sp|Q4QFY1|JBP2_LEIMA Bifunctional helicase and thymine dioxygenase
JBP2 OS=Leishmania major OX=5664 GN=JBP2 PE=3 SV=2
Length=1098
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 86/543 (16%), Positives = 172/543 (32%), Gaps = 87/543 (16%)
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLIC 278
+S P T L S P QL + K ++ G GKT V+L +C
Sbjct 525 GADSSLPPLFVPTRLASHLAP--VQLAALGFIVERTEKQSGCVVAMTMGLGKTLVALTLC 582
Query 279 EHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQI 337
L PQ ++ P+ + HG + ++ EQ
Sbjct 583 FSQLYLAPQAD---ILILTP-KPIIS-HWVDEKNKWGMHGLHFPHFVASDGLNSLEFEQQ 637
Query 338 V------------ENNDIIILTPQILVNNLKKGTIPSLSIFT--LMIFDECHN--TSKQH 381
+ ++ I ++ + L G + FT +MI DE H
Sbjct 638 LLEYERQKNNEKPKSGHIFVINGEYLA-----GFLRRFKRFTPLVMIVDEGHRVAAKGNK 692
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
+ LD+ +++ L+ + DA + ++ K + +
Sbjct 693 -----LTESLDRLRCNL-----RIV-LSGTPLQNDASELYRLVGWVNKGVSRVL------ 735
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
P K F+++ + I+ + +A+ +D +
Sbjct 736 --------------PPKRFQELANDINQFVEGDDGAFYNAV--VAQEYIQDWMRGFVFRE 779
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
E +++ + + + +K + T H + A +
Sbjct 780 MENDLPPLHDYLLICGSSDVQREYEEKLGLTETAMTALKATEHRPHHLSTHPACYLAFIS 839
Query 562 DALDYLK-----DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP-SNENPKLEDLC 615
D+ + SN ++E+ T R E+ +Q +E+ D + + K+ L
Sbjct 840 DSYQSMVSGWTVRALSNTSRQRVSQLEEIDTMRLEQYVQLVENEQLDAFIDLSGKMRVLV 899
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
I+ I+F D + + L+ T RG+ +Q+
Sbjct 900 DIVLRVQARKE--KLIVFSLYVGSQDLIHRTLTA------LRVCTFTVRGRDSQD----- 946
Query 676 PAQKCILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
++ + F + D +L+ +T +A G+D N V+L++ N Q R R
Sbjct 947 -RRRRAMQEFSENKDLIVLVLSTKIAAYGLDFTAANHVVLFDSWWNPQVDAQAIARAYRR 1005
Query 735 GSK 737
+
Sbjct 1006 NQR 1008
>sp|Q6H601|RH22_ORYSJ DEAD-box ATP-dependent RNA helicase 22 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os09g0383400 PE=2
SV=2
Length=577
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 79/211 (37%), Gaps = 22/211 (10%)
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP--ETITILFVKTRALVDA 642
R +L+ + + L+ + + L+ E H T++F T ++
Sbjct 382 AYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNRTMVFTNTVDAANS 441
Query 643 LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
+ + ++ G + +L + L +F+ +G +L+ T A
Sbjct 442 VSDILQR------------VGVPCILYHRDSSLEERAKNLQSFRENGG--VLVCTDAAAR 487
Query 703 GIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
G+D+ + VI E+ + + GR AR + ++TS ++ + + +
Sbjct 488 GLDVPNVSHVIQAEFAACAVDFLHRVGR-TARAGQSGIVTSLYTEANRDLV-----RAVR 541
Query 763 DSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
+ Q ++A R++ + ++ + S
Sbjct 542 QAEELAQPVEKAFSRKRSFRNKLKKQALHKS 572
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 44/138 (32%), Gaps = 21/138 (15%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL------------KKFPQGQKGKVVFFANQIPV 302
+ + I+ A TG GKT L+ L + G + + +
Sbjct 117 LTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVML 176
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL------K 356
EQ + + + G + + DI++ TP L+N L K
Sbjct 177 CEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTV---RPDILVATPAALLNYLFDYDPEK 233
Query 357 KGTIPSLSIFTLMIFDEC 374
+ L ++FDE
Sbjct 234 RRRERFLRNVKFIVFDEA 251
>sp|Q6BV58|MAK5_DEBHA ATP-dependent RNA helicase MAK5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=MAK5 PE=3 SV=1
Length=790
Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/119 (23%), Positives = 40/119 (34%), Gaps = 18/119 (15%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F + V L P L+ LK + M + L+ FK
Sbjct 495 GSTLVFANSIDSVKRLA------PFLNNLKVPTFSIHSS------MIQKQRLRTLERFKE 542
Query 688 SGDHN---ILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFL 740
+ N +LIA+ VA G+DI + V Y + I GR G
Sbjct 543 ASSKNSTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTGRAGKEGVSIMF 601
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/134 (24%), Positives = 56/134 (42%), Gaps = 13/134 (10%)
Query 254 AMKGKNTIICAPTGCGKTFVS-LLICEHHLKKFPQGQKGKVV-------FFANQIPVYEQ 305
A++GK+ I A TG GKT + I E HL+K + + K V FA + Q
Sbjct 233 AIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTGIIFAPTRELAHQ 292
Query 306 ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTI 360
+ +K+ + + I+G + + I++ TP + L+K +
Sbjct 293 VVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLELLQKDMALV 352
Query 361 PSLSIFTLMIFDEC 374
LS +++ DE
Sbjct 353 QRLSCTDIVVLDEA 366
>sp|Q5UQD1|YR458_MIMIV Putative ATP-dependent RNA helicase R458
OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R458
PE=3 SV=1
Length=524
Score = 71.7 bits (174), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 19/256 (7%)
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
+ +++ + + K M +D+ + I + + + N A + A +
Sbjct 263 KAICVDEFDNIVASKTKQRSSTVMNTEDQMAEIIQKI-ESEAPKNSENGAQRVFFSATVS 321
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
+ + + + E L + L+ + SN K E I+ +
Sbjct 322 PYAIKIANSYFRKYSPIIGEPFIVLLDSEDYTLEGIRQYYVQCSNYFEKKE----IILDL 377
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
I+F + +K ++ + + G + +K I
Sbjct 378 LKQCRIAQAIIFANRIETANEIKKLLDEQE--VPISSAVFHG--------DLPAVTRKNI 427
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKC 738
F +LI+T + G+D+ N+V ++ I + GR +G
Sbjct 428 HKDF-VENKIRLLISTDLTSRGLDVQGINVVFNFDMPDTLETYIHRVGRSGRYGRKGVSI 486
Query 739 FLLTSNAGVIEKEQIN 754
L+ N E E++
Sbjct 487 SLILVNQNKNEMEKVE 502
>sp|Q9FLB0|RH18_ARATH DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis
thaliana OX=3702 GN=RH18 PE=2 SV=1
Length=593
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/307 (18%), Positives = 95/307 (31%), Gaps = 21/307 (7%)
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS 497
+I+ + ++ V V S + + + A + E + LS
Sbjct 95 IISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRLS 154
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
I R I+ + +A + +M + + + I L E
Sbjct 155 DIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEE 214
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
+ ++ VRA E Q LT LE + + ++ +L DL
Sbjct 215 LAKAGLRNPVR---VEVRAKSKSESSQQLTNSKTPSGLHLEYMECEADKKSSQLVDLL-- 269
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
N + I+F T A VD + P L + + M A
Sbjct 270 -----IKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSI--------SLIPIHGDMKQNA 316
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-ARG 735
+ L +F L+ T VA G+DI + V+ Y+ + GR R R
Sbjct 317 RDKALASF-TKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNHRAGRTARLGRQ 375
Query 736 SKCFLLT 742
+ +
Sbjct 376 GRAIVFL 382
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/117 (20%), Positives = 46/117 (39%), Gaps = 10/117 (9%)
Query 266 TGCGKTFVSLLICEHHLKKF--PQGQKGKV--VFFANQIPVYEQQKSV----FSKYFERH 317
TG GKT ++ L++ + +V V + + Q +V S +
Sbjct 62 TGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVN 121
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G A+ +E+ E +++I TP L + +++ I ++I DE
Sbjct 122 SVLLVGGREVKADMKIIEE--EGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEA 176
>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus
OX=9913 GN=DDX1 PE=2 SV=1
Length=740
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/251 (19%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+Q Y +I + K + +C A + + +K D
Sbjct 377 SQGYSDFINRIHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ E ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 85/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLSQGYSDFINRIHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+ D K + A+L + + + E++++ P K E
Sbjct 394 I--------TSDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICK---DLENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K + + N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDEVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|P0CR04|ROK1_CRYNJ ATP-dependent RNA helicase ROK1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=ROK1 PE=3 SV=1
Length=620
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (33%), Gaps = 19/170 (11%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ + ++ +E+ KL L ++ P ++FV++ + L +
Sbjct 389 DSAVTTVDQSLLYTGSESGKLLALRNLISSGQLPYPS---LIFVQSIDRAEELYKTL--- 442
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+L G + G + + F+ G +L+ T V G+D
Sbjct 443 ---------VLDGIKVDAVHGGKAKTKRDEAIKDFRV-GAVWMLVVTEVLARGMDFRGVK 492
Query 711 LVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+VI Y++ I I GR G G + N+ +
Sbjct 493 VVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLR 542
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 54/156 (35%), Gaps = 17/156 (11%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSE-------VSDTNLYSPFKPR 244
I + + + + P N +S +E +S N++S +
Sbjct 91 IPAPPPQKITLTGAEPLPKSLHTNLPSLVNHESHSLTSAEGGPLLSALSRANIHSLWGV- 149
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVVFFA 297
Q + ++ ++T+ APTG GKT +L LK +G+ + +
Sbjct 150 --QCAVGGCLLEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVV 207
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ Q + V +R ++ AT + V
Sbjct 208 PTHDLAVQIQGVIKAVTMGRHWRSMVLTKATEKAVW 243
>sp|P0CR05|ROK1_CRYNB ATP-dependent RNA helicase ROK1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=ROK1 PE=3 SV=1
Length=620
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 56/170 (33%), Gaps = 19/170 (11%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ + ++ +E+ KL L ++ P ++FV++ + L +
Sbjct 389 DSAVTTVDQSLLYTGSESGKLLALRNLISSGQLPYPS---LIFVQSIDRAEELYKTL--- 442
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+L G + G + + F+ G +L+ T V G+D
Sbjct 443 ---------VLDGIKVDAVHGGKAKTKRDEAIKDFRV-GAVWMLVVTEVLARGMDFRGVK 492
Query 711 LVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+VI Y++ I I GR G G + N+ +
Sbjct 493 VVINYDFPQTVPSYIHRIGRTGRAGRPGKAITFFNIEDGPYLRTIANVLR 542
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 54/156 (35%), Gaps = 17/156 (11%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSE-------VSDTNLYSPFKPR 244
I + + + + P N +S +E +S N++S +
Sbjct 91 IPAPPPQKITLTGSEPLPKSLHTNLPSLVNHESHSLTSAEGGPLLSALSRANIHSLWGV- 149
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICE-------HHLKKFPQGQKGKVVFFA 297
Q + ++ ++T+ APTG GKT +L LK +G+ + +
Sbjct 150 --QCAVGGCLLEDRDTLCVAPTGSGKTLSYVLPTIVKLREPARKLKGTEEGKGVRALVVV 207
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ Q + V +R ++ AT + V
Sbjct 208 PTHDLAVQIQGVIKAVTMGRHWRSMVLTKATEKAVW 243
>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus
norvegicus OX=10116 GN=Ddx1 PE=1 SV=1
Length=740
Score = 72.1 bits (175), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+Q Y +I + K + +C A + + +K D
Sbjct 377 SQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ + ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLSQGYSDFINRMHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+ D K + A+L + + + E++++ P K E
Sbjct 394 I--------TSDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKD---LENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K+ +++ N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|Q7XMK8|RH6_ORYSJ DEAD-box ATP-dependent RNA helicase 6 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os04g0533000 PE=2 SV=1
Length=498
Score = 71.7 bits (174), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/153 (18%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 349 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKML 396
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ + + GR
Sbjct 397 QDHRNRVFHDFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKSAETYLHRVGRSGRF 455
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSIL 766
G L + + +++ N+Y+ E+ + I
Sbjct 456 G---HLGLAVNLITYEDRFNLYRIEQELGTEIK 485
Score = 66.7 bits (161), Expect = 5e-10, Method: Composition-based stats.
Identities = 69/404 (17%), Positives = 137/404 (34%), Gaps = 39/404 (10%)
Query 162 SDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQN 221
S + W + ++A E + V GI D ++D + +++ Y+ +
Sbjct 63 SQHQQWLRRNQIAAEAAGASEQKAPPVADGI-DSSSQDWKAQLKLPPQDTRYRTEDVTAT 121
Query 222 LSENSCPPSEVSDTNLYSPFK-----PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL 276
N + L ++ P Q E A+ G + + A G GKT +
Sbjct 122 KG-NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKT--AAF 178
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
K +VV + Q V + + +V +G T+ + +
Sbjct 179 CIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVR 238
Query 337 IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG 396
+ + +++ TP +++ KKG L ++++ DE + ++ +
Sbjct 239 LYQPVHLLVGTPGRILDLTKKGVCV-LKNCSMLVMDEA---------DKLLSPEFQPSIQ 288
Query 397 GSSGPLP---QVIGLTASVGVGDAKNTDEAL--DYICKLCASLDASVIATVKHNLEELEQ 451
LP Q++ +A+ V + D+ L Y+ L L I +EE Q
Sbjct 289 ELIRYLPSNRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEE-RQ 347
Query 452 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ 511
V+ F K++ S F + + E LAK+I + + I + +
Sbjct 348 KVHCLNTLFSKLQINQSIIFCNSVNR----VELLAKKITELGYSCFYIHAKMLQDHRNRV 403
Query 512 WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
+ AC +C LF ++ N +
Sbjct 404 FHDFRNGACRNL----------VCTDLFTRGIDIQAVNVVINFD 437
>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os10g0503700 PE=2
SV=2
Length=521
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 54/155 (35%), Gaps = 17/155 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 372 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE------------LGYSCFYIHAKML 419
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ T + GIDI N+VI +++ + GR
Sbjct 420 QDHRNRVFHDFR-NGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRF 478
Query 735 GSKCFLLTSNAGVIEKEQINMYK-EKMMNDSILRL 768
G L + + +++ N+Y+ E+ + I +
Sbjct 479 G---HLGLAVNLITYEDRFNLYRIEQELGTEIKTI 510
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/319 (18%), Positives = 111/319 (35%), Gaps = 32/319 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ G + + A G GKT + K P+ +VV
Sbjct 169 RPSPIQEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDPEKNAIQVVILVPTRE 226
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + + +V +G T+ + ++ + +++ TP +++ +KG
Sbjct 227 LALQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICV 286
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAK 418
L ++++ DE + ++ + LP Q++ +A+ V
Sbjct 287 -LKDCSMLVMDEA---------DKLLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKD 336
Query 419 NTDEAL--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
++ L Y+ L L I +EE Q V+ F K++ S F +
Sbjct 337 FKEKYLPRPYVINLMDELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSVN 395
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+ E LAK+I + + I + + + AC +C
Sbjct 396 R----VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL----------VCT 441
Query 537 ALFLYTSHLRKYNDALIIS 555
LF ++ N +
Sbjct 442 DLFTRGIDIQAVNVVINFD 460
>sp|Q8SR01|DBP4_ENCCU ATP-dependent RNA helicase DBP4 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=DBP4 PE=3 SV=2
Length=449
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/198 (19%), Positives = 65/198 (33%), Gaps = 16/198 (8%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L NPE I+F T V + KL + L+G GM+
Sbjct 229 INYLHTFIGSNPEVKGIVFFSTCKEVK-FHCLLFERLKLRN-RIFCLSG--------GMS 278
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR- 732
+ + F + IL T + G+D + ++VI Y+ NV + GR R
Sbjct 279 QKQRIDVFKRF-VKEKNGILFCTDLGSRGLDFPKVDVVIQYDCPCNVETYVHRVGRTARN 337
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
RG L + + K + + + E + + I+ ++
Sbjct 338 SERGESYVYLVHGEEKLLTDIQK--KGWIKKQEGMEDKGISEEITEGPGVQIRCINNMVK 395
Query 792 DSQEKPKPVPDKENKKLL 809
K + + K L+
Sbjct 396 RLVRSSKELNEYCRKYLV 413
Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYE 304
Q ++ A++G + I + TG GKT L+ L + G + +
Sbjct 28 QQKVIPMALEGHDIIGSSQTGTGKTLAFLVPTLQRLVSLGWGGGDGLGCLVITPTRELAL 87
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND--IIILTPQILVNNLKKGTIPS 362
Q V S+ + I G +++++ N I++ TP L+ +L++ S
Sbjct 88 QIFDVLSRIAKYTVLSTGLIMGGL---EAEDELLKVNQMNILVCTPGRLLQHLQENPYLS 144
Query 363 LSIFTLMIFDEC 374
+ ++I DE
Sbjct 145 TANVQILILDEA 156
>sp|Q0E2Q3|IF4A2_ORYSJ Putative eukaryotic initiation factor 4A-2
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300
PE=3 SV=2
Length=416
Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 30/232 (13%)
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+F + + DE R K + +AL+ + + +
Sbjct 189 IRMFVLDEADEVLRGFKDQIHGIIQFLPTKTQFGFFSASMSHEALEMCRKYMNKPVEIIV 248
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
E+ ++ + E+ KL+ LC + + T +I+FV TR
Sbjct 249 PRDEELEGIN-------VKQFYVNVEKEDCKLDKLCGL----FDTMEITRSIIFVNTRHH 297
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+L I G G + + G+ A+ + F+ SG ILI T +
Sbjct 298 AKSLTEKIRGK------------GYTVSAIHGGIHQRARDKAVQEFQ-SGSSRILITTDL 344
Query 700 ADEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLTSNAGVI 748
GID+ + I Y+ + +Q+ G+ +G +TS +
Sbjct 345 --RGIDVLRAPAAIFYDLPTQPVCYLRHVQS-GQHGRKGVAISFITSTDERV 393
>sp|Q2UQI6|DRS1_ASPOR ATP-dependent RNA helicase drs1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=drs1
PE=3 SV=2
Length=820
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/200 (18%), Positives = 70/200 (35%), Gaps = 14/200 (7%)
Query 189 EKGIKDVETEDLE---DKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF---- 241
+ D + D+E D E + + F+ + + S + NL P
Sbjct 258 DDVASDNDGSDIESEVDAEEEAKRKAFFAPEEQTSEQSAAELSKKSFQEFNLSRPILRGL 317
Query 242 ------KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVV 294
P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 318 AAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILERLLFRPRKVPTSRVA 377
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ Q +V +K + G + + + D+II TP +++
Sbjct 378 ILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILKKRPDVIIATPGRFIDH 437
Query 355 LKKGTIPSLSIFTLMIFDEC 374
++ ++ +++ DE
Sbjct 438 MRNSASFTVDTLEILVLDEA 457
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 98/297 (33%), Gaps = 36/297 (12%)
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+V D+ E L + + K ++ S A M D++D L N
Sbjct 451 ILVLDEADRMLEDGFADELNEILTTIPKSRQTMLFS--ATMTDSVDKLIRVGLNRPVRLM 508
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
+ +++ + ++ L P E+ +L L + +E Y I+F
Sbjct 509 VDSKKNTSMNLIQEFVRLR-----PGREDKRLGYLLHLCKEVYT----GRVIVF------ 553
Query 640 VDALKNWIEGNPKLSFLKPGI-LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ ++ L G + M+ + ++ F+ G + L+AT
Sbjct 554 -------FRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFR-EGKVSFLLATD 605
Query 699 VADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINM 755
+A G+DI VI YE + + + R G C + + K +
Sbjct 606 LAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 665
Query 756 YK-------EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKEN 805
K ++++ ++ E+I + EK + + V EN
Sbjct 666 SKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQVTRSEN 722
>sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6
OS=Pongo abelii OX=9601 GN=DDX6 PE=2 SV=1
Length=483
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/170 (16%), Positives = 58/170 (34%), Gaps = 20/170 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 322 VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQ------------LGYSCFYIHAKMR 369
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRG 731
+ + F+ +G L+ T + GIDI N+VI +++ + I GR
Sbjct 370 QEHRNRVFHDFR-NGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRF 428
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
G L+T + ++ + +E++ + D++++ +
Sbjct 429 GHLGLAINLITYD----DRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYH 474
Score = 56.7 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 47/264 (18%), Positives = 98/264 (37%), Gaps = 17/264 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GK+ L+ L + + +
Sbjct 118 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--KKDNIQAMVIVPTRE 175
Query 302 VYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + + + G +V +G T + ++ + ++I TP +++ +KKG +
Sbjct 176 LALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKG-V 234
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ +++ DE Q + IM + + + Q++ +A+ + K
Sbjct 235 AKVDHVQMIVLDEADKLLSQD-FVQIMEDII-----LTLPKNRQILLYSATFPLSVQKFM 288
Query 421 DEALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ L Y L L + + E Q V+ F +++ S F
Sbjct 289 NSHLQKPYEINLMEELTLKGVTQYYAYVTE-RQKVHCLNTLFSRLQINQSIIFCNS---- 343
Query 479 MRDTESLAKRICKDLENLSQIQNR 502
+ E LAK+I + + I +
Sbjct 344 SQRVELLAKKISQLGYSCFYIHAK 367
>sp|Q0CMB0|ROK1_ASPTN ATP-dependent RNA helicase rok1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=rok1
PE=3 SV=2
Length=749
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 15/165 (9%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT----ILFVKTRALVDAL-KN 645
+ + ++ + E KL L +L + ++F +T AL
Sbjct 475 DSAIPNIQHKLVYAATEQGKLLGLRQLLHPTARTATDVHLRPPFLIFTQTIPRAVALHSE 534
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ P + I ++ + I+ F+ G+ IL+ T + G+D
Sbjct 535 LLYDIPPEAGGSSRIAVLHS------ELSDSQRSEIMKGFR-KGEIWILVTTDLLARGVD 587
Query 706 IAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAGV 747
N V+ Y+ + + + GR G + +
Sbjct 588 FRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGVAVTYYTKEDI 632
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 52/158 (33%), Gaps = 42/158 (27%)
Query 259 NTIICAPTGCGKTF---VSLL-ICEHHLKKFPQGQKGKVVFFANQIPVYEQ--------- 305
+ ++ APTG GKT + ++ H + P + V A + Q
Sbjct 249 DLLVVAPTGSGKTLSFLIPVINKIVRHHHEQPDERGIFAVVVAPTKELASQIVNEGRKLV 308
Query 306 QKSVFSKYFERHGYRVTGISGA---------------TAENVPVEQI-----------VE 339
Q + + G +V G + + ++ V
Sbjct 309 QGTGVKITLMKKGMQVVERDGDGDSDEKDVLDEDSADSGSDSEDDEQTTDKKTKGKAPVT 368
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTL---MIFDEC 374
+DI++ TP +LVN L L+ L ++ DE
Sbjct 369 KSDILVTTPLLLVNALSANRTKPLAALPLVRNIVLDEA 406
>sp|P0C2N7|DRS1_CHAGB ATP-dependent RNA helicase DRS1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DRS1 PE=3 SV=1
Length=795
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/173 (18%), Positives = 63/173 (36%), Gaps = 10/173 (6%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPFK---------PRNYQLELALPAMKGKNTII 262
F+ E +N+ + S + + P Q + A+ GK+ +
Sbjct 259 FFAAPEETENVGKKGGLSSFQGMSLSRPILRGLTSVGFTKPTPIQAKTIPIALMGKDVVG 318
Query 263 CAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
A TG GKT ++ L P+ +VV + Q SV +K +
Sbjct 319 GAVTGSGKTAAFVVPILERLLYRPKKVPTTRVVVLTPTRELAIQCHSVATKLASHTDIKF 378
Query 322 TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
G + V ++ D++I TP +++++ ++ +++ DE
Sbjct 379 CLAVGGLSLKVQEGELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEA 431
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 11/133 (8%)
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCF 739
AF+ G N L+AT +A G+DI + VI YE ++ + G R G
Sbjct 559 SAFR-DGKVNYLLATDLASRGLDIKGIDTVINYEAPQSLEIYVHRVGRTARAGRSGVAIT 617
Query 740 LLTSNAGVIEKEQINMYK-------EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRD 792
L + K + K ++++ + ++I I EK +
Sbjct 618 LAAEPDRKVVKAAVRAGKAQGAKIISRVIDAADADKWQDQIDEMDDEIDEILQEEKEEKQ 677
Query 793 SQEKPKPVPDKEN 805
+ V EN
Sbjct 678 LAQIEMQVKKGEN 690
>sp|A5DUB2|MAK5_LODEL ATP-dependent RNA helicase MAK5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=MAK5 PE=3 SV=1
Length=855
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/330 (16%), Positives = 107/330 (32%), Gaps = 35/330 (11%)
Query 452 VVYKPQKFFRKVESR---ISDKFKYIIAQLMRDTESLAKRICKDLENLSQI--QNREFGT 506
+V P + ++ + I L L ++ E + ++ +NR
Sbjct 356 IVATPGRMLELCQNDQELVKRLSMTDIIVLDEADRLLQDGHFEEFEKILELFNKNRPKND 415
Query 507 QKYE-QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+ E +W V A + K ++ + K++ L K + + ++ + + L
Sbjct 416 KSIEWKWQTLVFSATFSRDLFGKLDKQQKQKSVKGNGKALNKADSGNSLVQNDEIIELLR 475
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
F + ++ ++ + E L E + RD + L
Sbjct 476 EKLRFKDKAPSLVDANPKEIVSGQITEALVECGPLERDLYLY-------------YFLLM 522
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ T++F + V L P L+ L M + L+ F
Sbjct 523 YKGSTLVFANSIDSVKRLV------PLLNNLNIPAFAIHSS------MIQKQRLRSLERF 570
Query 686 KASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
K + + N +L+A+ VA G+DI + V Y + I GR RA ++
Sbjct 571 KDASEKNQTAVLVASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVM 630
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
+ + K N + + Q
Sbjct 631 FCSPQEASGPLRKLRKLVASNAANNKNQKI 660
Score = 55.9 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (37%), Gaps = 15/136 (11%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----------VFFANQIPVY 303
A++GK+ I A TG GKT + + K KV + FA +
Sbjct 253 ALEGKDVIGKATTGSGKTLAYGIPILEKYIQSLDTVKRKVREKVVNHPTGIIFAPTRELA 312
Query 304 EQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--G 358
Q + ++Y + ++G + + II+ TP ++ +
Sbjct 313 HQVVDHLNKIAQYSPLSTKGIVSVTGGLSIQKQERLLSFGPGIIVATPGRMLELCQNDQE 372
Query 359 TIPSLSIFTLMIFDEC 374
+ LS+ +++ DE
Sbjct 373 LVKRLSMTDIIVLDEA 388
>sp|A3LNR6|HAS1_PICST ATP-dependent RNA helicase HAS1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=HAS1 PE=3 SV=2
Length=567
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/240 (19%), Positives = 85/240 (35%), Gaps = 16/240 (7%)
Query 141 QICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDL 200
+ ++ EKLVE L E + E K S+L + D
Sbjct 30 EFSDSEDDEVDQEKLVEELDEDFDEVANMLGADVTDPEEKKQSKL-------ERKRKRDE 82
Query 201 EDKMETSDIQIFYQEDPECQNLSENSC-PPSEVSDTNLYSPFKPRNYQLELALPAMKGKN 259
E E + ++ ED + E++ + + Q + P + GK+
Sbjct 83 EATAEYTKPEVVDNEDDAQNDKFEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKD 142
Query 260 TIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
+ A TG GKT + + + LK P+ G +V + + Q V +
Sbjct 143 VLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIV-VSPTRELALQIFGVARELMAH 201
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDEC 374
H + G E++ + +++I TP L+++L+ G + ++ DE
Sbjct 202 HTQTFGIVIGGANRRQEAEKLAKGVNLLIATPGRLLDHLQNTQGFVFK--NLKALVIDEA 259
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/305 (18%), Positives = 95/305 (31%), Gaps = 56/305 (18%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + + F + R
Sbjct 158 LIPAIELLYSLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIVIGGANRR- 216
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L+I+ R+ D L + F F N++A DE ++ L FEE+
Sbjct 217 -----QEAEKLAKGVN-LLIATPGRLLDHLQNTQGFVFKNLKALVIDEADRILEIGFEEE 270
Query 594 LQELESVSRDPSNENP--------KLEDLCFILQE----EYHLNPETITILFVKTRALVD 641
++++ + ++ K+EDL I ++ PET + D
Sbjct 271 MKQIIKILPKEERQSMLFSATQTTKVEDLARISLRPGPLYINVVPETAA-------STAD 323
Query 642 ALKN-------------WIEGNPKLSFLKPGILTGRGKTNQNTGM--------------T 674
L+ K S K + + + G
Sbjct 324 GLEQGYVVCDSDKRFLLLFSFLKKYSKKKIIVFLSSCNSVKYFGELLNYIDLPVLDLHGK 383
Query 675 LPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
QK F+ + L+ T VA G+DI + +I ++ + I GR R
Sbjct 384 QKQQKRTNTFFEFCNAKQGTLVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTAR 443
Query 733 ARGSK 737
K
Sbjct 444 GSNGK 448
>sp|Q757I6|MAK5_EREGS ATP-dependent RNA helicase MAK5 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=MAK5 PE=3 SV=1
Length=752
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/274 (16%), Positives = 82/274 (30%), Gaps = 24/274 (9%)
Query 477 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
+L+ ++L R K + +R +E++ ++ + + K
Sbjct 319 ELLEKDQTLIDRFAKVDTLVLDEADRLLQDGHFEEFERILKHLSR--ARKFTNGKKHGWK 376
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
+ + Y + L + +MK A ++ V +I + E
Sbjct 377 TMIYSATFSLDYFNKLSNTSWKKMKKAPS--ENEMEEVLKHLMTKIPFRGKPLIIDTNPE 434
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
+ S+ + L + + T++F V L ++ L
Sbjct 435 QKVASQIKESLIECLPTERDLYVYYFVTLYPGTTLVFCNAIDSVKKLNAYLHN------L 488
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN-------ILIATSVADEGIDIAQC 709
K M + L+ F+ N +LIA+ VA G+DI
Sbjct 489 KISAFQIHSS------MLQKNRLKSLEKFQEQAKKNQALNKPTVLIASDVAARGLDIPGI 542
Query 710 NLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
VI Y + I GR RA +
Sbjct 543 QHVIHYHLPRSADVYIHRSGRTARAENEGVAVTI 576
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 22/186 (12%)
Query 208 DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF----------KPRNYQLELALPAMKG 257
+IF ++ + +E PS + L + P QL+ A+ G
Sbjct 160 QSEIFNKDIGLDE--AEAPELPSWTNTMKLSATVLQGLSRLGFSNPTEIQLQSIPKALDG 217
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY---- 313
+ + A TG GKT + + + + + F + Q +
Sbjct 218 HDIMGKASTGSGKTLAYGIPILEGIIRDDTDSRPIGLIFTPTRELAHQVTDHLREVGALL 277
Query 314 FERHGYRVTGISGATAENVPVEQIVENN---DIIILTPQILVNNLKKG--TIPSLSIFTL 368
+R+ Y + ++G + E++++ +++ TP + L+K I +
Sbjct 278 VKRNPYSIMCLTGGLSIQKQ-ERLLKYKGSARVVVATPGRFLELLEKDQTLIDRFAKVDT 336
Query 369 MIFDEC 374
++ DE
Sbjct 337 LVLDEA 342
>sp|Q9FNM7|RH26_ARATH DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis
thaliana OX=3702 GN=RH26 PE=1 SV=2
Length=850
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/348 (16%), Positives = 111/348 (32%), Gaps = 46/348 (13%)
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
LP + + S + + +C + + + L +
Sbjct 438 LPAIEAVIKSPPASRDSRQPPII--VLVVCPT--RELASQAAAEANTLLKYHPSIGVQVV 493
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACM 521
+++ + + + + + R+ +EN S R G + ++ + +A
Sbjct 494 IGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVK-----VLVLDEADH 548
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
+ M + + RI A+ A + E ++ F N G E
Sbjct 549 LLDMGFRRDIERIIAAVPKQRQTFLFS--ATVPEEVRQICHVALKRDHEFINCVQEGSGE 606
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT----R 637
Q +TQ + ++ + L +L+E N + I+F T R
Sbjct 607 THQKVTQMYMI------------ASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTR 654
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
+ D L ++ KP + + D F+ S IL+ +
Sbjct 655 LVADLLSQLSLNVREIHSRKP----------------QSYRTRVSDEFRKSKAI-ILVTS 697
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTS 743
V+ G+D +LV+ + + I GR GR + + LL +
Sbjct 698 DVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLA 745
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query 255 MKGKNTIICAPTGCGKTFVSLLI--CEHHLKKFPQGQKGK-----VVFFANQIPVYEQQK 307
++GK+ + A TG GKT V+ L+ E +K P + + V+ + Q
Sbjct 417 LQGKDVLAKAKTGTGKT-VAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAA 475
Query 308 SVFSKYFERH-GYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKK--GTIPSL 363
+ + + H V + G T ++ N I++ TP L ++++ G L
Sbjct 476 AEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRL 535
Query 364 SIFTLMIFDECHN 376
+++ DE +
Sbjct 536 MGVKVLVLDEADH 548
>sp|Q6CIR0|DBP10_KLULA ATP-dependent RNA helicase DBP10 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP10 PE=3 SV=1
Length=973
Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/132 (26%), Positives = 50/132 (38%), Gaps = 14/132 (11%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + E TI+FV TR V+ + ++ G L + + A
Sbjct 409 LPNANEMPSEKATIVFVPTRHHVEYVTQLLKN--------CGYLV----SYIYGALNQHA 456
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
+K L F+A G +IL+ T VA G+DI VI Y G+ I GR RA
Sbjct 457 RKQQLYNFRA-GLTSILVVTDVAARGVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNR 515
Query 737 KCFLLTSNAGVI 748
+ +
Sbjct 516 GWAFSIVSENEL 527
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 49/120 (41%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ ++ + A TG GKT +L LK + V + + Q VF ++
Sbjct 161 LQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFS 220
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R ++G + ++ N D++I TP ++ LK L ++FDE
Sbjct 221 KGSDLRSILLTGGDSLEDQFGMMMGNPDVVIATPGRFLH-LKVEMNLDLKSVEYVVFDEA 279
>sp|P34640|DDX55_CAEEL Probable ATP-dependent RNA helicase DDX55
homolog OS=Caenorhabditis elegans OX=6239 GN=ZK512.2 PE=3
SV=2
Length=578
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/407 (13%), Positives = 138/407 (34%), Gaps = 20/407 (5%)
Query 433 SLDASVIATVKHNLEELEQVVYKP------QKFFRKVESRISDKFKYIIAQLMRDTESLA 486
+L V+ + + + L V+ + + + I + + +Q++ + A
Sbjct 45 NLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFA 104
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+++ +E ++ Q + + ++ V + + + +
Sbjct 105 EKLNLTVETVTGGQKVDKNIKMFKNKNVNIL--VATPGRLFQIIQHEKTLIARKMRTLQL 162
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ--DLTQRFEEKLQELESVSRDP 604
D + +D + + R G Q + L+ + V
Sbjct 163 LVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQ 222
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP--GILT 662
+ L E ++ + F++ R L + N F K L
Sbjct 223 ERNSAAPSTLKNYYVECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLG 282
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
R + + P + + AF S + ++I+T V GIDI+ + VI ++ +
Sbjct 283 KRPLFAVHGKCSNPHRASQIKAFSDS-TNGVMISTDVMARGIDISDIDWVIQFDLPKHSS 341
Query 723 KMIQTRGR-GR-ARGSKCFLLTSNAGVIEKEQINMYKEKMMND-SILRLQTWDEAVFREK 779
+ GR R R +L ++ + ++ +++ +++ + + R+K
Sbjct 342 WFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKVKLDEIKVPTNNSRKSEELRQK 401
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVI 826
++ IQ ++ I ++ + + + + L C D+ V+
Sbjct 402 MIKIQVSDRAILEAGTRAFV----SHVESYAKHDCHLICSLDDLNVV 444
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/154 (19%), Positives = 60/154 (39%), Gaps = 15/154 (10%)
Query 265 PTGCGKTFVSLLICEHHLKK-FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
PTG GKT +L ++ Q + + + Q SV + E+ V
Sbjct 54 PTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVET 113
Query 324 ISGATAENVPVEQIVENNDI--IILTPQILVNNLKKG---TIPSLSIFTLMIFDECHNTS 378
++G + ++ + +N ++ ++ TP L ++ + L++ DE
Sbjct 114 VTGGQKVDKNIK-MFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADR-- 170
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGL-TAS 411
+N I F +++ S P + GL +A+
Sbjct 171 ----FNEIQFEDHMREIL-SCIPKQRRTGLFSAT 199
>sp|Q6FKS8|SPB4_CANGA ATP-dependent rRNA helicase SPB4 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SPB4 PE=3 SV=1
Length=617
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 91/273 (33%), Gaps = 30/273 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKT 667
KL++L I+ I++ T V +++ + L+ +
Sbjct 248 EKLQNLIHIMNNIRFK----KCIVYFSTCVSVTFFYQYLKYLQQTDKTLREDLQV----I 299
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ + +T +++ L F S IL+ T VA GIDI +LV+ + + +
Sbjct 300 SIHGKLTTQSRRKALSTFTESLSDCILLTTDVAARGIDIPDVDLVLQIDPPTDADIFLHR 359
Query 728 RGRGRARG--SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR + + + E++ I + + + + + + KI +
Sbjct 360 CGRTGRANKIGRAIVFLNEGR--EEDYIPFME-------VKNVDIEETDINKNKISNDNN 410
Query 786 HEKFIRDSQEKPKPVPDKENKKLLCRKCKALACY-----TADVRVIEECHYTVLGDAFKE 840
E + R ++ + D+ N L + A Y + ++ Y LG +
Sbjct 411 DEFYQRFTK---WLLSDRANYDLSVKSYVAFIRYYSKHSATSIFRLQSLDYVSLGKMYGL 467
Query 841 CFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDW 873
+ R K EK + W
Sbjct 468 FRLPRMPEITKYLQDKEKSGETVVGYY--GEGW 498
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 53/134 (40%), Gaps = 15/134 (11%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQIPVYEQQKS 308
K K+ ++ + TG GKT ++ + + A + Q ++
Sbjct 42 AKNKDVVVESVTGSGKTIAFVIPILEKIISEGINNSKFKKGHFYSLILAPTRELSMQIQN 101
Query 309 VFSKYF-----ERHGYRVTGISGATAENVPVEQ---IVENNDIIILTPQILVNNLKKGTI 360
V S + +++ R + G ++V + + E I+I TP +++ L+ ++
Sbjct 102 VVSSFLEHYPEDQYPIRSQLVVGTNEKSVRDDVNTLLDERPQILIGTPGRVLDFLQSPSV 161
Query 361 PSLSIFTLMIFDEC 374
S +++ DE
Sbjct 162 -KTSSCGMVVLDEA 174
>sp|A3LX02|SPB4_PICST ATP-dependent rRNA helicase SPB4 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=SPB4 PE=3 SV=2
Length=617
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/399 (15%), Positives = 121/399 (30%), Gaps = 37/399 (9%)
Query 410 ASVGVGDAKN----TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
A + N + E + K+ +++ + L Q V+ + E
Sbjct 65 AIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELASQIQSVFNNVIEYLP-ED 123
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
+I K + ++ L + L R KD ++ Q++ +
Sbjct 124 KIPIKTQLLVGSLSTVRDDL-DRFLKDKPHILIATPGRMLDFMSSQYVKMNSVEIAILDE 182
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
DK + K + L K + S + + V+ A +
Sbjct 183 ADKLLDFSFEKDVVNILKRLPKQRRTGLFSATISAAGNTIFRAGMNNPVKVAVKSKST-- 240
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILF----VKTRALVD 641
T + + +P K+ L +L + + I++ +
Sbjct 241 -TANSAPSALHISYLMIEPEK---KITTLIKLLHDYRYK----KCIVYFPTCTSVKHFYS 292
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH----NILIAT 697
+ + GN K L G+ + + L +F GD +IL+ T
Sbjct 293 IFQKIVNGNDNTESFKFYSLHGQ--------LATKPRLRTLQSF-TDGDVALNKHILMTT 343
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQIN 754
VA GIDI +LVI + + + GR G +L + ++
Sbjct 344 DVAARGIDIPDVDLVIQLDPPTDPDVFLHRCGRTGRANKVGRAIVMLNDGSRELDYVDFM 403
Query 755 MYKEKMMND-SILRLQTWDEAVFREKILHIQTHEKFIRD 792
K M + L D F++K+ ++ +
Sbjct 404 EVKGVAMQEMPTPDLNQSDHQQFQDKLRKYMLDDRARHE 442
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 52/138 (38%), Gaps = 21/138 (15%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ------KGKV-------VFFANQIPVY 303
K+ ++ A TG GKT + + KV + + +
Sbjct 47 NKDVVVEAVTGSGKTLAFAIPVLQKVSNRLYDSQEEGEAPEKVKQGHMLAIVLSPTRELA 106
Query 304 EQQKSVFSKYF-----ERHGYRVTGISGATAE-NVPVEQIVENN-DIIILTPQILVNNLK 356
Q +SVF+ ++ + + G+ + +++ +++ I+I TP +++ +
Sbjct 107 SQIQSVFNNVIEYLPEDKIPIKTQLLVGSLSTVRDDLDRFLKDKPHILIATPGRMLDFMS 166
Query 357 KGTIPSLSIFTLMIFDEC 374
+ ++ + I DE
Sbjct 167 SQYV-KMNSVEIAILDEA 183
>sp|Q59N29|SPB4_CANAL ATP-dependent rRNA helicase SPB4 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SPB4
PE=3 SV=1
Length=631
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/326 (17%), Positives = 98/326 (30%), Gaps = 18/326 (6%)
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
S++ + L Q V+ + + + ++ + E L + + + L
Sbjct 96 SIVLSPTRELANQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDLNQFLTNQPQIL 155
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
R Q I T ++ DK + K + L K + S
Sbjct 156 IGTPGRILEFLGSSQSIKTSSLEIVILDEADKLLDFSFEKDVINILKKLPKQRRTGLFSA 215
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+ +N Q K +L + +P K+ L
Sbjct 216 TISSAGNTIFRTG-MNNPVKVQVKSKNYFGEQSNSPKSLQLSYMMINPEL---KITTLLT 271
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
IL + + + + LK L G+ +
Sbjct 272 ILSKYQYKKAIVYFPTCTSVKHFYQIFNKVYQQESSDEPLKFFSLHGQ--------LNTK 323
Query 677 AQKCILDAFKASGDHNI----LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
++ LD F GD N+ L+ T VA GIDI +LVI + + + GR G
Sbjct 324 SRLKTLDNF-TQGDINLYKHILMTTDVAARGIDIPDVDLVIQIDPPTDPNVFLHRCGRTG 382
Query 732 RARGSKCFLLTSNAGVIEKEQINMYK 757
RA ++ N E++ I +
Sbjct 383 RANKVGRAIVMLNDNCQEEDYIGFME 408
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 25/141 (18%), Positives = 48/141 (34%), Gaps = 25/141 (18%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-------------KVVFFANQIPVY 303
K+ ++ A TG GKT ++ + + + +
Sbjct 47 NKDVVVEAVTGSGKTLSFVIPVLQKISDRLYKPDSDGDLPEPVKRGHMLSIVLSPTRELA 106
Query 304 EQQKSVFSKYFE---------RHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVN 353
Q +SVF++ + + + G G E++ Q + N I+I TP ++
Sbjct 107 NQIQSVFNQVLQYLPEDKGTRINTQLLVGSIGNVREDL--NQFLTNQPQILIGTPGRILE 164
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
L S ++I DE
Sbjct 165 FLGSSQSIKTSSLEIVILDEA 185
>sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus
neoformans var. grubii serotype A (strain H99 / ATCC
208821 / CBS 10515 / FGSC 9487) OX=235443 GN=VAD1 PE=1 SV=1
Length=616
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/329 (12%), Positives = 91/329 (28%), Gaps = 44/329 (13%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G TAS + + +L +I L + + L + Q +
Sbjct 85 GKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTT 144
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
+ D + + + + + ++ G + + V
Sbjct 145 LRDDILRLQQPVHI--------LVGTPGRILDLGSK--GIAGLNKCGIFVMDEADKLLSE 194
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
D AL + ++ + +K+ D + DE+
Sbjct 195 DFMPVIEQTLALCPQERQVMLFSATFPWT----VKEFKD--QHMVQPYEINLMDELTLKG 248
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
++ ++E + V L + +I+F + V+ L
Sbjct 249 VTQYYAYVEESQKV---------------HCLNTLFSKLQINQSIIFCNSTNRVELLAKK 293
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ G + M + + F+ +G L+ + + GIDI
Sbjct 294 VTE------------LGYSCFYSHAKMQQAHRNRVFHDFR-NGMTRNLVCSDLLTRGIDI 340
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARG 735
N+VI +++ + GR G
Sbjct 341 QAVNVVINFDFPRTAESYLHRIGRSGRFG 369
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/379 (15%), Positives = 122/379 (32%), Gaps = 41/379 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q + A+ G++ + A G GKT + I + + +
Sbjct 58 RPSPIQEQAIPMALTGRDILARAKNGTGKT--ASFIIPTLNRINTSLSHIQALILVPTRE 115
Query 302 VYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q V +V +G T + ++ + I++ TP +++ KG I
Sbjct 116 LALQTSQVCKTLGAHIPNLQVMITTGGTTLRDDILRLQQPVHILVGTPGRILDLGSKG-I 174
Query 361 PSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDA 417
L+ + + DE + ++ + + P QV+ +A+
Sbjct 175 AGLNKCGIFVMDEA---------DKLLSEDFMPVIEQTLALCPQERQVMLFSATFPWTVK 225
Query 418 KNTDEAL--DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ D+ + Y L L + +EE ++ V+ F K++ S F
Sbjct 226 EFKDQHMVQPYEINLMDELTLKGVTQYYAYVEESQK-VHCLNTLFSKLQINQSIIFC--- 281
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
+ R+ + ++++ F + + + + + + +C
Sbjct 282 --------NSTNRVELLAKKVTELGYSCFYS---HAKMQQAHRNRVFHDFRNGMTRNLVC 330
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
L ++ N + + A YL + R LT L
Sbjct 331 SDLLTRGIDIQAVNVVINFDF---PRTAESYLHRIGRSGRFGHLGLAISLLTLEDRHNLY 387
Query 596 ELES-----VSRDPSNENP 609
+ES ++ P+ +P
Sbjct 388 RIESELGTEIAPIPAVIDP 406
>sp|Q9LIH9|RH51_ARATH DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis
thaliana OX=3702 GN=RH51 PE=2 SV=1
Length=568
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/257 (16%), Positives = 78/257 (30%), Gaps = 37/257 (14%)
Query 545 LRKYNDALIISEHARMKDA-----LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
+ K+ L+I E R+ + ++ + R Q + ++
Sbjct 233 IYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSP 292
Query 600 VSRDPSNENPKL--------------EDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
V D + K+ + +L N ++F T V
Sbjct 293 VHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNKKIMVFFSTCKSVQFHTE 352
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
++ ++ ++ + GM + F IL+ T VA G+D
Sbjct 353 IMK------------ISDVDVSDIHGGMDQNRRTKTFFDF-MKAKKGILLCTDVAARGLD 399
Query 706 IAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK----CFLLTSNAGVIEKEQINMYKEKM 760
I + +I Y+ + I GR R G+K L+ I + K
Sbjct 400 IPSVDWIIQYDPPDKPTEYIHRVGRTARGEGAKGKALLVLIPEELQFIRYLKAAKVPVKE 459
Query 761 MNDSILRLQTWDEAVFR 777
+ + RL A+ +
Sbjct 460 LEFNEKRLSNVQSALEK 476
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 2/126 (2%)
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQQKS 308
P ++GK+ + A TG GKT L+ L ++F V+ + Q K+
Sbjct 120 IQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKN 179
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V + + H V+ + G ++I ++++I TP L+++L+
Sbjct 180 VAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKC 239
Query 369 MIFDEC 374
++ DE
Sbjct 240 LVIDEA 245
>sp|Q54CD8|DDX54_DICDI ATP-dependent RNA helicase ddx54 OS=Dictyostelium
discoideum OX=44689 GN=helA PE=3 SV=1
Length=1091
Score = 71.7 bits (174), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/323 (16%), Positives = 111/323 (34%), Gaps = 30/323 (9%)
Query 470 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNR------EFGTQKYEQWIVTVQKACMVF 523
+ + I+ E + ++ + + R E G + + +A +F
Sbjct 328 QLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLF 387
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDAL-IISEHARMKDALDYLKDFFSNVRAAGFDEI 582
+M ++ + I L L ++ + R L + ++ + + +
Sbjct 388 EMGFNEQLTEILSKLSENRQTLLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSL 447
Query 583 EQDLTQRFEEKLQELESVSRDPSNENPKL------EDLCFILQEEYHLNPETITILFVKT 636
T R EEKL L + +D + P+L + ++ TI+FV T
Sbjct 448 S-FFTLRHEEKLGVLLFLLKDIIYKKPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVST 506
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ V+ + +E G T + + A+K L F++ +++
Sbjct 507 KYHVEFIHILLER------------AGIASTYIHGYLDPVARKINLAKFRSH-QVGVMVV 553
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQI 753
T +A GIDI + VI +++ I G R G L++ + +
Sbjct 554 TDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLH 613
Query 754 NMYKEKMMNDSILRLQTWDEAVF 776
K +N QT ++ +
Sbjct 614 LYLGRKFLNKFQYEGQTINDPKY 636
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ G + + A TG GKT ++ L + V + + Q V +
Sbjct 265 LDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFS 324
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R I G + + N DIII TP L+++L + + SLS ++FDE
Sbjct 325 QGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPGRLMHHLLETGM-SLSKVQYIVFDEA 383
>sp|A3LST5|SUB2_PICST ATP-dependent RNA helicase SUB2 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=SUB2 PE=3 SV=1
Length=433
Score = 70.6 bits (171), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/156 (19%), Positives = 58/156 (37%), Gaps = 21/156 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L I+FVK+ + L + +F + +G
Sbjct 276 EEKEKNRKLSDLLDSLEF----NQVIIFVKSTQRANELNKLLCS---CNFPSIAVHSGLP 328
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
Q+ ++ +++ + N I ++T V GIDI + NL I Y+ +
Sbjct 329 ------------QEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQ 376
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+K ++ ++E + + +
Sbjct 377 YLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSR 412
Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 51/139 (37%), Gaps = 11/139 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P V+ +
Sbjct 71 HPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVI--CHTRE 128
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN---DIIILTPQILVNNL 355
+ Q + + FSKY V G T +E++ + I++ TP L + L
Sbjct 129 LAYQIRNEYARFSKYMPDVKTEV--FYGGTPIKRDIEKLKSKDTCPHIVVATPGRL-HAL 185
Query 356 KKGTIPSLSIFTLMIFDEC 374
LS + DEC
Sbjct 186 VNEKAIRLSNVKSFVIDEC 204
>sp|P33919|RADD_ECOLI Putative DNA repair helicase RadD OS=Escherichia
coli (strain K12) OX=83333 GN=radD PE=1 SV=2
Length=586
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 37/180 (21%)
Query 241 FKPRNYQLELALPAM---KGKNT--IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF 295
F R YQ E + + T +I PTG GK+ V + + + +G+V+
Sbjct 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV--------IAELARLARGRVLV 54
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
A+ + Q + + G+ + ++ + Q + NL
Sbjct 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG----------KVVFGSVQSVARNL 104
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHP---YNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
F+L+I DECH Y I+ + P +++GLTA+
Sbjct 105 D----AFQGEFSLLIVDECHR-IGDDEESQYQQILTH------LTKVNPHLRLLGLTATP 153
Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 34/231 (15%), Positives = 76/231 (33%), Gaps = 25/231 (11%)
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
+Y+Q + + K ++ ++Y H Y+ + E A +D + L
Sbjct 129 QYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH---YHGMVRGDEKALFRDCIYEL 185
Query 568 --KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI---LQEEY 622
+ + + ++ + Q +LQ + ++ N +L+ I + +
Sbjct 186 PLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI 245
Query 623 HLNPETI--TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
T ++F T + + ++TG +
Sbjct 246 MEFAATRKGVMIFAATVEHAKEIVGLL------PAEDAALITGDTPGA--------ERDV 291
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 731
+++ FKA L+ +V G D +L+ + +V Q GRG
Sbjct 292 LIENFKAQ-RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341
>sp|Q66HG7|DDX59_RAT Probable ATP-dependent RNA helicase DDX59
OS=Rattus norvegicus OX=10116 GN=Ddx59 PE=2 SV=1
Length=589
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 79/200 (40%), Gaps = 24/200 (12%)
Query 592 EKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP 651
++++ DP+ K + L IL ++ P ++FV + D L ++
Sbjct 385 SSVRQIILWVEDPA----KKKKLFEILNDQKLFKPP--VLVFVDCKLGADLLSEAVQK-- 436
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
+TG T+ ++ + ++ IL GD+ ++++T + G+D+ L
Sbjct 437 ---------ITGLSSTSIHSEKSQVERREILKGL-LEGDYEVVVSTGILGRGLDLVNVKL 486
Query 712 VILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
V+ ++ ++ + + GR G+ + +N+ + + K SIL
Sbjct 487 VVNFDMPSSLDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDVAKRVKPT---GSILPP 543
Query 769 QTWDEAVFREKILHIQTHEK 788
Q + E+ Q ++
Sbjct 544 QLLNSPYLHEQKRKEQQKDR 563
Score = 50.9 bits (120), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 37/98 (38%), Gaps = 6/98 (6%)
Query 224 ENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E+ P ++ S ++ P Q+++ + G++ + A TG GKT + + +
Sbjct 206 EHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT--AAFLLPVII 263
Query 283 KKFPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERH 317
+ P+ + + + Q Q + R
Sbjct 264 RALPEDKTPSALILTPTRELAIQIERQAKELMRGLPRM 301
>sp|Q61R02|DDX55_CAEBR Probable ATP-dependent RNA helicase DDX55
homolog OS=Caenorhabditis briggsae OX=6238 GN=CBG06798 PE=3
SV=1
Length=577
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/412 (16%), Positives = 145/412 (35%), Gaps = 30/412 (7%)
Query 433 SLDASVIATVKHNLEELEQVVYKPQK------FFRKVESRISDKFKYIIAQLMRDTESLA 486
+L V+ + + + L V+ + ++ + I + + +Q++ + A
Sbjct 45 NLSDVVVESPTGSGKTLAFVLPMMRMIQNARLQPNEIGALILSPSRELCSQIVNVIKPFA 104
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+++ ++E ++ G QK ++ I + + + +I + +
Sbjct 105 EKMKLNVETVT-------GGQKVDKNIKMFKNKDINILVATPGRLFQIIQHEKTMIARAM 157
Query 547 KYNDALIISEHARMK-----DALDYLKDFFSNVRAAGFDEIEQ--DLTQRFEEKLQELES 599
K L+I E R D + + R G Q + L+ +
Sbjct 158 KGVQLLVIDEADRFNEIQFEDHMREILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQ 217
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP- 658
V + L E ++ + F++ R L + N F K
Sbjct 218 VKVSQERNSAAPSTLKNYFVECPADEKTSVCLEFIRQRTDKKVLIFFPSCNSVRYFHKIF 277
Query 659 -GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
LT R + + P + + AF S + ++I+T V GIDI + VI Y+
Sbjct 278 ERCLTKRPLFAVHGKCSNPHRAAQIKAFSES-TNGVMISTDVMARGIDITDIDWVIQYDL 336
Query 718 VGNVIKMIQTRGR-GR-ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ + GR R R +L + + ++ +++ + + + T +A
Sbjct 337 PKHSSWFVHRAGRTARCGRDGNALILIATEQLAYVSFLDNHEKVKLEEVKVPTSTSRKAE 396
Query 776 F-REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVI 826
R+K++ IQ ++ I + + + + + L C D+ V+
Sbjct 397 ELRQKMIKIQVSDRAILELGTRAFV----SHIESYAKHDCHLICSLDDLNVV 444
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 62/154 (40%), Gaps = 15/154 (10%)
Query 265 PTGCGKTFVSLLICEHHLKK-FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG 323
PTG GKT +L ++ Q + + + + Q +V + E+ V
Sbjct 54 PTGSGKTLAFVLPMMRMIQNARLQPNEIGALILSPSRELCSQIVNVIKPFAEKMKLNVET 113
Query 324 ISGATAENVPVEQIVENND--IIILTPQILVNNLKKG---TIPSLSIFTLMIFDECHNTS 378
++G + ++ + +N D I++ TP L ++ ++ L++ DE
Sbjct 114 VTGGQKVDKNIK-MFKNKDINILVATPGRLFQIIQHEKTMIARAMKGVQLLVIDEADR-- 170
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGL-TAS 411
+N I F +++ S P + GL +A+
Sbjct 171 ----FNEIQFEDHMREIL-SCIPKQRRTGLFSAT 199
>sp|Q47281|T1RE_ECOLX Type I restriction enzyme EcoEI endonuclease
subunit OS=Escherichia coli OX=562 GN=hsdR PE=3 SV=1
Length=813
Score = 71.4 bits (173), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/181 (22%), Positives = 72/181 (40%), Gaps = 36/181 (20%)
Query 243 PRNYQLELALPAMK----GKN-TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 297
PR YQ++ + GKN ++ TG GKT+ + I + + K +++F A
Sbjct 168 PRYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQII---WRLWKAKNKKRILFLA 224
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILT----PQILVN 353
++ + +Q K F+ G +T ++G T + E + I T Q
Sbjct 225 DRNILVDQTK---RNDFQPFGNAMTKVTGRTID-PAYEVHLALYQAI--TGPEEHQKAYK 278
Query 354 NLKKGTIPSLSIFTLMIFDECHN--TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L++ DECH S+ + I+ + GS+ + GLTA+
Sbjct 279 QVAPDFFD------LIVIDECHRGSASEDSAWREILEYF------GSATQV----GLTAT 322
Query 412 V 412
Sbjct 323 P 323
>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus
OX=10090 GN=Ddx1 PE=1 SV=1
Length=740
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+Q Y +I + K + +C A + + +K D
Sbjct 377 SQGYSDFINRMHNQIPQITCDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ + ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLSQGYSDFINRMHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
+ D K + A+L + + + E++++ P K E
Sbjct 394 I--------TCDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKD---LENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K+ +++ N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|Q6FY67|MAK5_CANGA ATP-dependent RNA helicase MAK5 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MAK5 PE=3 SV=1
Length=733
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 71/422 (17%), Positives = 135/422 (32%), Gaps = 27/422 (6%)
Query 414 VGDAKNTDEALDYICKLCASLDAS----VIATVKHNLEE-----LEQVVYKPQKFFRKVE 464
G K + I K+ S D +I T L + L+ V K +
Sbjct 201 TGSGKTLAYGIPIIEKMIKSKDNLRTNGIIFTPTRELAQQVTKHLQNVCSMLLKKNPYMI 260
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI--QNREFGTQKYEQWIVTVQKACMV 522
++ + + + A+ + ++ +N E + + ++ + +A +
Sbjct 261 LSLTGGLSIQKQERLLKYDGSARIVVATPGRFLELIEKNEELMKRFAKIDVLVLDEADRL 320
Query 523 FQMPDKDEESRICKALFLYTSHLRKYND-ALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
Q DE +I K L L+ +I D D L + + DE
Sbjct 321 LQDGHFDEFEKILKHLGRIRKSLKNMEYWQTLIYSATFSTDLFDKLANSSWKKKNNSKDE 380
Query 582 IEQD--LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK-TRA 638
E + L + + + + D + E+ + L E L + FV
Sbjct 381 SEMESVLKHLMTKINFKSKPMMIDANPEDKISAQIKESLIECAPLERDLYCYYFVTLYPG 440
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN------ 692
N IE KL+ + G ++ MT + L+ F+A N
Sbjct 441 TTLIFCNSIESVKKLNAYLINL--GINSFQIHSSMTQKNRLKNLEKFEAMASKNNHLGKP 498
Query 693 -ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEK 750
+LIA+ VA G+DI V+ Y + I GR R ++ +
Sbjct 499 TVLIASDVAARGLDIKGIKHVVHYHLPHSADTYIHRSGRTARGDNEGVAVMICSPQEAMG 558
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+ + + I + + +L I+ ++ +E+ D +L
Sbjct 559 PLRKLRRLLASKEQISKSTKNKKWQQTVPLLPIEID--ILQQLRERSSLANDIAEHELAS 616
Query 811 RK 812
R
Sbjct 617 RS 618
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 112/322 (35%), Gaps = 27/322 (8%)
Query 188 VEKGIKDVETEDLEDKMETS------DIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF 241
++KG+ + ED ++ E DI + + + ++ N S
Sbjct 114 IDKGVDSEKHEDEKETPEDDLATNVFDIDVDLSDVGSGELPGWTDTVDLSMTTINGLSNL 173
Query 242 KPRNY---QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
Q A++GK+ + A TG GKT + + K + + F
Sbjct 174 GFTEMTPIQKLSIPAALEGKDIMGKASTGSGKTLAYGIPIIEKMIKSKDNLRTNGIIFTP 233
Query 299 QIPVYEQQK----SVFSKYFERHGYRVTGISGATAENVPVEQIVE---NNDIIILTPQIL 351
+ +Q +V S +++ Y + ++G + E++++ + I++ TP
Sbjct 234 TRELAQQVTKHLQNVCSMLLKKNPYMILSLTGGLSIQKQ-ERLLKYDGSARIVVATPGRF 292
Query 352 VNNLKKGT--IPSLSIFTLMIFDECHNTSKQ---HPYNMIMFNYLDQKLGGSSGPLPQVI 406
+ ++K + + +++ DE + + I+ + + + Q +
Sbjct 293 LELIEKNEELMKRFAKIDVLVLDEADRLLQDGHFDEFEKILKHLGRIRKSLKNMEYWQTL 352
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
+A+ + K S D S + +V +L KP E +
Sbjct 353 IYSATFSTDLFDKLANS--SWKKKNNSKDESEMESVLKHLMTKINFKSKPMMIDANPEDK 410
Query 467 ISDKFKYII---AQLMRDTESL 485
IS + K + A L RD
Sbjct 411 ISAQIKESLIECAPLERDLYCY 432
>sp|Q5D892|MER3_ARATH DExH-box ATP-dependent RNA helicase DExH17
OS=Arabidopsis thaliana OX=3702 GN=MER3 PE=2 SV=1
Length=1133
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/174 (19%), Positives = 67/174 (39%), Gaps = 20/174 (11%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--------KVVFFANQIPVYEQQKSVF 310
N II APTG GKT + L K + K V+ + + +++ +
Sbjct 42 NMIISAPTGSGKTVLFELCILRLFSKSISKEGSFLHAKGALKTVYISPSKALVQEKLRDW 101
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN----LKKGTIPSLSIF 366
++ F G ++G +++ DII+ TP+ + G + S
Sbjct 102 NQKFNSWGISCLELTGDNETYSTKN--IQDADIILTTPEKFDAVSRYRVTSGGLGFFSDI 159
Query 367 TLMIFDECH--NTSKQHPYNMIMFN----YLDQKLGGSSGPLPQVIGLTASVGV 414
L++ DE H N + I+ + +L S+ +++ ++A++
Sbjct 160 ALVLIDEVHLLNDPRGAALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPN 213
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 38/278 (14%), Positives = 87/278 (31%), Gaps = 52/278 (19%)
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA-AGFDEIEQDLTQRFEEKLQ 595
AL S L+ + + L + N+ A + ++ +RF E+++
Sbjct 177 ALEAIVSRLKILSSNHELRSSTLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGEEMR 236
Query 596 ELESVSRDPSNENPK----LEDLCF--ILQEEYHLNPETITILFVKTRALVDA------- 642
++ ++ K E I + ++F TR
Sbjct 237 PVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKLAQ 296
Query 643 -----------------LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
L+ E +P S + +G N G+ + + F
Sbjct 297 TAMTYGYSNPFIKSREQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEGLF 356
Query 686 KASGDHNILIATSVADEGIDIAQCNLVIL--------------YEYVGNVIKMIQTRGRG 731
+GD ++ T+ GI++ +VI Y+ +++M GR
Sbjct 357 -LNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDR-STLLQMSGRAGRP 414
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
+ ++ + +E +++Y+ + ++ Q
Sbjct 415 PFDDTGMVIIMTR-----RETVHLYENLLNGCEVVESQ 447
>sp|Q63NE3|UVRB_BURPS UvrABC system protein B OS=Burkholderia
pseudomallei (strain K96243) OX=272560 GN=uvrB PE=3 SV=1
Length=696
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 93/686 (14%), Positives = 207/686 (30%), Gaps = 121/686 (18%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFV 273
+L E+ E S LY P+ P Q +E + + + TG GKT
Sbjct 11 DLDESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGV--TGSGKT-- 66
Query 274 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ + + + + FA + Q + F ++F R+ + +
Sbjct 67 --YTMANTIARLGRP----AIVFAPNKTLAAQLYAEFREFFPRNAVEYFV---SYYDYYQ 117
Query 334 VEQIVENNDIII----LTPQILVNNLKKGTIPSLSIFTLMIF------------DECHNT 377
E V D+ I + + T + ++I E H
Sbjct 118 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQM 177
Query 378 S----------KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYI 427
++ ++ + +V G T + + ++
Sbjct 178 ILTLRTGDKIGQREVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELF 237
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+L T + +++ + P + + + I +L E +
Sbjct 238 DDEVDTLHLFDPLTGRV-RQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHR 296
Query 488 RICKDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDEESRICKA-------L 538
K +E Q F + ++ + ++ F E +
Sbjct 297 D-GKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALM 355
Query 539 FLYTSH-LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
L SH L + + + AR ++ +DY S + E FE K++++
Sbjct 356 LLDESHVLIGQLNGMYNGDRARKENLVDYGFRLPSALDNRPLKFPE------FERKMRQV 409
Query 598 ESVSRDPSNENPKL--EDLCFILQEEYHLNPE------------------------TITI 631
VS P++ ++ + +++ ++P+ +
Sbjct 410 VFVSATPADYEQRVSGQTAEQVVRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVL 469
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
+ V T+ + + L ++ + G ++ + + I+ + G
Sbjct 470 ITVLTKRMAEQLTEFLADH------------GVKVRYLHSDIDTVERVEIIRDLRL-GTF 516
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNA 745
++L+ ++ EG+DI + +LV + + +IQT GR R K L A
Sbjct 517 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKALL---YA 573
Query 746 GVIEKEQINMYKEKMMNDSILRLQTWDEAVF----REKILHI-----QTHEKFIRDSQEK 796
I E + + ++I I E + +
Sbjct 574 DRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELKEAQ 633
Query 797 PKPVPDKENKKLLCRKCKALACYTAD 822
+ + ++K + ++ K L AD
Sbjct 634 QRAKFEDMSEKQIAKEIKRLEKQMAD 659
>sp|Q62CK6|UVRB_BURMA UvrABC system protein B OS=Burkholderia
mallei (strain ATCC 23344) OX=243160 GN=uvrB PE=3 SV=1
Length=696
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 93/686 (14%), Positives = 207/686 (30%), Gaps = 121/686 (18%)
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFV 273
+L E+ E S LY P+ P Q +E + + + TG GKT
Sbjct 11 DLDESKFVTFEGSPFQLYQPYPPSGDQPTAIATLVEGVEDGLSFQTLLGV--TGSGKT-- 66
Query 274 SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVP 333
+ + + + + FA + Q + F ++F R+ + +
Sbjct 67 --YTMANTIARLGRP----AIVFAPNKTLAAQLYAEFREFFPRNAVEYFV---SYYDYYQ 117
Query 334 VEQIVENNDIII----LTPQILVNNLKKGTIPSLSIFTLMIF------------DECHNT 377
E V D+ I + + T + ++I E H
Sbjct 118 PEAYVPQRDLFIEKDSSINEHIEQMRLSATKSLMERRDVVIVATVSAIYGIGNPSEYHQM 177
Query 378 S----------KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYI 427
++ ++ + +V G T + + ++
Sbjct 178 ILTLRTGDKIGQREVIARLIAMQYTRNEQDFQRGTFRVRGDTIDIFPAEHAEMAVRVELF 237
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+L T + +++ + P + + + I +L E +
Sbjct 238 DDEVDTLHLFDPLTGRV-RQKIPRFTVYPSSHYVTPRETVMRAVETIKDELRERLEFFHR 296
Query 488 RICKDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDEESRICKA-------L 538
K +E Q F + ++ + ++ F E +
Sbjct 297 D-GKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHFSGAAPGEPPPTLVDYLPPDALM 355
Query 539 FLYTSH-LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
L SH L + + + AR ++ +DY S + E FE K++++
Sbjct 356 LLDESHVLIGQLNGMYNGDRARKENLVDYGFRLPSALDNRPLKFPE------FERKMRQV 409
Query 598 ESVSRDPSNENPKL--EDLCFILQEEYHLNPE------------------------TITI 631
VS P++ ++ + +++ ++P+ +
Sbjct 410 VFVSATPADYEQRVSGQTAEQVVRPTGLVDPQIEVRPASTQVDDVLSEITERVKANERVL 469
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
+ V T+ + + L ++ + G ++ + + I+ + G
Sbjct 470 ITVLTKRMAEQLTEFLADH------------GVKVRYLHSDIDTVERVEIIRDLRL-GTF 516
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNA 745
++L+ ++ EG+DI + +LV + + +IQT GR R K L A
Sbjct 517 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGKALL---YA 573
Query 746 GVIEKEQINMYKEKMMNDSILRLQTWDEAVF----REKILHI-----QTHEKFIRDSQEK 796
I E + + ++I I E + +
Sbjct 574 DRITDSMRRAIDETERRRAKQIAYNEKMGITPRGVVKRIKDIIDGVYNADEARAELKEAQ 633
Query 797 PKPVPDKENKKLLCRKCKALACYTAD 822
+ + ++K + ++ K L AD
Sbjct 634 QRAKFEDMSEKQIAKEIKRLEKQMAD 659
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo
abelii OX=9601 GN=DDX1 PE=2 SV=1
Length=740
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+Q Y +I + K + +C A + + +K D
Sbjct 377 SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ + ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 44/261 (17%), Positives = 86/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLSQGYSDFINRMHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
V D K + A+L + + + E++++ P K E
Sbjct 394 V--------TSDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICK---DLENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K +++ N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo
sapiens OX=9606 GN=DDX1 PE=1 SV=2
Length=740
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 17/251 (7%)
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
+Q Y +I + K + +C A + + +K D
Sbjct 377 SQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGE-D 435
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRD---PSNENPKL-EDLCFILQEE 621
+ D +V + ++ + + ++ + ++D P +P++ + IL+ E
Sbjct 436 SVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGE 495
Query 622 Y-----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
Y + I+F +T+ D L+ + K +
Sbjct 496 YAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQF---SCVCLHGDRKPH 552
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRA 733
+K L+ FK GD LI T VA GIDI VI N + I GR
Sbjct 553 ERKQNLERFK-KGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAER 611
Query 734 RGSKCFLLTSN 744
G L+ +
Sbjct 612 MGLAISLVATE 622
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 44/261 (17%), Positives = 86/261 (33%), Gaps = 40/261 (15%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLSQGYSDFINRMHNQIPQ 393
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
V D K + A+L + + + E++++ P K E
Sbjct 394 V--------TSDGKRLQ-----VIVCSATLHSFDVKKLS------EKIMHFPTWVDLKGE 434
Query 465 SRISDKFKYIIAQLMRDTESLAKRICK---DLENLSQIQNREFGTQKYEQW-----IVTV 516
+ D +++ + T+ L +R+ K +++ N G E W I+
Sbjct 435 DSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG 494
Query 517 QKACMVFQMPDKDEESRICKA 537
+ A + D+ C+
Sbjct 495 EYAVRAIKEHKMDQAIIFCRT 515
>sp|Q6FN65|ROK1_CANGA ATP-dependent RNA helicase ROK1 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=ROK1 PE=3 SV=1
Length=565
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 58/140 (41%), Gaps = 8/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E + G++ + CAPTG GKT L+ + + K + +
Sbjct 146 EPTPIQCEAIPLCLNGRDLLACAPTGSGKTLAFLIPLLQQIIEEKNFSGVKGLIISPTKE 205
Query 302 VYEQQKSVF-----SKYFERHG-YRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNN 354
+ Q + Y ++ +V +S + + + I + D+II TP L++
Sbjct 206 LATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAKLRNKVISDKKYDLIISTPLRLIDV 265
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K + LS +IFDE
Sbjct 266 VKNEALD-LSNVKHLIFDEA 284
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 74/390 (19%), Positives = 144/390 (37%), Gaps = 50/390 (13%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ--NREFGTQKYEQWIV 514
+K F V+ I K + Q+ + L+KRI D + Q+ ++ G + ++
Sbjct 189 EKNFSGVKGLIISPTKELATQIFNECVKLSKRIYLDKKRPLQVAILSKSLGAK-LRNKVI 247
Query 515 TVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD----- 569
+ +K ++ P + + +AL L +++A + + ++ D L
Sbjct 248 SDKKYDLIISTPLRLIDVVKNEALDLSNVKHLIFDEADKLFDKTFIEQTDDILNSCTDPS 307
Query 570 -----FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS-------NENPKLEDLCFI 617
F + + ++ + + + E+ + + NE KL + +
Sbjct 308 MRKSMFSATIPSSVEETANSIMNDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQL 367
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
+Q+ P I+F+++ A AL + +L + + + T
Sbjct 368 VQQGEFKPP---IIIFLESIARAKALYH------ELMYDRINVDVIHA------ERTAIQ 412
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS- 736
++ I++ FK +G+ LI T V GID NLVI Y+ + GR G
Sbjct 413 REKIIERFK-TGELWCLICTDVLARGIDFKGVNLVINYDVPTTAQAYVHRIGRTGRGGRS 471
Query 737 --KCFLLTSNAGVIEKEQINMYK------EKMMNDSILRLQTWDEAVFREKIL----HIQ 784
L T V K IN+ K E MN+ + EA+ + K I
Sbjct 472 GKAVTLYTKLDSVAIKPIINVMKQSGCEVEGWMNNISKITKREKEAIKKGKSHKERDQIS 531
Query 785 THEKFIRDSQEKPK-PVPDKENKKLLCRKC 813
T K R ++K + + + ++L
Sbjct 532 TVPKVERLKRKKKQDMIRASKRRQLESNAI 561
>sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP2 PE=3 SV=1
Length=441
Score = 70.2 bits (170), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/215 (21%), Positives = 83/215 (39%), Gaps = 9/215 (4%)
Query 164 KENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDP-ECQNL 222
K NW + L E+N + E + +K +++ + ++ I + P +
Sbjct 60 KPNWEEELPNLPVFEKNFYQEA----ESVKARSDQEINEFRREHEMTITGHDIPKPITSF 115
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E P + + KP Q + A+ G++ I A TG GKT L H+
Sbjct 116 DEAGFPDYVLEEVKAEGFEKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHI 175
Query 283 KKFP---QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
P G V+ A + Q + SK+ R + + G + ++
Sbjct 176 NAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQIRELSR 235
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I+I TP L++ L+ G +L T ++ DE
Sbjct 236 GAEIVIATPGRLIDMLEIGK-TNLKRVTYLVLDEA 269
Score = 59.4 bits (142), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/172 (15%), Positives = 54/172 (31%), Gaps = 28/172 (16%)
Query 539 FLYTSHLRKYNDALIISEHARMKDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ +RK D + M A D+ ++ +E + +
Sbjct 275 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAHDYLNDPIQVQIGSLELSASHNITQ 334
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++ + K + L L E + ++ ++F T+ D + ++ +
Sbjct 335 LVEVVSDF--------EKRDRLLKHL-ETASEDKDSKILVFASTKRTCDEVTKYLRED-- 383
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
G + + +L F+ G I++AT VA GI
Sbjct 384 ----------GWPALAIHGDKDQRERDWVLQEFR-EGRSPIMVATDVAARGI 424
>sp|Q4R4T6|DDX28_MACFA Probable ATP-dependent RNA helicase DDX28
OS=Macaca fascicularis OX=9541 GN=DDX28 PE=2 SV=1
Length=546
Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 53/132 (40%), Gaps = 16/132 (12%)
Query 610 KLEDLCFILQEE---YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
K+ +L IL+ P ++F + + V+ L ++ + K+ L+ L G+
Sbjct 377 KVAELVHILKHHNRAERTGPSGTVLVFCNSSSTVNWLGYILDDH-KIQHLR---LQGQMP 432
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G+ QK D IL+ T +A G+D LV+ Y++ + I
Sbjct 433 ALMRAGIFQSFQKSSRD---------ILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIH 483
Query 727 TRGRGRARGSKC 738
GR GS+
Sbjct 484 RAGRVGRVGSEV 495
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/183 (21%), Positives = 64/183 (35%), Gaps = 18/183 (10%)
Query 208 DIQIFYQEDPECQNLSENSC------PPSEVSDTNLYSP--FKPRNYQLELALPAMKGKN 259
I+ QE P Q LS P + +P +P Q ++G++
Sbjct 108 SIERAQQEAPAVQKLSSEGNFADLGLEPRVLHALQEVAPEVVQPTTVQSNTIPQLLRGRH 167
Query 260 TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSVFSKYF 314
+ A TG GKT LL L P ++ + + QQ ++
Sbjct 168 VLCAAETGSGKTLSYLLPLFQRLMVQPSLDSLRIPAPRGLVLVPSRELA-QQVQAVAQPL 226
Query 315 ER-HGYRVTGISGATAENVPVEQIVE--NNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
R G V + G Q+ + D+++ TP L LK + SL + ++
Sbjct 227 GRSLGLLVRDLEGGHGMCRIRMQLARQPSADVLVATPGALWKALK-SRLISLEQLSFLVL 285
Query 372 DEC 374
DE
Sbjct 286 DEA 288
>sp|A7TJK8|PRP5_VANPO Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028
/ DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283
/ UCD 57-17) OX=436907 GN=PRP5 PE=3 SV=1
Length=872
Score = 71.0 bits (172), Expect = 3e-11, Method: Composition-based stats.
Identities = 54/326 (17%), Positives = 114/326 (35%), Gaps = 29/326 (9%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
EE+E+ + + R + + K I L R E + + ++ L+ +
Sbjct 368 NEEVEKFTKQ-DRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILTLNSGKLIS 426
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
T++ V + +A +F M + + ++I K + + + D
Sbjct 427 TKRIT--FVVMDEADRLFDMGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAARILTD 484
Query 566 YL-----KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 620
L + N IE + +F + L+ + N E+ +E
Sbjct 485 PLTVTINSNNLVNENVNQSFYIEDNENDKFNRLVNILDGFYKVNKNITSNSEE-----RE 539
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ I+FV ++ D L + +E + + G +
Sbjct 540 IDEEVSDKKIIIFVSSQQFCDLLYSKLENFGYFPY------------TIHAGKPYQERVM 587
Query 681 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSK 737
L+ FK + ++IL+ T V G+++ + +LVI+Y + + T G RG +G
Sbjct 588 NLEKFKTT-TNSILLCTEVLSRGLNVPEVSLVIIYNAAKTFAQYVHTTGRTARGTHKGDA 646
Query 738 CFLLTSNAGVIEKEQINMYKEKMMND 763
LL + +E+ ++
Sbjct 647 ITLLLPDELAAAYILKRALRERELSS 672
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (38%), Gaps = 7/140 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFA 297
+P Q + M G++ I + TG GKT +L +K K + + A
Sbjct 299 EPTAIQSQAIPAIMSGRDLIGISKTGSGKTISYILPMLRQIKAQRTLSKNETGPLGLILA 358
Query 298 NQIPVYEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ Q K+ ++ R +G + + + +I++ TP L++ L
Sbjct 359 PTRELALQINEEVEKFTKQDRSIRTICCTGGSEMKKQINDLKRGVEIVVATPGRLIDILT 418
Query 357 --KGTIPSLSIFTLMIFDEC 374
G + S T ++ DE
Sbjct 419 LNSGKLISTKRITFVVMDEA 438
>sp|Q0CZS8|HAS1_ASPTN ATP-dependent RNA helicase has1 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=has1
PE=3 SV=1
Length=576
Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 36/202 (18%), Positives = 69/202 (34%), Gaps = 19/202 (9%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLS--ENSCPPSEVSDTNLYSPFKP-RNY-- 246
+DVE + + + + P LS ++ P K R
Sbjct 59 AEDVEQTENGETAQDDAAKDAEAPLPSTMGLSLPTDAAPQKFDELNLSEPTMKAIRQMGF 118
Query 247 ------QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFA 297
Q P + G++ + A TG GKT + + L+ P+ G V+
Sbjct 119 ETMTEIQQRTIPPTLAGRDILGAAKTGSGKTLAFLIPAVEMLSALRFKPRNGTG-VIIIT 177
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ Q V + E H + G E++ + +++I TP L+++L+
Sbjct 178 PTRELALQIFGVAKELCEFHSQTYGIVIGGANRRAEAEKLNKGVNLLIATPGRLLDHLQN 237
Query 358 --GTIPSLSIFTLMIFDECHNT 377
G + +++ DE
Sbjct 238 TQGFVYK--NCKVLVLDEADRC 257
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/114 (22%), Positives = 41/114 (36%), Gaps = 9/114 (8%)
Query 675 LPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
L Q F+ + LI T VA G+DI + +I ++ I GR R
Sbjct 379 LKQQTRTQRFFEFCNATQGTLICTDVAARGLDIPAVDYIIQFDPPDEPKAYIHRVGRTAR 438
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
K E +N+ +E R+ + ++KI+ IQ+
Sbjct 439 GTKGKIGRSIMLLQPSEVGFLNVLRE-------ARVPVVEFEFPQKKIIDIQSQ 485
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like
OS=Bos taurus OX=9913 GN=ERCC6L PE=2 SV=1
Length=1242
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 94/546 (17%), Positives = 198/546 (36%), Gaps = 77/546 (14%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER---- 316
I+ G GKT + L N + + S+ S +
Sbjct 119 ILADDMGLGKT----VQIIAFLSGMFDAS------LVNHV-LLIMPTSLISTWLREFVKW 167
Query 317 -HGYRVTGISGATAENVPVE--QIVENNDIIILTPQILVNNLKKGTIPSLSIF--TLMIF 371
G RV G + + +I + N +II T Q+L+NN ++ + + F +I
Sbjct 168 TPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQMLINNWQQLSSLNGQEFLWDYVIL 227
Query 372 DECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-QVIGLTASVGVGDAKNTDEALDYICKL 430
DE H I + + + P +++ LT + + + D+ C+
Sbjct 228 DEAH---------KIKSSSTKSAICARAIPASNRIL-LTGTPIQNNLQELWSLFDFACQ- 276
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFF-----RKVESRISDKFKYIIAQ--LMRDTE 483
S++ T++ E E + + ++ + + +IS+ II L R E
Sbjct 277 -----GSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKE 331
Query 484 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES--------RIC 535
+ K+ + E ++ + G + + ++ EE I
Sbjct 332 EVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIK 391
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ L S L + + +H R+ A + + DEIE + + + Q
Sbjct 392 ELLMETRSPLAELGVLKKLCDHPRLLSARACGLLNLGAAKFSVQDEIEGEDSSDVDHIDQ 451
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+ + S + L DL L++E H T++F ++R +++ ++ ++
Sbjct 452 ISDDTLMEESGKMLFLMDLLKKLRDEGHQ-----TLVFSQSRRILNIIERLLKNR-HFKI 505
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVIL 714
L+ L ++ + F+ + D+++ L+ T V G+ + + V++
Sbjct 506 LRIDGTITH----------LVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVI 555
Query 715 YEYVGNVIKMIQTRGR----GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
++ N Q R G+ + L + V EK +Y+ ++ DS++R T
Sbjct 556 FDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEK----IYRRQVFKDSLIRQTT 611
Query 771 WDEAVF 776
D+
Sbjct 612 GDKKNP 617
>sp|A6RUH2|DRS1_BOTFB ATP-dependent RNA helicase drs1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=drs1 PE=3 SV=1
Length=801
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/196 (18%), Positives = 67/196 (34%), Gaps = 22/196 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL--ESVSRDPSNENPKLEDLCFILQEEYHL 624
+ N+ G + + L + L E + P E ++ L ++ Y
Sbjct 455 MSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYLLYLCANVYTD 514
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
I+F + + I G L+G T + M+ + ++A
Sbjct 515 ----RVIVFFRQKKEAHR-ARIIFG-----------LSGLKATELHGSMSQEQRIKSVEA 558
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLL 741
F+ G + L+AT +A G+DI + VI YE + + + R G C +
Sbjct 559 FR-DGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIA 617
Query 742 TSNAGVIEKEQINMYK 757
+ K + +
Sbjct 618 AEPDRKVVKAAVKASR 633
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 53/134 (40%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
+P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 290 QPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSRVAILMPTR 349
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K + G + V ++ D+II TP +++++
Sbjct 350 ELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS 409
Query 361 PSLSIFTLMIFDEC 374
++ +++ DE
Sbjct 410 FTVDTLEILVLDEA 423
>sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812
GN=ste13 PE=3 SV=1
Length=485
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 269 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHAKML 316
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRG 731
+ + F+ +G L+ + + GIDI N+VI +++ N + I GR
Sbjct 317 QSHRNRVFHNFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF 375
Query 732 RARGSKCFLL 741
RG +
Sbjct 376 GHRGLAISFI 385
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ G++ + A G GKT + + K + K + +
Sbjct 66 RPSPIQEESIPIALSGRDILARAKNGTGKT--AAFVIPSLEKVDTKKSKIQTLILVPTRE 123
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + +V +G T + ++ + I++ TP +++ KG +
Sbjct 124 LALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKG-VA 182
Query 362 SLSIFTLMIFDEC 374
S T + DE
Sbjct 183 DFSECTTFVMDEA 195
>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus
gallus OX=9031 GN=DDX1 PE=1 SV=1
Length=740
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/294 (17%), Positives = 89/294 (30%), Gaps = 16/294 (5%)
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK--DAL 564
Q Y +I + K + +C A + + +K D++
Sbjct 378 QGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSV 437
Query 565 DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL-EDLCFILQEEY- 622
+ D++ + L + + + P P++ + IL+ EY
Sbjct 438 PETVHHVVVIVNPKTDKLWERLGKNHIRTDEVHAKDNTLPGANTPEMWSEAIKILKGEYT 497
Query 623 ----HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ I+F +T+ D ++ + K + +
Sbjct 498 VRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF---SCVCLHGDRKPQER 554
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARG 735
K L+ FK GD LI T VA GIDI VI N + I GR G
Sbjct 555 KQNLERFKR-GDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMG 613
Query 736 SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
L + + + K ++ L+ + + E L + E
Sbjct 614 LAISL-VAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLGEIEEHL 666
Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 41/121 (34%), Gaps = 13/121 (11%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + + DI+
Sbjct 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLEQGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+ TP L + + G + LS ++ DE + ++ + +PQ
Sbjct 344 VGTPGRLDDLVSTGKLN-LSQVRFLVLDEA---------DGLLLQGYSDFINRIHSQIPQ 393
Query 405 V 405
+
Sbjct 394 I 394
>sp|B6DMK2|MER3_ORYSJ ATP-dependent DNA helicase MER3 homolog
OS=Oryza sativa subsp. japonica OX=39947 GN=MER3 PE=2 SV=1
Length=1205
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 51/129 (40%), Gaps = 14/129 (11%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--------KGKVVFFANQIPVYEQQKSVF 310
N +I APTG GKT + L L +F + K ++ A + +++ +
Sbjct 49 NMVISAPTGSGKTVLFELCILRLLSRFLSSEWRFNLIKGTLKTIYIAPMKALVQEKLRDW 108
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT----IPSLSIF 366
+ G ++G + + + D+I+ TP+ + + G + S
Sbjct 109 NMKLGSLGISCLEMTGD--NEFYNTKSIHDADLILTTPEKFDSVSRHGIRDGGLGFFSDI 166
Query 367 TLMIFDECH 375
L++ DE H
Sbjct 167 ALVLIDEVH 175
>sp|Q58969|Y1574_METJA Uncharacterized ATP-dependent helicase
MJ1574 OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1574
PE=3 SV=1
Length=684
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 108/314 (34%), Gaps = 43/314 (14%)
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
K+F + F+ +++ + L LE + D L L L +
Sbjct 225 KEFVKLLFNRDFEVVDKSYNPSSRKYLAILEPKNLDNKQL---LRRLIENLVDN-----N 276
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F TR + L ++ + F K G + ++ I + FK
Sbjct 277 IKTLVFFDTRKETEKLMRFLLNSK--VFYKLSTYKGT--------LPKYVREEIEEKFK- 325
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI-KMIQTRGRGRARGS---KCFLLTS 743
+G+ L+ T+ + GIDI + VI Y + I +IQ GR R +L
Sbjct 326 NGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFGRAGRRDKEALNIIVLRK 385
Query 744 NA-GVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL--------------HIQTHEK 788
+ KE +N E++ I + + F K + EK
Sbjct 386 DGLDYYYKEHLNELYERIRKGIIEYMPVNIKNRFVTKKHLHYLISELKIVDFDELNDFEK 445
Query 789 FIRDS---QEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLG-DAFKECFVS 844
I + K K + K R K Y++ +E +Y +L K ++
Sbjct 446 EIVKELEREGKIKIYKNPITNKTEIRNVKQPI-YSSIRTASDESYYLILDKPWIKSKLLN 504
Query 845 RPHPKPKQFSSFEK 858
+ + F ++ K
Sbjct 505 KTQSEILSFINWLK 518
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 57/174 (33%), Gaps = 12/174 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q++ K+ ++ T GK+ + L F + + + Q
Sbjct 50 QVKALKYLYNKKDVVVTTSTASGKSEIFRLAI---FDNFLSNPDDRYLLIYPTRALINNQ 106
Query 307 KSVFSKYFER------HGYRVTGISGATAENVPVEQIVENNDIIILTPQIL-VNNLKK-- 357
FS E + ++G E + + +++ TP +L LK
Sbjct 107 YEKFSMENELFYKITNKRVKAEILTGDVGLEKRREILKDKPNVLFTTPDMLHYQILKNHN 166
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+ L L++ DE H NM+ KL Q++ L+A+
Sbjct 167 NYLWLLKNLKLLVVDELHVYRGVFGTNMVYVFKRLLKLLKRLNNNLQILCLSAT 220
>sp|Q4P6N0|HAS1_USTMA ATP-dependent RNA helicase HAS1 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=HAS1 PE=3 SV=2
Length=574
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/335 (17%), Positives = 112/335 (33%), Gaps = 49/335 (15%)
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK---DLENLSQIQNREF 504
E++ P + V ++ L+ E L + K + RE
Sbjct 75 EVQARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAIIISPTREL 134
Query 505 GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDAL 564
Q + + F + R +L I++ R+ D L
Sbjct 135 ALQIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNL-------IVATPGRLLDHL 187
Query 565 DYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP--------KLEDLC 615
K F FSN++A DE ++ L FE++++++ + + + ++ K++DL
Sbjct 188 QNTKGFVFSNLKALCIDEADRILEIGFEDEMRQIVKILPNDNRQSMLFSATQTTKVQDLA 247
Query 616 FI------LQEEYHLNPETITILFVKTRALV-------DALKNWIEGNPKLSFLKPGILT 662
I L H + T+ ++ +V L +++ N + ++
Sbjct 248 RISLRPGPLYINVHADLAASTVSRLEQGYVVCESDRRFLLLFTFLKKNAGKKII--VFMS 305
Query 663 GRGKTNQNTGM-------------TLPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQ 708
++ + QK F+ + L+ T VA G+DI
Sbjct 306 SCNSVKYHSDLLNFIDVPVLDLHGKQKQQKRTNTFFEYCNAPCGTLLCTDVAARGLDIPS 365
Query 709 CNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ +I ++ + I GR RA S LL
Sbjct 366 VDWIIQFDPPDDPRDYIHRVGRTARAGNSGKSLLF 400
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 53/133 (40%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P M GK+ + A TG GKT + + H LK P+ G ++ + +
Sbjct 77 QARCIPPLMAGKDVLGAAQTGSGKTLSFLIPAIEMLHRLKFKPRNGTGAII-ISPTRELA 135
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + H I G +++ + ++I+ TP L+++L+ G +
Sbjct 136 LQIFGVAKELMAHHHQTFGIIMGGANRRAEADKLQKGVNLIVATPGRLLDHLQNTKGFVF 195
Query 362 SLSIFTLMIFDEC 374
S + DE
Sbjct 196 --SNLKALCIDEA 206
>sp|Q759L6|SUB2_EREGS ATP-dependent RNA helicase SUB2 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=SUB2 PE=3 SV=1
Length=438
Score = 69.8 bits (169), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L + I+FVK+ + L + + +
Sbjct 281 EEREKNRKLAQLLDDLEF----NQVIIFVKSTLRANELTKLLNAS-NFPAITVH------ 329
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 330 -----GHMRQEERIARYKAFKEF-EKRICVSTDVFGRGIDIERINLAINYDMPSEADQYL 383
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 384 HRVGRAGRFGTKGLAISLVSSKDDEEVLAKIQER 417
Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/140 (24%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 76 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVS--VVVLCNARE 133
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + FSKY V T +++ ++++N D I++ TP L
Sbjct 134 LAYQIRNEYLRFSKYMPDVKTAVFYGGTDTRKDI---ELLKNKDTAPHIVVATPGRLKAL 190
Query 355 LKKGTIPSLSIFTLMIFDEC 374
++ I + +I DEC
Sbjct 191 VRDNNIDLSHVKNFVI-DEC 209
>sp|A8ALP3|RAPA_CITK8 RNA polymerase-associated protein RapA OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
OX=290338 GN=rapA PE=3 SV=1
Length=968
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 68/493 (14%), Positives = 146/493 (30%), Gaps = 63/493 (13%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S+ P M + + +P V+ LTA+
Sbjct 271 DAQWDLLVVDEAHHLVWSEDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQ-KFFRKVESRISDKFKYIIAQLM 479
++ LD S + +EE + +++S++ ++ L+
Sbjct 318 QLGMESHFARLRLLDPSRFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNEELNMLGDLI 377
Query 480 RDTESLAKRICKDLENLSQIQNREF-GTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ +D+E L Q N + G Q Q +V++ K
Sbjct 378 GE---------QDIEPLLQTANSDRDGAQNARQELVSMLMDRHGTSRVLFRNTRNGVKGF 428
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
H K ++ + K S A + + Q FE
Sbjct 429 PKRELHTIKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE------- 478
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
S + L + ++ A L+ + ++
Sbjct 479 ----GDSGTWWNFDPRVEWLMGHLTSHRSQKVLVICAKAATALQLEQVLRER---EGIRA 531
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEY 717
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 532 AVF--------HEGMSIIERDRAAAWFSEEDSGAQVLLCSEIGSEGRNFQFASNLVMFDL 583
Query 718 VGNVIKMIQTRGR 730
N + Q GR
Sbjct 584 PFNPDLLEQRIGR 596
>sp|P0DW40|HAMB_BACCE Hachiman protein HamB OS=Bacillus cereus
OX=1396 GN=hamB PE=3 SV=1
Length=1120
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+K +I PT GKT V+ + L K P ++ A + + + S
Sbjct 280 ELLKNDGFVIGMPTSSGKTKVAEVTILKTLTKSP---GALCIYIAPYRSLANEVEFSLSS 336
Query 313 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
FE GY+V+ + G + + Q+ + ++II+TP+ + L+ L+I D
Sbjct 337 MFEIMGYQVSQLYGGSQTSPLDRQLTKQANVIIVTPEKAKSMLRSNK-DLKDRIQLVIID 395
Query 373 ECH 375
E H
Sbjct 396 EGH 398
>sp|Q7XJN0|RH17_ARATH DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis
thaliana OX=3702 GN=RH17 PE=2 SV=1
Length=609
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/215 (18%), Positives = 66/215 (31%), Gaps = 30/215 (14%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE---- 607
L + + + L+ S A D +D+ + L PS
Sbjct 247 LSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQLVQRY 306
Query 608 -----NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIE--GNPKLS------ 654
+L L +L+ + ++F TR VD + + P S
Sbjct 307 LRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSETEEEG 366
Query 655 ----FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
FLK G M ++ FK +L++T VA G+D +
Sbjct 367 TKELFLKCKTFRLHGS------MEQEDRRSAFGTFKTEKQA-VLLSTDVAARGLDFPKVR 419
Query 711 LVILYEYVGNVIKMIQTRGR-GR-ARGSKCFLLTS 743
+I Y+ G + + GR R + L
Sbjct 420 CIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQ 454
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 5/133 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK----KFPQGQKGKVVFFANQIPV 302
Q + + G++ ++ APTG GKT L HHL+ K + + +
Sbjct 57 QAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTREL 116
Query 303 YEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
Q K R + V G + G + ++ + I+I TP L+++LK
Sbjct 117 CLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASF 176
Query 362 SLSIFTLMIFDEC 374
+IFDE
Sbjct 177 VHKNLRWVIFDEA 189
>sp|A0KSP4|RAPA_SHESA RNA polymerase-associated protein RapA OS=Shewanella
sp. (strain ANA-3) OX=94122 GN=rapA PE=3 SV=1
Length=968
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 144/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERVLIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAFADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEENSYKDVAVAAEALAGDAKLSDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ + ++ + Q + E + L + + A + R+
Sbjct 376 SEK--DIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRI 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + + R + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPEQYLTAARVNEMMGGRKSLEAQAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASGADTALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|A7F4L5|DRS1_SCLS1 ATP-dependent RNA helicase drs1 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=drs1 PE=3 SV=1
Length=801
Score = 70.6 bits (171), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/196 (18%), Positives = 67/196 (34%), Gaps = 22/196 (11%)
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL--ESVSRDPSNENPKLEDLCFILQEEYHL 624
+ N+ G + + L + L E + P E ++ L ++ Y
Sbjct 455 MSSSVDNLIRVGLNRPVRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYLLYLCANVYTD 514
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
I+F + + I G L+G T + M+ + ++A
Sbjct 515 ----RVIVFFRQKKEAHR-ARIIFG-----------LSGLKATELHGSMSQEQRIKSVEA 558
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLL 741
F+ G + L+AT +A G+DI + VI YE + + + R G C +
Sbjct 559 FR-DGKASFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIA 617
Query 742 TSNAGVIEKEQINMYK 757
+ K + +
Sbjct 618 AEPDRKVVKAAVKASR 633
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 53/134 (40%), Gaps = 1/134 (1%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQI 300
+P Q + A+ GK+ + A TG GKT ++ L P+ +V
Sbjct 290 QPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLERLLYRPKKVPTSRVAILMPTR 349
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q +V +K + G + V ++ D+II TP +++++
Sbjct 350 ELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELRLRPDVIIATPGRFIDHMRNSPS 409
Query 361 PSLSIFTLMIFDEC 374
++ +++ DE
Sbjct 410 FTVDTLEILVLDEA 423
>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DHH1 PE=3 SV=1
Length=522
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/162 (15%), Positives = 56/162 (35%), Gaps = 14/162 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L ++ +I+F + V+ L I G + M
Sbjct 274 VHCLNTLFNKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARML 321
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR R
Sbjct 322 QHNRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSG-R 379
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
L + ++ + ++++ + Q ++ ++
Sbjct 380 FGHLGLAINLINWEDRFNLYRIEQELGTEIQPIPQVIEKNLY 421
Score = 60.6 bits (145), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 71 KPSPIQEETIPVALTGRDILARAKNGTGKT--AAFVIPTLERVNPKISKTQALILVPTRE 128
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ + II+ TP +++ KG +
Sbjct 129 LALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKG-VA 187
Query 362 SLSIFTLMIFDEC 374
LS + DE
Sbjct 188 DLSTCQTFVMDEA 200
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens OX=9606
GN=POLQ PE=1 SV=2
Length=2590
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/172 (22%), Positives = 71/172 (41%), Gaps = 25/172 (15%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++GKN + APT GKT V+ L+ + + + K +F + V +++K F
Sbjct 106 LEGKNLVYSAPTSAGKTLVAELLILKRVLEMRK----KALFILPFVSVAKEKKYYLQSLF 161
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI---LVNNLKKGTIPSLSIFTLMIF 371
+ G +V G G+T+ + + + DI + T + L+N L + + + +++
Sbjct 162 QEVGIKVDGYMGSTSPS----RHFSSLDIAVCTIERANGLINRLIEE--NKMDLLGMVVV 215
Query 372 DECHNTSKQH------------PYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
DE H H Y L S Q++G++A+
Sbjct 216 DELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSAT 267
Score = 39.8 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 16/74 (22%), Positives = 31/74 (42%), Gaps = 5/74 (7%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL---Y-EYVGNVIKMI 725
+ G+T + I AF+ G +L ATS G+++ ++I + +++
Sbjct 417 HAGLTFEERDIIEGAFR-QGLIRVLAATSTLSSGVNLPARRVIIRTPIFGGRPLDILTYK 475
Query 726 QTRGRGRARGSKCF 739
Q GR +G
Sbjct 476 QMVGRAGRKGVDTV 489
>sp|A3QA31|RAPA_SHELP RNA polymerase-associated protein RapA OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) OX=323850
GN=rapA PE=3 SV=1
Length=968
Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats.
Identities = 76/537 (14%), Positives = 172/537 (32%), Gaps = 76/537 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNT--S 378
+ + + ++D T Q+ L+ K+ + + LM+ DE H+ +
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLMVVDEAHHLEWT 286
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
++ P + + + S +P V+ LTA+ D
Sbjct 287 EEEP------SRAYRVVEALSEVVPGVLLLTATP----------------------DQLG 318
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+ L L+ P +F+ ++ +A S + + + +L++
Sbjct 319 HQSHFARLRLLD-----PDRFYDYQAFLKEEESYKEVASAADALASGKRLPDEAVASLTE 373
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ N + T ++ + + + E + L + + A +
Sbjct 374 LLNEKDITPALR--LIEDESVDNEQRDQARSELLQELLDRHGTGRVLYRNSRASVKGFPT 431
Query 559 RMKDA--LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDL 614
R+ +A + + R + + DLT + ++ L ++L S K +
Sbjct 432 RIFNAHPQTMPAQYKTAARVSDMMGGQTDLTAKVKQALSPEKLYQAFESDSASWWKFDPR 491
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + + ++ +L+ + G T + GM+
Sbjct 492 VDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMS 540
Query 675 LPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
+ + F + SG LI + + EG + + ++L++ N + Q GR
Sbjct 541 IIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR 600
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI 790
G ++ + N +E +MN L +++ IL + E+ +
Sbjct 601 IGQ-----ANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELL 652
>sp|A7TT88|ROK1_VANPO ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=ROK1 PE=3 SV=1
Length=570
Score = 70.2 bits (170), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/140 (24%), Positives = 57/140 (41%), Gaps = 8/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ ++ + CAPTG GKT L+ + Q K + +
Sbjct 153 EPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKGLIISPTKE 212
Query 302 VYEQQKSVFSKYFE------RHGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNN 354
+ Q K + +V +S + + + + I + DII+ TP L++
Sbjct 213 LANQIFLECIKLSNRIFLDKKRPLQVALLSKSLSAKLRNKVISDKKYDIIVSTPLRLIDV 272
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K + LS +IFDE
Sbjct 273 VKNEALD-LSQVKHLIFDEA 291
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/173 (18%), Positives = 57/173 (33%), Gaps = 18/173 (10%)
Query 555 SEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDL 614
R + + + + + + E +E NE KL +
Sbjct 312 HSSLRKSMFSATIPSNVEEIAKSIMMDPVRVIIGHKEAANTSIEQKLVFCGNEEGKLIAI 371
Query 615 CFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
++QE P I+F+++ AL + + + + +
Sbjct 372 KQLVQEGEFKPP---VIIFLESITRAKALYHEMMYDSLNVDVI-------------HAER 415
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
T + I++ FK SGD LI T V G+D NLVI Y+ +
Sbjct 416 TQVQRNKIIERFK-SGDLWCLITTDVLARGVDFKGVNLVINYDVPRTAQAYVH 467
>sp|Q6FML5|PRP5_CANGA Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=PRP5
PE=3 SV=1
Length=816
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 69/162 (43%), Gaps = 16/162 (10%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
S+E+ K ++L +L+ + TI+FV ++ + D ++ + + +
Sbjct 482 SDESDKFKELLSLLKVFNSETVDEKTIIFVSSQQICDIIEKRLTDYSEKLY--------- 532
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ + G ++ L+ FK + ++IL+ T V G+++ + + VILY +
Sbjct 533 ---SIHAGRPYNERRQNLELFKKT-SNSILLCTEVMSRGLNVPEVSRVILYNSAKTFAQY 588
Query 725 IQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
+ + G RG G+ LL N ++K ++
Sbjct 589 VHSTGRTARGTREGTSISLLLPNELSSAYILNKAMRDKDFSE 630
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/134 (22%), Positives = 51/134 (38%), Gaps = 6/134 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPV 302
Q + M G++ I + TG GKT LL H+K + + G+ V FA +
Sbjct 279 QTQTIPAIMSGRDVIGISKTGSGKTISYLLPMIRHVKAQKKLRNGETGPIAVIFAPTREL 338
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGTI 360
Q K +G + ++++ +I I TP ++ L G +
Sbjct 339 AVQINEEVQKLISDLDISSICCTGGSDLKKQIDKLKTGVEIAIATPGRFIDLLSLNGGNL 398
Query 361 PSLSIFTLMIFDEC 374
S + ++ DE
Sbjct 399 VSTLRISFVVMDEA 412
>sp|Q0HR19|RAPA_SHESR RNA polymerase-associated protein RapA OS=Shewanella
sp. (strain MR-7) OX=60481 GN=rapA PE=3 SV=1
Length=968
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 144/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERVLIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAFADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEENSYKDVAVAAEALAGDAKLSDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ + ++ + Q + E + L + + A + R+
Sbjct 376 SEK--DIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRI 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + + R + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPEQYLTAARVNEMMGGRKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASGADTALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|Q0HMR2|RAPA_SHESM RNA polymerase-associated protein RapA OS=Shewanella
sp. (strain MR-4) OX=60480 GN=rapA PE=3 SV=1
Length=968
Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 144/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERVLIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAFADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEENSYKDVAVAAEALAGDAKLSDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ + ++ + Q + E + L + + A + R+
Sbjct 376 SEK--DIAPSIRLIQAEDIDSELQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRI 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + + R + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPEQYLTAARVNEMMGGRKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASGADTALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|P34668|YO12_CAEEL Putative ATP-dependent RNA helicase ZK686.2
OS=Caenorhabditis elegans OX=6239 GN=ZK686.2 PE=3 SV=2
Length=593
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 55/339 (16%), Positives = 115/339 (34%), Gaps = 42/339 (12%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICK--DLENLSQI---QNREFGTQKYEQ 511
F ++ SD I+A R + L +I DL L + + G E+
Sbjct 227 NDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRFLIVDEADRMGKLMREE 286
Query 512 WIVTVQKAC----MVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS-EHARMKDALD- 565
W+ V+ C V + D + R + + L + + + + + R+ A
Sbjct 287 WLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLWNLFKPRLFSATAV 346
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+KD S + L +L +PK L + ++ N
Sbjct 347 SVKDITSGIPQVDHVSGRLALPSSISHRLVV----------TDPKFHPL--AVYQQITRN 394
Query 626 PETITILFVKTR----ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
T++FV L LK + ++ + + + +
Sbjct 395 KFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFG-------------KRRYKM 441
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
L+ F + ++ +LI + V G D+ + + VI Y + + GR G +++
Sbjct 442 LEKFNKN-ENRVLICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGRAGQDGYVI 500
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
+ ++ + M K + + Q +E +F + +
Sbjct 501 SVGDKESKRLFVKMLKVTNLWGDTVEEQ-MEEYIFEKDM 538
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/213 (20%), Positives = 80/213 (38%), Gaps = 17/213 (8%)
Query 169 KTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCP 228
+ K+ ++E L + +++ T TS + ++L+ S
Sbjct 74 EIFKVLGKQEMKNLEALKVTSSWVQNATTFSATIDSSTSQ---KLSQIELPEHLTVPSAI 130
Query 229 PSEVSDTNLYSP---FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
+ P F+ R+ P ++ ++ I APTG GKT +L +
Sbjct 131 STWFPVQYAVLPSLFFEIRS------PPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSK 184
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY-RVTGISGATAENVPVEQIVEN-NDI 343
P + + V + Q F ++ + G +V +SGA Q+ + ++
Sbjct 185 P-SKILQAVILVPVQTLVAQIVDEFKRWNDESGVAKVVSLSGANDFEKEARQLASDPPNV 243
Query 344 IILTPQILVNNLKKGTIPSLSIFTL--MIFDEC 374
I+ TP LV +L P + + L +I DE
Sbjct 244 IVATPARLVQHLTSKIPPPIDLSKLRFLIVDEA 276
>sp|Q2UUN6|HAS1_ASPOR ATP-dependent RNA helicase has1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=has1
PE=3 SV=2
Length=596
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/302 (16%), Positives = 95/302 (31%), Gaps = 46/302 (15%)
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
+ + +L + + RE Q + Q + + +
Sbjct 172 SFLIPAIEMLSALRFKPRNGTGAIIVSPTRELALQIFGQVRELLAHHSQTYGIVIGGANR 231
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFE 591
R L K + L+++ R+ D L + F F N+R DE ++ L FE
Sbjct 232 R------AEAEKLMKGVN-LLVATPGRLLDHLQNTQGFVFKNLRTLIIDEADRILEVGFE 284
Query 592 EKLQELESVSRDPSNENP--------KLEDLCFI-------------LQEEYHLNPETIT 630
++++++ + + + K+EDL I +E +
Sbjct 285 DEMRQIAKILPSENRQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 344
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPA 677
+ + L ++++ N K + L+ +
Sbjct 345 YVICEADKRFLLLFSFLKRNLKKKII--VFLSSCNSVKYYGELLNYIDLPVLDLHGKQKQ 402
Query 678 QKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
QK F+ + LI T VA G+DI + +I ++ + I GR R
Sbjct 403 QKRTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGSN 462
Query 736 SK 737
K
Sbjct 463 GK 464
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/125 (18%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT + + L+ P+ G ++ + + Q
Sbjct 154 LAGRDVLGAAKTGSGKTLSFLIPAIEMLSALRFKPRNGTGAII-VSPTRELALQIFGQVR 212
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
+ H + G E++++ ++++ TP L+++L+ G + +
Sbjct 213 ELLAHHSQTYGIVIGGANRRAEAEKLMKGVNLLVATPGRLLDHLQNTQGFVFK--NLRTL 270
Query 370 IFDEC 374
I DE
Sbjct 271 IIDEA 275
>sp|Q7V9M1|UVRB_PROMA UvrABC system protein B OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) OX=167539 GN=uvrB
PE=3 SV=1
Length=677
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 57/412 (14%), Positives = 139/412 (34%), Gaps = 47/412 (11%)
Query 420 TDEALDYICKLCASLDASVIATVKHNL--------EELEQVVYKPQKFFRKVESRISDKF 471
T E LD + + A T K L +EL++ + K + +E++ ++
Sbjct 229 TGEILDSL-NCISIYPAKHFVTPKERLVTAIDDIQKELKEQLDFFNKEGKLLEAQRLEQR 287
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQN----REFGTQKYEQWIVTVQKA----CMVF 523
+++R+ + +LS + + W++ + ++ +
Sbjct 288 TKYDLEMLREV-GYCNGVENYARHLSGREAGSPPECLIDYFPKDWLLVIDESHVTCSQLL 346
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M + D+ + L + L D + A + F S EI
Sbjct 347 AMYNGDQSRKKV--LIEHGFRLPSAADNRPLKSQEFWNKANQTV--FISATPGNWELEIS 402
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ + + ++EDL ++E + ++ T+ + + L
Sbjct 403 SGAIIEQVIRPTGVLDPLVEVRPTKGQVEDLLDEIRE--RSRKKQRVLITTLTKRMAEDL 460
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+++ N ++ L ++ + + I+ + G++++L+ ++ EG
Sbjct 461 TDYLSEND----VRVRYL--------HSEIHSIERIEIIQDLRM-GEYDVLVGVNLLREG 507
Query 704 IDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+D+ + +LV++ + +IQT GR R K L N K+ I +
Sbjct 508 LDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHIEGKALLYADNFTDSMKKAIEETE 567
Query 758 EKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
+ Q + K + + + + + D + L+
Sbjct 568 RRRAIQESYNQQNNIVPMPAGK----KANNSILSFLELSRRVQKDGIDNDLV 615
>sp|O13622|MS116_SCHPO ATP-dependent RNA helicase mss116, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=mss116 PE=3 SV=1
Length=535
Score = 69.8 bits (169), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 67/210 (32%), Gaps = 19/210 (9%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
NP + I+F+ T ++VD + +E + K+ ++G+T ++ I ++
Sbjct 290 NPSSRIIVFLPTISMVDFVGGVLENHLKIPCF-----------ILHSGLTTAQRRSITES 338
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLL 741
F+ IL AT V G+D V+ N I I GR G +L
Sbjct 339 FRKC-QSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLIL 397
Query 742 TSNAG--VIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKP 799
+ + + + + + S L T + + KP
Sbjct 398 LEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKF--SRTNALKTLYGSKPHV 455
Query 800 VPDKENKKLLCRKCKALACYTADVRVIEEC 829
++ + A + +
Sbjct 456 FSGSSQRRATGKNIHESAIALFSLHDVPGL 485
Score = 60.2 bits (144), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/121 (26%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query 258 KNTIICAPTGCGKTFVSLLIC-EHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFSKYF 314
+N ++ A TG GKT LL+ + LK P+ K+ V + + Q K
Sbjct 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLT 136
Query 315 ERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
G RV+ G ++ I N +++I TP L ++L+ I I DE
Sbjct 137 YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDE 196
Query 374 C 374
Sbjct 197 A 197
>sp|Q2GMX1|HAS1_CHAGB ATP-dependent RNA helicase HAS1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=HAS1 PE=3 SV=1
Length=586
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 55/123 (45%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ GK+ + A TG GKT + + + L+ P+ G +V + Q V
Sbjct 147 LAGKDVLGAAKTGSGKTLAFLIPAIEMLNSLRFKPRNGTGVIV-VTPTRELALQIFGVAR 205
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ + H + G +++ + +++I TP L+++L++G+ ++ +L I
Sbjct 206 ELMKNHSQTYGVVIGGANIRAEEDKLGKGVNLLIATPGRLLDHLRRGSFVFKNLKSL-II 264
Query 372 DEC 374
DE
Sbjct 265 DEA 267
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/301 (16%), Positives = 98/301 (33%), Gaps = 49/301 (16%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ + + R
Sbjct 167 LIPAIEMLNSLRFKPRNGTGVIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANIRA 226
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ +L +I+ R+ D L F N+++ DE ++ L FE+++
Sbjct 227 EEDKLGKGVNL-------LIATPGRLLDHLRRGSFVFKNLKSLIIDEADRILEVGFEDEM 279
Query 595 QELESVSRDPSNENP--------KLEDLCFI------------LQEEYHLNP---ETITI 631
+ + + + + K+EDL I ++++ + I
Sbjct 280 RHIVKILPKENRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQFSTVEGLDQGYVI 339
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD---AFKAS 688
+ R L L ++++ K + L+ + + +LD K
Sbjct 340 VDADKRFL--LLFSFLKKMAKKKII--VFLSSCNSVKYYSELLQYIDLQVLDLHGKQKQQ 395
Query 689 GDHNI-----------LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
N LI T VA G+DI Q + ++ ++ + I GR R +
Sbjct 396 KRTNTFFEFCNAKQGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYIHRVGRTARGNNT 455
Query 737 K 737
K
Sbjct 456 K 456
>sp|Q54EC2|DDX55_DICDI Probable ATP-dependent RNA helicase ddx55
OS=Dictyostelium discoideum OX=44689 GN=ddx55 PE=3 SV=1
Length=663
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/185 (16%), Positives = 66/185 (36%), Gaps = 16/185 (9%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
+L L L N I++ T + VD ++ +L+G+ +
Sbjct 296 ERLNQLVHFLLNHIDKN---KIIIYFLTCSTVDYFFKILQS--------VKVLSGKPFFS 344
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ + + D+F + + L++T +A G+DI + V+ Y+ + +
Sbjct 345 LHGKAPHSQRIKVFDSF-SQATNGCLLSTDLAARGLDIPNVDWVLQYDSPQDPKAFVHRI 403
Query 729 GR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTH 786
GR R R + S E + + K ++ +++ + + K +
Sbjct 404 GRTARMGRDGNALIFLSPEEDSYIEFLKIKKVPLV--EMVKAENVTNVLPEIKKISFNDR 461
Query 787 EKFIR 791
E +
Sbjct 462 EIMEK 466
>sp|P50830|YPRA_BACSU Uncharacterized ATP-dependent helicase YprA
OS=Bacillus subtilis (strain 168) OX=224308 GN=yprA PE=1
SV=1
Length=749
Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/335 (16%), Positives = 122/335 (36%), Gaps = 29/335 (9%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRN----Y- 246
+K +L ++ ++ + + E + + P E D + + R Y
Sbjct 1 MKKKSLTELISDLKGNENVVNWHEIEPRE---AKTRPMPESIDERIKAALSKRGIDELYT 57
Query 247 -QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q KG++ + PT GKT L L+ Q + + ++ + +
Sbjct 58 HQYSAFQYVQKGESIVTVTPTASGKTLCYNLPV---LQSIAQDETNRALYLFPTKALAQD 114
Query 306 QKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVENNDIIILTPQILVNNL---KKGTI 360
QKS ++ + G + + G T+ + +++ + I+I P +L + + +
Sbjct 115 QKSELNEIIDEMGIDIKSFTYDGDTSPAIR-QKVRKAGHIVITNPDMLHSAILPHHTKWV 173
Query 361 PSLSIFTLMIFDECHN---TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
++ DE H H N+I +++ G P I +A++
Sbjct 174 SLFENLKYIVIDELHTYRGVFGSHVANVI---RRLKRICRFYGSDPVFICTSATIANPK- 229
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ 477
+ ++ +L D + KH + +V KP R + +++ K +
Sbjct 230 ELGEQLTGKPMRLVD--DNGAPSGRKHFVFYNPPIVNKPLNIRRSATAEVNELAKEFLKN 287
Query 478 LMRDTESLAKRICKD--LENLSQIQNREFGTQKYE 510
++ R+ + L ++ ++ +E GT+
Sbjct 288 KVQTIVFARSRVRVEIILSHIQELVKKEIGTKSIR 322
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/142 (22%), Positives = 61/142 (43%), Gaps = 9/142 (6%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L +E+ N TI+F ++R V+ + + I+ K I RG G
Sbjct 277 VNELAKEFLKNK-VQTIVFARSRVRVEIILSHIQELVKKEIGTKSIRGYRG------GYL 329
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
++ I + GD +++T+ + G+DI Q + ++ Y G+V Q GR R
Sbjct 330 PKERREIERGLR-EGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRR 388
Query 735 GSK-CFLLTSNAGVIEKEQINM 755
+ ++ +N+ I++ +
Sbjct 389 HGESLIIMVANSTPIDQYIVRH 410
>sp|A6ZXP4|SUB2_YEAS7 ATP-dependent RNA helicase SUB2 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=SUB2 PE=3 SV=1
Length=446
Score = 69.4 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L + I+FVK+ + L + + +
Sbjct 289 EEREKNRKLAQLLDDLEF----NQVIIFVKSTTRANELTKLLNAS-NFPAITVH------ 337
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 338 -----GHMKQEERIARYKAFK-DFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYL 391
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 392 HRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQER 425
Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 50/138 (36%), Gaps = 9/138 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 84 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVA--VVVICNARE 141
Query 302 VYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK 356
+ Q + + G T + E +++N D I++ TP L ++
Sbjct 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAE-LLKNKDTAPHIVVATPGRLKALVR 200
Query 357 KGTIPSLSIFTLMIFDEC 374
+ I + +I DEC
Sbjct 201 EKYIDLSHVKNFVI-DEC 217
>sp|Q6FNA2|DBP10_CANGA ATP-dependent RNA helicase DBP10 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP10 PE=3 SV=1
Length=969
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 81/239 (34%), Gaps = 23/239 (10%)
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
S + + L +S ++A L V EQ + ES
Sbjct 323 ESKISDNLEMLFLSTKNDEREA--NLLYILQEVIKLPLATPEQIKQLNDNKADDSDESAE 380
Query 602 RDPSNENPKLEDL-CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
D + K + + + L E T++FV TR V+ L N ++ G
Sbjct 381 EDEDKKRRKRKSFNRKAMPKANELPSEKATVVFVPTRHHVEYLSNLLKD--------CGY 432
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
L + + A+K L F+ G +IL+ T VA G+DI V+ Y +
Sbjct 433 LV----SYIYGALDQHARKSQLYNFRI-GLTSILVVTDVAARGVDIPMLANVVNYSLPAS 487
Query 721 ---VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM----MNDSILRLQTWD 772
I + R RG +++ N + K+ M +++ RL
Sbjct 488 SKIFIHRVGRTARAGNRGWAYSIVSENELPYLLDLELFLGRKILLTPMYEALERLSKEK 546
Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ ++ + A TG GKT +L LK + + + + Q SVF ++
Sbjct 150 LQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFS 209
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
R ++G + ++ N D+II TP ++ LK L +FDE
Sbjct 210 RGTHLRSVLLTGGDSLEDQFGMMMTNPDVIIATPGRFLH-LKVEMNLDLKSVEYAVFDEA 268
>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dhh1 PE=3 SV=1
Length=538
Score = 69.8 bits (169), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 13/121 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + +I+F + V+ L I G + M
Sbjct 272 VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE------------LGYSCFYSHARMI 319
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRAR 734
+ + F+ +G L+ + + GIDI N+VI +++ N + GR
Sbjct 320 QANRNRVFHDFR-NGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF 378
Query 735 G 735
G
Sbjct 379 G 379
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/133 (22%), Positives = 52/133 (39%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q E A+ G++ + A G GKT + + + P+ K + +
Sbjct 69 KPSPIQEEAIPVALTGRDILARAKNGTGKT--AAFVIPALERINPKNTKVQCLILVPTRE 126
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + G V +G T + ++ E II+ TP +++ L +
Sbjct 127 LALQTSQVCKTLGQHLGINVMVTTGGTTLRDDILRLQEPVHIIVGTPGRILD-LAGKNVA 185
Query 362 SLSIFTLMIFDEC 374
LS + + DE
Sbjct 186 DLSECNMFVMDEA 198
>sp|Q07478|SUB2_YEAST ATP-dependent RNA helicase SUB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SUB2
PE=1 SV=1
Length=446
Score = 69.4 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 55/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L + I+FVK+ + L + + +
Sbjct 289 EEREKNRKLAQLLDDLEF----NQVIIFVKSTTRANELTKLLNAS-NFPAITVH------ 337
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 338 -----GHMKQEERIARYKAFK-DFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYL 391
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 392 HRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQER 425
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 50/138 (36%), Gaps = 9/138 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 84 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVA--VVVICNARE 141
Query 302 VYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK 356
+ Q + + G T + E +++N D I++ TP L ++
Sbjct 142 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAE-LLKNKDTAPHIVVATPGRLKALVR 200
Query 357 KGTIPSLSIFTLMIFDEC 374
+ I + +I DEC
Sbjct 201 EKYIDLSHVKNFVI-DEC 217
>sp|A4RGU2|DBP4_PYRO7 ATP-dependent RNA helicase DBP4 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP4 PE=3 SV=1
Length=798
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/132 (22%), Positives = 51/132 (39%), Gaps = 7/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ L + Q+ K+ + + +
Sbjct 76 QARAIPLALKGRDILGAAKTGSGKTLAFLVPLLEKLYREQWTQEAKLGALVLSPTRELAV 135
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL--KKGTIPS 362
Q V K RH G+ + + +I+I TP ++ +L G
Sbjct 136 QTFQVLRKI-GRHHLFSAGLVIGGKSVREEAEALSRMNILIGTPGRILQHLDQTHGF--D 192
Query 363 LSIFTLMIFDEC 374
+ L++ DE
Sbjct 193 VDNLQLLVLDEA 204
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/76 (24%), Positives = 26/76 (34%), Gaps = 3/76 (4%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ A+ + F S H L AT V GID + V+ + + I G
Sbjct 326 HGRQKQLARLDVTKRF-DSSKHACLFATDVIARGIDFTGVDWVVQVDAPEDTDDYIHRVG 384
Query 730 R-GR-ARGSKCFLLTS 743
R R R K +
Sbjct 385 RTARYEREGKAVIFLD 400
>sp|Q8K363|DDX18_MOUSE ATP-dependent RNA helicase DDX18 OS=Mus
musculus OX=10090 GN=Ddx18 PE=1 SV=1
Length=660
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/131 (21%), Positives = 57/131 (44%), Gaps = 4/131 (3%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P ++G++ + A TG GKT + ++ LK P+ G V+ + +
Sbjct 196 QHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMPRNGTG-VLILSPTRELA 254
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q V + H + I G + + V++++ +II+ TP L+++++
Sbjct 255 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKLLNGINIIVATPGRLLDHMQNTPGFMY 314
Query 364 SIFTLMIFDEC 374
++ DE
Sbjct 315 KNLQCLVIDEA 325
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
L+++ +L GK QN T Q C + D IL+ T VA G+DI + + +
Sbjct 435 LNYIDLPVLAIHGKQKQNKRTTTFFQFC-------NADSGILLCTDVAARGLDIPEVDWI 487
Query 713 ILYEYVGNVIKMIQTRGR-GRARGSK 737
+ Y+ + + I GR R +
Sbjct 488 VQYDPPDDPKEYIHRVGRTARGLNGR 513
>sp|A5E1N2|ROK1_LODEL ATP-dependent RNA helicase ROK1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=ROK1 PE=3 SV=1
Length=553
Score = 69.8 bits (169), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/212 (22%), Positives = 80/212 (38%), Gaps = 18/212 (8%)
Query 177 KERNKFSELWIVEKGIKDVETEDLED----------KMETSDIQIFYQEDPECQNLSENS 226
K +NK E V + + +E E ED K+ DI I Q++
Sbjct 69 KSKNKDEERESVAEIVPPLELESEEDARVFRNLHKSKVTGDDIPI---PIGSFQDMIGRF 125
Query 227 CPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--K 283
V L + F +P Q E + ++ I CAPTG GKT L+ L +
Sbjct 126 KIDKRVLSNLLDAEFVEPTPIQCEAIPITLANRDLIACAPTGSGKTLAFLIPLLQQLVSQ 185
Query 284 KFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI-VENND 342
+ + + + + Q + G + +S A + + + D
Sbjct 186 NVLKNHGIRGLIISPTNELAVQIFQQLEIISKGKGLNIAILSKQLAGKISNDVVKASKYD 245
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
I++ TP L++ +K G + LS T ++ DE
Sbjct 246 ILVSTPLRLIDVVKLGKVD-LSKVTQLVIDEA 276
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/250 (18%), Positives = 82/250 (33%), Gaps = 19/250 (8%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
R + + + + + + E +E NE KL +
Sbjct 299 KIRKSMFSATIPSGVEEMAHSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQ 358
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
++Q P I+F+++ AL + +L + K + T
Sbjct 359 MIQNGEFKPP---IIIFLQSITRAKALFH------ELVYDKLNVDVIHA------ERTPK 403
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGS 736
+ ++ FK +GD +LI T V G+D N+VI Y+ + + GR G
Sbjct 404 QRDEVIKRFK-NGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGR 462
Query 737 ---KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
T K IN+ K+ D + + + + ++THE +
Sbjct 463 SGKAVTFFTKEDDKAVKPIINVMKQSGCTDGLSDWMEDLGKLSKREKRAVKTHEIERKKI 522
Query 794 QEKPKPVPDK 803
P + K
Sbjct 523 STVPSVIKQK 532
>sp|A5E726|DBP6_LODEL ATP-dependent RNA helicase DBP6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP6 PE=3 SV=1
Length=663
Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats.
Identities = 49/305 (16%), Positives = 102/305 (33%), Gaps = 31/305 (10%)
Query 492 DLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
L L + Q ++ W + + Q+ D + F++++ L
Sbjct 377 SLRYLVVDEADRLLNQSFQNWSQILISKIHLQQVYDVANVWSLKVQKFIFSATLTTDAGK 436
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE-SVSRDPSNENPK 610
L + F N R ++ ++ + + F E ++ + + K
Sbjct 437 LASLD--------------FHNPRLLIVNDSQRLVNELFSVPAMLSEYKLNFGVAKSSLK 482
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L L + L+ ++F K+ L ++ L+ + G N
Sbjct 483 PLILAKFLIAQEKLSD---VLVFTKSNESSIRLCTLLQAIFDRICLQEKVKVGFMNLTNN 539
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ IL F S NIL+AT + G+D+ V+ Y+ + + + + GR
Sbjct 540 R---TSLRSKILKDF-TSQKINILVATDLIARGLDVTSIKDVVNYDLLNSSREYVHRVGR 595
Query 731 -GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW--------DEAVFREKIL 781
RA + EK + E N+ + ++ DE +++E +
Sbjct 596 TARANQAGNAYNLVFGKGEEKWFKTISSEVSRNNDVKDVEVNLKQLISDEDEKLYQEALQ 655
Query 782 HIQTH 786
+Q
Sbjct 656 SLQDQ 660
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + LK + + + P+ Q ++ +
Sbjct 272 DVLVNASTGSGKTLAYSIPIIESLKDRVVPRV-RAIVLVPTKPLINQVRATMLQLALGTN 330
Query 319 YRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + E+++E D++I TP LV +L +I SLS ++ DE
Sbjct 331 LNIVSLKNDISIREESERLIELVPDVVISTPGRLVEHLAMDSI-SLSSLRYLVVDEA 386
>sp|Q6CM95|SUB2_KLULA ATP-dependent RNA helicase SUB2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=SUB2 PE=3 SV=1
Length=437
Score = 69.4 bits (168), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
NE K L +L + I+FVK+ + L + + +
Sbjct 280 NEKEKNRKLAQLLDDLEF----NQVIIFVKSTVRANELTKLLNAS-NFPAITVH------ 328
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 329 -----GHMKQEERIARYKAFKEF-EKRICVSTDVFGRGIDIERINLAINYDMPNEADQYL 382
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + +++ + +E+
Sbjct 383 HRVGRAGRFGTKGLAISMISSEDDEQVLAKIQER 416
Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 46/137 (34%), Gaps = 7/137 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P + VV N
Sbjct 75 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLD--PVQGEVSVVVLCNARE 132
Query 302 VYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI---IILTPQILVNNLKK 357
+ Q + + G T ++ + + + I+ TP L L +
Sbjct 133 LAYQIRNEYLRFSKYMPDVKTAVFYGGTEYKNDIDLLSKKETVPHIIVATPGRL-KALVR 191
Query 358 GTIPSLSIFTLMIFDEC 374
LS + DEC
Sbjct 192 DKHIDLSHVKNFVIDEC 208
>sp|O60173|DBP7_SCHPO ATP-dependent RNA helicase dbp7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp7
PE=3 SV=1
Length=709
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/297 (16%), Positives = 102/297 (34%), Gaps = 35/297 (12%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
+ L+ + V + + + M ++ ++I L +S ++K
Sbjct 273 LIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKD 332
Query 549 ----NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
+ + + A MKD + L D I ++ + + ++L
Sbjct 333 LSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAPEQLLQRYV-- 390
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVK-----------TRAL--VDALKNWIEGNP 651
PKL + + H+ I+F+ R D ++ ++ P
Sbjct 391 -VVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEMEEAVKEKP 449
Query 652 K-----LSFLKPGILTGRGKTNQ-NTGMTLPAQKCILDAFKASGDH--NILIATSVADEG 703
+S + G+ + + ++ + L+ F +S D +IL+ T VA G
Sbjct 450 DSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARG 509
Query 704 IDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYK 757
+D+ +LV+ Y+ + + I R G+ L E E IN+ K
Sbjct 510 LDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPK----ESEYINLLK 562
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/116 (22%), Positives = 44/116 (38%), Gaps = 8/116 (7%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV-----VFFANQIPVYEQQKSV---FSKYFERH 317
TG GKT LL L + P+ + V A + +Q +V + H
Sbjct 187 TGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSH 246
Query 318 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ G + +I + +I+I TP L ++L+ +S ++ DE
Sbjct 247 WIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDE 302
>sp|A5DTK7|MS116_LODEL ATP-dependent RNA helicase MSS116, mitochondrial
OS=Lodderomyces elongisporus (strain ATCC 11503 /
CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) OX=379508 GN=MSS116
PE=3 SV=1
Length=692
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/253 (15%), Positives = 86/253 (34%), Gaps = 23/253 (9%)
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK---DALDYLKDFFSN 573
+A + + + I +++ + S + +L+ S + A ++ +
Sbjct 290 DEADRLLDVGFEPTLDSIDRSIKMIRSDDAEPLKSLLFSATVDARLDQFAKQHINKKYDY 349
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILF 633
+ D+ E E + ++ +D + K + + +P+ ++F
Sbjct 350 INTVPEDDPE------VHENIHQVMYKCKDAID---KFGSFFNYVNQLVKDSPDMKMMVF 400
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
+ T+ V+ L +++ + I GK + + ++ L FK D I
Sbjct 401 LPTQTAVEFLYSYMSEACHKHDVDIDIFHLHGKRSAS------QRQRALSNFKRD-DSGI 453
Query 694 LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGVIEK 750
LI T VA GID+ V+ + + GR K L + +
Sbjct 454 LITTDVAARGIDVKGVTHVVQLFPSSEIADYVHKVGRTGRAGKE-GKAVLFITQPEMAYV 512
Query 751 EQINMYKEKMMND 763
++N +
Sbjct 513 RRLNSERGVTFEQ 525
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 43/257 (17%), Positives = 85/257 (33%), Gaps = 34/257 (13%)
Query 247 QLELALPAMKGKNTIIC-APTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQI 300
Q + +P ++ + ++C A TG GKT L+ G+ V
Sbjct 157 QQKSIVPLLETERGMVCRAKTGTGKTLTFLIPTLQSAVSRKIASGGRSSGVDTVIIVPTR 216
Query 301 PVYEQQKSVFSKYF--------ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ Q + K Y + G+ + P E I+I TP L
Sbjct 217 DLALQIYDEYQKVLRGISGSRKPHISYVIGGMKNSFNPRNPSE-------IVIATPGRLE 269
Query 353 NNLKKG-TIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT 409
+L+ + + ++DE P + + + PL ++ +
Sbjct 270 ADLRSPLFASAFTDIKYRVYDEADRLLDVGFEPTLDSIDRSIKMIRSDDAEPLKSLL-FS 328
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
A+V D LD K + I TV + E+ + +++ + +
Sbjct 329 ATV--------DARLDQFAKQHINKKYDYINTVPEDDPEVHENIHQVMYKCKDAIDKFG- 379
Query 470 KFKYIIAQLMRDTESLA 486
F + QL++D+ +
Sbjct 380 SFFNYVNQLVKDSPDMK 396
>sp|Q07736|T1RA_ECOLX Type I restriction enzyme EcoAI endonuclease
subunit OS=Escherichia coli OX=562 GN=hsdR PE=1 SV=1
Length=810
Score = 70.2 bits (170), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 74/177 (42%), Gaps = 28/177 (16%)
Query 243 PRNYQLELALPAMK----GKN-TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 297
PR YQL+ ++ G+N ++ TG GKT+ + I + + K +++F A
Sbjct 170 PRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQII---WRLWKSKNKKRILFLA 226
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
++ + +Q K+ F+ G +T +SG T + E + I P+ K+
Sbjct 227 DRNILVDQTKN---NDFQPFGTAMTKVSGRTID-PAYEIHLALYQAI-TGPEEDQKAFKQ 281
Query 358 GTIPSLSIFTLMIFDECHN--TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV 412
+ F L++ DECH S+ + I+ + IGLTA+
Sbjct 282 ---VAPDFFDLIVIDECHRGSASEDSAWREILDYFSSATQ----------IGLTATP 325
Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 37/188 (20%), Positives = 68/188 (36%), Gaps = 16/188 (9%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
NP TI+F + ++ + K + + G L
Sbjct 419 RTNPMDKTIVFCNDIDHAERMRRALVNLNPEQVKKNDKYVMKITGDDEIGKAQ------L 472
Query 683 DAF-KASGDHNILIATS-VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC-- 738
D F + ++ TS + G+D C LV+L + + ++ K Q GRG +
Sbjct 473 DNFINPKKPYPVIATTSELMTTGVDAKTCKLVVLDQNIQSMTKFKQIIGRGTRIDERYGK 532
Query 739 ----FLLTSNAGVI-EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDS 793
L A + E+ + EK+M+ + + E+ F EK+ I H++
Sbjct 533 LWFTILDFKKATELFADERFDGIPEKVMDTTPEDI-ADPESDFEEKLEEISEHDEEQVTG 591
Query 794 QEKPKPVP 801
++P P
Sbjct 592 VDEPPAPP 599
>sp|A5DID7|HAS1_PICGU ATP-dependent RNA helicase HAS1 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=HAS1 PE=3
SV=2
Length=569
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 53/298 (18%), Positives = 95/298 (32%), Gaps = 42/298 (14%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + + + R
Sbjct 160 LIPAIEMLYSLKFKPRNGTGVIVVSPTRELALQIFGVARDLMAHHSQTLGIVIGGANRR- 218
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEK 593
L K + L+I+ R+ D L K F F N++A DE ++ L FE++
Sbjct 219 -----QEADKLMKGVN-LLIATPGRLLDHLQNTKGFIFKNLKALVIDEADRILEIGFEDE 272
Query 594 LQELESVSRDPSNENP--------KLEDLCFI-------------LQEEYHLNPETITIL 632
++++ V ++ K+EDL I E + +
Sbjct 273 MKQIIKVLPSDERQSMLFSATQTTKVEDLARISLRAGPLYINVVPETEVSTADGLEQGYV 332
Query 633 FVKTRALVDALKNWIEGNPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCI 681
+ L +++ N K + + G+ + QK
Sbjct 333 TCDSDMRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELLNYIDLPVLDLHGKQKQQKRT 392
Query 682 LDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + ILI T VA G+DI + +I ++ + I GR R G K
Sbjct 393 NTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTGGK 450
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (42%), Gaps = 8/125 (6%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT + + + LK P+ G +V + + Q V
Sbjct 140 LAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLKFKPRNGTGVIV-VSPTRELALQIFGVAR 198
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
H + + G +++++ +++I TP L+++L+ G I +
Sbjct 199 DLMAHHSQTLGIVIGGANRRQEADKLMKGVNLLIATPGRLLDHLQNTKGFIFK--NLKAL 256
Query 370 IFDEC 374
+ DE
Sbjct 257 VIDEA 261
>sp|Q6P9R1|DDX51_MOUSE ATP-dependent RNA helicase DDX51 OS=Mus
musculus OX=10090 GN=Ddx51 PE=1 SV=1
Length=639
Score = 69.8 bits (169), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/134 (21%), Positives = 44/134 (33%), Gaps = 18/134 (13%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
+ + F +R N +L G ++ +K IL F
Sbjct 478 SRALCFTNSR-----------ENSHRLYLLAQAFGGVSVAEFSSRYGPGQRKKILKQF-E 525
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSN 744
G +LI+T GID+ LVI Y+ + + R G LL
Sbjct 526 QGKIQLLISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLLL-- 583
Query 745 AGVIEKEQINMYKE 758
V E++ + M E
Sbjct 584 -KVQERKFLQMVSE 596
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 58/154 (38%), Gaps = 25/154 (16%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
+ APTG GKT ++ L + + + +Q VF+ Y + RV
Sbjct 226 VSAPTGSGKTLAFVIPVVQALLHRVVCHI-RALVVLPTKELAQQVSKVFNIYTDTTPLRV 284
Query 322 TGISGATAENVPVEQIVENN--------DIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
++G + E +V+ DI++ TP LV+++ + SL +I DE
Sbjct 285 ALVTGQKSLAKEQESLVQKTADGFRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDE 344
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIG 407
M + + Q LP+V+
Sbjct 345 ADR----------MIDSMHQ------SWLPRVVA 362
>sp|A7TJT7|SUB22_VANPO ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=SUB2-2 PE=3 SV=1
Length=442
Score = 69.0 bits (167), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 55/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
EN K L +L + I+FVK+ + L + +
Sbjct 285 QENEKNRKLAQLLDDLEF----NQVIIFVKSTKRANELTKLL-NESNFPAITVH------ 333
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 334 -----GNMKQAERIARYKAFKEF-EKRICVSTDVFGRGIDIERINLAINYDLTTEADQYL 387
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 388 HRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQER 421
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 15/141 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 80 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVS--VVVICNARE 137
Query 302 VYEQ---QKSVFSKYF-ERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVN 353
+ Q + FSKY + G + T + ++++N + I++ TP L
Sbjct 138 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKD----AELLKNKETAPHIVVATPGRL-K 192
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
L + + LS + DEC
Sbjct 193 ALVRDKLIDLSHVKNFVIDEC 213
>sp|P0CQ84|HAS1_CRYNJ ATP-dependent RNA helicase HAS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=HAS1 PE=3 SV=1
Length=607
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 70/413 (17%), Positives = 130/413 (31%), Gaps = 60/413 (15%)
Query 376 NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD 435
N + P + + S P P T+S V A++ DY ++L+
Sbjct 81 NAHDEAPAKRVPEASSSKVTLDDSQPAPA----TSSDAVLGARSAPGT-DYERVPFSTLN 135
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKV---------ESRISDKFKYIIAQLMRDTESLA 486
S T E + + + S K + + +L
Sbjct 136 LSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLR 195
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+ + RE Q + +Q F + + + +L
Sbjct 196 FKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNL- 254
Query 547 KYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
I++ R+ D L K F F N++A DE ++ L FEE+++++ + +
Sbjct 255 ------IVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSEN 308
Query 606 NENP--------KLEDLCFI------LQEEYHLNPETITILFVKTRALV-------DALK 644
++ K+ DL I L E T ++ +V L
Sbjct 309 RQSMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLF 368
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQKCILDAFK-ASGD 690
+++ N K + + + + QK F+ +
Sbjct 369 TFLKKNLKKKVI--VFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAP 426
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
IL+ T VA G+DI + + +I ++ + I GR RA S LL
Sbjct 427 AGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLF 479
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 53/133 (40%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + GK+ + A TG GKT + + L+ P G V+ + +
Sbjct 156 QARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLRFKPVNGTG-VIIISPTRELA 214
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + + H + G +++V+ ++I+ TP L+++L+ G +
Sbjct 215 LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF 274
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 275 K--NLKALVIDEA 285
>sp|P0CQ85|HAS1_CRYNB ATP-dependent RNA helicase HAS1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=HAS1 PE=3 SV=1
Length=607
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 70/413 (17%), Positives = 130/413 (31%), Gaps = 60/413 (15%)
Query 376 NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD 435
N + P + + S P P T+S V A++ DY ++L+
Sbjct 81 NAHDEAPAKRVPEASSSKVTLDDSQPAPA----TSSDAVLGARSAPGT-DYERVPFSTLN 135
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKV---------ESRISDKFKYIIAQLMRDTESLA 486
S T E + + + S K + + +L
Sbjct 136 LSPPTTAAIERMGFETMTEVQARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLR 195
Query 487 KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 546
+ + RE Q + +Q F + + + +L
Sbjct 196 FKPVNGTGVIIISPTRELALQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNL- 254
Query 547 KYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
I++ R+ D L K F F N++A DE ++ L FEE+++++ + +
Sbjct 255 ------IVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSEN 308
Query 606 NENP--------KLEDLCFI------LQEEYHLNPETITILFVKTRALV-------DALK 644
++ K+ DL I L E T ++ +V L
Sbjct 309 RQSMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLF 368
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGM-------------TLPAQKCILDAFK-ASGD 690
+++ N K + + + + QK F+ +
Sbjct 369 TFLKKNLKKKVI--VFFSSCNSVKYHAELLNYIDVPVLDLHGKQKQQKRTNTFFEFINAP 426
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
IL+ T VA G+DI + + +I ++ + I GR RA S LL
Sbjct 427 AGILLCTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARAGKSGKSLLF 479
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 53/133 (40%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + GK+ + A TG GKT + + L+ P G V+ + +
Sbjct 156 QARTIPPLLAGKDVLGAARTGSGKTMAFLIPSVELLSTLRFKPVNGTG-VIIISPTRELA 214
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + + H + G +++V+ ++I+ TP L+++L+ G +
Sbjct 215 LQIFGVAKELMQGHSQTFGVLMGGANRKAEADKLVKGVNLIVATPGRLLDHLQNTKGFVF 274
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 275 K--NLKALVIDEA 285
>sp|Q6BL34|DBP10_DEBHA ATP-dependent RNA helicase DBP10 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP10 PE=3
SV=2
Length=932
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 53/253 (21%), Positives = 94/253 (37%), Gaps = 19/253 (8%)
Query 136 CEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKG---- 191
EE I T + AG++ E L SD E + + ++K ++ +EKG
Sbjct 3 DEEDYDIAGTLAL-AGSDSEPESDLNSDNEEVQDEIVSDEDDTKHKPNKKQKLEKGKSKQ 61
Query 192 -IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------KPR 244
+E D E + E+ D+ ++ + ++N PS L + +P
Sbjct 62 TFPSLELSDDEAENESKDMASYFVANNPQAKKAKNGSFPSFGFSKFLLTNISKKGFKQPT 121
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
Q + M+ ++ + A TG GKT L LK + + + +
Sbjct 122 PIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELAS 181
Query 305 Q---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
Q Q FSK + + G + ++ N D+I+ TP ++ LK
Sbjct 182 QTFKQVKEFSKGTDLRSIV---LIGGDSLEEQFSSMMTNPDVIVATPGRFLH-LKVEMEL 237
Query 362 SLSIFTLMIFDEC 374
L ++FDE
Sbjct 238 ELKTVEYIVFDEA 250
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 49/127 (39%), Gaps = 14/127 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
L + TI+FV T+ V+ + ++ G L + + A+K L
Sbjct 386 MLPSKHSTIIFVPTKHHVEYVTTLLKD--------AGYLV----SYIYGTLDQHARKQQL 433
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLL 741
F+ G ++L+ T VA GIDI V+ Y G+ I GR RA S
Sbjct 434 YQFRI-GMTSLLVVTDVAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYS 492
Query 742 TSNAGVI 748
N +
Sbjct 493 IVNEKEL 499
>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6
OS=Dictyostelium discoideum OX=44689 GN=ddx6 PE=3 SV=1
Length=423
Score = 69.0 bits (167), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/270 (17%), Positives = 83/270 (31%), Gaps = 34/270 (13%)
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH-ARMKDALDYLK 568
+ + + C + L +R YN I+ R+ D
Sbjct 127 RELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNV 186
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSR------------DPSNENPKLEDLCF 616
SN DE ++ L+Q F+ +++L + + ++ K L
Sbjct 187 ANLSNCHTMIMDEADKLLSQEFQPLVEQLINFLPQQRQILLFSATFPVTVKSFKEHYLQQ 246
Query 617 I----LQEEYHLNPETITILFVKTRALVDALKNWIEG-NPKLSFLKPGIL---------- 661
L EE L T FV+ R + L S + +
Sbjct 247 AFEINLMEELTLKGVTQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 306
Query 662 --TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
G + M + + F+ +G L+++ + GIDI N+VI +++
Sbjct 307 TELGYSCFFIHAKMVQAHRNRVFHDFR-NGACRNLVSSDLFTRGIDIQDVNVVINFDFPK 365
Query 720 ---NVIKMIQTRGRGRARGSKCFLLTSNAG 746
+ I GR G L+T
Sbjct 366 HSETYLHRIGRSGRFGHLGLAINLITYEDR 395
Score = 62.9 bits (151), Expect = 6e-09, Method: Composition-based stats.
Identities = 53/319 (17%), Positives = 112/319 (35%), Gaps = 27/319 (8%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQL 248
+ ++ +++ +T D+ D + +L + + KP Q
Sbjct 23 DNWKSQLKLPPRDERRQTEDVTATEGNDFDDLHLKRD-----LLRGIFEKGYVKPSPIQE 77
Query 249 ELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKS 308
+ A+ G++ + A G GKT + + K P +V+ + Q
Sbjct 78 KAIPIALAGRDIMARAKNGTGKT--ASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQ 135
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V + + +V +G T+ + ++ I++ TP +++ L + + +LS
Sbjct 136 VCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLD-LAQKNVANLSNCHT 194
Query 369 MIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEALD 425
MI DE + ++ + LP Q++ +A+ V + L
Sbjct 195 MIMDEA---------DKLLSQEFQPLVEQLINFLPQQRQILLFSATFPVTVKSFKEHYLQ 245
Query 426 YI--CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE 483
L L + +EE Q ++ F K++ S F + + E
Sbjct 246 QAFEINLMEELTLKGVTQYYAFVEE-RQKIHCLNTLFSKLQINQSIIFCNSVNR----VE 300
Query 484 SLAKRICKDLENLSQIQNR 502
LAK+I + + I +
Sbjct 301 LLAKKITELGYSCFFIHAK 319
>sp|Q7VXH4|UVRB_BORPE UvrABC system protein B OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) OX=257313
GN=uvrB PE=3 SV=1
Length=678
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 86/602 (14%), Positives = 195/602 (32%), Gaps = 101/602 (17%)
Query 233 SDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S +LY P+ P Q E + + + TG GKT + + +
Sbjct 12 SPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGV--TGSGKT----YTMANMIARL 65
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG------------------ISGA 327
+ + A + Q + ++F R+ I
Sbjct 66 GRP----ALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKD 121
Query 328 TAENVPVEQ--------IVENND-IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 378
++ N +EQ ++E D +I+ T + G ++ ++I S
Sbjct 122 SSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAM----VLILRTGDRIS 177
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
++ ++ + + + +V T + ++ L SL+
Sbjct 178 RREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFD 237
Query 439 IATVKHNLEELEQVVY------KPQKFFRKVESRISDKFKYIIAQLMRD-----TESLAK 487
T + + VY P++ + I ++ + +AQL+ D + L +
Sbjct 238 PLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQ 297
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE--------ESRICKALF 539
R DLE L ++ G + Y + + + D ES +
Sbjct 298 RTRFDLEMLQELG-FCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQL 356
Query 540 LYTSHLRKYNDALIISEHARMKDALD----YLKDFFSNVRAAGF-DEIEQDLTQRFEEKL 594
+ ++ R+ ALD L++F + +R F Q + +
Sbjct 357 GGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNV 416
Query 595 QE-------LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
E L + + +++DL + + L ++ T+ + + L +++
Sbjct 417 VEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQE--RVLVTTLTKRMAEDLTDFL 474
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+ ++ L ++ + + I+ + G ++L+ ++ EG+DI
Sbjct 475 SEH----GVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREGLDIP 521
Query 708 QCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ +LV + + + +IQT GR R + L + I+ + +
Sbjct 522 EVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRA 581
Query 762 ND 763
Sbjct 582 KQ 583
>sp|Q6DRI7|DDX51_DANRE ATP-dependent RNA helicase DDX51 OS=Danio
rerio OX=7955 GN=ddx51 PE=2 SV=1
Length=652
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/116 (20%), Positives = 37/116 (32%), Gaps = 15/116 (13%)
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
+ F +R L +L + G ++ ++ ++ L F G
Sbjct 493 ALCFTNSREGAHRL-----------YLLVKLFGGVEVAEFSSKLSPGERQKTLKDF-EKG 540
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLT 742
+LI+T A GIDI VI Y+ I + R G L
Sbjct 541 KIPLLISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFLL 596
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (44%), Gaps = 9/121 (7%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
+ APTG GKT ++ L K Q + + + +Q +VFS Y E +V
Sbjct 245 VSAPTGSGKTLAFVIPVVQALSKRVVRQV-RALAVLPTKELAQQVSNVFSAYTEGSSLKV 303
Query 322 TGISGA---TAENVPVEQIVENN-----DIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
I+G AE + +I DI++ TP LV+++ K + SL +I DE
Sbjct 304 VMITGQKSFAAEQTALSEIRGGVSHSMADIVVATPGRLVDHINKNSSFSLQHLRFLIIDE 363
Query 374 C 374
Sbjct 364 A 364
>sp|A7TLA0|SUB21_VANPO ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=SUB2-1 PE=3 SV=1
Length=441
Score = 69.0 bits (167), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/154 (20%), Positives = 55/154 (36%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
EN K L +L + I+FVK+ + L + +
Sbjct 284 QENEKNRKLAQLLDDLEF----NQVIIFVKSTKRANELTKLL-NESNFPAITVH------ 332
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + +
Sbjct 333 -----GHMKQAERIARYKAFKEF-EKRICVSTDVFGRGIDIERINLAINYDLTTEADQYL 386
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E + +E+
Sbjct 387 HRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQER 420
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 49/138 (36%), Gaps = 9/138 (7%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 79 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVS--VVVICNARE 136
Query 302 VYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK 356
+ Q + + G T N E +++N + I++ TP L L
Sbjct 137 LAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAE-LLKNKETAPHIVVATPGRL-KALV 194
Query 357 KGTIPSLSIFTLMIFDEC 374
+ + LS + DEC
Sbjct 195 RDKLIDLSHVKNFVIDEC 212
>sp|Q4WQM4|HAS1_ASPFU ATP-dependent RNA helicase has1 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=has1 PE=3 SV=2
Length=622
Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/198 (20%), Positives = 73/198 (37%), Gaps = 13/198 (7%)
Query 183 SELWIVEKG-IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF 241
SE + G KD E+ DL S + + E Q +E + N
Sbjct 106 SEAENGDNGDKKDTESTDLPSAGTLSLPTV----EGEPQKFTELGLSEKTLKAINDMGFE 161
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFAN 298
Q P + G++ + A TG GKT + + L+ P+ G +V +
Sbjct 162 TMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIV-VSP 220
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK- 357
+ Q V + + H + G E++++ +++I TP L+++L+
Sbjct 221 TRELALQIFGVARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNT 280
Query 358 -GTIPSLSIFTLMIFDEC 374
G + ++ DE
Sbjct 281 QGFVFK--NLKTLVIDEA 296
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/221 (18%), Positives = 77/221 (35%), Gaps = 35/221 (16%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP- 609
L+I+ R+ D L + F F N++ DE ++ L FE++++++ + +
Sbjct 265 LLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTML 324
Query 610 -------KLEDLCFI-------------LQEEYHLNPETITILFVKTRALVDALKNWIEG 649
K+EDL I +E + + + L ++++
Sbjct 325 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 384
Query 650 NPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCILDAFKA-SGDHNILIAT 697
N K + + + + QK F+ + LI T
Sbjct 385 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICT 444
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
VA G+DI + +I ++ + I GR R +K
Sbjct 445 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTNAK 485
>sp|P9WMR1|HELY_MYCTU Probable helicase HelY OS=Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=helY PE=1
SV=1
Length=906
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/136 (20%), Positives = 54/136 (40%), Gaps = 15/136 (11%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT + K +
Sbjct 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKT-----VVGEFAVHLALAAGSKCFYTTPL 69
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q+ + + + R ++ ++G + N N ++++T ++L N L
Sbjct 70 KALSNQKHTDLTARYGRD--QIGLLTGDLSVN-------GNAPVVVMTTEVLRNML-YAD 119
Query 360 IPSLSIFTLMIFDECH 375
P+L + ++ DE H
Sbjct 120 SPALQGLSYVVMDEVH 135
>sp|P9WMR0|HELY_MYCTO Probable helicase HelY OS=Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=helY PE=3
SV=1
Length=906
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/136 (20%), Positives = 54/136 (40%), Gaps = 15/136 (11%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT + K +
Sbjct 15 PFSLDDFQQRACSALERGHGVLVCAPTGAGKT-----VVGEFAVHLALAAGSKCFYTTPL 69
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q+ + + + R ++ ++G + N N ++++T ++L N L
Sbjct 70 KALSNQKHTDLTARYGRD--QIGLLTGDLSVN-------GNAPVVVMTTEVLRNML-YAD 119
Query 360 IPSLSIFTLMIFDECH 375
P+L + ++ DE H
Sbjct 120 SPALQGLSYVVMDEVH 135
>sp|Q94C75|RH25_ARATH DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis
thaliana OX=3702 GN=RH25 PE=2 SV=2
Length=563
Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/367 (15%), Positives = 123/367 (34%), Gaps = 56/367 (15%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L + +++ + + + + + R+ ++N S R G +
Sbjct 179 LLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVK- 237
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
++ + +A + M + E RI A+ A + E ++
Sbjct 238 ----VLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFS--ATVSDEVRQICHVALKRD 291
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
F N G E Q ++Q + ++ + L +L++ N
Sbjct 292 HEFVNCVQEGAGETHQKVSQMYMI------------ASLDRHFSLLYGLLKKHITDNVGY 339
Query 629 ITILFVKT----RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
I+F T R + D L ++ KP + + D
Sbjct 340 KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKP----------------QSYRTRVSDE 383
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
F+ S IL+ + V+ G+D +LV+ + + I GR GR + + LL
Sbjct 384 FRKSKSI-ILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLL 442
Query 743 SN------AGVIEKEQINMYKEKMMNDSILRLQ--------TWDEAVFREKILHIQTHEK 788
+ + V + + ++++ ++Q T EA ++ + + ++ +K
Sbjct 443 APWEEYFLSSVKDLPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEAAYQAWLGYYKSQKK 502
Query 789 FIRDSQE 795
RD+
Sbjct 503 IARDTTR 509
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/394 (15%), Positives = 123/394 (31%), Gaps = 40/394 (10%)
Query 255 MKGKNTIICAPTGCGKTFVSLLI--CEHHLKKFPQGQKGK-----VVFFANQIPVYEQQK 307
++GK+ + A TG GKT V+ L+ E +K P + + V+ + Q
Sbjct 115 LQGKDILAKAKTGTGKT-VAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAA 173
Query 308 S----VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN--NLKKGTIP 361
+ + + V G + E +++ I++ TP L + + G
Sbjct 174 AEANILLKYHPSIGVQVVIGGTKLPTEQRRLQK--SPCQILVATPGRLKDHIDNTSGFAT 231
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
L +++ DE + I +++ + Q +A+V
Sbjct 232 RLMGVKVLVLDEADHLLDMGFRREI------ERIIAAVPKQRQTFLFSATV--------S 277
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
+ + IC + D + V+ E Q V Q + R ++ + + D
Sbjct 278 DEVRQICHVALKRDHEFVNCVQEGAGETHQKVS--QMYMIASLDRHFSLLYGLLKKHITD 335
Query 482 TESLAKRICKDLENLSQIQNREFGTQKY---EQWIVTVQKACMVFQMPDKDEESRICKAL 538
I ++++ G E Q + +S I
Sbjct 336 NVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTS 395
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ + Y D ++ + D Y+ R E L E L ++
Sbjct 396 DVSARGV-DYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEGVLLLAPWEEYFLSSVK 454
Query 599 SV----SRDPSNENPKLEDLCFILQEEYHLNPET 628
+ S P ++ ++ + L + N E
Sbjct 455 DLPITKSSLPPIDHEAVKKVQKGLIQVEMTNKEA 488
>sp|A4QX49|DBP7_PYRO7 ATP-dependent RNA helicase DBP7 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=DBP7 PE=3 SV=1
Length=825
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 55/150 (37%), Gaps = 10/150 (7%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + P + LD+F S D +ILI T ++ G+D+ +LVI Y+ V + G
Sbjct 519 HGSLAQPVRTATLDSFSKSKDPSILITTDISSRGLDVPAVDLVIEYDPAFAVADHVHRIG 578
Query 730 R-GRA-RGSKCFLLTSNAGV-----IEKEQINMYKEKMMNDSILRL---QTWDEAVFREK 779
R RA R K L + ++ + + DS+L+ D
Sbjct 579 RTARAGRPGKAVLFLQPGSEEGYVGLLQKNASTALTPQLYDSVLQAGFSSNIDLPPVTAT 638
Query 780 ILHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
Q E+ + K E +L
Sbjct 639 NEDGQDTEQQKQLDSRKQTWTSRAEALQLH 668
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 17/125 (14%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKV----------------VFFANQIPVYEQQKSV 309
TG GKT LL + + Q + G + + A + +Q +V
Sbjct 179 TGSGKTLAYLLPIVNRILALNQNEDGTISKDASKKIHRNSGLLAIVLAPTRELCKQIATV 238
Query 310 FSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
K T + G +++ +I + +I+I TP L ++L + +S+
Sbjct 239 LEKLLRCAPWIVSTTVIGGESKHSEKARIRKGINILIATPGRLKDHLDNTKVLDVSLARW 298
Query 369 MIFDE 373
+I DE
Sbjct 299 LILDE 303
>sp|Q8Y0N2|UVRB_RALN1 UvrABC system protein B OS=Ralstonia nicotianae
(strain GMI1000) OX=267608 GN=uvrB PE=3 SV=1
Length=696
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 94/636 (15%), Positives = 186/636 (29%), Gaps = 138/636 (22%)
Query 221 NLSENSCPPSEV-------SDTNLYSPFKPRNYQLELALPAMKG-------KNTIICAPT 266
+LS+ P E S LY P+ P Q E ++G + + T
Sbjct 3 DLSQVPSPYDESKFVTFDGSPFQLYQPYPPAGDQPEAIRQLVEGIGDGLSYQTLLGV--T 60
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGK-VVFFANQIPVYEQQKSVFSKYFERHGYRVTG-- 323
G GKT+ + Q G+ + FA + Q S F ++F R+
Sbjct 61 GSGKTYTMANVI---------AQAGRPAIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSY 111
Query 324 ----------------ISGATAENVPVEQ--------IVENNDI-IILT----------- 347
I ++ N +EQ ++E D+ I+ T
Sbjct 112 YDYYQPEAYVPQRDLFIEKDSSVNEHIEQMRLSATKSLLERRDVVIVATVSAIYGIGNPT 171
Query 348 --PQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 405
Q+++ L+ G +S + ++ + +V
Sbjct 172 EYHQMILT-LRTG--DKISQ--------------RDVIARLIAMQYTRNETDFQRGTFRV 214
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
G T + + L+ SL T + + L VY P +
Sbjct 215 RGDTVDIFPAEHAEMAVRLELFDDEVDSLQLFDPLTGRVRQKILRFTVY-PSSHYVTPRE 273
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVF 523
+ I A+L R+ + K +E Q F + ++ + ++
Sbjct 274 TVLRAIGTIKAEL-RERLDFFYQENKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHL 332
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN--VRAAGFDE 581
E + + ++I + M + K+ S R +
Sbjct 333 SGAQPGEPPPTLVDYLPSDALMFLDESHVLIGQLNGMYNGDRARKETLSAYGFRLPSALD 392
Query 582 IEQDLTQRFEEKLQELESVSRDPSN--------------------------ENPKLEDLC 615
FE K++++ VS P++ P +
Sbjct 393 NRPLKFAEFEGKMRQVVFVSATPADYEKQRAGDEVVEQVVRPTGLVDPIIHVRPATTQVD 452
Query 616 FILQE-EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L E + ++ T+ + + L ++ N G ++ +
Sbjct 453 DLLSEIHERVKAGERVLVTTLTKRMAEQLTEFLSEN------------GVKVRYLHSDID 500
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRG 729
+ I+ + G ++L+ ++ EG+DI + +LV + + +IQT G
Sbjct 501 TVERVEIIRDLRL-GTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIG 559
Query 730 R-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
R R L I + E +
Sbjct 560 RAARNVNGTAIL---YGDRITESMKKAIGETERRRA 592
>sp|Q8N8A6|DDX51_HUMAN ATP-dependent RNA helicase DDX51 OS=Homo
sapiens OX=9606 GN=DDX51 PE=1 SV=3
Length=666
Score = 69.4 bits (168), Expect = 8e-11, Method: Composition-based stats.
Identities = 34/201 (17%), Positives = 62/201 (31%), Gaps = 27/201 (13%)
Query 604 PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTG 663
P + + K + ++ E + + F +R N FL G
Sbjct 485 PCSLSSKPLVVLHLVLEMGF----SRVLCFTNSR-----------ENSHRLFLLVQAFGG 529
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GN 720
++ ++ IL F G +LI+T GID+ LV+ Y+
Sbjct 530 VDVAEFSSRYGPGQRRMILKQF-EQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRT 588
Query 721 VIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK---MMNDSILRLQTWDE--AV 775
+ + R G LL V E+ + M E + L +
Sbjct 589 YVHRVGRTARAGKTGQAFTLLL---KVQERRFLRMLTEAGAPELQRHELSSKLLQPLVPR 645
Query 776 FREKILHIQTHEKFIRDSQEK 796
+ E + ++ K R +
Sbjct 646 YEEALSQLEESVKEERKQRAA 666
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 45/227 (20%), Positives = 86/227 (38%), Gaps = 35/227 (15%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
+ APTG GKT ++ L + + + +Q VF+ Y + RV
Sbjct 254 VSAPTGSGKTLAFVIPVVQALLSRVVCHI-RALVVLPTKELAQQVSKVFNIYTDATPLRV 312
Query 322 TGISGATAENVPVEQIVENN--------DIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ ++G + E +V+ DI++ TP LV+++ + SL +I DE
Sbjct 313 SLVTGQKSLAKEQESLVQKTADGYRCLADIVVATPGRLVDHIDQTPGFSLQQLRFLIIDE 372
Query 374 CHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT------ASVGVGDAKNTDEALDYI 427
M + + Q LP+V+ A + +A+
Sbjct 373 ADR----------MIDSMHQ------SWLPRVVAAAFQSEDPADPCALLQRRQAQAVTAA 416
Query 428 CKLCASLDASVI---ATVKHNLEELEQV-VYKPQKFFRKVESRISDK 470
C + + AT+ N E+L+Q+ +++P+ F + R +
Sbjct 417 STCCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLED 463
>sp|C3LR47|RAPA_VIBCM RNA polymerase-associated protein RapA OS=Vibrio
cholerae serotype O1 (strain M66-2) OX=579112 GN=rapA
PE=3 SV=1
Length=969
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 70/472 (15%), Positives = 151/472 (32%), Gaps = 61/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYR-- 320
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLTGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
V S A + ++ + D + + Q L+ L++ DE H+ +
Sbjct 236 VEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW-------DLLVVDEAHH-LEW 287
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
HP Y Q + + P V+ LTA+ ++ + +L LDA
Sbjct 288 HP-EKPSREY--QVIEALAEQTPGVLLLTATPEQLGRES------HFARL-RLLDADRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+ ++E EQ ++SD+ K I +L+ +E + + K LE+ +
Sbjct 338 DYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKITELL--SEQDVEPLFKALESHASE 395
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
Q+ ++ V + + ++ L I S++
Sbjct 396 DEIALARQELIDNLMDRHGTGRVL-FRNTRAAIKGFPVRNVHLLPL------EIPSQYTT 448
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L + A +++ Q FE + + + L
Sbjct 449 SMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE-----------GEESSWWQFDSRVNWLL 497
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
E+ ++ + L+ + ++ + + GM++ +
Sbjct 498 EKVKAKRSEKILVIASRASTALQLEQALRER---EGIRATVF--------HEGMSIIERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 547 KAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|Q9KP70|RAPA_VIBCH RNA polymerase-associated protein RapA OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) OX=243277 GN=rapA PE=3 SV=1
Length=969
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 70/472 (15%), Positives = 151/472 (32%), Gaps = 61/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYR-- 320
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLTGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
V S A + ++ + D + + Q L+ L++ DE H+ +
Sbjct 236 VEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW-------DLLVVDEAHH-LEW 287
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
HP Y Q + + P V+ LTA+ ++ + +L LDA
Sbjct 288 HP-EKPSREY--QVIEALAEQTPGVLLLTATPEQLGRES------HFARL-RLLDADRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+ ++E EQ ++SD+ K I +L+ +E + + K LE+ +
Sbjct 338 DYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKITELL--SEQDVEPLFKALESHASE 395
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
Q+ ++ V + + ++ L I S++
Sbjct 396 DEIALARQELIDNLMDRHGTGRVL-FRNTRAAIKGFPVRNVHLLPL------EIPSQYTT 448
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L + A +++ Q FE + + + L
Sbjct 449 SMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE-----------GEESSWWQFDSRVNWLL 497
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
E+ ++ + L+ + ++ + + GM++ +
Sbjct 498 EKVKAKRSEKILVIASRASTALQLEQALRER---EGIRATVF--------HEGMSIIERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 547 KAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|A7TEG8|MAK5_VANPO ATP-dependent RNA helicase MAK5 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=MAK5 PE=3 SV=1
Length=763
Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 79/256 (31%), Gaps = 35/256 (14%)
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
+ + + +A + Q DE I K L + + RK+N +I D D L
Sbjct 344 SQISTLVLDEADRLLQDGHFDEFENILKYLGRESKN-RKHNWQTMIFSATFATDLFDKLS 402
Query 569 DFF---SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+ +E+E L + + + + D + E+ + L E
Sbjct 403 HASWKNMKTPSKNENEMEIVLKHLMTKIHFKSKPILIDANPEDKVSSQIKESLIECAATE 462
Query 626 PE-----------TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+ T++F V L ++ L MT
Sbjct 463 RDLFCYYFVSMYPGKTLIFCNAIDSVKKLTAYLNN------LNISCFQIHSS------MT 510
Query 675 LPAQKCILDAFKASGDHN-------ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ L+ ++ + N +L+ + VA G+DI VI Y I
Sbjct 511 QKNRLRNLERYQQQSEKNKILGKPTVLVGSDVAARGLDIPGIQHVIHYHLPRTADVYIHR 570
Query 728 RGR-GRARGSKCFLLT 742
GR RA ++
Sbjct 571 SGRTARANNEGVSVMI 586
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 84/257 (33%), Gaps = 25/257 (10%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q E A+KG++ + A TG GKT + L K + F + +Q
Sbjct 219 QEEAIPMALKGEDIMGKASTGSGKTLAYGIPIIEKLMKSKSNTAPIGLIFTPTRELAKQV 278
Query 307 KSVFSK----YFERHGYRVTGISGATAENVPVEQIVE---NNDIIILTPQILVNNLKKG- 358
K ++ + + ++G + E++++ + I++ TP + ++K
Sbjct 279 TDHLRKIASLIVDKSPHAILSLTGGLSIQKQ-ERLLKYEGSGRIVVATPGRFLELIEKDK 337
Query 359 -TIPSLSIFTLMIFDECHNTSKQ---HPYNMIMFNYLDQKLGGSSGPLPQVIGLT----- 409
+ S + ++ DE + + I+ + + T
Sbjct 338 TLVERFSQISTLVLDEADRLLQDGHFDEFENILKYLGRESKNRKHNWQTMIFSATFATDL 397
Query 410 ------AS-VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRK 462
AS + + ++ + K + + + ++V + ++ +
Sbjct 398 FDKLSHASWKNMKTPSKNENEMEIVLKHLMTKIHFKSKPILIDANPEDKVSSQIKESLIE 457
Query 463 VESRISDKFKYIIAQLM 479
+ D F Y +
Sbjct 458 CAATERDLFCYYFVSMY 474
>sp|Q32K36|RAPA_SHIDS RNA polymerase-associated protein RapA OS=Shigella
dysenteriae serotype 1 (strain Sd197) OX=300267 GN=rapA
PE=3 SV=1
Length=968
Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats.
Identities = 65/522 (12%), Positives = 154/522 (30%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I +P + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSPDFVRRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B0SLS0|UVRB_LEPBP UvrABC system protein B OS=Leptospira biflexa
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) OX=456481
GN=uvrB PE=3 SV=1
Length=664
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 215/644 (33%), Gaps = 116/644 (18%)
Query 232 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAP-TGCGKTFVSLLICEHHLKKFP 286
+++ + SPFK Q++ K GKN I TG GKTF +
Sbjct 1 MANFKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITR------ 54
Query 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV------------------TGISGAT 328
K + ++ + Q F ++F + T I
Sbjct 55 --VKKPTLILSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDM 112
Query 329 AENVPVEQI--------VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ N ++++ +E +D+II++ + L S+ L + D+
Sbjct 113 SMNEEIDKLRLRATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVMLQVGDKIDR---- 168
Query 381 HPYNMIMFNYLDQKLGGS----SGPLPQVIGLTASVGVG------DAKNTDEALDYICKL 430
+ I+ +L + + S +V G T + + + +D + K+
Sbjct 169 ---DQIIRKFLHIQYARNDIDFSRGNFRVRGDTIEIMPSYQEEGIRIELFGDEIDGLSKI 225
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC 490
I L++VV P K F +I D + I ++ E K+
Sbjct 226 DPLTGKVKIK--------LDRVVVYPAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQ-G 276
Query 491 KDLENLSQIQNREF------------GTQKYEQWIVTVQK----ACMVFQMPDKD----- 529
K LE + G + Y + + + AC++ P KD
Sbjct 277 KHLEAERIESRTNYDMEMLLELGYCSGIENYSRHLTGRAEGERPACLLDYFPGKDFLLII 336
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA---------AGFD 580
+ES + + ++ R+ ALD F+ A A D
Sbjct 337 DESHVTLPQIGGMYAGDRSRKQTLVEFGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPD 396
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE-EYHLNPETITILFVKTRAL 639
+ E + ++ E++ + P + +L E +N + ++ T+ +
Sbjct 397 QNELNKSEAVFEQIIRPTGLLDPVVEVRPTTNQIEDLLNEIRLRINQKERVLITTLTKKM 456
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ L ++ + G ++ + + I+ + G ++ ++ ++
Sbjct 457 SEDLTDYYKE------------VGLKIAYLHSEIDTIERTEIIRDLR-KGVYDCIVGINL 503
Query 700 ADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQ 752
EG+DI + +LV + + N ++QT GR R K L I+K
Sbjct 504 LREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAM 563
Query 753 INMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ +++ ++ +++I I E DS+E+
Sbjct 564 SETERRRLIQEAHNEKMGITPQTIQKEIHDILPREMAEEDSKEE 607
>sp|B0SDE2|UVRB_LEPBA UvrABC system protein B OS=Leptospira biflexa
serovar Patoc (strain Patoc 1 / Ames) OX=355278 GN=uvrB
PE=3 SV=1
Length=664
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 215/644 (33%), Gaps = 116/644 (18%)
Query 232 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAP-TGCGKTFVSLLICEHHLKKFP 286
+++ + SPFK Q++ K GKN I TG GKTF +
Sbjct 1 MANFKMVSPFKAAGDQVKAIENIAKSFGEGKNKITLVGVTGSGKTFTMAEVITR------ 54
Query 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV------------------TGISGAT 328
K + ++ + Q F ++F + T I
Sbjct 55 --VKKPTLILSHNKTLAAQLFREFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDM 112
Query 329 AENVPVEQI--------VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ N ++++ +E +D+II++ + L S+ L + D+
Sbjct 113 SMNEEIDKLRLRATSSLLERDDVIIVSSVSCIYGLGSPEDYMNSVVMLQVGDKIDR---- 168
Query 381 HPYNMIMFNYLDQKLGGS----SGPLPQVIGLTASVGVG------DAKNTDEALDYICKL 430
+ I+ +L + + S +V G T + + + +D + K+
Sbjct 169 ---DQIIRKFLHIQYARNDIDFSRGNFRVRGDTIEIMPSYQEEGIRIELFGDEIDGLSKI 225
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC 490
I L++VV P K F +I D + I ++ E K+
Sbjct 226 DPLTGKVKIK--------LDRVVVYPAKHFITSGPKIKDAMEKIKEEMAAQKEYFLKQ-G 276
Query 491 KDLENLSQIQNREF------------GTQKYEQWIVTVQK----ACMVFQMPDKD----- 529
K LE + G + Y + + + AC++ P KD
Sbjct 277 KHLEAERIESRTNYDMEMLLELGYCSGIENYSRHLTGRAEGERPACLLDYFPGKDFLLII 336
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA---------AGFD 580
+ES + + ++ R+ ALD F+ A A D
Sbjct 337 DESHVTLPQIGGMYAGDRSRKQTLVEFGFRLPSALDNRPLNFTEFEAMTPRTLYVSATPD 396
Query 581 EIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE-EYHLNPETITILFVKTRAL 639
+ E + ++ E++ + P + +L E +N + ++ T+ +
Sbjct 397 QNELNKSEAVFEQIIRPTGLLDPVVEVRPTTNQIEDLLNEIRLRINQKERVLITTLTKKM 456
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ L ++ + G ++ + + I+ + G ++ ++ ++
Sbjct 457 SEDLTDYYKE------------VGLKIAYLHSEIDTIERTEIIRDLR-KGVYDCIVGINL 503
Query 700 ADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQ 752
EG+DI + +LV + + N ++QT GR R K L I+K
Sbjct 504 LREGLDIPEVSLVAILDADKEGFLRNYKSLVQTIGRAARNVNGKAILYADRMTDSIKKAM 563
Query 753 INMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ +++ ++ +++I I E DS+E+
Sbjct 564 SETERRRLIQEAHNEKMGITPQTIQKEIHDILPREMAEEDSKEE 607
>sp|A5DDN0|SUB2_PICGU ATP-dependent RNA helicase SUB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SUB2 PE=3
SV=3
Length=432
Score = 69.0 bits (167), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 59/160 (37%), Gaps = 20/160 (13%)
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ D +N KL DL L I+FVK+ + + L +
Sbjct 272 LKLDEKEKNRKLADLLDSL-------EFNQVIIFVKSTSRANELNKLL------------ 312
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ + ++ M + +FK + I ++T V GIDI + NL I Y+
Sbjct 313 VASNFPSIAVHSAMPQEERIARYKSFKEF-NKRICVSTDVFGRGIDIERINLAINYDLPN 371
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ + GR G+K ++ ++E + + +
Sbjct 372 EADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSR 411
Score = 42.5 bits (98), Expect = 0.015, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 53/140 (38%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P V+ +
Sbjct 70 HPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVI--CHTRE 127
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY V G +E+ ++N D I++ TP L +
Sbjct 128 LAYQIRNEYARFSKYMPDVKTEV--FYGGIPIAKDIEK-LKNKDTCPHIVVATPGRL-HA 183
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + L+ + DEC
Sbjct 184 LVEEKAIRLNNVKSFVIDEC 203
>sp|Q6FL17|SUB2_CANGA ATP-dependent RNA helicase SUB2 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SUB2 PE=3 SV=1
Length=439
Score = 69.0 bits (167), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 58/154 (38%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L + I+FVK+ + + L + + +
Sbjct 282 EEREKNRKLAQLLDDLEF----NQVIIFVKSTSRANELTKLLNAS-NFPAITVH------ 330
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
M + AFK + I ++T V GIDI + NL I Y+ + + +
Sbjct 331 -----GHMKQEERIARYKAFK-DFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYL 384
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
GR G+K ++ + ++E ++ +E+
Sbjct 385 HRVGRAGRFGTKGLAISFVSNKEDEEVLSKIQER 418
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 64/384 (17%), Positives = 126/384 (33%), Gaps = 46/384 (12%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P VV N
Sbjct 77 HPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVS--VVVICNARE 134
Query 302 VYEQ-QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK 356
+ Q + R G T ++++N D I++ TP L L
Sbjct 135 LAYQIRNEYLRFSKYMPDVRTAVFYGGT-PIAKDAELLKNKDTAPHIVVATPGRL-KALV 192
Query 357 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + LS + DEC + ++ + + + A+
Sbjct 193 RDKMIDLSHVKNFVIDEC---------DKVLEEL---DMRRDVQEIFR-----ATPRDKQ 235
Query 417 AKNTDEAL-DYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
L I +C + + + +L ++ Q+++ K+E R + +
Sbjct 236 VMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLT--LHGLQQYYIKLEER---EKNRKL 290
Query 476 AQLMRDTE-----SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
AQL+ D E K + E + F + ++ D ++
Sbjct 291 AQLLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEK 350
Query 531 ESRICKALFLYTSHLRKYNDAL---IISEHARMKDALDYLKDFFSNVRAAGF------DE 581
+ +F + + N A+ +++E + + F + A F +E
Sbjct 351 RICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEE 410
Query 582 IEQDLTQRFEEKLQELESVSRDPS 605
+ + +RF+ K+ E DPS
Sbjct 411 VLSKIQERFDVKIAEFPEEGIDPS 434
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia
coli (strain K12) OX=83333 GN=mfd PE=1 SV=2
Length=1148
Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 73/344 (21%)
Query 167 WPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENS 226
W + + A EK R+ +EL ++ + E K + Q+F P +
Sbjct 550 WSRARQKAAEKVRDVAAEL--LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607
Query 227 CPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL----LICEHHL 282
+ +SD + P + ++C G GKT V++ L ++H
Sbjct 608 AINAVLSD---------------MCQPLAMDR--LVCGDVGFGKTEVAMRAAFLAVDNH- 649
Query 283 KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG----ATAENVPVEQIV 338
+V + +Q F F R+ IS + E
Sbjct 650 --------KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701
Query 339 ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 398
DI+I T ++L +++K L+I DE H F ++ +
Sbjct 702 GKIDILIGTHKLLQSDVK------FKDLGLLIVDEEHR-----------FGVRHKERIKA 744
Query 399 SGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 458
++ LTA+ + D S+IAT ++ V
Sbjct 745 MRANVDILTLTATPIPRTLNMAMSGM---------RDLSIIATPPARRLAVKTFV----- 790
Query 459 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNR 502
R+ +S + + I+ +++R + + D+EN+ + R
Sbjct 791 --REYDSMVVRE--AILREILRGGQ--VYYLYNDVENIQKAAER 828
Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 35/78 (45%), Gaps = 5/78 (6%)
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI--LYEYVGNVIKMIQ 726
+ M + +++ F N+L+ T++ + GIDI N +I + + ++ Q
Sbjct 841 GHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIIIERAD-HFGLAQLHQ 898
Query 727 TRGR-GRARGSKCFLLTS 743
RGR GR+ L +
Sbjct 899 LRGRVGRSHHQAYAWLLT 916
>sp|Q9D0R4|DDX56_MOUSE Probable ATP-dependent RNA helicase DDX56
OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
Length=546
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 10/169 (6%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
QE +++ + V+D +P Q + A++GK+ + A TG GKT
Sbjct 3 DQEALGFEHMGLDPRLLQAVTD---LGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTA 59
Query 273 VSLLICEHHLKKFPQG-----QKGKVVFFANQIPVYEQQKSVFSKYFERHG--YRVTGIS 325
+ L Q + + + Q +++ + RV +S
Sbjct 60 AYAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVRVANVS 119
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
A ++E D+++ TP ++++L++ T+ L++ DE
Sbjct 120 AAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLKLRDSLELLVVDEA 168
Score = 48.6 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 54/331 (16%), Positives = 99/331 (30%), Gaps = 72/331 (22%)
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKAC 520
+ V + K + Q + LA +D+ ++ N Q V ++K
Sbjct 81 QAVRGLVLVPTKELARQAQAMIQQLAAYCARDV----RVANVSAAEDSASQRAVLMEKPD 136
Query 521 MVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE---------HARMKDALDYL---- 567
+V P SR+ L T LR + L++ E +K L +L
Sbjct 137 VVVGTP-----SRVLSHLQQNTLKLRDSLELLVVDEADLLFSFGFEDELKSLLCHLPRIY 191
Query 568 KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 627
+ F + + ++L L+ ES P + + +C ++++ L
Sbjct 192 QAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQ-QFQVVCETEEDKFLLLYA 250
Query 628 --------TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+LFV T +E +L N + L ++
Sbjct 251 LLKLSLIRGKALLFVNT----------LERGYRLRLFLEQFSI--PSCVLNGELPLRSRC 298
Query 680 CILDAFKASGDHNILIATSV---------------------------ADEGIDIAQCNLV 712
I+ F G ++ +IAT GID + V
Sbjct 299 HIISQF-NQGLYDCVIATDAEILGPQVKGKRRGRGSKGNKASDPESGVARGIDFHHVSAV 357
Query 713 ILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ ++ + GR RA L
Sbjct 358 LNFDLPPTAEAYVHRAGRTARANNPGIVLTF 388
>sp|O74393|MAK5_SCHPO ATP-dependent RNA helicase mak5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=mak5
PE=1 SV=1
Length=648
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/116 (22%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
T++F + +++ P L+ LK + + + L+ FK
Sbjct 390 GKTMVF------ANGIEDIKRITPFLNELKV------PSYPLHAQLDQKKRLQSLEKFKN 437
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ +L+ T VA GIDI VI Y + GR RA +L
Sbjct 438 N-PKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILM 492
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 65/192 (34%), Gaps = 10/192 (5%)
Query 193 KDVETEDLEDKMET---SDIQIFYQEDPECQNLSENSC------PPSEVSDTNLYSPFKP 243
+E L K+ + ++ +ED + + S P + + KP
Sbjct 86 PTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAWAHFSLSPEMLGSLSKAGFSKP 145
Query 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + A G + I A TG GKT + H + + + + A +
Sbjct 146 MPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELA 205
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP-S 362
Q F RV I+G A + ++ +++ TP L + + + + +
Sbjct 206 HQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGN 265
Query 363 LSIFTLMIFDEC 374
++ DE
Sbjct 266 FKKIKCLVLDEA 277
>sp|A3LSJ2|DBP6_PICST ATP-dependent RNA helicase DBP6 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP6 PE=3 SV=2
Length=591
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 40/227 (18%), Positives = 68/227 (30%), Gaps = 15/227 (7%)
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
C+ L N A + L + A F + + +
Sbjct 326 QNWCQVLISSLEG--DVNIAEEWKITPQKLIFSATLTTDSGKLSALKFQKPRLVIVNDRK 383
Query 592 EKLQELESVSRDPSN-----ENPKLEDLCFILQEEY-HLNPETITILFVKTRALVDALKN 645
+ + E+ +V S K IL + N + ++F K+ L
Sbjct 384 QLVNEIFNVPSSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCK 443
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+E I N++ + IL F ++ NIL+AT + GID
Sbjct 444 LLELMFGKLHPSMNIAYINSTNNKSA-----IRTKILKDF-STQKINILVATDLIARGID 497
Query 706 IAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKE 751
I VI Y+ + + + GR RA + K
Sbjct 498 ILSITDVINYDLPNSSREYVHRVGRTARANQTGHAYTLCFGKGEAKW 544
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/117 (20%), Positives = 46/117 (39%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L + + + P+ Q K+ F +
Sbjct 203 DILVNAATGSGKTLAYSIPIIEALHNRVVPRV-RAIVLVPTKPLINQVKATFVQLSRGTN 261
Query 319 YRVTGISGATA-ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V + + + ++ + DII+ TP LV ++ +I L+ ++ DE
Sbjct 262 LSVVSLRNDVSIKEEGIKIVNSPPDIIVSTPGRLVEHISNKSIN-LNSLQFLVIDEA 317
>sp|Q4HZ68|DBP7_GIBZE ATP-dependent RNA helicase DBP7 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP7 PE=3 SV=1
Length=744
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 48/294 (16%), Positives = 97/294 (33%), Gaps = 45/294 (15%)
Query 576 AAGFDEIEQDLTQRFEEKLQELESV-SRDPSNENPKLEDLCFILQEEYHLNPET-ITILF 633
AA +++E D+ + + +L S P+ +L L L+ + +T I+F
Sbjct 383 AAKKEDMELDVQKSEMKAPAQLHQYYSVVPAKL--RLVTLISYLKSTFSRRGKTMKAIIF 440
Query 634 VKTRALVDALKNWIEGNPKL---------------SFLKPGILTGRGKTNQ------NTG 672
+ VD + +P + + + +
Sbjct 441 ISCADSVDFHYELLR-DPNTTEAPVAASKEAESISKTVSKAAYITSPASPEVVLHRMHGS 499
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
++ P + L +F A ++LI T V+ G+DI +LVI Y+ + I GR
Sbjct 500 LSQPIRTATLKSFSACKSPSLLITTDVSSRGLDIPSVDLVIEYDPAFSFADHIHRVGRTA 559
Query 732 RA--------------RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 777
RA L+ + + ++ ++ MM ++T +
Sbjct 560 RAGKPGDALLFLLPGTEEGYIELMKGSTTPTSQSYDSILQKGMMTKLEFPVETTAKPEDG 619
Query 778 EKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHY 831
H + + Q + + D + +L K+ A E H+
Sbjct 620 HS-FHDKAESLQLHIEQ---RLLEDTKRLELARNGFKSHIRAYATHTKEERKHF 669
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 47/121 (39%), Gaps = 9/121 (7%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--------VFFANQIPVYEQQKSVFSKY 313
+ A TG GKT LL H + ++ + A + +Q +V K
Sbjct 193 VQAETGSGKTLAYLLPILHRVLLLSVKGGAQIHRDSGAFAIIVAPTRELAKQVHTVLEKL 252
Query 314 F-ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
T I+G ++ +I + + ++ TP L +++ +LSI +I D
Sbjct 253 IRPFPWLVSTAITGGESKKAEKARIRKGVNFLVATPGRLADHIDNTKALNLSIVRWLILD 312
Query 373 E 373
E
Sbjct 313 E 313
>sp|A5DGM4|SPB4_PICGU ATP-dependent rRNA helicase SPB4 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=SPB4 PE=3
SV=2
Length=601
Score = 69.4 bits (168), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/175 (20%), Positives = 68/175 (39%), Gaps = 16/175 (9%)
Query 598 ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK 657
+S++ + NP E +L I++ T A V + + L +
Sbjct 240 QSLTVNYMMVNP--ETKIAVLINMLSTLQYKKCIVYFPTCASVKYFYSVFQKLHPLEDV- 296
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH----NILIATSVADEGIDIAQCNLVI 713
T+ + + A+ ++ F GD ++L+ T VA GIDI + +LVI
Sbjct 297 -------NLTSIHGQLLAKARLKAMNKF-TEGDVRTSKHVLLTTDVAARGIDIPEVDLVI 348
Query 714 LYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
+ + + GR GRA ++ N +E + ++ + K + S +
Sbjct 349 QLDPPTDPDMFLHRCGRTGRANKVGRAIVMLNNNALESDYVDFMEVKGLKMSEVE 403
Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 46/129 (36%), Gaps = 12/129 (9%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPVYEQQKSVFSK 312
K+ ++ A TG GKT + + K + +G + + + Q +VF
Sbjct 51 NKDVVVEAVTGSGKTLAFAIPVLERVTKCMKENRGSSGLYGIVISPTRELANQINTVFHT 110
Query 313 YF-----ERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGTIPSLSI 365
++ + I G+ A N III TP L++ + S
Sbjct 111 LLQFYPEDQPPIKTQLIVGSLATVREDLNAFAENKPQIIIATPGRLLDFFSSNAVKR-ST 169
Query 366 FTLMIFDEC 374
+++ DE
Sbjct 170 VEMVVLDEA 178
>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DRS1 PE=3 SV=1
Length=840
Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/199 (17%), Positives = 70/199 (35%), Gaps = 19/199 (10%)
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
I+F + + I G L G + M+ + ++AF+
Sbjct 565 NRVIVFFRQKKEAHR-ARIIFG-----------LLGLKAAELHGSMSQEQRINAVEAFR- 611
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSN 744
G L+AT +A G+DI VI YE + + + R G C +
Sbjct 612 DGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEP 671
Query 745 AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
+ K + + + + + + D AV E ++ + I D ++ K
Sbjct 672 DRKVVKAAVKAGRAQ---GAKIVSRVVDPAVADEWASKVEEMQAEIEDILKEEKEEKQLA 728
Query 805 NKKLLCRKCKALACYTADV 823
++ ++ + L + +++
Sbjct 729 QAEMQVKRGQNLIKHGSEI 747
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/186 (17%), Positives = 61/186 (33%), Gaps = 18/186 (10%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSEN--SCPPSEVSDTNLYSPFKPRNYQLE 249
+ E+ S Q F P + L+ S P Q +
Sbjct 304 APEENPTKSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPI---------------QRK 348
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVFFANQIPVYEQQKS 308
+ GK+ + A TG GKT ++ L P+ +V + Q +
Sbjct 349 AIPVGLLGKDLVGGAVTGSGKTAAFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYN 408
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V +K + G + + + D+II TP +++++ ++ +
Sbjct 409 VATKLATYTDITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEI 468
Query 369 MIFDEC 374
++ DE
Sbjct 469 LVLDEA 474
>sp|A4R8B5|HAS1_PYRO7 ATP-dependent RNA helicase HAS1 OS=Pyricularia
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507
GN=HAS1 PE=3 SV=2
Length=587
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/183 (20%), Positives = 67/183 (37%), Gaps = 5/183 (3%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
D D+ + + E Q SE + + + K Q P
Sbjct 87 AAPAKEADGDIPGDLTLPTTAESEAQAFSELNLSENTMKAIEEMGFTKMTEIQRRGIPPL 146
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ GK+ + A TG GKT + + LK P+ G +V + + Q V
Sbjct 147 LAGKDVLGAAKTGSGKTLAFLIPAVEMLRSLKFKPRNGTGVIV-VSPTRELALQIFGVAR 205
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ H + G E++ + +++I TP L+++L+ ++ +L+I
Sbjct 206 DLMKHHSQTYGIVIGGANRRAEAEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSLVI- 264
Query 372 DEC 374
DE
Sbjct 265 DEA 267
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/123 (20%), Positives = 42/123 (34%), Gaps = 16/123 (13%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L + I+F + V + +++ +L GK
Sbjct 347 LLFSFLQKMKKKKIIVFFSSCNSVKYYAELL------NYIDCQVLDLHGK--------QK 392
Query 677 AQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
QK F+ + D LI T VA G+DI + ++ ++ + I GR R
Sbjct 393 QQKRTNTFFEFCNADRGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGT 452
Query 735 GSK 737
K
Sbjct 453 NKK 455
>sp|A5F5C5|RAPA_VIBC3 RNA polymerase-associated protein RapA OS=Vibrio
cholerae serotype O1 (strain ATCC 39541 / Classical
Ogawa 395 / O395) OX=345073 GN=rapA PE=3 SV=1
Length=969
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 70/472 (15%), Positives = 151/472 (32%), Gaps = 61/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYR-- 320
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLTGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
V S A + ++ + D + + Q L+ L++ DE H+ +
Sbjct 236 VEAFSEADNPFETQQYVLCSLDFLRKSRQRFEQALEAEW-------DLLVVDEAHH-LEW 287
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
HP Y Q + + P V+ LTA+ ++ + +L LDA
Sbjct 288 HP-EKPSREY--QVIEALAEQTPGVLLLTATPEQLGRES------HFARL-RLLDADRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+ ++E EQ ++SD+ K I +L+ +E + + K LE+ +
Sbjct 338 DYEAFVKEEEQYAPVADAVTALFSGEKLSDEAKNKITELL--SEQDVEPLFKALESHASE 395
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
Q+ ++ V + + ++ L I S++
Sbjct 396 DEIALARQELIDNLMDRHGTGRVL-FRNTRAAIKGFPVRNVHLLPL------EIPSQYTT 448
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L + A +++ Q FE + + + L
Sbjct 449 SMRVAGMLGGKLTPEARAMKMLYPEEIFQEFE-----------GDESSWWQFDSRVNWLL 497
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
E+ ++ + L+ + ++ + + GM++ +
Sbjct 498 EKVKAKRSEKILVIASRASTALQLEQALRER---EGIRATVF--------HEGMSIIERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 547 KAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B
OS=Mus musculus OX=10090 GN=Rad54b PE=2 SV=1
Length=886
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 93/584 (16%), Positives = 208/584 (36%), Gaps = 73/584 (13%)
Query 215 EDPECQNLSENSCPPSEVS-DTNLYSPFKPRN-------YQLELALPAMKGKNTIICAPT 266
++ + + + P +V D +L +P Y+ + + A+ I+
Sbjct 247 DENHQRMFNRHCSPIVDVVIDPHLVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEM 306
Query 267 GCGKTF-----VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
G GKT + L C+ P + K + + + F K+ ++
Sbjct 307 GLGKTLQCISLIWTLQCQGPYGGKPVIK--KTLIVTPG-SLVNNWRKEFQKWLGSERIKI 363
Query 322 TGISGATAENVPVEQIVEN--NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 379
+ ++ VE+ + + + ++I++ ++L+ +L + F L+I DE H
Sbjct 364 FTVD----QDHKVEEFINSTFHSVLIISYEMLLRSLDQ---IKTIPFGLLICDEGHRLK- 415
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
+ + SS + + LT + D + +D++ +S
Sbjct 416 --------NSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYR 467
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQ--LMRDTESLAKRICKDLENLS 497
+ + + ++ R++ R + + + + L R E + K + +EN+
Sbjct 468 KIYEEPIIISREPSSSKEE--RELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVV 525
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
+ + Y + + + + F + E S +HL + H
Sbjct 526 FCRPGALQIELYRKLLRS---QSVRFCLQGLLENS----------AHLICIGALKKLCNH 572
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
+ + K+F S+ + Q L F L+ E+ KL+ L +
Sbjct 573 PCLLFSSVKGKEFSSSCEENEERNLCQGLLSVFPAGYNPLQFS----EEESGKLQVLVKL 628
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + L P IL R ++ L+ + + L G+ +Q
Sbjct 629 LAVIHELRPTEKVILVSNYRQTLNVLEEVCKRH----GYACARLDGQTPVSQ-------- 676
Query 678 QKCILDAF--KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----G 731
++ I+D+F K S D L+++ G+++ + +ILY+ N IQ R G
Sbjct 677 RQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDG 736
Query 732 RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
+ + L + + EK ++ ++ +++ L E +
Sbjct 737 QKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSSEHI 780
>sp|A2Q9T6|HAS1_ASPNC ATP-dependent RNA helicase has1 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=has1 PE=3 SV=1
Length=606
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 18/198 (9%)
Query 192 IKDVETEDL------EDKMETSDIQ----IFYQEDPECQNLSENSCPPSEVSDTNLYSPF 241
+++ + ED ED Q D E + +E + +
Sbjct 87 VREADPEDEDDNEGKEDGNGADLPSLDAVRLPQTDGEPKKFTELNLSEKTMKGIQDMGFE 146
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFAN 298
Q P + G++ + A TG GKT + + L+ P+ G V+ +
Sbjct 147 TMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTG-VLVVSP 205
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK- 357
+ Q V + H + G E++ + +++I TP L+++L+
Sbjct 206 TRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNT 265
Query 358 -GTIPSLSIFTLMIFDEC 374
G + ++ DE
Sbjct 266 PGFVFK--NLKTLVIDEA 281
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/332 (16%), Positives = 103/332 (31%), Gaps = 45/332 (14%)
Query 444 HNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK---RICKDLENLSQIQ 500
+ E++Q P R V ++ L+ E L+ + L
Sbjct 146 ETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSP 205
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
RE Q + + + + R L K + L+I+ R+
Sbjct 206 TRELALQIFGVARELMAHHSQTYGIVIGGANRR------AEAEKLTKGVN-LLIATPGRL 258
Query 561 KDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP--------KL 611
D L F F N++ DE ++ L FE++++++ + + K+
Sbjct 259 LDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTMLFSATQTTKV 318
Query 612 EDLCFI-------------LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL-- 656
EDL I +E + + + L ++++ N K +
Sbjct 319 EDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKRNLKKKIIVF 378
Query 657 --KPGILTGRGKTNQNTGM-------TLPAQKCILDAFKA-SGDHNILIATSVADEGIDI 706
+ + + QK F+ + LI T VA G+DI
Sbjct 379 FSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICTDVAARGLDI 438
Query 707 AQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
+ +I ++ + + GR R K
Sbjct 439 PAVDWIIQFDPPDDTRDYVHRVGRTARGVNGK 470
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HFM1
PE=1 SV=3
Length=1187
Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 51/312 (16%), Positives = 99/312 (32%), Gaps = 52/312 (17%)
Query 111 QPEFKTRIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKT 170
QP FK + ++ D + E EEI + L DK++
Sbjct 39 QPSFKVGLSYNSLLDDCDD---ENETEEIFEGRG--------------LQFFDKDDNFSI 81
Query 171 LKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPS 230
+ F D+E E+ + + I S C +
Sbjct 82 TADDTQVTSKLFDH---------DLEQTPDEEAKKPKKVTI---------RKSAKKCLST 123
Query 231 EVSDTNLYSPF---KPRNYQLELALPAMK-GKNTIICAPTGCGKTFVSLLICEHHLKK-F 285
+ + F + Q E + +N II +PTG GKT + L +K+
Sbjct 124 TILPDSFRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETN 183
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIII 345
K+++ A + + + V ++ T+ + + +III
Sbjct 184 SDTNNTKIIYIAPTKSLCYEMYKNWF--PSFVNLSVGMLTSDTSFLETEKA--KKCNIII 239
Query 346 LTPQI--LVNNLKKGTIPSLSIFTLMIFDECHNTS-KQHPYNMIMFNYLDQKLGGSSGPL 402
TP+ L+ + L++ DE H K+ ++ ++
Sbjct 240 TTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEKRGASLEVILTRMNTMCQNI---- 295
Query 403 PQVIGLTASVGV 414
+ + L+A+V
Sbjct 296 -RFVALSATVPN 306
Score = 41.3 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 79/217 (36%), Gaps = 27/217 (12%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI----------- 660
L I+++ P ++F TRA + ++ N S K
Sbjct 359 SKLIEIIEKHADNRP---VLIFCPTRASTISTAKFLLNNHIFSKSKKRCNHNPSDKILNE 415
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL----YE 716
+G + G++L + + F +G NIL +TS G+++ ++I +
Sbjct 416 CMQQGIAFHHAGISLEDRTAVEKEF-LAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWN 474
Query 717 YVG-------NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
+V++MI GR + C ++ +++ + + + N+ + +S L L
Sbjct 475 SSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYE-NLIHGTDVLESSLHLN 533
Query 770 TWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
+ + + + E + + V +N
Sbjct 534 LIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNP 570
>sp|P0CQ82|DBP4_CRYNJ ATP-dependent RNA helicase DBP4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=DBP4 PE=3 SV=1
Length=859
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFV----KTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
KL+ L ++ + I+FV + R + + + +P L
Sbjct 301 KLDALWGFVKSHLKM----KGIVFVTSGKQARRVRFIFETFRRLHPGLPL---------- 346
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + P + I F +S +LI T VA G+D + VI + +V I
Sbjct 347 -MHLHGKQKQPTRLDIFQRFSSS-KSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYI 404
Query 726 QTRGR-GRARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R + + L G+ + + K + ++ +++
Sbjct 405 HRVGRTARYQSAGTALTILCPSEEEGMKTRWGEKAIEVKRIKIKEGKMGNLKQSM 459
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/199 (18%), Positives = 73/199 (37%), Gaps = 18/199 (9%)
Query 193 KDVETEDLEDKMETSDIQIF--YQEDPECQNLSENSCPPSEVSDTNLYSP---------- 240
K + ++ + +++++ ++ +E E Q+ +N PPSE++ +
Sbjct 18 KGTKGKNAQPRLKSNQLKRLKINEELKELQSRVDNFVPPSEITLFSELPMSSKTQKGLKS 77
Query 241 ---FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVF 295
P Q PA++ ++ + A TG GKT L+ L G V
Sbjct 78 SHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLERLYLEKWGPMDGLGAVV 137
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + Q + H + + G ++ + +I+I TP L+ +L
Sbjct 138 ISPTRELAVQTFMQLRDIGKYHNFSAGLVIGG-KPLKEEQERLGRMNILIATPGRLLQHL 196
Query 356 KKGTIPSLSIFTLMIFDEC 374
S +++ DE
Sbjct 197 DSTVGFDSSAVKVLVLDEA 215
>sp|P0CQ83|DBP4_CRYNB ATP-dependent RNA helicase DBP4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=DBP4 PE=3 SV=1
Length=859
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILFV----KTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
KL+ L ++ + I+FV + R + + + +P L
Sbjct 301 KLDALWGFVKSHLKM----KGIVFVTSGKQARRVRFIFETFRRLHPGLPL---------- 346
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ + P + I F +S +LI T VA G+D + VI + +V I
Sbjct 347 -MHLHGKQKQPTRLDIFQRFSSS-KSALLICTDVAARGLDFPAVDWVIQLDCPDDVDTYI 404
Query 726 QTRGR-GRARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R + + L G+ + + K + ++ +++
Sbjct 405 HRVGRTARYQSAGTALTILCPSEEEGMKTRWGEKAIEVKRIKIKEGKMGNLKQSM 459
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 35/199 (18%), Positives = 73/199 (37%), Gaps = 18/199 (9%)
Query 193 KDVETEDLEDKMETSDIQIF--YQEDPECQNLSENSCPPSEVSDTNLYSP---------- 240
K + ++ + +++++ ++ +E E Q+ +N PPSE++ +
Sbjct 18 KGTKGKNAQPRLKSNQLKRLKINEELKELQSRVDNFVPPSEITLFSELPMSSKTQKGLKS 77
Query 241 ---FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVF 295
P Q PA++ ++ + A TG GKT L+ L G V
Sbjct 78 SHFLNPTPIQSLAIPPALQARDILGSAKTGSGKTLAFLIPLLERLYLEKWGPMDGLGAVV 137
Query 296 FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ + Q + H + + G ++ + +I+I TP L+ +L
Sbjct 138 ISPTRELAVQTFMQLRDIGKYHNFSAGLVIGG-KPLKEEQERLGRMNILIATPGRLLQHL 196
Query 356 KKGTIPSLSIFTLMIFDEC 374
S +++ DE
Sbjct 197 DSTVGFDSSAVKVLVLDEA 215
>sp|Q6CN92|SPB4_KLULA ATP-dependent rRNA helicase SPB4 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /
NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=SPB4 PE=3 SV=1
Length=596
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/379 (15%), Positives = 125/379 (33%), Gaps = 17/379 (4%)
Query 412 VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 471
V V + + + ++ + L + K ++ P R++ S+I D
Sbjct 47 VVVESVTGSGKTIAFVIPILERLIKEEANSAKFKKSHFHSLIISPT---RELASQIHDVI 103
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
+ + + + ++ + S + T Q +V + F +
Sbjct 104 EDFLKYYPDNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKT 163
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
+ + L N + +M F + + +AG + + +
Sbjct 164 ASCGTVVLDEADKLLDLNFQKDVETILKMLPKQRRTGLFSATIESAGAQIFKTGMRNPVK 223
Query 592 EKLQELESVSR----DPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
++ S + PK + + + I++ T V +I
Sbjct 224 VAVKSNSSAPSSLSINYIVIPPKDKLQLLLTLLNNYRFK--KCIVYFPTCISVTYFYAFI 281
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+L+ ++ + + + + ++ LD+F ++ +L T VA GIDI
Sbjct 282 NHLKELNLIQDDLKL----FSLHGKLQTQSRMKTLDSFTSNLTDAVLFTTDVAARGIDIP 337
Query 708 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 765
+LVI + + I GR GRA R K + + + K + +
Sbjct 338 DVDLVIQLDPPTDADIFIHRCGRTGRANRIGKALVFLNEGREEDYVPFLEVKNVKLEEES 397
Query 766 LRLQTWDE--AVFREKILH 782
+ L+ + +F + ILH
Sbjct 398 VELKGVENLTKIFHDWILH 416
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 17/124 (14%)
Query 266 TGCGKTFVSLL--ICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSVFSKYF---- 314
TG GKT ++ + I E +K+ K K + + + Q V +
Sbjct 53 TGSGKT-IAFVIPILERLIKEEANSAKFKKSHFHSLIISPTRELASQIHDVIEDFLKYYP 111
Query 315 -ERHGYRVTGISGATAENVPVE-QIVENND--IIILTPQILVNNLKKGTIPSLSIFTLMI 370
+ R + G ++ +V + +N I++ TP +++ L+K + + S T ++
Sbjct 112 DNLYPIRSQLLVGTSSASVRDDINSFTDNRPQILVGTPGRVLDFLQKTNVKTASCGT-VV 170
Query 371 FDEC 374
DE
Sbjct 171 LDEA 174
>sp|Q6BSM3|SPB4_DEBHA ATP-dependent rRNA helicase SPB4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394
/ JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SPB4 PE=3 SV=1
Length=614
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/259 (17%), Positives = 88/259 (34%), Gaps = 31/259 (12%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ + S + S + + E L I++ T V + +
Sbjct 237 SKNSKNAAPTSLNVSYMHVEPETKISALIALIKDYRFQKCIVYFPTCTSVKHFYSVFQTL 296
Query 651 PKLSFL-KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD----HNILIATSVADEGID 705
+ + + G+ ++ + L F + GD ++L+ T VA GID
Sbjct 297 VNVEEEDRYKFFSLHGQ------LSTKPRLKTLQNF-SEGDSMLHKHVLLTTDVAARGID 349
Query 706 IAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
I +LVI + + GR GRA ++ N E++ +N + K M S
Sbjct 350 IPDVDLVIQLDPPTDPDVFFHRSGRTGRANKVGQAIVMLNNNSREEDYVNFMEVKGMTMS 409
Query 765 ILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACY----- 819
+ + + H+KF + ++ + D+ +L + Y
Sbjct 410 NME----CPNISK-------IHDKFQKKFRK--YMLEDRARHELAIKSYVGFVRYYSKHM 456
Query 820 TADVRVIEECHYTVLGDAF 838
+ + ++ Y LG +
Sbjct 457 ASSIFRLQTLDYVGLGKMY 475
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/138 (17%), Positives = 49/138 (36%), Gaps = 21/138 (15%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKF------------PQGQKGKV-VFFANQIPVY 303
K+ ++ A TG GKT ++ L P + + + + +
Sbjct 47 NKDVVVEAVTGSGKTLAFVIPVLQKLSNRLYNIDEEGENPEPVKKGHMLSIILSPTRELA 106
Query 304 EQQKSVFSKYF-----ERHGYRVTGISGATAENVPVEQIVENND--IIILTPQILVNNLK 356
+Q ++VF K ++ + + G+ + N I+I TP L++ L
Sbjct 107 KQIQTVFDKVLEYIPEDKATIKTQLLVGSLSSVREDIDYFLTNKTHILIATPGRLLDFLS 166
Query 357 KGTIPSLSIFTLMIFDEC 374
+ + + + DE
Sbjct 167 SNYV-KTNSVEIAVLDEA 183
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus OX=10090
GN=Helq PE=1 SV=2
Length=1069
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 68/348 (20%), Positives = 126/348 (36%), Gaps = 54/348 (16%)
Query 179 RNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSE-------NSCPPSE 231
N FS + + + +D + + P ++L E + +
Sbjct 206 NNDFSNVRAASESSRRKSLKDHLKSTMAGNARAQTPAFPRSKHLREALLSEEISVAKKAI 265
Query 232 VSDTNLYSPF-----KPRNYQLEL---------------ALPAMKGKNTIICAPTGCGKT 271
S ++ PF K R+ ++L + KN I PT GKT
Sbjct 266 ESPSDDLGPFYSLPSKVRDLYVQLKGIKKLYDWQHTCLTLRSVQERKNLIYSLPTSGGKT 325
Query 272 FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAEN 331
V+ ++ L + V+ + + +++ S S + G+ V +G+
Sbjct 326 LVAEILMLQELLCRQKD----VLMILPYVAIVQEKISSLSSFGIELGFFVEEYAGSKGRF 381
Query 332 VPVEQIVENNDIIILT---PQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 388
P+++ E + I T LVN L + LS L++ DE H + I+
Sbjct 382 PPIKRR-EKKSLYIATIEKAHSLVNALIE--TSRLSTLGLVVVDELH-MIGEGSRGAILE 437
Query 389 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEE 448
L + L S Q+IG++A+ L+ + L A L A T + E
Sbjct 438 MTLAKVLYTSKTT--QIIGMSAT------------LNNVEDLQAFLKAE-YYTSQFRPVE 482
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
L++ + K +V+S+ +D + + +E+L K L L
Sbjct 483 LKEFL-KVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVAL 529
>sp|Q8EJ93|RAPA_SHEON RNA polymerase-associated protein RapA OS=Shewanella
oneidensis (strain MR-1) OX=211586 GN=rapA PE=3
SV=1
Length=968
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 64/475 (13%), Positives = 143/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQLLTCRAE---RVLIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAFADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ ++ ++++ Y + + + ++ N
Sbjct 321 SHFARLRLLD-----PDRFYD-YDAFLAEENSYKDVAIAAEALAGESKLSDYAINSLTEL 374
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
E ++ + Q + E + L + + A + R+
Sbjct 375 LSEKDI-APSIRLIQAEGIDSELQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRI 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + + R + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPEQYLTAARVNDMMGGRKSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASGADTALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|Q6C7D2|HAS1_YARLI ATP-dependent RNA helicase HAS1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=HAS1 PE=3
SV=1
Length=605
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT + + LK P+ G +V + + Q V
Sbjct 166 LAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKFKPRNGTGVIV-VSPTRELALQIYGVAR 224
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
H + + G E++ + ++++ TP L+++L+ +I
Sbjct 225 DLMANHSQTLGIVIGGNNRRQEEEKLNKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALII 284
Query 372 DEC 374
DE
Sbjct 285 DEA 287
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/344 (16%), Positives = 114/344 (33%), Gaps = 41/344 (12%)
Query 458 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE-NLSQIQNREFGTQKYEQWIVTV 516
+ RK++ + + I+ R+ + +DL N SQ G Q +
Sbjct 191 EMLRKLKFKPRNGTGVIVVSPTRELALQIYGVARDLMANHSQTLGIVIGGNNRRQEEEKL 250
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKY-----NDALIISEHARMKDALDYLKDFF 571
K + + + +L+ + L I MK+ + L
Sbjct 251 NKGVNLLVCTPGRLLDHLQNSQGFVFKNLKALIIDEADRILEIGFEQEMKEIIKILPKER 310
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF------------ILQ 619
++ + + + R K L ++ D N + E L +L
Sbjct 311 QSMLFSATQTTKVEDLARISLKKGPL-YLNVDEHNVSSTAEGLEQGYVVCDSDKRFLLLF 369
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
N I+F+ + V + +++ +L GK QK
Sbjct 370 SFLKRNAGKKIIVFLSSCNSVKFYGELL------NYIDLPVLDLHGK--------QKQQK 415
Query 680 CILDAFK-ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS- 736
F+ + +LI T VA G+DI + + +I ++ + I GR R S
Sbjct 416 RTNTFFEFINAKQGVLICTDVAARGLDIPKVDWIIQFDPPDDPRDYIHRVGRTARGSASG 475
Query 737 KCFLLTSNAGV-----IEKEQINMYKEKMMNDSILRLQTWDEAV 775
K + + + + ++ ++ + + + N I +Q+ E +
Sbjct 476 KSIMFLTPSELGFLRYLKAAKVPLNEYEFPNKKIANVQSQLEKL 519
>sp|Q2FY15|CSHB_STAA8 DEAD-box ATP-dependent RNA helicase CshB
OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061
GN=cshB PE=3 SV=1
Length=448
Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 103/351 (29%), Gaps = 43/351 (12%)
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHN--LEELEQVVYKPQKFFRKVESRISDKFK 472
+ + + I K + S T K + L L Q++ K + + + +
Sbjct 26 KPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQLIDSEIKEPQAIVVAPTRELA 85
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
+ + + ++ + ++ +
Sbjct 86 QQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQPQLIIGTPTRINDLAKTGHLHV 145
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEE 592
+ L + + L + ++ + + FS I Q L +
Sbjct 146 HLASYLVIDEADLMIDLGLIEDVDYIAARLEDNANIAVFSAT-------IPQQLQPFLNK 198
Query 593 KLQELESVSRD--------------PSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
L E V+ D P+ K+E ++ + I+F +R
Sbjct 199 YLSHPEYVAVDSKKQNKKNIEFYLIPTKGAAKVEKTLNLIDILNPY----LCIIFCNSRD 254
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ L + GI G + G+T +K + + + +IA+
Sbjct 255 NANDLARSLNE--------AGIKVGM----IHGGLTPRERKQQMKRIRNL-EFQYVIASD 301
Query 699 VADEGIDIAQCNLVILYEYVGN---VIKMIQTRGRGRARGSKCFLLTSNAG 746
+A GIDI + VI ++ + + GRG +G L + +
Sbjct 302 LASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYSPDEE 352
Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 52/135 (39%), Gaps = 6/135 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + +K N I + TG GK+ LL + + ++ + + A
Sbjct 26 KPTEIQNRIIPRILKRTNLIGQSQTGTGKSHAFLLPLMQLID--SEIKEPQAIVVAPTRE 83
Query 302 VYEQQKSVFSKYFERH--GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ QQ + + + G V G T ++ +II TP + + K G
Sbjct 84 LA-QQLYDAANHLSQFKAGVSVKVFIGGTDIEKDRQRCNAQPQLIIGTPTRINDLAKTGH 142
Query 360 IPSLSIFTLMIFDEC 374
+ + + + ++ DE
Sbjct 143 LH-VHLASYLVIDEA 156
>sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28
OS=Homo sapiens OX=9606 GN=DDX28 PE=1 SV=2
Length=540
Score = 68.7 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query 610 KLEDLCFIL---QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
K+ +L IL P ++F + + V+ L ++ + K+ L+ L G+
Sbjct 377 KVAELVHILKHRDRAERTGPSGTVLVFCNSSSTVNWLGYILDDH-KIQHLR---LQGQMP 432
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
G+ QK D IL+ T +A G+D LV+ Y++ + I
Sbjct 433 ALMRVGIFQSFQKSSRD---------ILLCTDIASRGLDSTGVELVVNYDFPPTLQDYIH 483
Query 727 TRGRGRARGSKC 738
GR GS+
Sbjct 484 RAGRVGRVGSEV 495
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/128 (22%), Positives = 48/128 (38%), Gaps = 10/128 (8%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-----GKVVFFANQIPVYEQQKSV 309
++G++ + A TG GKT LL L P + + + QQ
Sbjct 163 LRGRHVVCAAETGSGKTLSYLLPLLQRLLGQPSLDSLPIPAPRGLVLVPSRELA-QQVRA 221
Query 310 FSKYFER-HGYRVTGISGATAENVPVEQIVE--NNDIIILTPQILVNNLKKGTIPSLSIF 366
++ R G V + G Q+ + D+++ TP L LK + SL
Sbjct 222 VAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALK-SRLISLEQL 280
Query 367 TLMIFDEC 374
+ ++ DE
Sbjct 281 SFLVLDEA 288
>sp|Q9VD51|DDX18_DROME Probable ATP-dependent RNA helicase pitchoune
OS=Drosophila melanogaster OX=7227 GN=pit PE=2 SV=2
Length=680
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+KG++ + A TG GKT + + + L+ P+ G V+ + + Q V
Sbjct 222 LKGRDLVGAAQTGSGKTLAFLIPAVELINKLRFMPRNGTG-VIIISPTRELSMQTFGVLK 280
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ H + + G + V E++ + +I++ TP L+++L+ +I
Sbjct 281 ELMAHHHHTYGLVMGGSNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLYKNLQCLII 340
Query 372 DEC 374
DE
Sbjct 341 DEV 343
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/126 (20%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
E +L N + ++F + + + +++ + + GK Q
Sbjct 418 EKRLLVLFTFLKKNRKKKVMVF------FSSCMSVKYHHELFNYIDLPVTSIHGKQKQTK 471
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
T Q C + + IL+ T VA G+DI Q + ++ Y+ + + I GR
Sbjct 472 RTTTFFQFC-------NAESGILLCTDVAARGLDIPQVDWIVQYDPPDDPREYIHRVGRT 524
Query 731 GRARGS 736
R G+
Sbjct 525 ARGSGT 530
>sp|Q9ESV0|DDX24_MOUSE ATP-dependent RNA helicase DDX24 OS=Mus
musculus OX=10090 GN=Ddx24 PE=1 SV=2
Length=857
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/378 (16%), Positives = 117/378 (31%), Gaps = 44/378 (12%)
Query 407 GLTASVGVGDAKNTDEAL---DYICKLCASLDASVIATVKHNLEEL---EQVVYKPQKFF 460
G+ A+ + + L D + +SL+ + + EE EQ Q+
Sbjct 315 GVQATPETSASASAQTLLVCDDDAGEGPSSLEEKPVPKQNEDGEEKFDAEQAGKLKQELC 374
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKRICKDLE---NLSQIQNREFGTQKYEQWIVTVQ 517
++ + ++ ++ T LA ++ + ++ + I Q +
Sbjct 375 DQIAIYKVHPRRPLLGLVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRML 434
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM--KDALDYLKDFFSNVR 575
+ + K + S+LR+ L+I E RM K L +
Sbjct 435 NRHPEIVIATPGRLWELVKEKHPHLSNLRQLR-CLVIDEADRMVEKGHFAELSQLLEMLN 493
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL--EDLCFILQEEYHLNPETITILF 633
+ ++ Q L L K+ D +L ++ + + I
Sbjct 494 DSQYNPSRQTLVFSATLTLVHQAPARILHKKHVKKMDKTDKLDLLMQKVGMRGKPKVIDL 553
Query 634 VKTRALVDALKN----------------WIEGNPKLSFLKPGILTGRGKTNQ-------- 669
+ V+ L ++ P S + ++ + +
Sbjct 554 TRNEGTVETLTETKIHCETDEKDLYLYYFLMQYPGRSLVFANSISCIKRLSGLLKVLDVM 613
Query 670 ----NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ M + L+ F D +L+AT VA G+DI + VI Y+ I
Sbjct 614 PLTLHACMHQKQRLRNLEQFARLQDC-VLLATDVAARGLDIPKVQHVIHYQVPRTSEIYI 672
Query 726 QTRGR-GRARGSKCFLLT 742
GR RA L+
Sbjct 673 HRSGRTARAASEGLSLML 690
Score = 40.9 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 27/83 (33%), Gaps = 2/83 (2%)
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ + Q + + G + G + + + +I+I TP L
Sbjct 391 LVLTPTRELAIQVRQHIDAVAKFTGINTAILVGGMSTQKQQRMLNRHPEIVIATPGRLWE 450
Query 354 NLK--KGTIPSLSIFTLMIFDEC 374
+K + +L ++ DE
Sbjct 451 LVKEKHPHLSNLRQLRCLVIDEA 473
>sp|A2QWW0|MAK5_ASPNC ATP-dependent RNA helicase mak5 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=mak5 PE=3 SV=1
Length=766
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
NP+ T++F + + V L ++ G ++ M A+ ++
Sbjct 493 NPKHRTLVFTNSISAVRRLTQLLQN------------LGLPALALHSSMAQKARLRSVER 540
Query 685 FKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
F + S +IL+AT VA G+DI + VI Y + GR RA S
Sbjct 541 FSSPTSDPSSILVATDVAARGLDIKGIDFVIHYHAPRAADTYVHRSGRTARAGAS 595
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/137 (22%), Positives = 55/137 (40%), Gaps = 18/137 (13%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQ----GQKGK-------VVFFANQIPV 302
+ G + I A TG GKT + I EH+L+K Q G++ K + + +
Sbjct 227 LDGHDVIGKASTGSGKTLAFGIPILEHYLEKRRQDLRAGKEEKKKDTAPIALIMSPTREL 286
Query 303 YEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-- 357
Q + + R+ ++G + ++++ DI+I TP + L
Sbjct 287 AHQLAKHIGELALHAPGSNARIALLTGGLSVQKQ-QRVLAGADIVIGTPGRVWEVLSSGQ 345
Query 358 GTIPSLSIFTLMIFDEC 374
G I +S ++ DE
Sbjct 346 GLIRKMSEIKFLVIDEA 362
>sp|Q818H2|CSHB_BACCR DEAD-box ATP-dependent RNA helicase CshB
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=cshB PE=2 SV=1
Length=436
Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/325 (14%), Positives = 116/325 (36%), Gaps = 31/325 (10%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L + + +V+ I+ + + Q+ + L K +D I R
Sbjct 59 LLPTLNRINASREEVQLVITAPTRELAQQIYEEIVKLTKFCAED----QMITARCLIGGT 114
Query 509 YEQWIVTVQKACMVF--QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
+Q + K P + ++ +ALF++ ++ ++A ++ + + D
Sbjct 115 DKQRSIEKLKKQPHIVVGTPGRIKDLVEEQALFVHKANTIIVDEADLMLDMGFIHDVDKI 174
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEK-LQELESVSRDPSNE----------NPKLEDLC 615
N++ F + F +K ++ E + +P K +
Sbjct 175 AARMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKI 234
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
++ + + ++F T+ + D + + + G+ GR + ++
Sbjct 235 DLVHKMLLQFKPYLAVVFTNTKKMADQVADGLMER--------GLKVGR----IHGDLSP 282
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
+K ++ + + ++AT +A GIDI + VI Y+ ++ + R AR
Sbjct 283 RDRKKMMKQIR-DLEFQYIVATDLAARGIDIQGISHVINYQPPSDLDFFVHRVAR-TARA 340
Query 736 SKCFLLTSNAGVIEKEQINMYKEKM 760
+ + +E ++ +++
Sbjct 341 GHSGIAVTIYDPANEEALDSLEKQR 365
Score = 56.3 bits (134), Expect = 9e-07, Method: Composition-based stats.
Identities = 39/280 (14%), Positives = 101/280 (36%), Gaps = 28/280 (10%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q ++ KG + I + TG GKT LL + + ++ ++V A
Sbjct 26 EPTGIQQKIFPVVKKGVSVIGQSQTGSGKTHAYLLPTLNRINASR--EEVQLVITAPTRE 83
Query 302 VYEQQKSVFSK----YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 357
+ +Q K E + G T + +E++ + I++ TP + + +++
Sbjct 84 LAQQIYEEIVKLTKFCAEDQMITARCLIGGTDKQRSIEKLKKQPHIVVGTPGRIKDLVEE 143
Query 358 GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN--YLD--QKLGGSSGPLPQVIGLTASVG 413
+ + +I DE +M + ++ K+ Q++ +A++
Sbjct 144 QALF-VHKANTIIVDEA----------DLMLDMGFIHDVDKIAARMPKNLQMLVFSATIP 192
Query 414 VGDAKNTDEALDYICKL------CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
+ ++ + A+ + + +++ +V+K F+ + +
Sbjct 193 QKLKPFLKKYMENPEHIHINPKQVAAGNIEHYLVPSKHRNKID-LVHKMLLQFKPYLAVV 251
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
K + Q+ ++ + +LS ++ Q
Sbjct 252 FTNTKKMADQVADGLMERGLKVGRIHGDLSPRDRKKMMKQ 291
>sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=MAK5 PE=3 SV=2
Length=836
Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 43/120 (36%), Gaps = 16/120 (13%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ T++F + V L P L+ L M + L+ F+
Sbjct 517 KGSTLVFANSIDSVKRLV------PFLNNLNIPAFAIHSS------MIQKQRLRALERFQ 564
Query 687 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
+ + N +LIA+ VA G+DI + V Y + I GR RA ++
Sbjct 565 KASEKNDTAVLIASDVAARGLDIPNIDHVAHYHLPRSADVYIHRSGRTARAGKEGVSVMF 624
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/227 (20%), Positives = 87/227 (38%), Gaps = 23/227 (10%)
Query 171 LKLALEKERNKFSELWIVEKGIKDVETEDLEDKMET----SDIQIFYQED---PECQNLS 223
++ L+++ N+ E+ + +++ + E E+ E S + ED P QN
Sbjct 165 VEDILDEDINEIGEVDESVEPVQESKPEHDEELSENVFQHSQFVLPDDEDINLPHWQNED 224
Query 224 EN-SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH- 281
N S P + ++ KP Q + A +GK+ + A TG GKT +
Sbjct 225 SNFSLSPYTLHGLSVLGFDKPTPIQKKTIPLAAEGKDVVGKAITGSGKTLAYGIPILEKY 284
Query 282 ---LKKFPQGQKGKV------VFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATA 329
L Q ++ K+ + FA + Q + +KY + I+G +
Sbjct 285 LSNLSIINQNRQKKIINHPTGIIFAPTRELAHQVVSHLNSLAKYSPLSTNGIVSITGGLS 344
Query 330 ENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDEC 374
+ II+ TP ++ L+ + L+ +++ DE
Sbjct 345 IQKQERLLSHGPGIIVATPGRILELLQKDEDLTKRLASTDIIVLDEA 391
>sp|F4IV99|CHR5_ARATH Protein CHROMATIN REMODELING 5 OS=Arabidopsis
thaliana OX=3702 GN=CHR5 PE=1 SV=1
Length=1724
Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 86/557 (15%), Positives = 181/557 (32%), Gaps = 99/557 (18%)
Query 242 KPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 297
R+YQLE L + N I+ G GKT V + L+ Q G +
Sbjct 624 TLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKT-VQSVSMLGFLQNTQQI-PGPFLVVV 681
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI--------IILTPQ 349
+ F K+ V + A+ E + + ++ T +
Sbjct 682 PLSTLAN-WAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYE 740
Query 350 ILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP--YNMIMFNYLDQKLGGSSGPLPQVIG 407
+++ + K + + LM+ DE H Y ++ KL + P
Sbjct 741 VVLKD--KAVLSKIKWIYLMV-DEAHRLKNSEAQLYTALLEFSTKNKLLITGTP------ 791
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
+++ + L LD +E + + + + +
Sbjct 792 ------------LQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFNESELANLHLEL 839
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD 527
+I+ ++++D E K + +E + +++ Q Y +WI+ + +
Sbjct 840 R---PHILRRVIKDVE---KSLPPKIERILRVEMSPLQKQYY-KWILERNFHDLNKGVRG 892
Query 528 KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLT 587
+L L+K + + E A + ++
Sbjct 893 NQ------VSLLNIVVELKKCCNHPFLFESADH--------GYGGDINDNS--------- 929
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
KL ++ S KL L +L + ++F + ++D L ++
Sbjct 930 -----KLDKIILSSG-------KLVILDKLLVRL--RETKHRVLIFSQMVRMLDILAEYL 975
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK--ASGDHNILIATSVADEGID 705
L + L G K ++ +D F AS D L++T GI+
Sbjct 976 S----LRGFQFQRLDGSTKA--------ELRQQAMDHFNAPASDDFCFLLSTRAGGLGIN 1023
Query 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFL---LTSNAGVIEKEQINMYKEKMMN 762
+A + V++++ N +Q R G + + + +E+E + K KM+
Sbjct 1024 LATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVL 1083
Query 763 DSILRLQTWDEAVFREK 779
D ++ + E ++
Sbjct 1084 DHLVIQKLNAEGRLEKR 1100
>sp|Q6BME5|SUB2_DEBHA ATP-dependent RNA helicase SUB2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=SUB2 PE=3 SV=2
Length=435
Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/160 (19%), Positives = 59/160 (37%), Gaps = 20/160 (13%)
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ D +N KL DL L I+FV++ + L +
Sbjct 275 IKLDEKEKNRKLSDLLDSL-------EFNQVIIFVRSTQRANELNKLL------------ 315
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
+ ++G+ + +FK + I ++T V GIDI + NL I Y+
Sbjct 316 CSSNFPSIAVHSGLPQEERIERYKSFKEF-NKRICVSTDVFGRGIDIERINLAINYDLPN 374
Query 720 NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ + GR G+K ++ + ++E + + +
Sbjct 375 EADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSR 414
Score = 44.0 bits (102), Expect = 0.005, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L P V+ +
Sbjct 73 HPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVI--CHTRE 130
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY V G T + ++N D I++ TP L +
Sbjct 131 LAYQIRNEYARFSKYMPDVKTEV--FYGGT-PITRDLEKLKNKDTCPHIVVATPGRL-HA 186
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L L+ + DEC
Sbjct 187 LVTEKSIRLNNIKSFVIDEC 206
>sp|Q75C76|DBP4_EREGS ATP-dependent RNA helicase DBP4 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP4 PE=3 SV=2
Length=763
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/298 (17%), Positives = 94/298 (32%), Gaps = 32/298 (11%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR-K 547
+ L Q ++ G I+ + +A M K I L L
Sbjct 166 LIGTPGRLLQHMDQSVGLNTSNLQILVLDEADRCLDMGFKKALDAIVSNLPPSRQTLLFS 225
Query 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
+ +++ AR+ A + ++L Q + ++ D
Sbjct 226 ATQSQSLADLARLSLADYKTVGTMDGPSSKNKPATPENLEQFY------IQVALPD---- 275
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
KL+ L ++ + I+F+ + K ++PGI
Sbjct 276 --KLDILFSFIKSHLK----SKMIVFL------SSSKQVHFVYETFRKMQPGISLMHLHG 323
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
Q A+ LD F + L +T V GID + VI + +V I
Sbjct 324 RQ----KQTARTETLDKFSRAQHV-CLFSTDVVARGIDFPSVDWVIQTDCPEDVDTYIHR 378
Query 728 RGR-GR-ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
GR R + K L+ + E + K K++ S L ++ + ++ +
Sbjct 379 AGRSARYGKTGKSLLMLT--PQEEDAFLARLKGKLIEPSKLNIKQSKRKSIKPQLQSL 434
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/133 (19%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KG + + A TG GKT L+ L + + +
Sbjct 68 QRAAIPVALKGHDVLGAAKTGSGKTLAFLVPVLEKLYHERWTELDGLGALVISPTRELAM 127
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K ++ G+ + + V +I+I TP L+ ++ + + S
Sbjct 128 QIYEVLVKI-GKYMSFSAGLVIGGKDVKFEMERVSKINILIGTPGRLLQHMDQSVGLNTS 186
Query 365 IFTLMIFDECHNT 377
+++ DE
Sbjct 187 NLQILVLDEADRC 199
>sp|P87114|FFT1_SCHPO ATP-dependent helicase fft1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=fft1
PE=3 SV=1
Length=944
Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 85/577 (15%), Positives = 199/577 (34%), Gaps = 64/577 (11%)
Query 234 DTNLYSPFKPRNYQLE-------LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP 286
+++ S ++YQ+ + + G I+ G GKT ++ LK+
Sbjct 405 PSSIASGITLKSYQIVGLNWLCLMYKAKLSG---ILADEMGLGKT-CQVISFLASLKEKG 460
Query 287 QGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIIL 346
+ VV + + +G + + N + + D+++
Sbjct 461 IQNRHLVV--VPSSTLGNWLREFEKFCPSLRVESYSG-TQSERINKRYYLMDTDFDVLVT 517
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVI 406
T Q+ + + F + IFDE H + M + + +++
Sbjct 518 TYQLASGSRDDRSFLRKQRFDISIFDEGHYLKNR------MSERYKHLMNIPAN--FRLL 569
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
+T + L + L A + V +N++ L+ + +E
Sbjct 570 -ITGTP-------LQNNLKELISLLAFMLPKV---FDNNMQGLDIIYKIKTTSDGDIERA 618
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLS-QIQNREFGTQKYEQWIVTVQKACMVFQM 525
+ + A+ + + L +R L +L +IQ+ E+ + Q +++ + + +
Sbjct 619 YLSQERISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQ--LSLYLSVLELKN 676
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
I L H + + E + +D + + E +
Sbjct 677 LVNANRENILMQLRKAALHQLLFRSQYNL-ETLSLMSKRILREDAYLDANPQYIFEDMEV 735
Query 586 LTQRFEEKL----QELESVS--RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
++ KL + L + P ++ K++ LC +L++ P ++F + +
Sbjct 736 MSDFELHKLADQYRHLHPFALKGKPWMDSAKVKKLCSLLKK---SRPNERILIFSQFTQV 792
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATS 698
+D L+ + L FL+ L G + ++ ++D F + ++ + L++T
Sbjct 793 LDILEYVL-NTLDLEFLR---LDGSTP--------VETRQQLIDDFHTNENYKVFLLSTK 840
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK-----CFLLTSNAGVIEKEQI 753
GI++ N+VIL++ N +Q R G L+T N ++
Sbjct 841 SGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQTRPVHVYRLITKNTIEENIRRL 900
Query 754 NMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI 790
K + + + + + E + +Q +
Sbjct 901 ANTKLTLESSLTTDSEKIQKEISGELMKSLQMDGRVD 937
>sp|Q5AK59|HAS1_CANAL ATP-dependent RNA helicase HAS1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=HAS1
PE=3 SV=1
Length=565
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 62/234 (26%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP-- 609
L+++ R+ D L + FSN++A DE ++ L FE++++++ V + + ++
Sbjct 233 LLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQSMLF 292
Query 610 ------KLEDLCFI--------------------------------------LQEEYHLN 625
K+EDL I L N
Sbjct 293 SATQTTKVEDLARISLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLFSFLKRN 352
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ I+F+ + V + +++ +L GK QK F
Sbjct 353 VKKKIIVFLSSCNSVKFYSELL------NYIDLPVLDLHGK--------QKQQKRTNTFF 398
Query 686 KA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
+ + IL+ T VA G+DI + ++ ++ + I GR R K
Sbjct 399 EFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGTQGK 452
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 51/131 (39%), Gaps = 5/131 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P + G++ + A TG GKT + + + LK P+ V+ +
Sbjct 135 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTA-VIIITPTRELA 193
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q V + + H + G ++ + ++++ TP L+++LK
Sbjct 194 LQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQFV-F 252
Query 364 SIFTLMIFDEC 374
S ++ DE
Sbjct 253 SNLKALVIDEA 263
>sp|A1CIQ5|HAS1_ASPCL ATP-dependent RNA helicase has1 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=has1 PE=3 SV=1
Length=625
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/300 (16%), Positives = 94/300 (31%), Gaps = 42/300 (14%)
Query 473 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES 532
+ + +L + L RE Q + Q + +
Sbjct 196 SFLIPAVEMLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGGANR 255
Query 533 RICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFE 591
R L K + L+I+ R+ D L + F F N++ DE ++ L FE
Sbjct 256 R------AEAEKLMKGVN-LLIATPGRLLDHLQNTQGFVFKNLKTLVIDEADRILEVGFE 308
Query 592 EKLQELESVSRDPSNENP--------KLEDLCFI-------------LQEEYHLNPETIT 630
++++++ + + K+EDL I +E +
Sbjct 309 DEMRQIVKILPSEERQTMLFSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQG 368
Query 631 ILFVKTRALVDALKNWIEGNPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQK 679
+ + L ++++ N K + + + + QK
Sbjct 369 YVICEADKRFLLLFSFLKRNLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQK 428
Query 680 CILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + LI T VA G+DI + +I ++ + I GR R +K
Sbjct 429 RTNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAK 488
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 52/125 (42%), Gaps = 8/125 (6%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT + + L+ P+ G V+ + + Q V
Sbjct 178 LAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTG-VLVVSPTRELALQIFGVAR 236
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
+ + H + G E++++ +++I TP L+++L+ G + +
Sbjct 237 ELCQHHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFVFK--NLKTL 294
Query 370 IFDEC 374
+ DE
Sbjct 295 VIDEA 299
>sp|Q0DVX2|RH50_ORYSJ DEAD-box ATP-dependent RNA helicase 50 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os03g0108600 PE=2
SV=2
Length=641
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 51/342 (15%), Positives = 113/342 (33%), Gaps = 28/342 (8%)
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIA-----TVKHNLEELEQVVYKPQKFFRKVES 465
S +GD + + L Y+C + +L + + ++ + +
Sbjct 279 SCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCR 338
Query 466 RISD---KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
IS F+ ++A ++ + + ++L+ L R + E ++ C+V
Sbjct 339 SISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQ-EGFVQLNNLRCVV 397
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN---VRAAGF 579
D + + + + D + + + F + + G
Sbjct 398 LDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGV 457
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
L + + + + + K L I++E +P TI+F
Sbjct 458 HRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEE----SPVRKTIIFCNKIET 513
Query 640 VDALKNWIEG-NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF--KASGDHNILIA 696
++N + + K S +K + + + + F K + D L+
Sbjct 514 CRKVENALRRVDRKASQIKVLPF--------HAALDQQQRIANIKEFLNKQTADSMFLVC 565
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
T A GID A N V+L++Y + + ++ GR R
Sbjct 566 TDRASRGIDFANVNHVVLFDYPRDPSEYVRRVGRTARGASGN 607
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/141 (21%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK-------FPQGQKGKVV 294
+P + Q P ++GK+ II +G GKT L +L+K + +VV
Sbjct 262 RPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVV 321
Query 295 FFANQIPVYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ Q + + +R +G + +E + + D++I TP +
Sbjct 322 VLTPTAELASQVLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLY 381
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
L++G + L+ ++ DE
Sbjct 382 LLQEGFVQ-LNNLRCVVLDEV 401
>sp|P45818|ROK1_YEAST ATP-dependent RNA helicase ROK1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ROK1
PE=1 SV=1
Length=564
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 56/140 (40%), Gaps = 8/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ ++ + C PTG GKT L+ + Q K + +
Sbjct 144 EPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKE 203
Query 302 VYEQQKSVFSKYF------ERHGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNN 354
+ Q K ++ +V +S + + + + + DIII TP L++
Sbjct 204 LANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDV 263
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K + LS +IFDE
Sbjct 264 VKNEALD-LSKVKHLIFDEA 282
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/122 (25%), Positives = 50/122 (41%), Gaps = 16/122 (13%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
NE KL + ++QE P I+F+++ AL + +L + + +
Sbjct 353 GNEEGKLIAIRQLVQEGEFKPP---IIIFLESITRAKALYH------ELMYDRINVDVIH 403
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
T + I++ FK +G+ LI T V GID NLVI Y+ G+
Sbjct 404 A------ERTALQRDRIIERFK-TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAY 456
Query 725 IQ 726
+
Sbjct 457 VH 458
>sp|A6ZU15|ROK1_YEAS7 ATP-dependent RNA helicase ROK1 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=ROK1 PE=3 SV=1
Length=564
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 56/140 (40%), Gaps = 8/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E A+ ++ + C PTG GKT L+ + Q K + +
Sbjct 144 EPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAGLKGLIISPTKE 203
Query 302 VYEQQKSVFSKYF------ERHGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNN 354
+ Q K ++ +V +S + + + + + DIII TP L++
Sbjct 204 LANQIFIECFKLSHKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDIIISTPLRLIDV 263
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+K + LS +IFDE
Sbjct 264 VKNEALD-LSKVKHLIFDEA 282
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/122 (25%), Positives = 50/122 (41%), Gaps = 16/122 (13%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
NE KL + ++QE P I+F+++ AL + +L + + +
Sbjct 353 GNEEGKLIAIRQLVQEGEFKPP---IIIFLESITRAKALYH------ELMYDRINVDVIH 403
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
T + I++ FK +G+ LI T V GID NLVI Y+ G+
Sbjct 404 A------ERTALQRDRIIERFK-TGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAY 456
Query 725 IQ 726
+
Sbjct 457 VH 458
>sp|Q9VHU1|DDX55_DROME Probable ATP-dependent RNA helicase DDX55
homolog OS=Drosophila melanogaster OX=7227 GN=CG9630 PE=2
SV=1
Length=613
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 69/362 (19%), Positives = 131/362 (36%), Gaps = 47/362 (13%)
Query 456 PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVT 515
P++ V S + + I L + E +DLE+L+Q + + + +
Sbjct 80 PKEIGALVISPTRELARQISEVLAQFLE------HEDLEHLNQQLIVGGNSIEEDIATLR 133
Query 516 VQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD---------ALDY 566
+ C++ P + E+ K L + K + L++ E R+ D L Y
Sbjct 134 RETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGY 193
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP-KLE--------DLCFI 617
L + E R + L SV S P +L+ +L F+
Sbjct 194 LPRQRRTGLFSATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFV 253
Query 618 LQEEYHLNPET---ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
E+ +P T ++F T A V+ W E P L K +L GK
Sbjct 254 ALLEFLSSPATVIGKVMVFFPTCACVEY---WAEALPPL-LPKRTVLGIHGKMKN----- 304
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
+ +++ F+ + +L+ T V G+D+ + V+ ++ + GR R
Sbjct 305 --KRANVVEKFRNTPQA-VLLCTDVLARGLDVPEIEWVVQWDPPSTASSFVHRVGRTARQ 361
Query 734 ---RGSKCFLLTSNAGVIEKEQINMYKE--KMMNDSILRLQTWDEAVFR--EKILHIQTH 786
+ FLL S + +IN E K++ + + + +++ +Q
Sbjct 362 GNEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQLHRLQAA 421
Query 787 EK 788
+K
Sbjct 422 DK 423
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 40/123 (33%), Gaps = 14/123 (11%)
Query 266 TGCGKTFVSLLICEHHLKKF----PQG-QKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
TG GKT L+ L++ P G ++ + + + Q V +++ E
Sbjct 53 TGSGKTLAFLVPMLEILQRRHKETPWGPKEIGALVISPTRELARQISEVLAQFLEHEDLE 112
Query 321 VTGISGATAENVPVEQIVENND----IIILTPQILVNNLKK-----GTIPSLSIFTLMIF 371
N E I I++ TP L + ++ + ++
Sbjct 113 HLNQQLIVGGNSIEEDIATLRRETPCILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVL 172
Query 372 DEC 374
DE
Sbjct 173 DEA 175
>sp|Q9NVP1|DDX18_HUMAN ATP-dependent RNA helicase DDX18 OS=Homo
sapiens OX=9606 GN=DDX18 PE=1 SV=2
Length=670
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P ++G++ + A TG GKT + + L+ P+ G V+ + +
Sbjct 206 QHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG-VLILSPTRELA 264
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q V + H + I G + + +++ +II+ TP L+++++
Sbjct 265 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMY 324
Query 364 SIFTLMIFDEC 374
++ DE
Sbjct 325 KNLQCLVIDEA 335
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
L+++ +L GK QN T Q C + D L+ T VA G+DI + + +
Sbjct 445 LNYIDLPVLAIHGKQKQNKRTTTFFQFC-------NADSGTLLCTDVAARGLDIPEVDWI 497
Query 713 ILYEYVGNVIKMIQTRGR-GRARGSK 737
+ Y+ + + I GR R +
Sbjct 498 VQYDPPDDPKEYIHRVGRTARGLNGR 523
>sp|Q8IY21|DDX60_HUMAN Probable ATP-dependent RNA helicase DDX60
OS=Homo sapiens OX=9606 GN=DDX60 PE=1 SV=3
Length=1712
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/406 (16%), Positives = 130/406 (32%), Gaps = 49/406 (12%)
Query 223 SENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E P V D F P +Q EL K ++ +I APT GKT+ S E L
Sbjct 750 DERKDPDPRVQD------FIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVL 803
Query 283 KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND 342
K + G VV+ A + Q + F ++ + G + + N
Sbjct 804 K---ESDDGVVVYVAPTKALVNQVAATVQNRFTKNLPSGEVLCGVFTREYRHDAL--NCQ 858
Query 343 IIILTPQILVNNL----KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 398
++I P L ++ + + IFDE H I + L
Sbjct 859 VLITVPACFEILLLAPHRQNWVKKIRYV---IFDEVH-CLGG----EIGAEIWEHLLVMI 910
Query 399 SGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 458
P + L+A++ + ++ E L + D +I + + + P K
Sbjct 911 RCPF---LALSATI--SNPEHLTEWLQSVKWYWKQED-KIIENNTASKRHVGRQAGFP-K 963
Query 459 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQ------W 512
+ +V+ + + + + D+ T E+
Sbjct 964 DYLQVKQSYKVRLVLYGERYNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDL 1023
Query 513 IVTVQKACMVFQ-----MPDKDEESRICKALFLY--------TSHLRKYNDALIISEHAR 559
++ +++ ++ +C F++ RKY ++L +
Sbjct 1024 TLSPRESIQLYDAMFQIWKSWPRAQELCPENFIHFNNKLVIKKMDARKYEESLKAELTSW 1083
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
+K+ + D +++ F +++L + + P+
Sbjct 1084 IKNGNVEQARMVLQNLSPEADLSPENMITMFPLLVEKLRKMEKLPA 1129
>sp|A1CW14|HAS1_NEOFI ATP-dependent RNA helicase has1 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=has1
PE=3 SV=1
Length=622
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/221 (18%), Positives = 77/221 (35%), Gaps = 35/221 (16%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP- 609
L+I+ R+ D L + F F N++ DE ++ L FE++++++ + +
Sbjct 265 LLIATPGRLLDHLQNTQGFIFKNLKTLVIDEADRILEVGFEDEMRQIVKILPSEERQTML 324
Query 610 -------KLEDLCFI-------------LQEEYHLNPETITILFVKTRALVDALKNWIEG 649
K+EDL I +E + + + L ++++
Sbjct 325 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 384
Query 650 NPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCILDAFKA-SGDHNILIAT 697
N K + + + + QK F+ + LI T
Sbjct 385 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAKQGTLICT 444
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
VA G+DI + +I ++ + I GR R +K
Sbjct 445 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANAK 485
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
KD E+ DL + + E Q +E + N Q
Sbjct 117 KDAESTDLPSADALRLPTV----EGEPQKFTELGLTEKTLKAINDMGFDTMTEIQRRTIP 172
Query 253 PAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
P + G++ + A TG GKT + + L+ P+ G +V + + Q V
Sbjct 173 PLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIV-VSPTRELALQIFGV 231
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFT 367
+ + H + G E++++ +++I TP L+++L+ G I
Sbjct 232 ARELCQYHSQTYGIVIGGANRRAEAEKLMKGVNLLIATPGRLLDHLQNTQGFIFK--NLK 289
Query 368 LMIFDEC 374
++ DE
Sbjct 290 TLVIDEA 296
>sp|Q6CTN7|MAK5_KLULA ATP-dependent RNA helicase MAK5 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=MAK5 PE=3 SV=1
Length=796
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 73/443 (16%), Positives = 138/443 (31%), Gaps = 62/443 (14%)
Query 414 VGDAKNTDEALDYICKLC--ASLDASV--IATVKHNL-----EELEQVVYKPQKFFRKVE 464
G K + I +L S D S+ I T L + L++V K K +
Sbjct 265 TGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYTI 324
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNR--EFGTQKYEQWIVTVQKACMV 522
++ + + + + I ++ R + + + + + +A +
Sbjct 325 LSLTGGLSIQKQERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEADRL 384
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFD-- 580
Q DE +I K L + S M + + D F+ + +
Sbjct 385 LQDGHFDEFEKILKLLGKARKIKTSIDGKPTGSGWQTMIFSATFSLDLFTKLDKTSWKIL 444
Query 581 --------EIEQDLTQRFEEKLQELESVSRDPSNENPKL-----EDLCFIL-------QE 620
E+EQ L ++ + + V D + E+ K+ E L L
Sbjct 445 KTAGGENNEMEQVLNHLMKKIQFKSKPVIIDTNPEH-KVTSQVKESLIECLPMERDLYVY 503
Query 621 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
+ + T++F V L ++ SF ++ M +
Sbjct 504 YFIMMYPGTTLVFCNAIDSVKKLNAFLNNLKISSF------------QIHSSMAQKNRLR 551
Query 681 ILDAFKASGDHN-------ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
L+ FK + N ILIA+ VA G+DI+ V+ Y + I GR R
Sbjct 552 NLEKFKEQSEKNSKVGKPTILIASDVAARGLDISGIKHVLHYHLPRSADVYIHRSGRTAR 611
Query 733 ARGSKCFLLTSNAGVIEKEQINMYK----EKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
++ + + K +K N + Q + L +
Sbjct 612 GDNEGVSVMICSPQESMGPLRKLRKVLSTKKSSNPRKTKWQNDVPMLP----LEPDIVSQ 667
Query 789 FIRDSQEKPKPVPDKENKKLLCR 811
S+ + D+ K L +
Sbjct 668 LRERSKIASELADDEIATKSLHK 690
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/179 (23%), Positives = 69/179 (39%), Gaps = 11/179 (6%)
Query 206 TSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLELALPAMKGKNTIICA 264
+S++ I QE P SEN V F +P QL+ A+KG N + A
Sbjct 204 SSNVDIDDQEPPVLPEWSENMDLSFTVLKGLSGLGFTRPTEIQLKSIPLALKGHNIMGKA 263
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG----YR 320
TG GKT + L K + + F + Q K + + Y
Sbjct 264 STGSGKTLAYGIPIIEQLIKDTSNDRSIGLIFTPTRELAHQVTDHLQKVWTKMNKLNKYT 323
Query 321 VTGISGATAENVPVEQIVE---NNDIIILTPQILVNNLKKG--TIPSLSIFTLMIFDEC 374
+ ++G + E+I++ + II+ TP + L++ IP + ++ DE
Sbjct 324 ILSLTGGLSIQKQ-ERILKYDGSGRIIVATPGRFLELLERNPDLIPRFAKIDTLVLDEA 381
>sp|Q75AE1|ROK1_EREGS ATP-dependent RNA helicase ROK1 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=ROK1 PE=3 SV=1
Length=569
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/297 (19%), Positives = 110/297 (37%), Gaps = 36/297 (12%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN-LSQIQNREFGTQ 507
L Q V + V+ I K + Q+ + LA+RI + + LS +
Sbjct 181 LLQQVISDKAVGTGVKGLIISPTKELANQIFDECSKLAQRIFLEKKRPLSVALLSKSLAA 240
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
K + IV+ +K ++ P + + ++L L +++A + + ++ D L
Sbjct 241 KLKNQIVSDKKYDIIISTPLRLIDIVKSESLDLSAVKYLIFDEADKLFDKTFVEQTDDIL 300
Query 568 KD----------FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS-------NENPK 610
F + + ++ + + +T + E+ + + NE K
Sbjct 301 SACSHPNISKVLFSATLPSSVEELAQSIMTDPVRVIIGHKEAANTNIEQKLVFCGNEEGK 360
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQ 669
L + ++QE P I+F+++ AL + + +
Sbjct 361 LVAIRQLIQEGMFRPP---VIIFLESITRAKALFHELLYDKLNVDVI------------- 404
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ T ++ I++ FK SGD LI T V GID NLVI Y+ + +
Sbjct 405 HAERTQVQREKIIERFK-SGDLWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVH 460
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/252 (19%), Positives = 94/252 (37%), Gaps = 22/252 (9%)
Query 144 STKGMMAGAEKLVECL-LRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETE-DLE 201
+G E+L L + + P + E+ + + ++G +DV +
Sbjct 34 GQRGKDEDEEQLSRELDFFRTRRSVPAAAERPAEETGDAHRDETEQDEGAEDVAPPPRIT 93
Query 202 DKMETSDIQIFYQ----------EDPECQNLSENSCPPSEVSDTNLYSPF-KPRNYQLEL 250
E S ++ Y+ ++L + + + F +P Q E
Sbjct 94 TAEEASQLRRSYRGKVTGADAPLPIGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEA 153
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+++ ++ + CAPTG GKT L+ + G K + + + Q
Sbjct 154 IPISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAVGTGVKGLIISPTKELANQIFDE 213
Query 310 FSKYFE------RHGYRVTGISGATAENVPVEQIV-ENNDIIILTPQILVNNLKKGTIPS 362
SK + + V +S + A + + + + DIII TP L++ +K ++
Sbjct 214 CSKLAQRIFLEKKRPLSVALLSKSLAAKLKNQIVSDKKYDIIISTPLRLIDIVKSESLD- 272
Query 363 LSIFTLMIFDEC 374
LS +IFDE
Sbjct 273 LSAVKYLIFDEA 284
>sp|A6ZXU0|DBP10_YEAS7 ATP-dependent RNA helicase DBP10 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP10 PE=3
SV=1
Length=995
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/223 (21%), Positives = 83/223 (37%), Gaps = 31/223 (14%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQ--DLTQRFEEKLQELESVSR----DPSNENPK 610
+ +L ++ A +++ + E+LQ+L++ + D +EN +
Sbjct 347 KVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDR 406
Query 611 LEDLCFILQEEY---------HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ +E++ L E TILFV TR V+ + + G L
Sbjct 407 QKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD--------CGYL 458
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
+ + A+K L F+A G +IL+ T VA G+DI VI Y G+
Sbjct 459 I----SYIYGTLDQHARKRQLYNFRA-GLTSILVVTDVAARGVDIPMLANVINYTLPGSS 513
Query 722 IKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ G R +G ++ N + EK++
Sbjct 514 KIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGEKIL 556
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 17/198 (9%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSE---------------VSDTN 236
+E D ++ + Q ED + S N+ ++ +++
Sbjct 95 FPMLEMSD-DENNASGKTQTGDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIK 153
Query 237 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
+P Q + ++ ++ + A TG GKT +L LK + V
Sbjct 154 RKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVIL 213
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ + Q +VF + R ++G + ++ N D+II TP ++ LK
Sbjct 214 SPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH-LK 272
Query 357 KGTIPSLSIFTLMIFDEC 374
L ++FDE
Sbjct 273 VEMNLDLKSVEYVVFDEA 290
>sp|Q4IEK8|HAS1_GIBZE ATP-dependent RNA helicase HAS1 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=HAS1 PE=3 SV=2
Length=591
Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query 253 PAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
P++ G++ + A TG GKT + ++ L+ P+ G +V + + Q V
Sbjct 148 PSLAGRDVLGAAKTGSGKTLAFLIPVIEMLSSLRFKPRNGTGVIV-VSPTRELALQIFGV 206
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
+ H + G E++ + +++I TP L+++L+ ++ +L+
Sbjct 207 ARELMAHHSQTYGIVIGGANRRAEAEKLAKGVNLLIATPGRLLDHLQNTPFVFKNLKSLV 266
Query 370 IFDEC 374
I DE
Sbjct 267 I-DEA 270
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/297 (15%), Positives = 93/297 (31%), Gaps = 41/297 (14%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ ++ SL + + RE Q + + + + R
Sbjct 170 LIPVIEMLSSLRFKPRNGTGVIVVSPTRELALQIFGVARELMAHHSQTYGIVIGGANRRA 229
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+L +I+ R+ D L F N+++ DE ++ L FE+++
Sbjct 230 EAEKLAKGVNL-------LIATPGRLLDHLQNTPFVFKNLKSLVIDEADRILEIGFEDEM 282
Query 595 QELESVSRDPSNENP--------KLEDLCFI-------------LQEEYHLNPETITILF 633
+++ V + K+EDL I ++ + +
Sbjct 283 RQIIKVLPKEDRQTMLFSATQTTKVEDLARISLRPGPLYINVDEEKQYSTVEGLEQGYII 342
Query 634 VKTRALVDALKNWIEGNPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCIL 682
+T L ++++ N K + + + + QK
Sbjct 343 CETDMRFLLLFSFLKRNLKKKIIVFFSSCACVKYHAELLNYIDLPVLDLHGKQKQQKRTN 402
Query 683 DAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
F+ + LI T VA G+DI + +I ++ + I GR R +K
Sbjct 403 TFFEFCNAKQGTLICTDVAARGLDIPSVDWIIQFDPPDDPRDYIHRVGRTARGSNNK 459
>sp|Q31ES7|UVRB_HYDCU UvrABC system protein B OS=Hydrogenovibrio
crunogenus (strain DSM 25203 / XCL-2) OX=317025 GN=uvrB PE=3
SV=1
Length=678
Score = 68.3 bits (165), Expect = 2e-10, Method: Composition-based stats.
Identities = 46/281 (16%), Positives = 99/281 (35%), Gaps = 44/281 (16%)
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE-EYHLNPET 628
F S E E + ++ L+ V P L + +L E + E
Sbjct 391 FVSATPGKYEAEHESKIVEQVVRPTGLLDPVL----EVRPALTQVDDLLGEIRLRVEKEE 446
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++ T+ + + L ++E + ++ L ++ + + I+ +
Sbjct 447 RVLVTTLTKRMAENLTEYLEEH----NVRVRYL--------HSDIDTVERIEIIRDLRL- 493
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLT 742
G+ ++L+ ++ EG+DI + +LV + + + +IQT GR R K L
Sbjct 494 GEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSDRSLIQTIGRAARNVAGKAIL-- 551
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK-PVP 801
A I K E + ++ + +K+ ++K ++ P P P
Sbjct 552 -YADKITKSMQKAIDETERRRAKQIQHNTEQGITPQKL-----NKKITDILEDSPYAPKP 605
Query 802 DKENKKLLCR-----------KCKALACYTADVRVIEECHY 831
KL + A ++++ +E+ Y
Sbjct 606 GASAAKLKAAEADGEYSPQEMQRMTPAQLASEIKRMEKQMY 646
>sp|Q55CP6|DDX1_DICDI Probable ATP-dependent RNA helicase ddx1
OS=Dictyostelium discoideum OX=44689 GN=ddx1 PE=3 SV=1
Length=765
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/134 (24%), Positives = 49/134 (37%), Gaps = 6/134 (4%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL-PAQKCILDAFKA 687
I+F +TR D + +++ + G+ T + G + A+K L+ F+
Sbjct 536 QAIIFARTRLDCDHIHQFLKDAGGGN--TSGLEGEFSSTVLHGGDNISRARKDNLEKFR- 592
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA--RGSKCFLLTSNA 745
+GD LI T VA GIDI +I Y + I GR R L +
Sbjct 593 NGDVRFLICTDVAARGIDIRGLPYMINYTLPESFEDYIHRVGRVGRSDRIGLAISLVAYE 652
Query 746 GVIEKEQINMYKEK 759
K K
Sbjct 653 QEKVWYHTCRDKGK 666
Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 67/200 (34%), Gaps = 20/200 (10%)
Query 278 CEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV---FSKYFERHGYRVTGISGATAENVPV 334
Q +K + + +Q S FSKY + +V+ G N
Sbjct 306 MNDEDNNNKQPRKTLSLIIEPTRELADQAYSAILNFSKYLDSPKIQVSLCIGGEKSNGGR 365
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 394
+I DIII TP L + +K+G+I LS + DE N+ + N++ K
Sbjct 366 NKI--EGDIIIGTPGRLESLVKEGSID-LSSIKFFVLDEADQLIDD---NLAIVNFIYNK 419
Query 395 LGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVY 454
L QV+ +A++ + C+ V + + +L Y
Sbjct 420 LPIGQNL--QVLFFSATL-------HSTKVIKFCEQITKNPTWVDLKGRDFIPDLITHAY 470
Query 455 KPQ--KFFRKVESRISDKFK 472
F + + +
Sbjct 471 VKADPIKFESLWRNSENPLR 490
>sp|P20448|DBP4_YEAST ATP-dependent RNA helicase HCA4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HCA4
PE=1 SV=2
Length=770
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/272 (16%), Positives = 84/272 (31%), Gaps = 27/272 (10%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
+ + Q ++ G ++ + +A M K I L L
Sbjct 166 LIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL--- 222
Query 549 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 608
+ + + D + ++ + G ++ + + L+ + +
Sbjct 223 -----LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
KL+ L ++ I+F+ + K ++PGI
Sbjct 278 -KLDILFSFIKSHLK----CKMIVFL------SSSKQVHFVYETFRKMQPGISLMHLHGR 326
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q A+ LD F + L AT V GID + V+ + +V I
Sbjct 327 Q----KQRARTETLDKFNRAQQV-CLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRV 381
Query 729 GR-GR--ARGSKCFLLTSNAGVIEKEQINMYK 757
GR R +G +LT +++N K
Sbjct 382 GRCARYGKKGKSLIMLTPQEQEAFLKRLNARK 413
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 49/133 (37%), Gaps = 3/133 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q + +++G + + A TG GKT L+ L + + + +
Sbjct 68 QADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAM 127
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V +K H G+ + + + +I+I TP ++ +L + + S
Sbjct 128 QIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTS 186
Query 365 IFTLMIFDECHNT 377
+++ DE
Sbjct 187 NLQMLVLDEADRC 199
>sp|Q81E85|CSHC_BACCR DEAD-box ATP-dependent RNA helicase CshC
OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414
/ JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
OX=226900 GN=cshC PE=2 SV=1
Length=389
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + ++G++ I +PTG GKT LL H + P+ ++ +VV A + Q
Sbjct 25 QKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKIN--PEVKQPQVVVLAPTRELVMQI 82
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
K+ + G VE++ ++ +I+ +P ++ ++ + +
Sbjct 83 HEEVQKFTAGTEISGASLIGGADIKRQVEKLKKHPRVIVGSPGRILELIRMKKL-KMHEV 141
Query 367 TLMIFDE 373
++FDE
Sbjct 142 KTIVFDE 148
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/76 (29%), Positives = 33/76 (43%), Gaps = 3/76 (4%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + ++ + AF+ G IL+AT +A GIDI VI E V + I G
Sbjct 265 HAEASKQEREATMRAFR-GGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSG 323
Query 730 R-GRA-RGSKCFLLTS 743
R GR + L +
Sbjct 324 RTGRMGKEGTVVSLVT 339
>sp|P21372|PRP5_YEAST Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) OX=559292 GN=PRP5 PE=1 SV=1
Length=849
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/333 (15%), Positives = 114/333 (34%), Gaps = 31/333 (9%)
Query 460 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA 519
R V + K I L R TE + + ++ L+ + T++ V + +A
Sbjct 360 IRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRIT--FVVMDEA 417
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH--ARMKDALDYLKDFFSNVRAA 577
+F + + + ++I K +R ++ S +++ + ++
Sbjct 418 DRLFDLGFEPQITQIMKT-------VRPDKQCVLFSATFPNKLRSFAVRVLHSPISITIN 470
Query 578 GFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE-----TITIL 632
+ +++ Q+F E E + + E + E + + I+
Sbjct 471 SKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAII 530
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV ++ + D + + G + G + L+ FK ++
Sbjct 531 FVSSQNICDFISKKLLN------------AGIVTCAIHAGKPYQERLMNLEKFKRE-KNS 577
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 750
IL+ T V G+++ + +LVI+Y V + + T GR R R L + +
Sbjct 578 ILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGA 637
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
++ ++ LQ + K
Sbjct 638 YILSKAMRDEEIKALDPLQAKELQEMSAKFESG 670
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/394 (15%), Positives = 129/394 (33%), Gaps = 36/394 (9%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPV 302
Q + M G++ I + TG GKT LL +K K + + A +
Sbjct 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL 342
Query 303 YEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
Q +K+ E R +G + + + +I++ TP ++ L G
Sbjct 343 ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK 402
Query 360 IPSLSIFTLMIFDECHNT--SKQHP-YNMIMFNYLDQKLGGSSGPLP---------QVIG 407
+ S T ++ DE P IM K +V+
Sbjct 403 LLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH 462
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
S+ + +E + ++C S D + L Q++++ +FF +V+S
Sbjct 463 SPISITINSKGMVNENVKQKFRICHSEDEK--------FDNLVQLIHERSEFFDEVQSEN 514
Query 468 SDKFKYIIAQLMRD-----TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
+ + + ++++ I K L N + + Y++ ++ ++K
Sbjct 515 DGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKRE 574
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
E S + YN +++ + + DE+
Sbjct 575 KNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDEL 634
Query 583 EQDLTQRFEEKLQELESV----SRDPSNENPKLE 612
+ +E++++ +++ + K E
Sbjct 635 SGAYILSKAMRDEEIKALDPLQAKELQEMSAKFE 668
>sp|A6ZLH6|PRP5_YEAS7 Pre-mRNA-processing ATP-dependent RNA helicase
PRP5 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796
GN=PRP5 PE=3 SV=1
Length=849
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 51/333 (15%), Positives = 114/333 (34%), Gaps = 31/333 (9%)
Query 460 FRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA 519
R V + K I L R TE + + ++ L+ + T++ V + +A
Sbjct 360 IRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRIT--FVVMDEA 417
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH--ARMKDALDYLKDFFSNVRAA 577
+F + + + ++I K +R ++ S +++ + ++
Sbjct 418 DRLFDLGFEPQITQIMKT-------VRPDKQCVLFSATFPNKLRSFAVRVLHSPISITIN 470
Query 578 GFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE-----TITIL 632
+ +++ Q+F E E + + E + E + + I+
Sbjct 471 SKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVEEVDAKAII 530
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV ++ + D + + G + G + L+ FK ++
Sbjct 531 FVSSQNICDFISKKLLN------------AGIVTCAIHAGKPYQERLMNLEKFKRE-KNS 577
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEK 750
IL+ T V G+++ + +LVI+Y V + + T GR R R L + +
Sbjct 578 ILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGA 637
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
++ ++ LQ + K
Sbjct 638 YILSKAMRDEEIKALDPLQAKELQEMSAKFESG 670
Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/394 (15%), Positives = 129/394 (33%), Gaps = 36/394 (9%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPV 302
Q + M G++ I + TG GKT LL +K K + + A +
Sbjct 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL 342
Query 303 YEQQKSVFSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK--KGT 359
Q +K+ E R +G + + + +I++ TP ++ L G
Sbjct 343 ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK 402
Query 360 IPSLSIFTLMIFDECHNT--SKQHP-YNMIMFNYLDQKLGGSSGPLP---------QVIG 407
+ S T ++ DE P IM K +V+
Sbjct 403 LLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH 462
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
S+ + +E + ++C S D + L Q++++ +FF +V+S
Sbjct 463 SPISITINSKGMVNENVKQKFRICHSEDEK--------FDNLVQLIHERSEFFDEVQSEN 514
Query 468 SDKFKYIIAQLMRD-----TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
+ + + ++++ I K L N + + Y++ ++ ++K
Sbjct 515 DGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKRE 574
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
E S + YN +++ + + DE+
Sbjct 575 KNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDEL 634
Query 583 EQDLTQRFEEKLQELESV----SRDPSNENPKLE 612
+ +E++++ +++ + K E
Sbjct 635 SGAYILSKAMRDEEIKALDPLQAKELQEMSAKFE 668
>sp|A5E2Z9|HAS1_LODEL ATP-dependent RNA helicase HAS1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=HAS1 PE=3 SV=1
Length=559
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/226 (20%), Positives = 80/226 (35%), Gaps = 45/226 (20%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP- 609
L+++ R+ D L + F F N++A DE ++ L FEE+++++ + + +
Sbjct 218 LLVATPGRLLDHLKNTQGFVFLNLKALVIDEADRILEIGFEEEMKQIIKILPNEDRQTML 277
Query 610 -------KLEDLCFILQEEYHLNPETITILFVKTRA--LVDALKN-----------WIEG 649
K+EDL I L P + I V + D L+ +
Sbjct 278 FSATQTTKVEDLARI-----SLRPGPLYINVVPEKDVSTADGLEQGYVVCDSDKRFLLLF 332
Query 650 NPKLSFLKPGILTGRGKTNQ----------------NTGMTLPAQKCILDAFKA-SGDHN 692
+ +K I+ N + QK F+ +
Sbjct 333 SFLKRNIKKKIIVFLSSCNSVKFYSELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQG 392
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
IL+ T VA G+DI + +I ++ + I GR R K
Sbjct 393 ILVCTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTDGK 438
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 12/135 (9%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLI---CEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P + G++ + A TG GKT LL + LK P+ V+ +
Sbjct 120 QAKTIPPLLAGRDVLGAAKTGSGKTLAFLLPAVELLYSLKIKPRNGTA-VIIITPTRELA 178
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + E H + G ++ + ++++ TP L+++LK G +
Sbjct 179 LQIFGVARQLMEYHSQTCGIVIGGADRRQEATKLAKGVNLLVATPGRLLDHLKNTQGFVF 238
Query 362 SLSIFTL--MIFDEC 374
L ++ DE
Sbjct 239 ----LNLKALVIDEA 249
>sp|A6ZPU3|DBP4_YEAS7 ATP-dependent RNA helicase DBP4 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP4 PE=3 SV=1
Length=770
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/272 (16%), Positives = 84/272 (31%), Gaps = 27/272 (10%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
+ + Q ++ G ++ + +A M K I L L
Sbjct 166 LIGTPGRILQHLDQAVGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSTLSPSRQTL--- 222
Query 549 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 608
+ + + D + ++ + G ++ + + L+ + +
Sbjct 223 -----LFSATQSQSVADLARLSLTDYKTVGTHDVMDGSVNKEASTPETLQQFYIEVPLAD 277
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
KL+ L ++ I+F+ + K ++PGI
Sbjct 278 -KLDILFSFIKSHLK----CKMIVFL------SSSKQVHFVYETFRKMQPGISLMHLHGR 326
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q A+ LD F + L AT V GID + V+ + +V I
Sbjct 327 Q----KQRARTETLDKFNRAQQV-CLFATDVVARGIDFPAVDWVVQVDCPEDVDTYIHRV 381
Query 729 GR-GR--ARGSKCFLLTSNAGVIEKEQINMYK 757
GR R +G +LT +++N K
Sbjct 382 GRCARYGKKGKSLIMLTPQEQEAFLKRLNARK 413
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 49/133 (37%), Gaps = 3/133 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q + +++G + + A TG GKT L+ L + + + +
Sbjct 68 QADSIPVSLQGHDVLAAAKTGSGKTLAFLVPVIEKLYREKWTEFDGLGALIISPTRELAM 127
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V +K H G+ + + + +I+I TP ++ +L + + S
Sbjct 128 QIYEVLTKI-GSHTSFSAGLVIGGKDVKFELERISRINILIGTPGRILQHLDQAVGLNTS 186
Query 365 IFTLMIFDECHNT 377
+++ DE
Sbjct 187 NLQMLVLDEADRC 199
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=tlh2
PE=2 SV=1
Length=1919
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 70/190 (37%), Gaps = 13/190 (7%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
R +E P + L DL +++ + I+F +T+ V+ +
Sbjct 1374 YVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHR 1433
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGI 704
+ + + I TG ++ ++ DAF+ A+G I+IAT GI
Sbjct 1434 RLHQSDLFAHTHVTIYTG--------DVSDEERQMNFDAFRNANGKTRIMIATKAFGLGI 1485
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC---FLLTSNAGVIEKEQINMYKEKMM 761
+ LV+ Y + + +Q GR R K L + + +
Sbjct 1486 NYMGVRLVVHYGLPASSMDYVQETGRAG-RDGKYAIAALFYEKYDSTWSSYVEDSMKNFL 1544
Query 762 NDSILRLQTW 771
ND+ + ++++
Sbjct 1545 NDNTMCVRSF 1554
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 50/288 (17%), Positives = 94/288 (33%), Gaps = 43/288 (15%)
Query 119 IPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
+P+D ++ + + +E+LQI E + R D+ L+ AL ++
Sbjct 1050 LPSDYFANFFRA--SYKWQELLQIRDNPTHGLLVETKHPFIKRVDQ------LEEALNEK 1101
Query 179 RNKFSELWIV--EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTN 236
+ +V +K E +D+++ Q +D + P + +
Sbjct 1102 LARLVGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHY 1161
Query 237 LYSPFKP-------------RNYQLELALPAMKG-----------KNTIICAPTGCGKTF 272
+P + Y LE ++K N I PTG GK+
Sbjct 1162 RPGLLQPSQTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSL 1221
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+ ++K Q GKV+ + + + + SG
Sbjct 1222 --SFLIPALIEKKRQT-PGKVMNMVTLV-LVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277
Query 333 PVEQIVENN--DIIILTPQILVNNLKKGTIPSLS---IFTLMIFDECH 375
V +E D+ ILT + + N SL+ ++ DE H
Sbjct 1278 DVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAH 1325
>sp|P0CT33|TLH1_SCHPO ATP-dependent DNA helicase tlh1 (Fragment)
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812
GN=tlh1 PE=3 SV=1
Length=1887
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/190 (18%), Positives = 70/190 (37%), Gaps = 13/190 (7%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
R +E P + L DL +++ + I+F +T+ V+ +
Sbjct 1374 YVLRETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHR 1433
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNILIATSVADEGI 704
+ + + I TG ++ ++ DAF+ A+G I+IAT GI
Sbjct 1434 RLHQSDLFAHTHVTIYTG--------DVSDEERQMNFDAFRNANGKTRIMIATKAFGLGI 1485
Query 705 DIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKC---FLLTSNAGVIEKEQINMYKEKMM 761
+ LV+ Y + + +Q GR R K L + + +
Sbjct 1486 NYMGVRLVVHYGLPASSMDYVQETGRAG-RDGKYAIAALFYEKYDSTWSSYVEDSMKNFL 1544
Query 762 NDSILRLQTW 771
ND+ + ++++
Sbjct 1545 NDNTMCVRSF 1554
Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 50/288 (17%), Positives = 94/288 (33%), Gaps = 43/288 (15%)
Query 119 IPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKE 178
+P+D ++ + + +E+LQI E + R D+ L+ AL ++
Sbjct 1050 LPSDYFANFFRA--SYKWQELLQIRDNPTHGLLVETKHPFIKRVDQ------LEEALNEK 1101
Query 179 RNKFSELWIV--EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTN 236
+ +V +K E +D+++ Q +D + P + +
Sbjct 1102 LARLVGEQMVEGDKEKDKTNEEKNKDEVKAEMTQPVVNQDSHDLQDQLATTPTAPTAFHY 1161
Query 237 LYSPFKP-------------RNYQLELALPAMKG-----------KNTIICAPTGCGKTF 272
+P + Y LE ++K N I PTG GK+
Sbjct 1162 RPGLLQPSQTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSL 1221
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+ ++K Q GKV+ + + + + SG
Sbjct 1222 --SFLIPALIEKKRQT-PGKVMNMVTLV-LVPMMSLRQDMMLRVNEKGLLVCSGNWTAFK 1277
Query 333 PVEQIVENN--DIIILTPQILVNNLKKGTIPSLS---IFTLMIFDECH 375
V +E D+ ILT + + N SL+ ++ DE H
Sbjct 1278 DVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVIDEAH 1325
>sp|Q12389|DBP10_YEAST ATP-dependent RNA helicase DBP10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=DBP10 PE=1 SV=2
Length=995
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 17/198 (9%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSE---------------VSDTN 236
+E D ++ + Q ED + S N+ ++ +++
Sbjct 95 FPMLEMSD-DENNASGKTQTGDDEDDVNEYFSTNNLEKTKHKKGSFPSFGLSKIVLNNIK 153
Query 237 LYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
+P Q + ++ ++ + A TG GKT +L LK + V
Sbjct 154 RKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVIL 213
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ + Q +VF + R ++G + ++ N D+II TP ++ LK
Sbjct 214 SPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLH-LK 272
Query 357 KGTIPSLSIFTLMIFDEC 374
L ++FDE
Sbjct 273 VEMNLDLKSVEYVVFDEA 290
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 78/207 (38%), Gaps = 31/207 (15%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQ--DLTQRFEEKLQELESVSR----DPSNENPK 610
+ +L ++ A +++ + E+LQ+L++ + D +EN +
Sbjct 347 KVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDR 406
Query 611 LEDLCFILQEEY---------HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ +E++ L E TILFV TR V+ + + G L
Sbjct 407 QKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQLLRD--------CGYL 458
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
+ + A+K L F+A G +IL+ T VA G+DI VI Y G+
Sbjct 459 I----SYIYGTLDQHARKRQLYNFRA-GLTSILVVTDVAARGVDIPMLANVINYTLPGSS 513
Query 722 IKMIQTRG---RGRARGSKCFLLTSNA 745
+ G R +G ++ N
Sbjct 514 KIFVHRVGRTARAGNKGWAYSIVAENE 540
>sp|Q5H9U9|DDX6L_HUMAN Probable ATP-dependent RNA helicase DDX60-like
OS=Homo sapiens OX=9606 GN=DDX60L PE=2 SV=3
Length=1706
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 99/594 (17%), Positives = 180/594 (30%), Gaps = 112/594 (19%)
Query 241 FKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQI 300
F P +Q EL K ++ +I APT GKT+ S E L+ + G VV+ A
Sbjct 742 FIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLR---ESDVGVVVYVAPAK 798
Query 301 PVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q + F + + GA + V N ++I P+ L
Sbjct 799 SLVGQVAATVENRFTKTLPAGRTLCGAFTRDYC--HNVLNCQVLITVPECFEILLLAPHR 856
Query 361 PS-LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA-- 417
+ +IFDE H + + + + L P + L+A++ +
Sbjct 857 QKWVERIRYVIFDEVH-----YLGREVGAKFWELLLVIIRCPF---LVLSATINNPNLLT 908
Query 418 ----------KNTDEALDYICKLCASLD------------------------------AS 437
K D+ ++ C D
Sbjct 909 KWLQSVKQYWKQADKIMEEKCISEKQADKCLNFLQDHSYKNQSYEVRLVLCGERYNDLEK 968
Query 438 VIATVKHNL--------------EELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRDT 482
I +VKH+ + +E+ + P ES ++ D + R
Sbjct 969 HICSVKHDDVYFDHFHPCAALTTDIIEKYGFPPDLTLTPQESIQLYDTMAQVWETWPRAQ 1028
Query 483 ESLAKRIC--KDLENLSQIQNREFG---TQKYEQWI----VTVQKACMVFQMPDKDEESR 533
E + K+ + ++ R++ + WI V K + PD S+
Sbjct 1029 ELCPEEFILFKNKIVIKKLDARKYEENLKAELTNWIKNGQVKKVKRVLKNLSPDSLSSSK 1088
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD----FFSNVRAAGFDEIE-QDLTQ 588
+F + D L D + F E
Sbjct 1089 DMVKMFPLLVEKLRQMDKLPAIFFLFKNDDVGKRAGSVCTFLEKTETKSHPHTECHSYVF 1148
Query 589 RFEEKLQELESVSRDPSNENPK------------------LEDLCFILQEEYHLNPETIT 630
+E L+++ + + +NPK LE+L + E +
Sbjct 1149 AIDEVLEKVRKTQKRITKKNPKKAEKLERKKVYRAEYINFLENLKILEISEDCTYADVKA 1208
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPG----ILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ TR L+ + P++ F + G L RG ++ M ++ + F
Sbjct 1209 LHTEITRNKDSTLERVL---PRVRFTRHGKELKALAQRGIGYHHSSMYFKEKEFVEILF- 1264
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEY-VGNVIKMIQTRGRGRARGSKCF 739
G ++ AT GI + ++V + + + Q GR RG
Sbjct 1265 VKGLIRVVTATETLALGIHMPCKSVVFAQDSVYLDALNYRQMSGRAGRRGQDLL 1318
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium
leprae (strain TN) OX=272631 GN=helY PE=3 SV=1
Length=920
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/136 (20%), Positives = 54/136 (40%), Gaps = 15/136 (11%)
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
PF ++Q +G ++CAPTG GKT + GK +
Sbjct 15 PFSLDDFQQRACAALERGHGVLVCAPTGAGKT-----VVGEFAVHLALAAGGKCFYTTPL 69
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q+ + + + R+ R+ ++G + N ++++T ++L N L
Sbjct 70 KALSNQKYTDLTARYGRN--RIGLLTGDQSVNGDSP-------VVVMTTEVLRNML-YAD 119
Query 360 IPSLSIFTLMIFDECH 375
+L + ++ DE H
Sbjct 120 SFALQGLSHVVMDEVH 135
>sp|Q757U8|DBP10_EREGS ATP-dependent RNA helicase DBP10 OS=Eremothecium
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923
/ NRRL Y-1056) OX=284811 GN=DBP10 PE=3 SV=1
Length=960
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ ++ + A TG GKT +L LK + + + + Q VF ++
Sbjct 155 LQQRDIVGMARTGSGKTAAFVLPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFA 214
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R ++G ++ N D+II TP ++ LK L ++FDE
Sbjct 215 KGSNLRSVLLTGGDGLEDQFSMMMSNPDVIIATPGRFLH-LKVEMNLDLHSIEYVVFDEA 273
Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + TI+FV TR V+ + N ++ G L + + A
Sbjct 401 LPSAKDMPSPNSTIIFVSTRHHVEYVSNLLKD--------CGYLV----SYLYGTLDQHA 448
Query 678 QKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRAR 734
++ L F+ G NIL+ T VA G+DI V+ + + G R +
Sbjct 449 RRQQLHNFRC-GLTNILVVTDVAARGVDIPLLANVVNMSLPASSKIFVHRVGRTARAGNK 507
Query 735 GSKCFLLTSNA 745
G +L+ +
Sbjct 508 GWAYTILSESE 518
>sp|Q7S2N9|HAS1_NEUCR ATP-dependent RNA helicase has-1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=has-1 PE=3 SV=1
Length=578
Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/299 (16%), Positives = 94/299 (31%), Gaps = 45/299 (15%)
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
+ + SL + + RE Q + ++ + + R
Sbjct 162 LIPAIEMLSSLRFKPRNGTGAIVVTPTRELALQIFGVARELMKNHSQTYGVVIGGANRR- 220
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
L K + L+I+ R+ D L F N+R+ DE ++ L FE+++
Sbjct 221 -----AEAEKLGKGVN-LLIATPGRLLDHLQNTPFVFKNMRSLIIDEADRILEIGFEDEM 274
Query 595 QELESVSRDPSNENP--------KLEDLCFI------LQEEYHLNPETITI-------LF 633
+++ + + K+EDL I L + T+ +
Sbjct 275 RQIIKILPKEDRQTMLFSATQTTKVEDLARISLRPGPLYVNVDEEKQFSTVEGLDQGYVV 334
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD---AFKASGD 690
V L ++++ K + + + + +LD K
Sbjct 335 VDADKRFLLLFSFLKKMQKKKVI--VFFSSCNSVKYYSELLQYIDLQVLDLHGKQKQQKR 392
Query 691 HNI-----------LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
N LI T VA G+DI + ++ ++ + I GR R +K
Sbjct 393 TNTFFEFCNAKQGTLICTDVAARGLDIPAVDWIVQFDPPDDPRDYIHRVGRTARGNNTK 451
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ GK+ + A TG GKT + + L+ P+ G +V + Q V
Sbjct 142 LAGKDVLGAAKTGSGKTLAFLIPAIEMLSSLRFKPRNGTGAIV-VTPTRELALQIFGVAR 200
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ + H + G E++ + +++I TP L+++L+ ++ +L I
Sbjct 201 ELMKNHSQTYGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNMRSL-II 259
Query 372 DEC 374
DE
Sbjct 260 DEA 262
>sp|Q27268|DX39B_DROME ATP-dependent RNA helicase WM6 OS=Drosophila
melanogaster OX=7227 GN=Hel25E PE=1 SV=1
Length=424
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 64/363 (18%), Positives = 127/363 (35%), Gaps = 43/363 (12%)
Query 405 VIGL----TASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 460
V+G+ A G+G K L + +L S + + V + EL + K + F
Sbjct 76 VLGMDILCQAKSGMG--KTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERF 133
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKR----ICKDLENLSQIQNREFGTQKYEQWIVTV 516
K + + + +D E+L + + + + K + V
Sbjct 134 SKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLD 193
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
+ M+ Q+ + + I ++ + + ++ L KD K F +
Sbjct 194 ECDKMLEQLDMRRDVQEIFRS-TPHGKQVMMFSATL-------SKDIRPVCKKFMQDPME 245
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
D+ + L L+ + EN K + L +L ++FVK+
Sbjct 246 VYVDD-------EAKLTLHGLQQHYVNL-KENEKNKKLFELLDVLEF----NQVVIFVKS 293
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
AL + +F GI + GMT + FK IL+A
Sbjct 294 VQRCVALSQLLTEQ---NFPAIGI---------HRGMTQEERLNRYQQFK-DFQKRILVA 340
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
T++ G+DI + N+V Y+ + + R G+K +T + + + +N
Sbjct 341 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV 400
Query 757 KEK 759
+++
Sbjct 401 QDR 403
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 21/195 (11%)
Query 196 ETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF-----------KPR 244
+ D ED+ +T + QE P+ S L P P
Sbjct 6 DLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPS 65
Query 245 NYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
Q E A+ G + + A +G GKT V +L L+ V+ + +
Sbjct 66 EVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDN-NTCHVLVMCHTRELAF 124
Query 305 Q---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGT 359
Q + FSKY +V G A E+ +++ I++ TP ++ L +
Sbjct 125 QISKEYERFSKYMP--TVKVAVFFGGMAIQK-DEETLKSGTPHIVVGTPGRIL-ALIRNK 180
Query 360 IPSLSIFTLMIFDEC 374
+L + + DEC
Sbjct 181 KLNLKLLKHFVLDEC 195
>sp|Q0DWT8|RH1_ORYSJ DEAD-box ATP-dependent RNA helicase 1 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os02g0795900 PE=2 SV=1
Length=521
Score = 67.1 bits (162), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/337 (18%), Positives = 101/337 (30%), Gaps = 37/337 (11%)
Query 405 VIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVE 464
V+GL+ VG A D + L + ++ ++E PQ
Sbjct 136 VVGLS----VGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQME-----PQTKV---- 182
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
D +LM + L+ L + + Y+ W+ TV +
Sbjct 183 ----DILVATPGRLMDHISMTKGFSLEHLQYLVVDETDRMLREAYQSWLPTVIQLTRSSD 238
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA-GFDEIE 583
+ L + +R+ + + A L + + E++
Sbjct 239 QNH-SWSDMNGETLLHPLTTIRRSGVERGFKGKSFPRLAKIVLSATLTQDPSKLSQLELQ 297
Query 584 QDLTQRFEEKLQELESVSRDPS---NENPKLEDLCFILQEEYHLNPETITILFVKTRALV 640
L +K + + + N K L +LQE ++F +
Sbjct 298 HPLLLNSGKKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQEL----RGEKCLVFTSSVESS 353
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
L +E L F + ++ LDAFK G ++LI T
Sbjct 354 HRLSTLLEFFEDLPFKFSEY---------SRLQRESTRRKTLDAFK-EGKIDVLIGTDRM 403
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
GI I VI Y+ V I GR RA S
Sbjct 404 ARGIHIDGLRYVINYDMPPYVKTYIHRAGRTARAGES 440
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 22/147 (15%)
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQK 307
LE P ++ I +PTG GKT L L + + + + + Q K
Sbjct 69 LETIGPGAFERDICINSPTGSGKTLAYALPIVQMLAT-RKVRCLRALVVLPTRDLALQVK 127
Query 308 SVFSKYFERHGYRVTGISGATAENVPVEQIVE---------------------NNDIIIL 346
VF G V G ++ V ++E DI++
Sbjct 128 EVFDAIAPVVGLSVGSAVGQSSIADEVSNLIEKSKQGLFPSLDEEYIQMEPQTKVDILVA 187
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDE 373
TP L++++ SL ++ DE
Sbjct 188 TPGRLMDHISMTKGFSLEHLQYLVVDE 214
>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=SPB4 PE=3 SV=1
Length=637
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 66/196 (34%), Gaps = 16/196 (8%)
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
+ KL L +L++ +I+F+ T A VD ++ + F +
Sbjct 278 SQKLPALAELLRQLPVRPQ--RSIVFLSTCAAVDYFQHILPLILPEGFALVPLHGKHAAK 335
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+ F +S IL+ T +A G+DI Q +LV+ + + I
Sbjct 336 VREKNFN---------KFLSSVSPTILLTTDLAARGLDIPQVDLVVQIDAPSDPKVFIHR 386
Query 728 RGRGRA--RGSKCFLLTSNAGVIEKEQINMYKEK---MMNDSILRLQTWDEAVFREKILH 782
GR R ++ + Q ++ + + D A F +K
Sbjct 387 SGRAGRAGRKGLAVVMLHPGREEDYVQFLEIRKTPIAPLEKPTITTSEDDAAEFAKKTRD 446
Query 783 IQTHEKFIRDSQEKPK 798
++ + D +K
Sbjct 447 FVLTDRGLFDKAQKAF 462
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 48/147 (33%), Gaps = 29/147 (20%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---VVFFANQIPVYEQQKSVFSKY 313
K+ ++ A TG GKT L+ L + + K + + + Q +V K
Sbjct 51 NKDVVVEAVTGSGKTLAFLIPLVQKLLRLSEPTKKHHVAAIIVSPTRELAAQIHTVLMKL 110
Query 314 FERHGYRVTGIS-----------------------GATAENVPVEQIVENN--DIIILTP 348
+ H + G T V + + +++I +P
Sbjct 111 LQFHEASAEILPHLKDDDEKRPFTTVPAIVPQLLVGGTTTTVQDLRFFLRHSPNVLISSP 170
Query 349 QILVNNLKKGTIPSL-SIFTLMIFDEC 374
LV + + S F +++ DE
Sbjct 171 GRLVELMSSPHVHCPQSSFEVLVLDEA 197
>sp|A7MIC1|RAPA_CROS8 RNA polymerase-associated protein RapA OS=Cronobacter
sakazakii (strain ATCC BAA-894) OX=290339 GN=rapA
PE=3 SV=1
Length=968
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 70/522 (13%), Positives = 156/522 (30%), Gaps = 87/522 (17%)
Query 241 FKPRNYQLE---LALPAMKGK--NTI-------------------ICAPTGCGKTFVSLL 276
++ R YQ E + ++G+ N I + G GKT + +
Sbjct 130 YRARKYQSEQYRMPWSGLRGQRTNLIPHQLNIANDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGA--TAENVPV 334
I L G +V+ + Q + R R +
Sbjct 190 IIHQQL---LAGAAERVLIVVPE----TLQHQWLVEMLRRFNLRFSLFDDERYAEAQHES 242
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ + ++I + + N ++ + + L++ DE H+ S+ P
Sbjct 243 DNPFDTEQLVICSLDFVRRNKQRLEHLCDAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAERVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQQNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREF-GTQKY 509
V + +SD+ +++L+ + +D+E L Q N + G +
Sbjct 354 DAVA-----LLLAGTHLSDEQLNTLSELIGE---------QDIEPLLQTANSDRDGAESA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPQRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE S + L +
Sbjct 459 --SAEERARDMLYPEQIYQEFE-----------GDSGTWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASQLVMFDLPFNPDLLEQRIGR 596
>sp|A5E3W5|SUB2_LODEL ATP-dependent RNA helicase SUB2 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SUB2 PE=3 SV=1
Length=433
Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (38%), Gaps = 21/156 (13%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L I+FVK+ + L + +F + +G
Sbjct 276 EEKEKNRKLSDLLDSLEF----NQVIIFVKSTQRANELNKLLC---ACNFPSIAVHSGLP 328
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
Q+ ++ +K+ + N I ++T V GIDI + NL I Y+ +
Sbjct 329 ------------QEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQ 376
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ GR G+K ++ + ++E + + +
Sbjct 377 YLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSR 412
Score = 43.2 bits (100), Expect = 0.009, Method: Composition-based stats.
Identities = 32/140 (23%), Positives = 53/140 (38%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q ++ G + + A +G GKT V +L L V+ +
Sbjct 71 HPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEISTLVI--CHTRE 128
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY V G T +E+ ++N D I++ TP L +
Sbjct 129 LAYQIRNEYARFSKYMPDVKTEV--FYGGTPVKRDIEK-LKNKDTCPHIVVATPGRL-HA 184
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + L+ + DEC
Sbjct 185 LVQEKAIRLNNVKSFVIDEC 204
>sp|Q0UMB9|DBP4_PHANO ATP-dependent RNA helicase DBP4 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP4 PE=3 SV=1
Length=803
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 51/268 (19%), Positives = 95/268 (35%), Gaps = 35/268 (13%)
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKD-----ALDYLKDFFSNVRAAGFDEIEQD- 585
R+ + L + L L++ E R+ D +D + D+ R Q
Sbjct 181 GRMLQHLSQTAAFLVDDLKMLVLDEADRILDMGFQRDVDAIIDYLPKERQTLLFSATQSK 240
Query 586 -LTQRFEEKLQELESVSRDPSNEN--PK----------LEDLCFILQEEYHLNPETITIL 632
++ LQ+ E VS +++ PK LE+ L + ++ ++
Sbjct 241 KVSDLARLSLQDPEYVSVHAEDKSATPKSLQQNYIICPLEEKLDTLWSFIQASKKSKILV 300
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
F + V + ++PGI Q G A+ F +S ++
Sbjct 301 FFSSAKAVRFV------YESFRHMQPGIPLLHIHGRQKQG----ARLDTTAKF-SSAKNS 349
Query 693 ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-ARGSKCFLLT---SNAGV 747
L AT VA G+D + VI + +V I GR R R + L G+
Sbjct 350 CLFATDVAARGLDFPAVDFVIQVDCPDDVDTYIHRVGRTARYNREGRGVLFLAPSEEEGM 409
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAV 775
+++ + + +N + Q+ E +
Sbjct 410 LKRLEAKKVPVEAINVRQKKRQSIKEQL 437
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/131 (18%), Positives = 48/131 (37%), Gaps = 3/131 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + A+KG + + A TG GKT + +L + L+ + + +
Sbjct 76 QRKAVPLALKGHDILGAAKTGSGKTLSFIIPVLENLYRLQHVGADAGLGALILSPTRELA 135
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q V K + G+ Q + +I++ TP ++ +L + +
Sbjct 136 IQIFDVLCKIGKHGHMFAAGLLIGGKSLESERQALPRMNILVATPGRMLQHLSQTAAFLV 195
Query 364 SIFTLMIFDEC 374
+++ DE
Sbjct 196 DDLKMLVLDEA 206
>sp|Q5BBY1|HAS1_EMENI ATP-dependent RNA helicase has1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=has1 PE=3 SV=1
Length=609
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 77/221 (35%), Gaps = 35/221 (16%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP- 609
L+I+ R+ D L F F N++ DE ++ L FE++++++ + + +
Sbjct 253 LLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKILPNEDRQTML 312
Query 610 -------KLEDLCFI-------------LQEEYHLNPETITILFVKTRALVDALKNWIEG 649
K+EDL I +E + + + L ++++
Sbjct 313 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICEADKRFLLLFSFLKR 372
Query 650 NPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCILDAFKA-SGDHNILIAT 697
N K + + + + QK F+ + +LI T
Sbjct 373 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGVLICT 432
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
VA G+DI + +I ++ + I GR R +
Sbjct 433 DVAARGLDIPAVDWIIQFDPPDDTRDYIHRVGRTARGANGR 473
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 52/133 (39%), Gaps = 8/133 (6%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q P + G++ + A TG GKT + + L+ P+ G +V + +
Sbjct 155 QQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLSALRFKPRNGTGVIV-VSPTRELA 213
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIP 361
Q V + H + G E++ + +++I TP L+++L+ G +
Sbjct 214 LQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNTPGFVF 273
Query 362 SLSIFTLMIFDEC 374
++ DE
Sbjct 274 K--NLKTLVIDEA 284
>sp|A6WSX5|RAPA_SHEB8 RNA polymerase-associated protein RapA OS=Shewanella
baltica (strain OS185) OX=402882 GN=rapA PE=3 SV=1
Length=968
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 143/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVIPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ ++ + Q + E + L + + A + R
Sbjct 376 GEK--DISPSIRLIQAEGIDAEVQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRF 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + R +G + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPDQYQTAARVSGMMGGHKSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|Q0JL73|RH26_ORYSJ DEAD-box ATP-dependent RNA helicase 26 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os01g0618500 PE=2
SV=1
Length=536
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/145 (19%), Positives = 53/145 (37%), Gaps = 15/145 (10%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
E Q + P + + L +L++ + + I+F T + + +
Sbjct 292 ETHSQVSQMYMVAPLDLH--FSILYNVLKKHIAEDADYKVIVFCTTAMVTKLVAEVLSQ- 348
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
LK I + +Q+ + + D F+ S IL+++ V+ G+D
Sbjct 349 -----LKLNIREIHSRKSQSA------RTKVSDEFRKSKGL-ILVSSDVSARGVDYPDVT 396
Query 711 LVILYEYVGNVIKMIQTRGRGRARG 735
LVI + + I GR +G
Sbjct 397 LVIQVGLPADREQYIHRLGRTGRKG 421
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/124 (19%), Positives = 50/124 (40%), Gaps = 4/124 (3%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++G++ + A TG GKT LL L P+ ++ + Q + K
Sbjct 109 LQGEDVLAKAKTGTGKTVAFLLPAIELLSTLPRSPSINLLVICPTRELANQVAAEARKLL 168
Query 315 ERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKK--GTIPSLSIFTLMI 370
+ H + + ++ +++N I++ TP L ++L+ G + +++
Sbjct 169 KYHRSLGVQVVIGGTKLPQEQRSMQSNPCQILVATPGRLKDHLENTPGFSNRIKGVKVLV 228
Query 371 FDEC 374
DE
Sbjct 229 LDEA 232
>sp|Q0D622|RH32_ORYSJ DEAD-box ATP-dependent RNA helicase 32 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os07g0517000 PE=2
SV=2
Length=773
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/124 (22%), Positives = 54/124 (44%), Gaps = 3/124 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFS 311
A+ G++ + A TG GKT ++ L + G + V + + + Q +VF
Sbjct 114 ALCGRDVLGAAKTGSGKTLAFVIPVLEKLYRERWGPEDGVGCIVLSPNKDLAGQIFNVFQ 173
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-KKGTIPSLSIFTLMI 370
K + HG+ I G + ++ N +I++ TP L+ ++ + I +++
Sbjct 174 KVGKLHGFSAACIVGNRKGLDEEKAVINNMNILVCTPGRLLQHMGETTNFDCSQIQQILV 233
Query 371 FDEC 374
DE
Sbjct 234 IDEA 237
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/252 (17%), Positives = 85/252 (34%), Gaps = 30/252 (12%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
LE +L + ++ ++F+ + V + + L+ +
Sbjct 310 LEQKLNMLWSFIKRHLKSRILVFLSSVKQVKFVYEVFKKLRPGISLRCM----------H 359
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
M Q+ I+ FK H++L +T + G+DI + V+ + N+ I GR
Sbjct 360 GRMKYEVQQAIVAEFKEG--HSVLFSTDIFARGLDIEDVDWVVQVDCPENIALYIHRVGR 417
Query 731 -GR-ARGSKCFLLTSNAGVIEKEQINMYKEK----MMNDSILRLQTWDEAVFREKILHIQ 784
R + K + E++ + K + + +LQ + + + +
Sbjct 418 TARYNKRGKALIFLCPEEEKMLEKLKAAESKIPIHIKKPNTEQLQQISQNIASVLVQYPN 477
Query 785 THEKFIRD---SQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKEC 841
+ R + DKE L + A Y A + + + K
Sbjct 478 LQQLGKRAFVTYLKSVYLQSDKEVFDLSRFSMENFAAYAASLGLP-------VTP--KIR 528
Query 842 FVSRPHPKPKQF 853
FVS PK++
Sbjct 529 FVSHKKNVPKKY 540
>sp|Q5BCI0|MAK5_EMENI ATP-dependent RNA helicase mak5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=mak5 PE=3 SV=1
Length=770
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/115 (22%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+P+ T++F + + V + ++ ++ M A+ ++
Sbjct 497 HPKHRTLVFTNSISAVRRITQLLQTLQL------------PALALHSSMAQKARLRSVER 544
Query 685 FKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
F +S + IL+AT VA G+DI + VI Y + GR RA S
Sbjct 545 FSSSTANPGTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGAS 599
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/162 (19%), Positives = 57/162 (35%), Gaps = 16/162 (10%)
Query 228 PPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ 287
P ++ + P + Q P + G + I A TG GKT L H + +
Sbjct 205 SPETLTSLSKLKFSTPTSVQKSCIPPILDGHDVIGKASTGSGKTLAFGLPILEHYLERER 264
Query 288 GQ-------KGKV---VFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPV 334
+ K K+ + + + Q R ++G +
Sbjct 265 RKTIDSEEEKEKIPIALILSPTRELAHQLQKHIYGLISNAPGVNARTALLTGGLSVQKQ- 323
Query 335 EQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDEC 374
++++E DI+I TP + L+ +G I + ++ DE
Sbjct 324 QRLLETADIVIGTPGRVWEVLRTGQGLIRRMQGIKFLVIDEA 365
>sp|B4F2H6|RAPA_PROMH RNA polymerase-associated protein RapA OS=Proteus
mirabilis (strain HI4320) OX=529507 GN=rapA PE=3 SV=1
Length=967
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 73/492 (15%), Positives = 156/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGKN--TIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A K N ++ G GKT + +I + G+ +V+ +
Sbjct 157 QLYIANEVGKRHNPRVLLADEVGLGKTIEAGMIIHQQIMD---GRAERVLIIVPE----S 209
Query 305 QQKSVFSKYFERHGYRVTGISGA--TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + + + + E +II + + N ++
Sbjct 210 LQHQWLVEMLRRFNLRFSLFDDSRYSESLLDSDNPFETEQMIICSLDFVRKNKQRFEHLV 269
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + +++ DE H+ S++ P Q + + +P V+ LTA+ +
Sbjct 270 EATWDMLVVDEAHHLVWSEKAPSRE------YQVIETLAEAIPSVLLLTATP---EQLGQ 320
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
+ + L + + + + + Q+ +R V ++ +
Sbjct 321 ESHFARLRLLDPN-----------RFHDYNEFINE-QQKYRPVADAVTILLSEDDLNNEQ 368
Query 481 DTESLAKRICKDLENLSQIQNRE-FGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L + N + K Q ++ + K
Sbjct 369 QNSISEMISEQDIEPLLKASNTQGEERTKSRQALIHMLMDRHGTGRLLFRNTRSGVKGFP 428
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K L +K A VRA E+ QE E
Sbjct 429 NRLLHAIKM--PLPTQYQTAIKVAEIMAAKKSLEVRAKEMLYPERIY--------QEFEG 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ N +P++E L L N ++ A L+ + ++
Sbjct 479 ENATWWNFDPRVEWLLGFL----TANRHEKVLVICAQAATALQLEQVLRER---EGIRAA 531
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM+L + F + + +L+ + + EG + N +++++
Sbjct 532 VF--------HEGMSLLERDRAAAYFASEEEGAQVLLCSEIGSEGRNFQFANQLVMFDLP 583
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 584 FNPDLLEQRIGR 595
>sp|A5DLR3|DBP10_PICGU ATP-dependent RNA helicase DBP10 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP10 PE=3
SV=2
Length=914
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 47/187 (25%), Positives = 69/187 (37%), Gaps = 30/187 (16%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
L E TI+FV T+ V+ + + G + + A+K L
Sbjct 384 RLPSEHSTIVFVPTKHHVEYVTTLLRD------------AGHLVSYIYGTLDQHARKQQL 431
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLT 742
F+A+ NIL+ T VA GIDI V+ Y G+ I GR T
Sbjct 432 YQFRAA-YTNILVVTDVAARGIDIPVLANVVNYTLPGSSKIFIHRVGR-----------T 479
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
+ AG ++N+ L E +K+L Q HEK ++ EK P+
Sbjct 480 ARAGNKGWAY------SIVNEKELPYLLDLELFLGKKVLLTQMHEKKVQICHEKGLSAPE 533
Query 803 KENKKLL 809
K L
Sbjct 534 VSYKDRL 540
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M+ ++ + A TG GKT +L LK + V + + Q ++
Sbjct 134 MESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFT 193
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R + G + ++ N DI++ TP ++ LK L ++FDE
Sbjct 194 KGTDLRSIVLIGGDSLEDQFSSMMTNPDILVATPGRFLH-LKVEMNLDLKTVEYIVFDEA 252
>sp|O00148|DX39A_HUMAN ATP-dependent RNA helicase DDX39A OS=Homo
sapiens OX=9606 GN=DDX39A PE=1 SV=2
Length=427
Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats.
Identities = 52/354 (15%), Positives = 113/354 (32%), Gaps = 40/354 (11%)
Query 406 IGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVES 465
+G TA + + + + L + + E + + +
Sbjct 92 MGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGL 151
Query 466 RISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM 525
I + + RI L+ ++NR F + + +++ + Q+
Sbjct 152 SIKKDEEVLKKNCPHVVVGTPGRI------LALVRNRSFSLKNVKHFVLDECDKMLE-QL 204
Query 526 PDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQD 585
+ + I + L + ++ KD + F + D+ +
Sbjct 205 DMRRDVQEIFR--------LTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKL 256
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
++ +L+ S +N KL DL +L I+FVK+ AL
Sbjct 257 TLHGLQQYYVKLKD-----SEKNRKLFDLLDVL-------EFNQVIIFVKSVQRCMALAQ 304
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ + GM + FK IL+AT++ G+D
Sbjct 305 LLVEQ------------NFPAIAIHRGMAQEERLSRYQQFK-DFQRRILVATNLFGRGMD 351
Query 706 IAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I + N+V Y+ + + R G+K +T + + + +N +++
Sbjct 352 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 405
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 11/138 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V +L ++ P + V+ +
Sbjct 66 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--PVNGQVTVLVMCHTRE 123
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLK 356
+ Q + FSKY +V+ G + E++++ N +++ TP ++ L
Sbjct 124 LAFQISKEYERFSKYMP--SVKVSVFFGGLSIKK-DEEVLKKNCPHVVVGTPGRIL-ALV 179
Query 357 KGTIPSLSIFTLMIFDEC 374
+ SL + DEC
Sbjct 180 RNRSFSLKNVKHFVLDEC 197
>sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp9 PE=3 SV=1
Length=649
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/228 (19%), Positives = 92/228 (40%), Gaps = 25/228 (11%)
Query 199 DLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------KPRNYQLELAL 252
+++ K++ +D+ E+ + ++N+ S D L KP Q +
Sbjct 30 NMKRKLDANDVPSTEVEEEKNTKDADNTDFESLNLDPRLRQALIKEQFTKPTPVQSKAIP 89
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KV---VFFANQIPVYEQQKS 308
A++GK+ + A TG GKT +L + + K + + EQ +S
Sbjct 90 LALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQS 149
Query 309 VFSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
V K+ G V ++ ++ V + + D+I+ TP ++ NL + SL
Sbjct 150 VIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSAL-SLENL 208
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
T ++ DE ++++ D+ + + +P+ ++A+
Sbjct 209 THLVIDEA---------DLVLSYGYDEDINALAKAIPRGVQTFLMSAT 247
Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 13/53 (25%), Gaps = 3/53 (6%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLTSNAGVIEK 750
GID V+ ++ I GR G + +
Sbjct 425 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADKFGKH 477
>sp|Q473K3|UVRB_CUPPJ UvrABC system protein B OS=Cupriavidus pinatubonensis
(strain JMP 134 / LMG 1197) OX=264198 GN=uvrB
PE=3 SV=1
Length=695
Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats.
Identities = 93/618 (15%), Positives = 188/618 (30%), Gaps = 133/618 (22%)
Query 233 SDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S LY PF P Q +E + + + TG GKT + + +
Sbjct 22 SPFQLYQPFPPAGDQPEAIRQLVEGIEDGLSFQTLLGV--TGSGKT----YTMANVIARM 75
Query 286 PQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG------------------ISGA 327
+ + FA + Q S F ++F R+ I
Sbjct 76 GRP----AIVFAPNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKD 131
Query 328 TAENVPVEQ--------IVENND-IIILT-------------PQILVNNLKKGTIPSLSI 365
++ N +EQ ++E D II+ T Q+++ L+ G +S
Sbjct 132 SSINEHIEQMRLSATKSLLERRDTIIVATVSAIYGIGNPNEYHQMILT-LRTG--DKISQ 188
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD 425
+ ++ + +V G T + + L+
Sbjct 189 --------------RDVIARLIAMQYTRNETDFQRGTFRVRGDTIDIFPAEHAEMAVRLE 234
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 485
SL T + +++ + P + + + I A+L E
Sbjct 235 MFDDEVESLQFFDPLTGRV-RQKIPRFTVYPSSHYVTPRETVLRAIEDIKAELRDRLEFF 293
Query 486 AK------------RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESR 533
K R DLE LS++ G + Y + + + + D
Sbjct 294 HKENRLVEVQRLEQRTRFDLEMLSELG-FCKGIENYSRHLSGAKPGEPPPTLVDYLPSDA 352
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDLTQRF- 590
+ + L + + + AR ++Y S + F+E E+ + Q
Sbjct 353 LMFLDESHV--LIGQLNGMYNGDRARKTTLVEYGFRLPSALDNRPLKFEEFERKMRQVMF 410
Query 591 ----------EEKLQELESVSRDPSNENP---------KLEDLCFILQEEYHLNPETITI 631
E Q +E V R +P +++DL + + +
Sbjct 411 VSATPAQFEKEHAGQVVEQVVRPTGLVDPIIIVRPATTQVDDLLSEI--NLRVEAGERVL 468
Query 632 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 691
+ T+ + + L ++ N G ++ + + I+ + G
Sbjct 469 VTTLTKRMAEQLTEFLSEN------------GVKVRYLHSDIDTVERVEIIRDLRL-GTF 515
Query 692 NILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNA 745
++L+ ++ EG+DI + +LV + + +IQT GR R L
Sbjct 516 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAARNVNGTAILYADRI 575
Query 746 GVIEKEQINMYKEKMMND 763
++ I+ + +
Sbjct 576 TDSMRKAIDETERRRAKQ 593
>sp|Q5T1V6|DDX59_HUMAN Probable ATP-dependent RNA helicase DDX59
OS=Homo sapiens OX=9606 GN=DDX59 PE=1 SV=1
Length=619
Score = 67.1 bits (162), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/196 (18%), Positives = 77/196 (39%), Gaps = 18/196 (9%)
Query 593 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK 652
++++ DP+ K + L IL ++ P ++FV + D L ++
Sbjct 416 NVRQIILWVEDPA----KKKKLFEILNDKKLFKPP--VLVFVDCKLGADLLSEAVQK--- 466
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
+TG + ++ + +K IL GD+ ++++T V G+D+ LV
Sbjct 467 --------ITGLKSISIHSEKSQIERKNILKGL-LEGDYEVVVSTGVLGRGLDLISVRLV 517
Query 713 ILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
+ ++ ++ + + GR G +T ++ ++ K SIL Q +
Sbjct 518 VNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLN 577
Query 773 EAVFREKILHIQTHEK 788
++ Q +K
Sbjct 578 SPYLHDQKRKEQQKDK 593
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 9/155 (6%)
Query 224 ENSCPPSEVSDTNLYSPFK-PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
E+ P ++ S ++ P Q+++ + G++ + A TG GKT + + +
Sbjct 206 EHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKT--AAFLLPVIM 263
Query 283 KKFPQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
+ + + + + Q Q R + + G + ++ +
Sbjct 264 RALFESKTPSALILTPTRELAIQIERQAKELMSGLPR--MKTVLLVGGLPLPPQLYRLQQ 321
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ +II TP L++ +K+ ++ L +++ DE
Sbjct 322 HVKVIIATPGRLLDIIKQSSV-ELCGVKIVVVDEA 355
>sp|A5E2I8|SPB4_LODEL ATP-dependent rRNA helicase SPB4 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=SPB4 PE=3 SV=1
Length=637
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/216 (16%), Positives = 70/216 (32%), Gaps = 19/216 (9%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
KL + +L++ + L + + + + +
Sbjct 266 KLTTMLQMLRDNQFKKAIVYFPTCTSVKHFYQMLSKLCKSSANDIDISALLFF-----SL 320
Query 670 NTGMTLPAQKCILDAF---KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ +T ++ L+ F IL+AT VA GIDI +LVI + + +
Sbjct 321 HGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDIPDVDLVIQIDPPTDPSVFLH 380
Query 727 TRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQT 785
GR GRA ++ N E++ + M + + D ++
Sbjct 381 RCGRTGRANKVGRAIVMLNNDTQEEDYVGF-----MEVKSVFMTKIDPPEDKDNHSFHNK 435
Query 786 HEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTA 821
+K +R + D+ +L + Y +
Sbjct 436 FQKKLRK-----YMLEDRARHELAVKSYVGFVRYYS 466
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/141 (21%), Positives = 49/141 (35%), Gaps = 24/141 (17%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHH----LKKFPQGQKG---------KVVFFANQIPVY 303
K+ I+ A TG GKT + L + P+G++ + A +
Sbjct 47 NKDVIVEAVTGSGKTLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELA 106
Query 304 EQQKSVFSKYFE--------RHGYRVTGISGATAENVPVEQIVENND--IIILTPQILVN 353
+Q + VF K E + + G + N I+I TP L++
Sbjct 107 KQIQMVFDKVLELLPEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLD 166
Query 354 NLKKGTIPSLSIFTLMIFDEC 374
+ I S ++I DE
Sbjct 167 FMSL-QIVKTSSLEIVILDEA 186
>sp|A9L3Y2|RAPA_SHEB9 RNA polymerase-associated protein RapA OS=Shewanella
baltica (strain OS195) OX=399599 GN=rapA PE=3 SV=1
Length=968
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 142/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVIPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ ++ Q + E + L + + A + R
Sbjct 376 GEK--DISPSIRLIQADGIDAEVQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRF 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + R +G + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPDQYQTAARVSGMMGGHKSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|B8ECC6|RAPA_SHEB2 RNA polymerase-associated protein RapA OS=Shewanella
baltica (strain OS223) OX=407976 GN=rapA PE=3 SV=1
Length=968
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/475 (14%), Positives = 142/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVIPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A AK + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEEDSYKDVAIAAEALAGNAKLPDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ ++ Q + E + L + + A + R
Sbjct 376 GEK--DISPSIRLIQADGIDAEVQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRF 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + R +G + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPDQYQTAARVSGMMGGHKSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|Q9NY93|DDX56_HUMAN Probable ATP-dependent RNA helicase DDX56
OS=Homo sapiens OX=9606 GN=DDX56 PE=1 SV=1
Length=547
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 83/216 (38%), Gaps = 25/216 (12%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-----QKGKVVFFANQIPVYEQQKS 308
A++GK+ + A TG GKT + L Q + + + Q +S
Sbjct 41 ALEGKDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVEQAVRGLVLVPTKELARQAQS 100
Query 309 VFSKYFERHG--YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ + RV +S A ++E D+++ TP ++++L++ ++
Sbjct 101 MIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTPSRILSHLQQDSLKLRDSL 160
Query 367 TLMIFDECHNTSKQHPYNMIMFNY-LDQKLGGSSGPLPQV---IGLTASVGVGDAKNTDE 422
L++ DE ++F++ +++L LP++ ++A+ ++
Sbjct 161 ELLVVDEA----------DLLFSFGFEEELKSLLCHLPRIYQAFLMSATFN----EDVQA 206
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 458
+ I +L + + QVV + ++
Sbjct 207 LKELILHNPVTLKLQESQLPGPDQLQQFQVVCETEE 242
Score = 50.2 bits (118), Expect = 7e-05, Method: Composition-based stats.
Identities = 74/455 (16%), Positives = 148/455 (33%), Gaps = 93/455 (20%)
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
+L R +S+ +++ ++ N Q V ++K +V P SRI
Sbjct 92 KELARQAQSMIQQLATYCARDVRVANVSAAEDSVSQRAVLMEKPDVVVGTP-----SRIL 146
Query 536 KALFLYTSHLRKYNDALIISE---------HARMKDALDYL----KDFFSNVRAAGFDEI 582
L + LR + L++ E +K L +L + F + +
Sbjct 147 SHLQQDSLKLRDSLELLVVDEADLLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQA 206
Query 583 EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE--------TITILFV 634
++L L+ ES P + + +C ++++ L ++LFV
Sbjct 207 LKELILHNPVTLKLQESQLPGPDQLQ-QFQVVCETEEDKFLLLYALLKLSLIRGKSLLFV 265
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
T L+ ++E F P + N + L ++ I+ F G ++ +
Sbjct 266 NTLERSYRLRLFLEQ-----FSIPTCVL-------NGELPLRSRCHIISQF-NQGFYDCV 312
Query 695 IATSV---------------------------ADEGIDIAQCNLVILYEYVGNVIKMIQT 727
IAT GID + V+ ++ I
Sbjct 313 IATDAEVLGAPVKGKRRGRGPKGDKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHR 372
Query 728 RGR-GRARGSKCFLLTS------NAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
GR RA L + G IE+ + ++ R++ + +R +
Sbjct 373 AGRTARANNPGIVLTFVLPTEQFHLGKIEELLSGENRGPILLPYQFRMEEIEGFRYRCRD 432
Query 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCK----------ALACYTADVRVIEECH 830
++ IR+++ + + + + L K K L + +
Sbjct 433 AMRSVTKQAIREAR-----LKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKP 487
Query 831 YTVLGDAFKE----CFVSRPHPKPKQFSSFEKRAK 861
+ + + RPH K K+ SS ++AK
Sbjct 488 HLGHVPDYLVPPALRGLVRPHKKRKKLSSSCRKAK 522
>sp|P53734|DBP6_YEAST ATP-dependent RNA helicase DBP6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DBP6
PE=1 SV=1
Length=629
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/205 (20%), Positives = 72/205 (35%), Gaps = 17/205 (8%)
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-------HL 624
+ + G + + L + +KL +L + + + P + + L Y H
Sbjct 386 NTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILLYSICQFMAHS 445
Query 625 NPETITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
++FVK+ L ++ + S LK + N+ + K
Sbjct 446 PIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKK 505
Query 681 ILDAFKASGD---HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR-- 734
I+ F + ILI T + GIDI VI Y+ + + + GR RA
Sbjct 506 IVANFSHHSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANEL 565
Query 735 GSKCFLLTSNAGVIEKEQINMYKEK 759
GS LL + +N ++
Sbjct 566 GSAYNLLVGRGERTFFDDLNKDLDR 590
Score = 56.7 bits (135), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/117 (21%), Positives = 45/117 (38%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L Q + + + + Q + +K +
Sbjct 229 DILVNAATGSGKTLAYSIPIVQTL-FKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTS 287
Query 319 YRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V+ + +++ DI+I TP LV++L +I L +I DE
Sbjct 288 LIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSIN-LKNLKFLIIDEA 343
>sp|P38112|MAK5_YEAST ATP-dependent RNA helicase MAK5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MAK5
PE=1 SV=1
Length=773
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 54/336 (16%), Positives = 104/336 (31%), Gaps = 35/336 (10%)
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
+ D++ K+C + A ++ L + + + + L +
Sbjct 257 HQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEK 316
Query 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQW--IVTVQKACMVFQMPDKDEESRICKAL 538
D +L KR K + +R ++++ I+ + + S+I + L
Sbjct 317 DN-TLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTL 375
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI--EQDLTQRFEEKLQE 596
+ D L S + + + +D + V +I +
Sbjct 376 IFSATFSIDLFDKLSSSRQVKDRRFKNN-EDELNAVIQHLMSKIHFNSKPVIIDTNPESK 434
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
+ S ++ E P LE + + T++F V L ++
Sbjct 435 VSSQIKESLIECPPLERDLYCY--YFLTMFPGTTLIFCNAIDSVKKLTVYLNN------- 485
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFK----ASGDHN-----------ILIATSVAD 701
G ++ MT + L+ FK N +LIA+ VA
Sbjct 486 -----LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAA 540
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
G+DI VI Y + I GR GS+
Sbjct 541 RGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSE 576
Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/230 (17%), Positives = 79/230 (34%), Gaps = 19/230 (8%)
Query 264 APTGCGKTFVSLLICEHHLKKFPQGQKGKVV--FFANQIPVYEQQKSVFSKYFERH--GY 319
A TG GKT + L + K + F + Q K E
Sbjct 215 ASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKS 274
Query 320 RVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK--KGTIPSLSIFTLMIFDE 373
+ + +S ++ +Q + D I+I TP + L+ I S +I DE
Sbjct 275 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVNTLILDE 334
Query 374 CHNTSKQ---HPYNMIMFNYL-----DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD 425
+ + I+ + L +++ S + Q + +A+ + +
Sbjct 335 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQ 394
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ + + + A ++H + ++ KP ES++S + K +
Sbjct 395 VKDRRFKNNEDELNAVIQHLMSKIH-FNSKPVIIDTNPESKVSSQIKESL 443
>sp|Q1MTR1|IRC3_SCHPO Putative mitochondrial ATP-dependent helicase
irc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
OX=284812 GN=irc3 PE=3 SV=2
Length=606
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 31/196 (16%)
Query 241 FKPRNYQLELALPAMKG-----KNTIICAPTGCGKTFVSLLICEHHLKKFP--QGQKGKV 293
K R YQ E + + + TG GKT + H +K P + +
Sbjct 25 LKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTA----LFPHFIKYAPTLRPNSEQC 80
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ ++ + Q + + G + + + +
Sbjct 81 LILVHRKELALQALKHCRESLPNKSIEI--DMGNQCASGLAD---------VTVASVF-- 127
Query 354 NLKKGTIPSLS--IFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS 411
+LK + + F L+IFDE H+ Y I+ ++ S VIGLTA+
Sbjct 128 SLKNERLLKYNPLNFKLLIFDEVHH-MASPSYLRILEHF----GAESEKSKVNVIGLTAT 182
Query 412 VGVGDAKNTDEALDYI 427
+ D K LD I
Sbjct 183 LFRADGKGLACGLDEI 198
Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 16/181 (9%)
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK 610
A + E + +D +KD + + DL + E + ++ +E
Sbjct 192 ACGLDEIVYHRHFVDMIKDNWLVEPKVINIKWSTDLVLADSSSFLDQEKLKKEAQSEKAI 251
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
E L+ H + + T++F I L G
Sbjct 252 FEIPRAWLE---HASNRSSTLVFC------------INVEHSLKVCNAFRKLGIDARALF 296
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
++ ++ F+ +L+ V EG DI + +++ + + Q GR
Sbjct 297 GETNDSERETLIQDFRKK-KFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGR 355
Query 731 G 731
G
Sbjct 356 G 356
>sp|Q0DBS1|RH51_ORYSJ Putative DEAD-box ATP-dependent RNA helicase
51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535100
PE=3 SV=2
Length=590
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/340 (15%), Positives = 105/340 (31%), Gaps = 55/340 (16%)
Query 445 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK---RICKDLENLSQIQN 501
+L E++ P V + +A L+ E L + +
Sbjct 108 HLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIVLCPT 167
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
RE Q + ++ + R ++ +++ R+
Sbjct 168 RELAIQTHNVAKELMRYHSQTLGYVIGGIDLRGEAEQLAKGINV-------LVATPGRLL 220
Query 562 DALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN-----PKLEDLC 615
D + K F + ++ DE ++ L Q FEE+++++ + + + E +
Sbjct 221 DHMQKTKSFKYECLKCLIIDEADRILEQNFEEQMKQIFKLLPRQGRQTVLFSATQTEKVE 280
Query 616 FILQEEYHLNPE-TITILFV-----KTRALVDALKNWIEGNPKLSFL------------- 656
+ + E T+++V +++A V+ LK P
Sbjct 281 DFAKLTFGSKEERQRTLVYVGVDDHESKATVEGLKQGYCVIPSERRFLVLYAFLKKALSE 340
Query 657 KPGILTGRGKTNQ------------------NTGMTLPAQKCILDAFKASGDHNILIATS 698
K ++ N + + + F +H IL+ T+
Sbjct 341 KTKVMVFFSSCNSVKFHAQLLNFIQIECYDIHGQLKQHQRTSTFFKFH-KAEHGILLCTN 399
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
VA G+DI + ++ Y+ I GR R K
Sbjct 400 VAARGLDIPDVDYIVQYDPPDETKDYIHRVGRTARGDNGK 439
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (40%), Gaps = 4/123 (3%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
M G + + A TG GKT + + L+ P+ G +V + Q +V
Sbjct 121 MLGSDVMASAKTGSGKTLAFLIPAIELLCRLRFSPRNGTGVIV-LCPTRELAIQTHNVAK 179
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ H + + G EQ+ + ++++ TP L+++++K +I
Sbjct 180 ELMRYHSQTLGYVIGGIDLRGEAEQLAKGINVLVATPGRLLDHMQKTKSFKYECLKCLII 239
Query 372 DEC 374
DE
Sbjct 240 DEA 242
>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B
OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2
SV=1
Length=573
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/189 (19%), Positives = 67/189 (35%), Gaps = 7/189 (4%)
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN-ENPKLEDL 614
AR L S V L+Q SV++ N P LE
Sbjct 350 RAARSWGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSNSVNQAAVNSLPPSLEHY 409
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT-GRGKTNQNTGM 673
I + ++ ++ I ++ + ++ L + + G T + +
Sbjct 410 YCISKAQHKVDTLRRCIHALE----AQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDL 465
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
A+ +L FK G+ +L+ ++ G+D+ +C+LVI + + GR
Sbjct 466 GKLARSTVLKKFK-DGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGR 524
Query 734 RGSKCFLLT 742
G K ++T
Sbjct 525 LGRKGTVVT 533
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 72/245 (29%), Gaps = 26/245 (11%)
Query 266 TGCGKTFVSLLICEHHL--KKFPQGQKG-------KVVFFANQIPVYEQQKSVFSKYFER 316
TG GKT LL + K P Q G + V A + Q K
Sbjct 177 TGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAPSRELGMQIVREVEKILGP 236
Query 317 HGYRVTGISGATAENVPVEQIVENND--IIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R+ A E+ ++ N I++ TP + + + G ++ DE
Sbjct 237 NDKRLVQQLVGGANRSRQEEALKKNKPLIVVGTPGRI-SEISAGGKLHTHGCRFLVLDEV 295
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIG------------LTASVGVGDAKNTDE 422
+ Y M L+ S ++G ++A++ +
Sbjct 296 -DQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLARRSERQTILVSATIPFSVIRAARS 354
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ L ++ + ++ L Q P V + + +
Sbjct 355 -WGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSNSVNQAAVNSLPPSLEHYYCIS 413
Query 483 ESLAK 487
++ K
Sbjct 414 KAQHK 418
>sp|Q5ANB2|DBP10_CANAL ATP-dependent RNA helicase DBP10 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=DBP10
PE=3 SV=1
Length=908
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/108 (28%), Positives = 41/108 (38%), Gaps = 14/108 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
TI+FV T+ V+ + + L G L + NQ L F+
Sbjct 396 STIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQ------------LYQFRV- 442
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
G N+L+ T VA GIDI VI + + I GR RA
Sbjct 443 GLTNVLVVTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGN 490
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M+G++ + A TG GKT +L LK G + V + + Q ++
Sbjct 134 MEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPG-GVRAVILSPSRELALQTYKQVKEFS 192
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + +++ DII+ TP ++ LK L ++FDE
Sbjct 193 HGTNLQSIVLIGGDSLEEDFSKMMTKPDIIVCTPGRFLH-LKVEMQYDLMTVQYIVFDEA 251
>sp|Q4WM60|DBP4_ASPFU ATP-dependent RNA helicase dbp4 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp4 PE=3 SV=1
Length=787
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 5/151 (3%)
Query 226 SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S P + ++ Y + Q A+KG++ + A TG GKT L+ +L +
Sbjct 55 SEPTASGLASSHYKTLT--DIQSRAISHALKGRDILGAAKTGSGKTLAFLVPVLENLYRK 112
Query 286 PQG--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
+ + + Q V K H + + G ++ + +I
Sbjct 113 QWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGG-KSLKEEQERLGRMNI 171
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ TP ++ +L + + +++ DE
Sbjct 172 LVCTPGRMLQHLDQTALFDTYNLQMLVLDEA 202
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/179 (21%), Positives = 59/179 (33%), Gaps = 23/179 (13%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
IL N ++ T++F+ + V + L+PGI Q G
Sbjct 279 LDILWSFIRSNLKSKTMVFLSSGKQVRFV------YESFRHLQPGIPLMHLHGRQKQG-- 330
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR- 732
+ I+ F S +L +T VA G+D + VI + + I GR R
Sbjct 331 --GRLDIVTRFSQSKHC-VLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY 387
Query 733 ARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSIL------RLQTWDEAVFREKIL 781
R + L + EQ + EK+ + +LQ K L
Sbjct 388 EREGRAVLFLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYL 446
>sp|A8GV86|UVRB_RICB8 UvrABC system protein B OS=Rickettsia bellii
(strain OSU 85-389) OX=391896 GN=uvrB PE=3 SV=1
Length=661
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 64/380 (17%), Positives = 133/380 (35%), Gaps = 49/380 (13%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQL-----MRDTESLAKRICKDLENLSQIQNREFG 505
P++ K S I ++ + IA L + +T+ + +R DLE L++ G
Sbjct 246 SHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETG-SCKG 304
Query 506 TQKYEQWIVTVQKAC---MVFQMPDKDEESRICKALFLYTSHLRKYNDA-----LIISEH 557
+ Y ++ + +F+ KD + ++ YN +++
Sbjct 305 VENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEHG 364
Query 558 ARMKDALD----YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK--- 610
R+ ALD +++ + F L + E + +E + R +P+
Sbjct 365 FRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECII 424
Query 611 ------LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+EDL +Q + ++ T+ + + L N+++ K L
Sbjct 425 KPATNQVEDLVGEIQS--TIAKGFCVLVTTLTKKMAEDLTNYLQELK----YKTSYL--- 475
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG----- 719
++ + + IL + G +IL+ ++ EG+DI +C LV + +
Sbjct 476 -----HSNVHTLERIEILRDLR-QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR 529
Query 720 NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 777
+ + +IQT GR R + L I+K + + +
Sbjct 530 SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTIN 589
Query 778 EKILHIQTHEKFIRDSQEKP 797
I + EK +K
Sbjct 590 RTIHALAELEKVDSKLDKKQ 609
>sp|Q9UHI6|DDX20_HUMAN Probable ATP-dependent RNA helicase DDX20
OS=Homo sapiens OX=9606 GN=DDX20 PE=1 SV=2
Length=824
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/146 (18%), Positives = 47/146 (32%), Gaps = 14/146 (10%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
E+ LQE + P ++F + L + + G +
Sbjct 293 FEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSK------------GFPAECIS 340
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
M + + K +LI+T + GID + NLV+ + + + GR
Sbjct 341 GNMNQNQRLDAMAKLK-HFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGR 399
Query 731 GRARGSKCFLLTSNAGVIEKEQINMY 756
R L + E+E + M
Sbjct 400 AG-RFGTLGLTVTYCCRGEEENMMMR 424
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 48/134 (36%), Gaps = 5/134 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P QL+ G + I+ A +G GKT V I L + +++ A
Sbjct 84 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL--VLENLSTQILILAPTRE 141
Query 302 VYEQQKSVFSKY-FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q SV + + G G T + ++ I + +P + ++ +
Sbjct 142 IAVQIHSVITAIGIKMEGLECHVFIGGT-PLSQDKTRLKKCHIAVGSPGRIKQLIELDYL 200
Query 361 PSLSIFTLMIFDEC 374
S L I DE
Sbjct 201 NPGS-IRLFILDEA 213
>sp|A9IR19|UVRB_BORPD UvrABC system protein B OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) OX=340100
GN=uvrB PE=3 SV=1
Length=675
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 72/561 (13%), Positives = 177/561 (32%), Gaps = 91/561 (16%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG-- 323
TG GKT + + + + + A + Q + ++F ++
Sbjct 50 TGSGKT----YTMANIIARLGRP----ALVLAPNKTLAAQLYAEMREFFPKNAVEYFVSY 101
Query 324 ----------------ISGATAENVPVEQ--------IVENND-IIILTPQILVNNLKKG 358
I ++ N +EQ ++E D +I+ T + G
Sbjct 102 YDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPG 161
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLT------ASV 412
++ ++I S++ ++ + + +V G T S
Sbjct 162 DYHAM----VLILRAGDRISRREVLARLVAMQYTRNDADFARGTFRVRGETLDIFPAESP 217
Query 413 GVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 472
+ + +L L V V P+ + I ++ +
Sbjct 218 ELALRLTLFDDEIESLELFDPLTGRVRQKVPRFTVYPGSHYVTPRDTVLRAIETIKEELR 277
Query 473 YIIAQL-----MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD 527
+ L + + + L +R DLE L ++ G + Y + + + D
Sbjct 278 DRLKLLTAEGKLVEAQRLEQRTRFDLEMLQELG-FCKGIENYSRHLSGAAPGEPPPTLID 336
Query 528 KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY--------------LKDFFSN 573
+ + + + + AR + + Y L++F +
Sbjct 337 YLPADALMFIDESHVT--MGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEAR 394
Query 574 VR-----AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE-YHLNPE 627
+R +A EQ+ + E++ + P + +L E + +
Sbjct 395 MRQCVFVSATPAAYEQEHSDNVVEQVVRPTGLVDPQVEVRPARTQVDDLLGEIKLRVAAQ 454
Query 628 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 687
++ T+ + + L +++ + ++ L ++ + + I+ +
Sbjct 455 ERVLVTTLTKRMAEDLTDFLAEH----GVRVRYL--------HSDIDTVERVEIIRDLRL 502
Query 688 SGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGRGRARGSKCFLLT 742
G ++L+ ++ EG+DI + +LV + + + +IQT GR + +L
Sbjct 503 -GTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGHAILY 561
Query 743 SNAGVIEKEQINMYKEKMMND 763
++A + E+
Sbjct 562 ADAITASMRRAMDETERRRTK 582
>sp|Q1RHI9|UVRB_RICBR UvrABC system protein B OS=Rickettsia bellii
(strain RML369-C) OX=336407 GN=uvrB PE=3 SV=1
Length=661
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 64/380 (17%), Positives = 133/380 (35%), Gaps = 49/380 (13%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQL-----MRDTESLAKRICKDLENLSQIQNREFG 505
P++ K S I ++ + IA L + +T+ + +R DLE L++ G
Sbjct 246 SHFVMPKETVNKAISEIEEELQKRIAFLKSQDKLLETQRINQRTQYDLEMLTETG-SCKG 304
Query 506 TQKYEQWIVTVQKAC---MVFQMPDKDEESRICKALFLYTSHLRKYNDA-----LIISEH 557
+ Y ++ + +F+ KD + ++ YN +++
Sbjct 305 VENYSRFFTGRKAGEPPPTLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKEVLVEHG 364
Query 558 ARMKDALD----YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK--- 610
R+ ALD +++ + F L + E + +E + R +P+
Sbjct 365 FRLPSALDNRPLKFEEWDNFRPQTVFVSATPSLFELNETGGEVVELIIRPTGLLDPECII 424
Query 611 ------LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+EDL +Q + ++ T+ + + L N+++ K L
Sbjct 425 KPATNQVEDLVGEIQS--TIAKGFCVLVTTLTKKMAEDLTNYLQELK----YKTSYL--- 475
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG----- 719
++ + + IL + G +IL+ ++ EG+DI +C LV + +
Sbjct 476 -----HSNIHTLERIEILRDLR-QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLR 529
Query 720 NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFR 777
+ + +IQT GR R + L I+K + + +
Sbjct 530 SEVSLIQTIGRAARNSEGRVILYADKMTKSIDKAISETMRRRTIQQEHNEKYGIIPKTIN 589
Query 778 EKILHIQTHEKFIRDSQEKP 797
I + EK +K
Sbjct 590 RTIHALAELEKVDSKLDKKQ 609
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915
GN=mfd PE=3 SV=1
Length=697
Score = 67.1 bits (162), Expect = 5e-10, Method: Composition-based stats.
Identities = 61/348 (18%), Positives = 117/348 (34%), Gaps = 57/348 (16%)
Query 210 QIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCG 269
+IF + P ++S S +SD +P R ++C G G
Sbjct 144 KIFCERFPFTLTPDQDSAINSVLSDMYKSTPMD-R----------------LVCGDVGFG 186
Query 270 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA 329
KT V++ + +V + +Q + F+ F+ ++ +S +
Sbjct 187 KTEVAM-----RATFLAVCNQKQVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRFQS 241
Query 330 ENVPVEQI----VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 385
E E I + N ++I T +IL+ NLK L+I DE H
Sbjct 242 ETKCNEIINNVNIGNVHVLIGTHKILLKNLK------WKNLGLLIVDEEHR--------- 286
Query 386 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN 445
F ++ V+ LTA+ + + A I D S+IAT
Sbjct 287 --FGVHHKEQIKLISNNIDVLTLTATPI---PRTLNMAFVGIR------DLSIIATPPKQ 335
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
++ V + + ++ + + + + + + +R +L+ L N G
Sbjct 336 RLIVKTFVREFSYTVIR-KAILREILRGGQVYYIYNNVNKIERKKIELKKLVPEANIRIG 394
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALI 553
+ Q T ++ M K +C + + N +I
Sbjct 395 ---HGQLRSTDLESIMN-DFYHKRFNVLVCSTIIETGIDIPNVNTIII 438
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 53/145 (37%), Gaps = 16/145 (11%)
Query 607 ENPKLEDLCFILQEEYHLNPETITILFVKTR-----ALVDALKNWIEGNPKLSFLKP--G 659
PK + E+ IL R + + + +L L P
Sbjct 331 TPPKQRLIVKTFVREFSYTVIRKAILREILRGGQVYYIYNNVNKIERKKIELKKLVPEAN 390
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG 719
I G G+ + + I++ F N+L+ +++ + GIDI N +I+
Sbjct 391 IRIGHGQ------LRSTDLESIMNDF-YHKRFNVLVCSTIIETGIDIPNVNTIIIENANN 443
Query 720 -NVIKMIQTRGR-GRARGSKCFLLT 742
+ ++ Q RGR GR++ L
Sbjct 444 FGLAQLHQLRGRVGRSQHQAYAWLL 468
>sp|Q7SFC8|ROK1_NEUCR ATP-dependent RNA helicase rok1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=drh-16 PE=3 SV=1
Length=781
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 77/242 (32%), Gaps = 18/242 (7%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 573
+ + +A ++ + + I +A + ++ + + A + +D
Sbjct 431 LILDEADVLLDPIFRKQTMGIWRACTHPNLGMTCWSATMASNIEALLTKHIDKR---AKR 487
Query 574 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT--- 630
+ + + + + + + E KL L +L +
Sbjct 488 TPEQTPKPLIRLVVGLKDTAVPNITHKLIYTATEPGKLLALRQLLHPVSSADSGPPLRPP 547
Query 631 -ILFVKTRALVDALKNWIE-GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F +T AL + ++ P + + + + I+ F+ S
Sbjct 548 FLVFTQTIERAQALHDELKYDIPLEAGGSARVAVLHSSLPDSV------RSKIMARFR-S 600
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNA 745
G+ +LI T V G+D A N V+ Y+ + + GR G +
Sbjct 601 GEVWVLITTDVLARGVDFAGVNGVVNYDVPVSAAAYVHRAGRTGRAGREGGVAVTFYTKD 660
Query 746 GV 747
+
Sbjct 661 DI 662
Score = 36.7 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query 240 PFKPRNYQLELALPAM---------KGKNTIICAPTGCGKT------FVSLLICEHHLKK 284
P + R E+AL KG + + APTG GKT + +I
Sbjct 216 PLQLRP---EMALEKATDVEDVKVEKGIDFLGVAPTGSGKTISFLIPAIDAIIKRRAEDY 272
Query 285 FPQGQKG--KVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
P+ + + + A + Q + K G RV
Sbjct 273 TPETDEHVLQAIVVAPTRELASQIVNEGRKLAIGTGVRV 311
>sp|A2QS00|DBP4_ASPNC ATP-dependent RNA helicase dbp4 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp4 PE=3 SV=1
Length=802
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 5/151 (3%)
Query 226 SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S P + ++ Y + Q A+KG++ + A TG GKT L+ +L +
Sbjct 55 SEPTASGLASSHYKTLT--DIQSRAISHALKGRDILGAAKTGSGKTLAFLIPILENLYRK 112
Query 286 PQG--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
+ + + Q V K H + + G ++ + +I
Sbjct 113 QWSEHDGLGALVLSPTRELAIQIFEVLRKVGRYHTFSAGLVIGG-KSLREEQERLGRMNI 171
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ TP ++ +L + + +++ DE
Sbjct 172 LVCTPGRMLQHLDQTSFFETHNLQMLVLDEA 202
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 63/168 (38%), Gaps = 15/168 (9%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
+L N ++ TI+F+ + V + ++PG+ Q G
Sbjct 279 LDVLWSFIRSNLKSKTIVFLSSGKQVRFV------YESFRHMQPGVPLMHLHGRQKQG-- 330
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR- 732
+ I F +S H +L AT VA G+D + VI + + I GR R
Sbjct 331 --GRLDITTKF-SSAQHAVLFATDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY 387
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
R + L + EK + ++K + + ++ + ++++
Sbjct 388 ERDGRAVLFLDPSE--EKGMLKRLEQKKVQVERINVKANKQQSIKDQL 433
>sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp9 PE=3 SV=1
Length=621
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 40/227 (18%), Positives = 90/227 (40%), Gaps = 25/227 (11%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------KPRNYQLELALP 253
++ K++ +D+ + + ++N+ + D L KP Q +
Sbjct 1 MKRKLDANDVPSAEVAEGKEAKDADNTDFENLNLDPRLRQALIKEQFTKPTPVQSKAIPL 60
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KV---VFFANQIPVYEQQKSV 309
A++GK+ + A TG GKT +L + + K + + EQ +SV
Sbjct 61 ALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSV 120
Query 310 FSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+K+ G V ++ ++ V + + D+I+ TP ++ NL + L T
Sbjct 121 ITKFTAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGSSALA-LDNLT 179
Query 368 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
++ DE ++++ D+ + + +P+ ++A+
Sbjct 180 HLVIDEA---------DLVLSYGYDEDINALAKAIPRGVQTFLMSAT 217
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 13/82 (16%), Positives = 23/82 (28%), Gaps = 7/82 (9%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLTSNAGVIEKEQINM-- 755
GID V+ ++ I GR G + + + +
Sbjct 397 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVVPADEFGKHKPTSFPT 456
Query 756 --YKEKMMNDSILRLQTWDEAV 775
Y E ++ + R D V
Sbjct 457 AKYDESVLAKIVKRQAKLDHEV 478
>sp|A7ESL8|DBP4_SCLS1 ATP-dependent RNA helicase dbp4 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079
GN=dbp4 PE=3 SV=1
Length=808
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/151 (19%), Positives = 58/151 (38%), Gaps = 5/151 (3%)
Query 226 SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S P S + + + + Q + A+KGK+ + A TG GKT L+ +L +
Sbjct 57 SGPTSSGLEASHFKTLT--DVQSKAVPLALKGKDILGAAKTGSGKTLAFLVPVLENLYRQ 114
Query 286 PQG--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
+ + + Q V K H + I G + E+ + +I
Sbjct 115 KWTELDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLIIGGRSLQEERER-LGRMNI 173
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ TP ++ ++ + + +++ DE
Sbjct 174 LVCTPGRMLQHMDQTAAFDVDNLQMLVLDEA 204
Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 72/220 (33%), Gaps = 20/220 (9%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
KL L ++ I+F+ + V + L L+PGI
Sbjct 279 EKLNTLFGFIRANLK----AKIIVFMSSGKQVRFV------YESLRHLQPGIPLLHLHGR 328
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q A+ I F +S ++ + AT V G+D + VI + + I
Sbjct 329 Q----KQTARLDITSKFSSS-KNSCIFATDVVARGLDFPAVDWVIQLDCPEDADTYIHRV 383
Query 729 GR-GR-ARGSKCFLLT---SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHI 783
GR R + + L G++++ + + +N + Q +
Sbjct 384 GRTARYGKVGRAVLFLDPSEEEGMLKRLEHKKVPIQKINIRPNKTQDIKNQLQNMCFQDP 443
Query 784 QTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADV 823
+ + K V +++K++ L Y + +
Sbjct 444 ELKYLGQKAFVSYAKSVFLQKDKEIFNINDIDLEGYASSI 483
>sp|Q4IBS2|MAK5_GIBZE ATP-dependent RNA helicase MAK5 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=MAK5 PE=3 SV=2
Length=781
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (2%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
++ M A+ L+ F AS ++ILIAT VA G+DI + + V+ Y + I G
Sbjct 537 HSQMAQKARHRSLERFTAS-RNSILIATDVAARGLDIKEVDQVLHYHVPRSADTYIHRSG 595
Query 730 R-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREK 779
R R S ++ + + K + + ++ + + + + ++
Sbjct 596 RTARGESSGISVILCAPEEVLPTRRLASKVHAVRSAGVKREHFIQTLLIDR 646
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/171 (18%), Positives = 53/171 (31%), Gaps = 9/171 (5%)
Query 212 FYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKT 271
QED + + P +S KP Q + G + I A TG GKT
Sbjct 207 KDQEDVDMAAWVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKT 266
Query 272 FVSLLICEHHLKKFPQGQKGKV----VFFANQIPVYEQQKSVFSKYFE--RHGYRVTGIS 325
+ + + + + + + +Q + V ++
Sbjct 267 LAFGIPMVERWLEMQEQGVKRTGPMSLVLSPTRELAKQLGDHLKALCDGLPSAPYVCVVT 326
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDEC 374
G + Q +E DI+I TP L L + + ++ DE
Sbjct 327 GGLSILKQQRQ-LEKADIVIGTPGRLWEVLSGDRALQSKFAKIRFLVVDEA 376
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like
OS=Mus musculus OX=10090 GN=Ercc6l PE=1 SV=1
Length=1240
Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats.
Identities = 83/545 (15%), Positives = 184/545 (34%), Gaps = 75/545 (14%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
I+ G GKT + I F V+ + + F+K+ G R
Sbjct 120 ILADDMGLGKT---VQIIAFLSGMFDASLVNHVLLIMPT-NLINTWVNEFAKWTP--GMR 173
Query 321 VTGISGATAENVPVE--QIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHN 376
V G++ +I + N ++I T Q+L+NN ++ ++ +I DE H
Sbjct 174 VKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAH- 232
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
I + + P + LT + + + D+ C+
Sbjct 233 --------KIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQ---GSLL 281
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
+ T K E ++ +K E + K + ++++ + +
Sbjct 282 GTLKTFKMEYEH--PIIRAREKDATPGEKALGLKISENLMEIIKP------YFLRRTKEE 333
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALII-- 554
Q + + + + + C +F + K++ + L L RK+ I
Sbjct 334 VQTKKADNPEARLGEKNPAGEAICDMFSLARKNDLIVWIRLLPLQEEIYRKFVSLDHIKE 393
Query 555 ------------------SEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE 596
+H R+ A + DE EQ+ +
Sbjct 394 LLMETRSPLAELGVLKKLCDHPRLLSARACRLLNLGTATFSAQDENEQEDVSNM-NSIDH 452
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
L + E+ K+ L +L+ + T++F ++ +++ ++ ++ N L
Sbjct 453 LPD--KTLIQESGKMIFLMSLLERL--QDEGHQTLVFSQSIKILNIIERLLK-NKHFKTL 507
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVILY 715
+ L ++ + F+ + ++++ L+ T V G+ + V+++
Sbjct 508 RIDGTVTH----------LWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIF 557
Query 716 EYVGNVIKMIQTRGR----GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTW 771
+ N Q R G+ + L + V EK +Y+ ++ DS++R T
Sbjct 558 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEK----IYRRQVFKDSLIRQTTG 613
Query 772 DEAVF 776
++
Sbjct 614 EKKNP 618
>sp|A3PFD7|UVRB_PROM0 UvrABC system protein B OS=Prochlorococcus
marinus (strain MIT 9301) OX=167546 GN=uvrB PE=3 SV=1
Length=679
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 87/628 (14%), Positives = 198/628 (32%), Gaps = 114/628 (18%)
Query 232 VSDTNLYSPFKPRNYQLELALPAMKGKNT-------IICAPTGCGKTF-VSLLICEHHLK 283
+++ L +P++P Q E +KG NT + TG GKTF ++ +I
Sbjct 1 MNNYKLQAPYEPNGDQPEAIKKLVKGVNTGKEFQTLLGA--TGTGKTFTIANVI------ 52
Query 284 KFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI------------------- 324
Q + A+ + Q + ++F ++
Sbjct 53 ---QQTGRPALVLAHNKTLAAQLCNELREFFPKNAVEYFISYYDYYQPEAYVPVSDTYIA 109
Query 325 -------SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 377
+ + E D+I+ + + G + E +
Sbjct 110 KTASINEEIDMLRHSATRSLFERKDVIV----VASISCIYGLGIPSEYLKAAVKFEVGKS 165
Query 378 SKQHPYNM-IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
Y ++ N + + ++ G + ++ L I ++A
Sbjct 166 INLRSYLRSLVENQYTRNDIEITRGRFRIKG----DVLEIGPAYEDRLIRIELFGDEVEA 221
Query 437 SVIATVK--HNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE 494
LE LEQV P K F + R+ I ++L + K LE
Sbjct 222 IRYVDPTTGEILESLEQVSVYPAKHFVTPKERLESAISAIRSELKTQLDKFTYE-GKLLE 280
Query 495 NLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
Q ++ + ++ + V+ ++ C + L +++
Sbjct 281 AQRLEQRTKYDLEMLKEVGYCNGVENYARHLSGREEGSPPE-CLIDYFPKDWLLVVDESH 339
Query 553 IIS---------EHARMKDALDYLKDFFSNVR------AAGFDEIEQDLTQRFEEKLQEL 597
+ + +R K +D+ S +++ +Q L EL
Sbjct 340 VTCPQLHAMYNGDQSRKKVLIDHGFRLPSAADNRPLKCEEFWEKSKQTLFISATPGQWEL 399
Query 598 --------ESVSRDPSNENP---------KLEDLCFILQEEYHLNPETITILFVKTRALV 640
E V R +P ++EDL ++ N ++ T+ +
Sbjct 400 DQCDGEFIEQVIRPTGVLDPVIDVRPSEGQIEDLLSEIRIRAEKNQ--RVLVTTLTKRMA 457
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
+ L +++ N ++ L ++ + + I+ + G++++L+ ++
Sbjct 458 EDLTDFLSENK----VRVRYL--------HSEIHSIERIEIIQDLRM-GEYDVLVGVNLL 504
Query 701 DEGIDIAQCNLVILYEYVGN-----VIKMIQTRGRGRARGSKCFLLTSNA--GVIEKEQI 753
EG+D+ + +LV + + +IQT GR LL ++ +++
Sbjct 505 REGLDLPEVSLVAILDADKEGFLRAERSLIQTIGRAARHVEGVALLYADNFTDSMKRAIS 564
Query 754 NMYKEKMMNDSILRLQTWDEAVFREKIL 781
+ + + ++ +KI
Sbjct 565 ETERRRTIQKKYNQVNGITPKPAGKKIE 592
>sp|A6ZL85|MAK5_YEAS7 ATP-dependent RNA helicase MAK5 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=MAK5 PE=3 SV=1
Length=769
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 54/333 (16%), Positives = 103/333 (31%), Gaps = 36/333 (11%)
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
+ D++ K+C + A ++ L + + + + L +
Sbjct 253 HQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEK 312
Query 481 DTESLAKRICKDLENLSQIQNREFGTQKYEQW--IVTVQKACMVFQMPDKDEESRICKAL 538
D +L KR K + +R ++++ I+ + + S+I + L
Sbjct 313 DN-TLIKRFSKVDTLILDEADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTL 371
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI--EQDLTQRFEEKLQE 596
+ D L S + + + +D + V +I +
Sbjct 372 IFSATFSIDLFDKLSSSRQVKDRRFKNN-EDELNAVIQHLMSKIHFNSKPVIIDTNPESK 430
Query 597 LESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
+ S ++ E P LE + + T++F V L ++
Sbjct 431 VSSQIKESLIECPPLERDLYCY--YFLTMFPGTTLIFCNAIDSVKKLTVYLNN------- 481
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFK----ASGDHN-----------ILIATSVAD 701
G ++ MT + L+ FK N +LIA+ VA
Sbjct 482 -----LGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAA 536
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
G+DI VI Y + I GR RA
Sbjct 537 RGLDIPGVQHVIHYHLPRSTDIYIHRSGRTARA 569
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/230 (17%), Positives = 79/230 (34%), Gaps = 19/230 (8%)
Query 264 APTGCGKTFVSLLICEHHLKKFPQGQKGKVV--FFANQIPVYEQQKSVFSKYFERH--GY 319
A TG GKT + L + K + F + Q K E
Sbjct 211 ASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFTPTRELAHQVTDHLKKICEPVLAKS 270
Query 320 RVTGISGATAENVPVEQIVENND----IIILTPQILVNNLK--KGTIPSLSIFTLMIFDE 373
+ + +S ++ +Q + D I+I TP + L+ I S +I DE
Sbjct 271 QYSILSLTGGLSIQKQQRLLKYDNSGQIVIATPGRFLELLEKDNTLIKRFSKVDTLILDE 330
Query 374 CHNTSKQ---HPYNMIMFNYL-----DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALD 425
+ + I+ + L +++ S + Q + +A+ + +
Sbjct 331 ADRLLQDGHFDEFEKIIKHLLVERRKNRENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQ 390
Query 426 YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ + + + A ++H + ++ KP ES++S + K +
Sbjct 391 VKDRRFKNNEDELNAVIQHLMSKIH-FNSKPVIIDTNPESKVSSQIKESL 439
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella
multocida (strain Pm70) OX=272843 GN=recG PE=3 SV=1
Length=693
Score = 66.7 bits (161), Expect = 6e-10, Method: Composition-based stats.
Identities = 41/249 (16%), Positives = 84/249 (34%), Gaps = 48/249 (19%)
Query 193 KDVETEDLEDKMETSDIQIFYQED-----------PECQNLSENSCPPSEVSDTNLYS-- 239
DV E LE + ++ ++E Q S +
Sbjct 206 PDVSLEALEKGTHPAQQRLIFEELLAHNLAMQKVRIGTQQFSAYPLSYQTDLKQRFLAQL 265
Query 240 PFKPRNYQLELALPAMKGKNT--------IICAPTGCGKTFVSLLICEHHLKKFPQGQKG 291
PF P + Q+ + ++ ++ G GKT V+ L +
Sbjct 266 PFTPTDAQVRVTQE--IEQDLTHPFPMMRLVQGDVGSGKTLVAALAALLAID-----NGK 318
Query 292 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILT 347
+V A + EQ + F ++FE G V ++G ++ + +++ T
Sbjct 319 QVALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGKARQTELEKIRTGQVQMVVGT 378
Query 348 PQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF-------NYLDQKLGGSSG 400
+ + ++ S L+I DE H H +M ++ +L ++
Sbjct 379 HALFQDEVE------FSDLALVIVDEQHR-FGVH--QRLMLREKGKQADHYPHQLIMTAT 429
Query 401 PLPQVIGLT 409
P+P+ + +T
Sbjct 430 PIPRTLAMT 438
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 11/92 (12%)
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
L L+ G++ GR M ++ I+ AFK + + ++L+AT+V + G+D+ +L+
Sbjct 515 LPHLRIGLVHGR--------MKPAEKQDIMQAFKQA-EIDLLVATTVIEVGVDVPNASLM 565
Query 713 ILYEYVG-NVIKMIQTRGR-GRARGSKCFLLT 742
I+ + ++ Q RGR GR + +L
Sbjct 566 IIENAERLGLSQLHQLRGRVGRGTTASFCVLM 597
>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A
OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0636300 PE=2
SV=1
Length=573
Score = 66.3 bits (160), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 66/189 (35%), Gaps = 7/189 (4%)
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP-SNENPKLEDL 614
AR L S V L+Q SV++ + P LE
Sbjct 350 RAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDANSNSPSNSVNQAAVDSLPPSLEHY 409
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT-GRGKTNQNTGM 673
+ ++ ++ I ++ + ++ L + + G T + +
Sbjct 410 YCTSKAQHKVDTLRRCIHALE----AQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDL 465
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
A+ +L FK G+ +L+ ++ G+D+ +C+LVI + + GR
Sbjct 466 GKLARSTVLKKFK-DGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGR 524
Query 734 RGSKCFLLT 742
G K ++T
Sbjct 525 LGRKGTVVT 533
Score = 50.2 bits (118), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/298 (13%), Positives = 83/298 (28%), Gaps = 20/298 (7%)
Query 266 TGCGKTFVSLLICEHHL----KKFPQGQKGK-----VVFFANQIPVYEQQKSVFSKYFER 316
TG GKT LL + + Q K V A + Q K
Sbjct 177 TGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAPSRELGMQIVREVEKILGP 236
Query 317 HGYRVTGISGATAENVPVEQIVENND--IIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R+ A E+ ++ N I++ TP + G + + S ++ DE
Sbjct 237 NDKRLVQQLVGGANRSRQEEALKKNKPIIVVGTPGRISEISAAGKLHTHSC-RFLVLDEV 295
Query 375 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASL 434
+ Y M L+ S ++G A+ ++ +
Sbjct 296 -DQLLSFNYREDMHRILEHVGRKSGTSSRDILG-------PLARRSERQTILVSATIPFS 347
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLE 494
+ H+ + + P + +S + ++ + LE
Sbjct 348 VIRAARSWGHDPVLVRAMSVVPLESITVPRPVLSQPDANSNSPSNSVNQAAVDSLPPSLE 407
Query 495 NLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
+ + + I ++ ++ M + + L + + L
Sbjct 408 HYYCTSKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFKLEARGMKATELHGDL 465
>sp|O60080|DBP9_SCHPO ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp9
PE=3 SV=1
Length=595
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/248 (20%), Positives = 98/248 (40%), Gaps = 29/248 (12%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ-GQKGKVVF---FA 297
KP + Q E A++GK+ + A TG GKT L+ L K Q + + +F
Sbjct 36 KPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLV 95
Query 298 NQIPVYEQQKSVFSKYFER--HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ +Q +V K R ++ +++ V +++ DI+I TP V ++
Sbjct 96 PTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHV 155
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY-LDQKLGGSSGPLPQ---VIGLTAS 411
G +P L ++ DE +M ++ ++ + S LP+ ++A+
Sbjct 156 ASGVLP-LDKLKFLVIDEA----------DLMLSFGYNEDMKTLSRSLPRGTQSFLMSAT 204
Query 412 VGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 471
+ + + KL + K +L Q V K + + + + I K
Sbjct 205 --------LSKNIASLQKLVCRNPFILAVKDKEASGKLTQYVVKCSEQDKFLLAYILLKL 256
Query 472 KYIIAQLM 479
+ I +++
Sbjct 257 RLIKGKIL 264
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/72 (17%), Positives = 25/72 (35%), Gaps = 3/72 (4%)
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNAGVIEKEQINMYKE 758
G+D V+ ++ N I G R G+ + + V + + ++
Sbjct 388 RGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESC 447
Query 759 KMMNDSILRLQT 770
K + RL+
Sbjct 448 KKDESVLRRLEK 459
>sp|Q6CKZ4|DBP6_KLULA ATP-dependent RNA helicase DBP6 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP6 PE=3 SV=1
Length=630
Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/294 (16%), Positives = 104/294 (35%), Gaps = 17/294 (6%)
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
S++ + K + + ++ + L + Q+++ + T K+ + + +A +
Sbjct 294 SKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFDLKTLKF----LVLDEADRLLN 349
Query 525 MPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQ 584
++ + L R N ++ +A + L + + + + +
Sbjct 350 QSFQNWNQVLFHHLTNDKQDKRPGNVIKMVFSATLTTNA-EKLYNLYLHNPKIFLTDSVK 408
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
+ +KLQEL + L L I + + ++FVK+ L+
Sbjct 409 LYSIP--KKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEASIRLE 466
Query 645 NWIEGNPKLSFLKPGI--LTGRGKTNQNTGMTLPAQKCILDAFKAS-GDHNILIATSVAD 701
+ + ++ +N + G + ++ F +S ++LI+T +
Sbjct 467 SLLHAMLGSGIIEDEYNMFLSSIHSNISKGSSRK----LIQEFASSEQKKSVLISTDIMA 522
Query 702 EGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKEQ 752
GIDI + VI Y+ + + + GR RA G LL Q
Sbjct 523 RGIDINEITHVINYDLPISSQQYVHRCGRTARANTEGIAINLLVGKGEQKFWSQ 576
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/117 (21%), Positives = 46/117 (39%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L+ K + + + Q SK +
Sbjct 230 DILVNASTGSGKTLAYSVPLVQILRS-RTVNKVRAIILVPTKILIHQVYDCLSKLSQGTS 288
Query 319 YRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V+ + + + N+ DI+I+TP LV++L+ + L ++ DE
Sbjct 289 LNVSMSKLENSLKEEHNKFLYNSPDILIITPGRLVDHLQMESFD-LKTLKFLVLDEA 344
>sp|P30015|LHR_ECOLI Probable ATP-dependent helicase Lhr OS=Escherichia
coli (strain K12) OX=83333 GN=lhr PE=3 SV=2
Length=1538
Score = 67.1 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/267 (19%), Positives = 92/267 (34%), Gaps = 42/267 (16%)
Query 222 LSENSCPPSEVSDTNLYSPF--------KPRNYQLELALPAMKGKNTIICAPTGCGKTFV 273
+++N P S + D + +P Q + A + ++ ++ APTG GKT
Sbjct 1 MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLA 60
Query 274 SLLICEHHL--------KKFPQGQKGKVVFFANQIPVYE--Q---QK-------SVFSKY 313
+ L L ++ + + ++++ + + Q Q +
Sbjct 61 AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG 120
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
RV +G T + DI+I TP+ L L +L +I DE
Sbjct 121 ETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDE 180
Query 374 CHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLC 431
H SK+ + + LD L S+ ++ GL+A+V A D L
Sbjct 181 VHAVAGSKRGAHLALSLERLDALLHTSAQ---RI-GLSATV--------RSASDVAAFLG 228
Query 432 ASLDASVIATVKHNLEELEQVVYKPQK 458
+V+ ++ VV
Sbjct 229 GDRPVTVVNPPAMRHPQIRIVVPVANM 255
Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 20/128 (16%)
Query 629 ITILFVKTRALVDALK-NW-------IEGNPKLSFLKPGILTGRGKTNQ----------- 669
TI+F +R L + L ++ +P ++ + G T+
Sbjct 294 STIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 353
Query 670 -NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ G Q+ I + SG+ ++ATS + GID+ +LVI +V +Q
Sbjct 354 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRI 413
Query 729 GRGRARGS 736
GR +
Sbjct 414 GRAGHQVG 421
>sp|Q54S03|DDX18_DICDI Probable ATP-dependent RNA helicase ddx18
OS=Dictyostelium discoideum OX=44689 GN=ddx18 PE=3 SV=1
Length=602
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 56/132 (42%), Gaps = 6/132 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK--FPQGQKGKVVFFANQIPVYE 304
Q + LP ++GK+ + A TG GKT L+ L K F V+ + +
Sbjct 146 QAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELAL 205
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPS 362
Q V + + H + G ++ E++ + ++++ TP L+++L+ G I
Sbjct 206 QIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLVATPGRLLDHLQNTKGFITK 265
Query 363 LSIFTLMIFDEC 374
+I DE
Sbjct 266 --NLKCLIIDEA 275
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L N I+F+ + V + +++ +L G+
Sbjct 355 LLYTFLKKNLSKKIIVFLSSCNAVKYTAELL------NYIDIPVLELHGRQK------QQ 402
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG 735
+ F + + ILI T VA G+DI + +I Y+ + + I GR R G
Sbjct 403 KRTNTFYEF-VNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVG 461
Query 736 SK 737
K
Sbjct 462 KK 463
>sp|Q87LD0|RAPA_VIBPA RNA polymerase-associated protein RapA OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
OX=223926 GN=rapA PE=3 SV=1
Length=969
Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 68/472 (14%), Positives = 147/472 (31%), Gaps = 61/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLSGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQ 380
+ A AEN + ++ + L + K+ + L++ DE H+ S+
Sbjct 236 IEAFADAENP-----FDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSQD 290
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
P Q + G + P V+ LTA+ ++ + +L LD
Sbjct 291 KPSRE------YQVVEGLAERTPGVLLLTATPEQLGRES------HFARL-RLLDPDRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+ +EE EQ ++ D+ K I +L L+++ + L + +
Sbjct 338 DYEAFVEEEEQYAPVADAITSLFSGEKLPDEAKNQITEL------LSEQDVEPLFRIIES 391
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+ E Q ++ K HL + I ++
Sbjct 392 NSDEEAKASARQELIDNLMDRHGTGRVLFRNTRAAIKGFPTRNVHLMPMD---IPQQYTT 448
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ S+ A + +++ Q FE + + L
Sbjct 449 SMRVAGMIGGKMSSEARAMKNLYPEEIFQEFE-----------GDDASWWQFDSRVNWLL 497
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
E+ ++ + L+ + ++ + + GM++ +
Sbjct 498 EKVKEKRGEKILVIASRASTALQLEQALRER---EGIRATVF--------HEGMSILERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 547 KAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|A3D001|RAPA_SHEB5 RNA polymerase-associated protein RapA OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) OX=325240
GN=rapA PE=3 SV=1
Length=968
Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats.
Identities = 65/475 (14%), Positives = 141/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILIIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVIPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A K + +L+++
Sbjct 321 SHFARLRLLD-----PDRFYDYDAFLAEEDSYKDVAIAAEALAGNTKLPDAAINSLTELL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ ++ Q + E + L + + A + R
Sbjct 376 GEK--DISPSIRLIQADGIDAEVQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRF 433
Query 561 KDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+A + + + R +G + L + + L ++L D S K +
Sbjct 434 FNAYPHAMPDQYQTAARVSGMMGGHKSLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L E + ++ +L+ + G T + GM++
Sbjct 494 WLIEFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|P23128|DDX6_DROME ATP-dependent RNA helicase me31b OS=Drosophila
melanogaster OX=7227 GN=me31B PE=1 SV=3
Length=459
Score = 66.0 bits (159), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/269 (18%), Positives = 92/269 (34%), Gaps = 38/269 (14%)
Query 545 LRKYNDALIISEH-ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE-SVSR 602
LR Y +I R+ D +D S+ R DE ++ L+ F+ L + + +
Sbjct 171 LRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPK 230
Query 603 DP--------------SNENPKLEDLCFI-LQEEYHLNPETITILFVKTRALVDALKNWI 647
DP + L + I L EE L T FV+ R V L
Sbjct 231 DPQILLFSATFPLTVKNFMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLF 290
Query 648 EGNPKLSFL-------KPGILT------GRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
+ + +L G + M + + F+ G L
Sbjct 291 SKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFR-QGLCRNL 349
Query 695 IATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRGRGRARGSKCFLLTSNAGVIEKE 751
+ + + GID+ N+VI +++ + I GR G L+T ++
Sbjct 350 VCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYE----DRF 405
Query 752 QINMYKEKMMNDSILRLQTWDEAVFREKI 780
++ ++++ + + D A++ +
Sbjct 406 DLHRIEKELGTEIKPIPKVIDPALYVANV 434
Score = 59.0 bits (141), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/374 (16%), Positives = 116/374 (31%), Gaps = 29/374 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q A+ GK+ + A G GKT + + P + +
Sbjct 80 RPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQID--PTKDYIQALVMVPTRE 137
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q + + + RV +G T + +I + +II TP +++ L +
Sbjct 138 LALQTSQICIELAKHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILD-LMDKKVA 196
Query 362 SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
+S +++ DE F + + PQ++ +A+ + +
Sbjct 197 DMSHCRILVLDEADKLLSLD------FQGMLDHVILKLPKDPQILLFSATFPLTVKNFME 250
Query 422 EALD--YICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
+ L Y L L + ++E Q V+ F K++ S F
Sbjct 251 KHLREPYEINLMEELTLKGVTQYYAFVQE-RQKVHCLNTLFSKLQINQSIIFCNS----T 305
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ E LAK+I + + + + + + +C LF
Sbjct 306 QRVELLAKKITE----------LGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLF 355
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
++ N + + A YL + R +T L +E
Sbjct 356 TRGIDVQAVNVVINFDF---PRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEK 412
Query 600 VSRDPSNENPKLED 613
PK+ D
Sbjct 413 ELGTEIKPIPKVID 426
>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides
immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1
Length=604
Score = 66.3 bits (160), Expect = 8e-10, Method: Composition-based stats.
Identities = 40/221 (18%), Positives = 76/221 (34%), Gaps = 35/221 (16%)
Query 552 LIISEHARMKDALDYLKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP- 609
L+I+ R+ D L F F N++A DE ++ L FE++++++ + +
Sbjct 249 LLIATPGRLLDHLQNTDGFVFKNLKALVIDEADRILEVGFEDEMRQIVKILPSEDRQTML 308
Query 610 -------KLEDLCFI-------------LQEEYHLNPETITILFVKTRALVDALKNWIEG 649
K+EDL I +E + + + L ++++
Sbjct 309 FSATQTTKVEDLARISLRPGPLYINVDHRKEHSTVEGLEQGYVICDSDKRFLLLFSFLKR 368
Query 650 NPKLSFL----KPGILTGRGKTNQNTGM-------TLPAQKCILDAFKA-SGDHNILIAT 697
N K + + + + QK F+ + LI T
Sbjct 369 NLKKKIIVFFSSCNCVKYHAELLNYIDLPVLDLHGKQKQQKRTNTFFEFCNAKQGTLICT 428
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSK 737
VA G+DI + +I ++ + I GR R K
Sbjct 429 DVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGANGK 469
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 29/196 (15%)
Query 206 TSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY-QLELALPAMK-------- 256
S + Q+D + + PS + + + +P+ + +L L+ +K
Sbjct 87 ASQPPV-EQDDEQKSESEQQPELPSLNALSLPQTENEPQKFTELNLSEKTLKAIQEMGFE 145
Query 257 ---------------GKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFAN 298
G++ + A TG GKT + + L+ P+ G +V +
Sbjct 146 TMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVIV-VSP 204
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q V + H + G E++ + +++I TP L+++L+
Sbjct 205 TRELALQIFGVARELMAHHSQTYGIVIGGANRRAEAEKLTKGVNLLIATPGRLLDHLQNT 264
Query 359 TIPSLSIFTLMIFDEC 374
++ DE
Sbjct 265 DGFVFKNLKALVIDEA 280
>sp|A1DNF9|DBP4_NEOFI ATP-dependent RNA helicase dbp4 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp4
PE=3 SV=1
Length=810
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 5/151 (3%)
Query 226 SCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF 285
S P + ++ Y + Q A+KG++ + A TG GKT L+ +L +
Sbjct 55 SEPTASGLASSHYKTLT--DIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRK 112
Query 286 PQG--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDI 343
+ + + Q V K H + + G ++ + +I
Sbjct 113 QWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGG-KSLKEEQERLGRMNI 171
Query 344 IILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
++ TP ++ +L + + +++ DE
Sbjct 172 LVCTPGRMLQHLDQTALFDTYNLQMLVLDEA 202
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/179 (21%), Positives = 59/179 (33%), Gaps = 23/179 (13%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
IL N ++ T++F+ + V + L+PGI Q G
Sbjct 279 LDILWSFIRSNLKSKTMVFLSSGKQVRFV------YESFRHLQPGIPLMHLHGRQKQG-- 330
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR- 732
+ I+ F S +L +T VA G+D + VI + + I GR R
Sbjct 331 --GRLDIVTRFSQSKHC-VLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY 387
Query 733 ARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSIL------RLQTWDEAVFREKIL 781
R + L + EQ + EK+ + +LQ K L
Sbjct 388 EREGRAVLFLDPSEEEGMLKRLEQKKVPIEKINIKANKQQSIKDQLQNMCFKDPELKYL 446
>sp|Q9GZR7|DDX24_HUMAN ATP-dependent RNA helicase DDX24 OS=Homo
sapiens OX=9606 GN=DDX24 PE=1 SV=1
Length=859
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/348 (14%), Positives = 99/348 (28%), Gaps = 45/348 (13%)
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+LD +K L++ ++ ++ R+ K
Sbjct 355 ENEEENLDKEQTGNLKQELDD----------KSATCKAYPKRPLLGLVLTPTRELAVQVK 404
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 547
+ + + I+ Q + + + K + +LR+
Sbjct 405 QHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQ 464
Query 548 YNDALIISEHARM--KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
L++ E RM K L + + ++ Q L L
Sbjct 465 LR-CLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHK 523
Query 606 NENPKLED--LCFILQEEYHLNPETITILFVKTRALVDALKN----------------WI 647
K++ +L ++ + + I + A V+ L ++
Sbjct 524 KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFL 583
Query 648 EGNPKLSFLKPGILTGRGKTNQ------------NTGMTLPAQKCILDAFKASGDHNILI 695
P S + ++ + + + M + L+ F D +L+
Sbjct 584 MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDC-VLL 642
Query 696 ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
AT VA G+DI + VI Y+ + GR RA L+
Sbjct 643 ATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLML 690
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ + Q K G + + G + + +I++ TP L
Sbjct 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWE 450
Query 354 NL--KKGTIPSLSIFTLMIFDEC 374
+ K + +L ++ DE
Sbjct 451 LIKEKHYHLRNLRQLRCLVVDEA 473
>sp|Q5RDL2|DDX24_PONAB ATP-dependent RNA helicase DDX24 OS=Pongo
abelii OX=9601 GN=DDX24 PE=2 SV=1
Length=859
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/348 (14%), Positives = 99/348 (28%), Gaps = 45/348 (13%)
Query 428 CKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAK 487
+LD +K L++ ++ ++ R+ K
Sbjct 355 ENEEENLDKEQTGNLKQELDD----------KSATCKTYPKRPLLGLVLTPTRELAVQVK 404
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 547
+ + + I+ Q + + + K + +LR+
Sbjct 405 QHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWELIKEKHYHLRNLRQ 464
Query 548 YNDALIISEHARM--KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 605
L++ E RM K L + + ++ Q L L
Sbjct 465 LR-CLVVDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHK 523
Query 606 NENPKLED--LCFILQEEYHLNPETITILFVKTRALVDALKN----------------WI 647
K++ +L ++ + + I + A V+ L ++
Sbjct 524 KHTKKMDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDFYLYYFL 583
Query 648 EGNPKLSFLKPGILTGRGKTNQ------------NTGMTLPAQKCILDAFKASGDHNILI 695
P S + ++ + + + M + L+ F D +L+
Sbjct 584 MQYPGRSLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFARLEDC-VLL 642
Query 696 ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
AT VA G+DI + VI Y+ + GR RA L+
Sbjct 643 ATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLML 690
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query 294 VFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 353
+ + Q K G + + G + + +I++ TP L
Sbjct 391 LVLTPTRELAVQVKQHIDAVARFTGIKTAILVGGMSTQKQQRMLNRRPEIVVATPGRLWE 450
Query 354 NL--KKGTIPSLSIFTLMIFDEC 374
+ K + +L ++ DE
Sbjct 451 LIKEKHYHLRNLRQLRCLVVDEA 473
>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus
musculus OX=10090 GN=Ddx54 PE=1 SV=1
Length=874
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ + A TG GKT LL LK + + + + Q +
Sbjct 130 LDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELG 189
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + I G + EN DIII TP LV+ + + L ++FDE
Sbjct 190 KFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNL-KLQSVEYVVFDEA 248
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/268 (21%), Positives = 97/268 (36%), Gaps = 41/268 (15%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ KL E S E+ K L ++LQ + P+ T++FV T+ + L + G
Sbjct 303 DSKLNEQLKTSFLLVREDTKAAVLLYLLQNV--VRPQDQTVVFVATKHHAEYLTELLMGQ 360
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G + + + A+K L F + LI T +A G+DI +
Sbjct 361 ------------GVSCAHIYSALDQTARKINLAKF-THNKCSTLIVTDLAARGLDIPLLD 407
Query 711 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRL 768
VI Y + + GR RA R + L + V ++++ + + L
Sbjct 408 NVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGR-----SVTL 462
Query 769 QTWDEAVFREKILHIQTHEKFIRDS--QEKPKPVPDKENKKLLCRKCKALACYTADVRVI 826
E + RD P+ V D E+ L + + D++ +
Sbjct 463 ARPCEE--------PSVADAVGRDGVLGRVPQSVVDDEDSSL-----QTAMGASLDLQGL 509
Query 827 EECHYTVLGDAFKECFVSRPHPKPKQFS 854
+ V +A ++ SRP P P+
Sbjct 510 ----HRVANNAQQQYVRSRPAPSPESIK 533
>sp|A5E3K3|DBP4_LODEL ATP-dependent RNA helicase DBP4 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP4 PE=3 SV=1
Length=775
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 48/322 (15%)
Query 469 DKFKYIIAQLMRDTESLAKRICK------DLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
+ F + +D + +RI + +SQ N G + ++ + +A
Sbjct 147 NSFSAGLVTGGKDVQYEKERISRMNILVGTPGRISQHLNESVGMETSNLQVLVLDEADRC 206
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISE-HARMKDALDYLKDFFSNVRAAGFDE 581
M + + I HL + L+ S H L L D+
Sbjct 207 LDMGFRKQIDNILN-------HLPRTRQTLLFSATHTDSVQDLARLSLTNPKRIGTSSDQ 259
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILF---VKTRA 638
+ + ++ ++ N KL+ L ++ + ++F K
Sbjct 260 DISAIPESLDQYYVKVP--------LNEKLDVLWSFIKSHLK----SKILVFFSSSKQVQ 307
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
++ P + +K L GR K ++ F + H L AT
Sbjct 308 YAYETFRTLQ--PGIPLMK---LYGRHK--------QTSRLETTVKF-SQAQHACLFATD 353
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-ARGSKCFLL---TSNAGVIEKEQI 753
+ G+D + VI + +V + GR R R K L+ T G++++ ++
Sbjct 354 IVARGLDFPAIDWVIQVDCPEDVATYVHRVGRSARFGRQGKSLLMLLPTEEDGMLKRMKV 413
Query 754 NMYKEKMMNDSILRLQTWDEAV 775
+ + KMMN ++ +
Sbjct 414 HKIEPKMMNIKEKSKKSIRPQL 435
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/207 (18%), Positives = 78/207 (38%), Gaps = 17/207 (8%)
Query 174 ALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIF-YQEDPECQNLSENSCPPSEV 232
L ++ + SE ++ + +E E E + I + + P QN S V
Sbjct 14 VLSRKEKRQSEKEEMDSLRQRIE----EYNPEVDEASIKHFSDLPITQNTLRGLKECSFV 69
Query 233 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQK 290
S T++ Q + A+KG++ + A TG GKT L+ L +
Sbjct 70 SLTDI---------QKKSIPVALKGEDLMGTARTGSGKTLAFLIPVIEILLRNDITEYDG 120
Query 291 GKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQI 350
+ + + Q V +K + + + ++G + ++ + +I++ TP
Sbjct 121 LAALIVSPTRELAVQIFEVLAKIGKYNSFSAGLVTGG-KDVQYEKERISRMNILVGTPGR 179
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNT 377
+ +L + S +++ DE
Sbjct 180 ISQHLNESVGMETSNLQVLVLDEADRC 206
>sp|Q0CMM5|DBP4_ASPTN ATP-dependent RNA helicase dbp4 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp4
PE=3 SV=2
Length=804
Score = 66.3 bits (160), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/130 (18%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ +L + + + +
Sbjct 73 QSRAVSHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWAEHDGLGALILSPTRELAI 132
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K R+ + G+ ++ + +I++ TP ++ +L + +
Sbjct 133 QIFEVLRKV-GRYHHFSAGLVIGGKSLKEEQERLGKMNILVCTPGRMLQHLDQTALFDTY 191
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 192 NLQMLVLDEA 201
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 70/420 (17%), Positives = 132/420 (31%), Gaps = 49/420 (12%)
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
+ P + GL+AS A+ + K L A+ + + L
Sbjct 45 FKAFTDLPLSEPTLSGLSASHYKTLTDIQSRAVSHALKGRDILGAAK----TGSGKTLAF 100
Query 452 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQ 507
++ + +RK + + + A ++ T LA +I + L + + + G +
Sbjct 101 LIPVLENLYRKQWA----EHDGLGALILSPTRELAIQIFEVLRKVGRYHHFSAGLVIGGK 156
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
++ + K ++ P + + ALF + D + +D +
Sbjct 157 SLKEEQERLGKMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRIMDMGFQKTVDAI 216
Query 568 KDFFSNVRAAGFDEIEQ--DLTQRFEEKLQELESVSRDPSNENPKLEDLCF--------- 616
R Q ++ LQ+ E V+ + + L
Sbjct 217 IGHLPKERQTMLFSATQTKKVSDLARLSLQDPEYVAVHEAAASATPSTLQQHYVVTPLPQ 276
Query 617 ---ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
IL N ++ TI+F+ + V + L+PGI Q G
Sbjct 277 KLDILWSFIRSNLKSKTIVFLSSGKQVRFV------YEAFRHLQPGIPLMHLHGRQKQG- 329
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
+ I + + H +L +T VA G+D + VI + + I GR R
Sbjct 330 ---GRLDITTKY-SQAKHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTAR 385
Query 733 -ARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSIL------RLQTWDEAVFREKIL 781
R + L + EQ + EK+ + +LQ K L
Sbjct 386 YERDGRAVLFLDPSEEQGMLKRLEQKKVPVEKINVKANKQQSIKNQLQNMCFKDPELKYL 445
>sp|Q2L244|UVRB_BORA1 UvrABC system protein B OS=Bordetella avium
(strain 197N) OX=360910 GN=uvrB PE=3 SV=1
Length=676
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 70/560 (13%), Positives = 174/560 (31%), Gaps = 88/560 (16%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVT--- 322
TG GKTF + + + + + A + Q + +F ++
Sbjct 50 TGSGKTF----TMANVIARLGRP----ALVLAPNKTLAAQLYAEMRDFFPKNAVEYFVSY 101
Query 323 -----------GISGATAENVPVEQIVENNDIIILTPQILV--NNLKKGTIPSLSIFT-- 367
++ V + +E + T +L + + GT+ +
Sbjct 102 YDYYQPEAYVPTRDLFIEKDSSVNEHIEQMR-LSATKSLLERRDTIIVGTVSCIYGIGNP 160
Query 368 ------LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTD 421
++I S++ ++ + + +V G T + ++
Sbjct 161 GDYHAMVLILRAGDRISRREVLARLVAMQYTRNDADFTRGAFRVRGETIDIFPAESPELA 220
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
L +L+ T K ++L + P + + + I +L
Sbjct 221 LRLTLFDDEVETLELFDPLTGKV-RQKLPRFTVYPGSHYVTPRETVLRAIETIREELRER 279
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDE--------- 530
+ K LE Q F + ++ + ++ E
Sbjct 280 LSTFTNE-GKLLEAQRIEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYL 338
Query 531 ---------ESRICKALFLYTSHLRKYNDALIISEHARMKDALD----YLKDFFSNVRAA 577
ES + + ++ R+ ALD L++F + +R
Sbjct 339 PADALMFIDESHVTVGQLGGMYRGDRARKETLVQYGFRLPSALDNRPLRLEEFEARMRQC 398
Query 578 GF-DEIEQDLTQRFEEKLQEL---ESVSRDPSNE----NPKLEDLCFILQEEYHLNPETI 629
F D ++ + + E + DP E + +++DL ++ + + +
Sbjct 399 VFVSATPADYERQHADNVVEQVVRPTGLVDPEVEVRPAHTQVDDLLGEIR--HRVARQER 456
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG 689
++ T+ + + L +++ + ++ L ++ + + I+ + G
Sbjct 457 VLVTTLTKRMSEDLTDFLAEH----GVRVRYL--------HSDIDTVERVEIIRDLRL-G 503
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTS 743
++L+ ++ EG+DI + +LV + + + +IQT GR R L
Sbjct 504 VFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGHAILYAD 563
Query 744 NAGVIEKEQINMYKEKMMND 763
+ ++ +
Sbjct 564 RITDSMRRAMDETSRRRSKQ 583
>sp|Q7RZ35|DBP4_NEUCR ATP-dependent RNA helicase dbp-4 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-4 PE=3 SV=1
Length=823
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/123 (19%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYEQQKSVFS 311
A+KG++ + A TG GKT L+ L + + + + Q V
Sbjct 91 ALKGQDILGAARTGSGKTLAFLVPVLEKLYRARWTEYDGLGALIISPTRELAVQIFEVLR 150
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K H + + G + E+ + +I++ TP ++ +L + + +++
Sbjct 151 KIGRNHSFSAGLVIGGKSLKEEAER-LGRMNILVCTPGRMLQHLDQTAGFDVDNLQMLVL 209
Query 372 DEC 374
DE
Sbjct 210 DEA 212
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/137 (22%), Positives = 50/137 (36%), Gaps = 23/137 (17%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFV----KTRALVDALKNWIEGNPKLSFLKPGI 660
+ KL+ L L+ N ++ I+F+ + R + ++ K G P L
Sbjct 283 TPLPEKLDTLWGFLR----TNLKSKIIVFMSSGKQVRFVYESFKRMQPGIPLLHL----- 333
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
G+ Q + I + F S ++ L AT V G+D + VI + +
Sbjct 334 ---HGRQKQIA------RLEITNRF-TSAKYSCLFATDVVARGVDFPAVDWVIQVDCPED 383
Query 721 VIKMIQTRGRGRARGSK 737
I GR SK
Sbjct 384 ADTYIHRVGRTARYESK 400
>sp|Q0CI35|MAK5_ASPTN ATP-dependent RNA helicase mak5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=mak5
PE=3 SV=2
Length=774
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 19/117 (16%)
Query 625 NPETITILFVKTRALVDALKNWIE--GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+P+ T++F + + V L +++ P L+ ++ M A+ +
Sbjct 501 HPKHRTLVFTNSISAVRRLTQFLQALQLPALAL--------------HSSMAQKARLRSV 546
Query 683 DAFKASGD--HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGS 736
+ F + IL+AT VA G+DI + VI Y + GR RA S
Sbjct 547 ERFSSPTADPSTILVATDVAARGLDIKGIDFVIHYHAPRTADTYVHRSGRTARAGAS 603
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/199 (18%), Positives = 76/199 (38%), Gaps = 17/199 (9%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQLEL 250
+ + +D++ + + +Q ++D + E+ E+ ++ F P Q
Sbjct 173 LPSQKDKDIKPGLSFAALQDAEEDDGVDISAWESLGLSPEILNSLSKLKFSSPTAVQKSC 232
Query 251 ALPAMKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGK---------VVFFANQI 300
P + G + + A TG GKT + I E++L+K + K K + +
Sbjct 233 IPPILDGHDVVGKASTGSGKTLAFGIPILEYYLEKKRRETKNKDDKKETSPIALILSPTR 292
Query 301 PVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK- 356
+ Q + R+ ++G + ++++ DI+I TP + L
Sbjct 293 ELAHQLVKHIGEVITHAPGVNARIALLTGGLSVQKQ-QRLLNGADIVIGTPGRVWEVLSG 351
Query 357 -KGTIPSLSIFTLMIFDEC 374
+G I + ++ DE
Sbjct 352 GQGLISKMKEIKYLVVDEA 370
>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia
conorii (strain ATCC VR-613 / Malish 7) OX=272944
GN=mfd PE=3 SV=1
Length=1122
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 90/245 (37%), Gaps = 36/245 (15%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
+IC G GKT V+ + + K +V + Q S F + F+ G
Sbjct 603 LICGDVGFGKTEVA-MRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN 661
Query 321 VTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
+ +S + + E +III T +L N+K L+I DE +
Sbjct 662 IKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIK--FFN----LKLLIIDEEQH 715
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
F ++ S V+ ++A+ + ++ + +L
Sbjct 716 -----------FGVGQKEFLKSLKSSSHVLAMSATPI---PRTLQMSMTGLKEL------ 755
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF----KYIIAQLMRDTESLAKRICKD 492
S+IAT N E+ V P ++ + + F + + ++D E +AK++ +
Sbjct 756 SIIATPPLNRLEVHTSV-MPYDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQI 814
Query 493 LENLS 497
+ LS
Sbjct 815 VPELS 819
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/84 (24%), Positives = 41/84 (49%), Gaps = 5/84 (6%)
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY----VGNVIKMIQTR 728
MT ++ F +G +IL++T++ + GIDIA+ N +I++ + + ++
Sbjct 827 MTPSKIDEVMSEF-YAGKFDILVSTTIIESGIDIAEANTMIIHNADMLGLSQLYQLRGRI 885
Query 729 GRGRARGSKCFLLTSNAGVIEKEQ 752
GRG+ RG + S+ +
Sbjct 886 GRGKMRGYAYLTVASHKKMTSHSL 909
>sp|Q4DCH3|JBP2_TRYCC Bifunctional helicase and thymine dioxygenase
JBP2 OS=Trypanosoma cruzi (strain CL Brener) OX=353153
GN=JBP2 PE=3 SV=1
Length=1086
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 76/547 (14%), Positives = 171/547 (31%), Gaps = 75/547 (14%)
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV 309
+ KG +I G GKT +SL +C H+ V+ A +I + +
Sbjct 532 VVDRLSKGNGCVIALTMGLGKTLLSLALCYSHMYD---QNPRDVLILAPKIVLT--HWTG 586
Query 310 FSKYFERHGYRVTGISGATA-ENVPVEQIVENND------------IIILTPQILVNNLK 356
+ +E++G + + ++V E ++ + ++ P+ + LK
Sbjct 587 EKQKWEKYGLVFSHFVVSDGTDSVSFEIALKRYKQQLNGELPRTSHVFVINPEYIRTVLK 646
Query 357 K--GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
K G P +L+I DE H S + + ++L+ + +VI L+ +
Sbjct 647 KLTGFRP-----SLIIVDEGHRVSSKGSK---LKDWLEGLRCTA-----RVI-LSGTPVQ 692
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR---KVESRISDKF 471
+A+ + +I S+ + T + + + + I +
Sbjct 693 NNAEELYRLIGWINSDVHSVLPPRVFTDLA--GTINRYINGDDSALAAAVSAQRYIQEWM 750
Query 472 KYIIAQLMRDTESLAKR--ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKD 529
+ +M+ I ++ + + + + +++ +
Sbjct 751 CSYVFSVMKTDLPPLNDYIIICGFSSIQRKMLEDHFGMEGIDGLTSIKASEHRPYHLSTH 810
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQR 589
+ +Y S L + +E + DE +
Sbjct 811 PLCFLGFISGVYKS-LNGNHKLTPEAEEELESQEYASQLYSLTEDDIGLIDECLSLVNSG 869
Query 590 FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEG 649
F + L + K+ L IL + I+F + D + +
Sbjct 870 FLTEFVGL----------SGKMTVLISIL--HSIREKKEKAIIFSQYVGSQDFISRTLTS 917
Query 650 NPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQ 708
+ + GR ++ ++ F+ L++T + G+D
Sbjct 918 FD----IVSSTIRGR--------DCHERRRRTIEKFREDEKITCLLLSTQIGAYGLDFTA 965
Query 709 CNLVILYEYVGNVIKMIQTRGRG-RARGSKCFLLTSNAGVIEKEQINMYKEK-------M 760
N VIL++ N Q R R ++ ++ A E + + + +
Sbjct 966 ANHVILWDSWWNPQVESQAIARAYRRNQTRAVIVYRLASEFEDTIVLKTQIRKLALFRCI 1025
Query 761 MNDSILR 767
MN+ R
Sbjct 1026 MNEEASR 1032
>sp|P45125|UVRB_HAEIN UvrABC system protein B OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421
GN=uvrB PE=3 SV=1
Length=679
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 62/456 (14%), Positives = 146/456 (32%), Gaps = 52/456 (11%)
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE 450
D G S G +P+ T + LD I + L + +K + E
Sbjct 232 FDPLTGSSFGAVPR---FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEE 288
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
Q + + +F + + ++ Y E+ ++ + E
Sbjct 289 QRISQRTQF----DIEMMNELGYC-----SGIENYSRYLSGRNEGEPP---PTLFDYMPP 336
Query 511 QWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
I+ + ++ + M D + + + N L E R+ Y
Sbjct 337 DAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIY 396
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
+ D R L L + + +++DL ++ +
Sbjct 397 VSATPGAYELEKSGSEIIDQVVRPTGLLDPLIEIRP----VSIQVDDLLSEARQ--RADK 450
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++ T+ + + L ++++ + ++ L ++ + + I+ +
Sbjct 451 NERVLVTTLTKKMAEDLTDYLDEH----GIRVRYL--------HSDIDTVERVEIIRDLR 498
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFL 740
G+ ++L+ ++ EG+DI + +LV + + + +IQT GR R K L
Sbjct 499 L-GEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAIL 557
Query 741 LTSN-----AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQE 795
+ I + K+ N+ + E + Q + + +++
Sbjct 558 YADSITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQ 617
Query 796 KPKPVPDKENKKLLCRKCKALACYTADVRVIEECHY 831
+ K + L K Y ++ +E+ Y
Sbjct 618 RGKMAAE---PTALYNAPKNAKEYQQQIKKLEQQMY 650
>sp|B2VGQ6|RAPA_ERWT9 RNA polymerase-associated protein RapA OS=Erwinia
tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463
/ NCPPB 4357 / Et1/99) OX=465817 GN=rapA PE=3 SV=1
Length=968
Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 65/472 (14%), Positives = 145/472 (31%), Gaps = 63/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + +I L+ G+ +V+ + Q + R R
Sbjct 180 GLGKTIEAGMIIHQQLQ---AGRAERVLIVVPE----TLQHQWLVEMLRRFNLRFALFDD 232
Query 327 A--TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHP 382
+ + + +II + + N ++ + + + LM+ DE H+ S+ P
Sbjct 233 DRYAQAQLDSDNPFDTEQMIICSLDFVRRNKQRLEKLADAEWDLMVVDEAHHLVWSEDAP 292
Query 383 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATV 442
Q + + +P ++ LTA+ ++ LD
Sbjct 293 SRE------YQVIEQLAEQVPGILLLTATP-------EQLGMESHFARLRLLD------- 332
Query 443 KHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC--KDLENLSQIQ 500
+ Q V + QK F + ++ ++ D +L + +D+E L Q
Sbjct 333 PDRFHDFAQFVEE-QKHFSPIADAVTLLLAD--QKIGNDELNLLNDLMGEQDIEPLLQTA 389
Query 501 NREF-GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
N + G Q ++++ K L + L
Sbjct 390 NSDREGKLAARQELISMLMDRHGTSRVLFRNTRNGVK--GFPKRELHQIRLPLPTQYQTA 447
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+K + ++ RA EQ + + S + L
Sbjct 448 IKVSGIMSARKTADERAQDMLYPEQIYQEFEGD------------SGTWWNFDPRVEWLM 495
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
N + ++ A L+ + ++ + + G+++ +
Sbjct 496 GYLTSNRDKKVLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGLSIIERD 544
Query 680 CILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + D +L+ + + EG + + +++++ N + Q GR
Sbjct 545 RAAAWFASEEDGAQVLLCSEIGSEGRNFQFASQMVMFDLPFNPDLLEQRIGR 596
>sp|Q0DLB9|RH17_ORYSJ DEAD-box ATP-dependent RNA helicase 17 OS=Oryza
sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2
Length=591
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/148 (20%), Positives = 51/148 (34%), Gaps = 20/148 (14%)
Query 609 PKLEDLCFILQEEYHLNPETITILF------VKTRALVDALKNW-----IEGNPKLSFLK 657
+L L IL+ + ++F V V + W ++ + K F+
Sbjct 305 SRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFIS 364
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY 717
+ G M +K F +S IL++T VA G+D + +I Y+
Sbjct 365 CKVFRLHGN------MDQDDRKKSFLGF-SSEKSAILVSTDVAARGLDFPKVKCIIQYDS 417
Query 718 VGNVIKMIQTRGR-GR-ARGSKCFLLTS 743
G + + GR R + L
Sbjct 418 PGEASEYVHRVGRTARIGEKGEALLFLQ 445
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 5/133 (4%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLK----KFPQGQKGKVVFFANQIPV 302
Q + AM G++ ++ A TG GKT L H L+ + + + +
Sbjct 51 QAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTREL 110
Query 303 YEQQKSVFSKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
Q + + R + V G I G ++ + I+I TP L+++L+ +
Sbjct 111 CLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSF 170
Query 362 SLSIFTLMIFDEC 374
++FDE
Sbjct 171 VYPNMRWIVFDEA 183
>sp|A6ZSB3|DBP6_YEAS7 ATP-dependent RNA helicase DBP6 OS=Saccharomyces
cerevisiae (strain YJM789) OX=307796 GN=DBP6 PE=3 SV=1
Length=629
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 17/205 (8%)
Query 572 SNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY-------HL 624
+ + G + + L + +KL +L + + + P + + L Y H
Sbjct 386 NTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSIYKPLILLYSICQFMAHS 445
Query 625 NPETITILFVKTRALVDALKNWIE----GNPKLSFLKPGILTGRGKTNQNTGMTLPAQKC 680
++FVK+ L ++ + S LK + N+ + K
Sbjct 446 PIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKK 505
Query 681 ILDAFK---ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR-- 734
I+ F S ILI T + GIDI VI Y+ + + + GR RA
Sbjct 506 IVANFSHPSESAGITILITTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANEL 565
Query 735 GSKCFLLTSNAGVIEKEQINMYKEK 759
GS LL + +N ++
Sbjct 566 GSAYNLLVGRGERTFFDDLNKDLDR 590
Score = 56.7 bits (135), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/117 (21%), Positives = 45/117 (38%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L Q + + + + Q + +K +
Sbjct 229 DILVNAATGSGKTLAYSIPIVQTL-FKRQINRLRCIIIVPTKLLINQVYTTLTKLTQGTS 287
Query 319 YRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V+ + +++ DI+I TP LV++L +I L +I DE
Sbjct 288 LIVSIAKLENSLKDEHKKLSNLEPDILITTPGRLVDHLNMKSIN-LKNLKFLIIDEA 343
>sp|A2QE29|SPB4_ASPNC ATP-dependent rRNA helicase spb4 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=spb4 PE=3 SV=2
Length=642
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/345 (15%), Positives = 103/345 (30%), Gaps = 28/345 (8%)
Query 412 VGVGDAKNTDEALDYICKLCASLDASV---IATVKHNLEELEQVVYK-PQKFFRKVESRI 467
VG T E I + SL A +T+K + ++ + K P + V +
Sbjct 88 VGAIIISPTRELASQIYNVLTSLLAFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLL 147
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQW-IVTVQKACMVFQMP 526
L + + L ++ + + ++ + +A + +
Sbjct 148 LGGSTTPAEDLSTFLKRSPNLLVSTPGRLLELLSSPHVHCPQSSFEMLVMDEADRLLDLG 207
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
KD I + L + + +K +G +
Sbjct 208 FKDTLQNILRRLPKQRRTGLFSASVSEAVDQIVRVGLRNPVKVMVKVKGTSGVQDKRTPA 267
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
+ + ++ P+++ P ++ + + L+ TI+FV T + VD L
Sbjct 268 SLQMTY-------LTAPPTHKFPAIKHILYSLE-----PAPQKTIMFVSTCSGVDYLSAI 315
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
+ F + + F S IL+ T VA G+DI
Sbjct 316 LPSIIGDDFQLIPLHGKHQANVREKNFN---------RFVNSHTPAILLTTDVASRGLDI 366
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRA--RGSKCFLLTSNAGVIE 749
++VI + + I GR R +L +
Sbjct 367 PSVDVVIQIDPPSDPKTFIHRCGRAGRAGRKGLSVVLLHPGREED 411
Score = 39.8 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 49/149 (33%), Gaps = 32/149 (21%)
Query 258 KNTIICAPTGCGKT---FVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
K+ ++ A TG GKT + ++ L++ + + + + Q +V +
Sbjct 52 KDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPLKKHHVGAIIISPTRELASQIYNVLTSLL 111
Query 315 ERHGYRVTGISGATAENVPVEQIV----------------------------ENNDIIIL 346
H + + + ++ Q + ++++
Sbjct 112 AFHPPSASTLKPSDDDDDAPRQKFPSSTLKVVPQLLLGGSTTPAEDLSTFLKRSPNLLVS 171
Query 347 TPQILVNNLKKGTIPSL-SIFTLMIFDEC 374
TP L+ L + S F +++ DE
Sbjct 172 TPGRLLELLSSPHVHCPQSSFEMLVMDEA 200
>sp|Q7S873|DBP7_NEUCR ATP-dependent RNA helicase dbp-7 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) OX=367110 GN=dbp-7 PE=3 SV=1
Length=814
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/202 (20%), Positives = 70/202 (35%), Gaps = 34/202 (17%)
Query 206 TSDIQIFYQEDPECQNLSENSCPP----SEVSDTNLYSPFKPRNYQ-----LELALPAMK 256
++ + + E+ +E + P S ++ L R Q LE+ P
Sbjct 113 SNPVPVTDFEELPQAEEAEPAQPSNAPLSAEAENFLSLGLSRRVSQHLATKLEMKAPTAI 172
Query 257 GKNTI-----------ICAPTGCGKTFVSLLICEHHL-----KKFPQGQKGKV------- 293
KNTI + A TG GKT LL H + + + KV
Sbjct 173 QKNTIPQLVKEDSDAFLQAETGSGKTLAYLLPIVHRILALSHNEDGTPKTTKVHRNSGLF 232
Query 294 -VFFANQIPVYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQIL 351
+ A + +Q V K T + G ++ +I + +I+I TP L
Sbjct 233 AIILAPTRELCKQIAVVLEKVLRCAPWLVCTTVIGGESKKSEKARIRKGVNILIATPGRL 292
Query 352 VNNLKKGTIPSLSIFTLMIFDE 373
++L + + ++ DE
Sbjct 293 TDHLDNTKVLDVGTVRWLVLDE 314
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/162 (20%), Positives = 52/162 (32%), Gaps = 29/162 (18%)
Query 610 KLEDLCFILQEEYHLNPE-TITILFVKTRALVDALKNWIEGN-----------------P 651
+L L +L+ + I+F+ VD ++ P
Sbjct 422 RLVTLIALLKSTFARKGSVMKAIIFISCADSVDYHFELLKSTTPRAEPEPKPEGEAPTKP 481
Query 652 KL---SFLKPGILTGRGKT------NQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
+ S + P + + P + L AF D +LI T ++
Sbjct 482 NIHIESTVAPATYITSPANPTVMLHKLHGSLAQPVRSATLKAFSECKDPAVLITTDISSR 541
Query 703 GIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLT 742
G+D+ LVI Y+ V + GR RA R K L
Sbjct 542 GLDVPAVELVIEYDPAFAVPDHVHRIGRTARAGRAGKAVLFL 583
>sp|Q5ASK8|SUB2_EMENI ATP-dependent RNA helicase sub2 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=sub2 PE=3 SV=2
Length=434
Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/362 (19%), Positives = 114/362 (31%), Gaps = 45/362 (12%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
+ +C A L+ V+ K L + V V S +L
Sbjct 83 SEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQ 142
Query 482 TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
++ R K L + ++ F Q + V F R+ +
Sbjct 143 IKNEYARFSKYLPD---VKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDK 199
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL-ESV 600
LR A ++ E +M D +D +D RA D+ + + ++ + +
Sbjct 200 KLSLRNV-KAFVLDECDKMLDQIDMRRDVQEIFRATPTDKQVMMFSATLSQDVRPICKKF 258
Query 601 SRDPSNE----NPKLE---------DLCFI-----LQEEYHLNPETITILFVKTRALVDA 642
R+P + KL L L E I+FVK+ +
Sbjct 259 MRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANE 318
Query 643 LKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 702
L + + +F + +GR FK + I +AT V
Sbjct 319 LDKLLR---ECNFPSIAVHSGR-----------------YKEFKEF-NKRICVATDVFGR 357
Query 703 GIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
GIDI + NL I Y+ + + GR G+K L S E EQ+ EK
Sbjct 358 GIDIERINLAINYDLPADADSYLHRVGRAGRFGTK-GLSISFVSTPEDEQVLKDIEKRFE 416
Query 763 DS 764
+
Sbjct 417 VA 418
Score = 50.2 bits (118), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/140 (26%), Positives = 54/140 (39%), Gaps = 13/140 (9%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q A+ + + A +G GKT V +L H L+ P V+ +
Sbjct 81 HPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECS--VLVMCHTRE 138
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND----IIILTPQILVNN 354
+ Q + + FSKY + G T +E ++ N D II+ TP L N
Sbjct 139 LAYQIKNEYARFSKYLPDV--KTAVFYGGTPIQKDIE-VLSNKDTFPNIIVGTPGRL-NA 194
Query 355 LKKGTIPSLSIFTLMIFDEC 374
L + SL + DEC
Sbjct 195 LVRDKKLSLRNVKAFVLDEC 214
>sp|Q6C835|DBP7_YARLI ATP-dependent RNA helicase DBP7 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP7 PE=3
SV=1
Length=799
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/332 (17%), Positives = 108/332 (33%), Gaps = 23/332 (7%)
Query 458 KFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQ 517
+ + ++RI ++A R + DL + + E + T+
Sbjct 347 EKKKSEKARIRKGVNILVATPGRLADHFDNTEALDLSQVRWVVLDEGDRLMELGFEETIT 406
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA 577
K + K + L ++ + K +
Sbjct 407 KILRTIEWKSVLRGENYLKDIPKNLKPLPS-RRVTVLCSATMKGGVTELGKSTLKDADWV 465
Query 578 GFDEIEQDL----TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE---TIT 630
D +E L + F Q ++ P+ +L L L+ + + E T
Sbjct 466 SNDSVEDALAETSVETFSAPSQLVQEWVVVPAKL--RLVTLLGALRGDILQSSEKTNTKV 523
Query 631 ILFVKTRALVD----ALKNWIEGNPKLSFLKPGIL----TGRGKTNQNTGMTLPAQKCIL 682
I+F+ VD L K+ K L + ++ A+ L
Sbjct 524 IVFLSCSDSVDFHFDVLSRDGSQINKMDTAKTAPLLLDDVSTSVYKLHGSLSQQARTATL 583
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFL 740
+F + +IL+ T VA G+D+ + VI Y+ ++ + GR RA + + L
Sbjct 584 ASFAKNSTPSILLCTDVASRGLDLPKITHVIEYDPPFSIEDHLHRVGRTARAGQDGRALL 643
Query 741 LT---SNAGVIEKEQINMYKEKMMNDSILRLQ 769
+ G +EK + + +K ++IL
Sbjct 644 FLLPGAEEGYVEKLKQSQQMKKTTYENILAAG 675
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 5/123 (4%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHL---KKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+ ++ + A TG GKT +L + + V + Q SV
Sbjct 270 RERDLFVQAQTGSGKTLAFVLPVLERIMSCDDVSRETGLFAVILTPTRELTTQIYSVLET 329
Query 313 YFER--HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+ + G + +I + +I++ TP L ++ LS ++
Sbjct 330 LCRKACPWIVPGIVIGGEKKKSEKARIRKGVNILVATPGRLADHFDNTEALDLSQVRWVV 389
Query 371 FDE 373
DE
Sbjct 390 LDE 392
>sp|A5DK47|DBP6_PICGU ATP-dependent RNA helicase DBP6 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381
/ JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=DBP6 PE=3
SV=2
Length=631
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/118 (23%), Positives = 48/118 (41%), Gaps = 2/118 (2%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
G + ++ A TG GKT + L+ + + + P+ Q K+ F+ +
Sbjct 239 GGDLLVNAATGSGKTLGYAIPIIESLRNRIVPRV-RAIVLVPTKPLISQVKATFAMLSKN 297
Query 317 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V + + N +++ DII+ TP LV +L G I L ++ DE
Sbjct 298 TNLSVVSLRSDISINDEAQRLQVVPDIIVSTPGRLVEHLTNGHIN-LKSLRYLVIDEA 354
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/120 (21%), Positives = 41/120 (34%), Gaps = 10/120 (8%)
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
+ IL F A+ +IL+ T + GIDIA VI Y+ + + GR RA
Sbjct 508 STRAKILKDF-ANQTVHILVVTDLIARGIDIATITNVINYDLPNSSRDYVHRVGRTARAN 566
Query 735 GSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ--------TWDEAVFREKILHIQTH 786
K + +E + ++ DEA + + +Q
Sbjct 567 QDGEAYTMCFGKGETKWFTQLVREVSRQTEVKDVEKGFRDLVSREDEAKYDTCLEELQRQ 626
>sp|A1CTZ2|DBP4_ASPCL ATP-dependent RNA helicase dbp4 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=dbp4 PE=3 SV=1
Length=823
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/130 (18%), Positives = 49/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ +L + + + +
Sbjct 76 QSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGALILSPTRELAI 135
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K H + + G ++ + +I++ TP ++ +L + +
Sbjct 136 QIFEVLRKIGRYHTFSAGLVIGG-KSLREEQERLGRMNILVCTPGRMLQHLDQTALFDTY 194
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 195 NLQMLVLDEA 204
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/409 (15%), Positives = 129/409 (32%), Gaps = 41/409 (10%)
Query 392 DQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQ 451
+ P + GLT+S A+ + K L A+ + + L
Sbjct 48 FESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAK----TGSGKTLAF 103
Query 452 VVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQ 507
+V + +R+ + + + A ++ T LA +I + L + + G +
Sbjct 104 LVPVLENLYRRQWA----EHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGK 159
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYL 567
+ + + ++ P + + ALF + D + +D +
Sbjct 160 SLREEQERLGRMNILVCTPGRMLQHLDQTALFDTYNLQMLVLDEADRILDLGFQQTVDAI 219
Query 568 KDFFSNVRAAGFDEIEQ-----DLTQRFEEKLQELESVSRDPSNENPKLED--------- 613
R Q DL + + + + KL+
Sbjct 220 VGHLPKERQTLLFSATQTKKVSDLARLSLRDPEYVAVHETASTATPAKLQQHYVIAPLPQ 279
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
IL N ++ T++F + K ++PGI Q G
Sbjct 280 KLDILWSFIRSNLKSKTMVF------FSSGKQVRFVYESFRHMQPGIPLMHLHGRQKQG- 332
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 732
+ I+ F + +L +T VA G+D + VI + + I GR R
Sbjct 333 ---GRLDIMTNFSQAKHC-VLFSTDVAARGLDFPAVDWVIQMDCPEDADTYIHRVGRTAR 388
Query 733 -ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
R + L + E+ + ++K + + ++ + ++++
Sbjct 389 YGRDGRAVLFLDPSE--EEGMLKRLEQKKVPIEKINIKANKQQSIKDQL 435
>sp|Q9JJY4|DDX20_MOUSE Probable ATP-dependent RNA helicase DDX20
OS=Mus musculus OX=10090 GN=Ddx20 PE=1 SV=2
Length=825
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/145 (18%), Positives = 47/145 (32%), Gaps = 14/145 (10%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
E+ LQE + P ++F + L + + G +
Sbjct 294 FEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSK------------GFPTECIS 341
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
M + + K +LI+T + GID + NLV+ + + + GR
Sbjct 342 GNMNQNQRLDAMAKLKQF-HCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGR 400
Query 731 GRARGSKCFLLTSNAGVIEKEQINM 755
R L + E+E + M
Sbjct 401 AG-RFGTLGLTVTYCCRGEEENMMM 424
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 48/134 (36%), Gaps = 5/134 (4%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P QL+ G + I+ A +G GKT V I L + +++ A
Sbjct 85 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL--ILENYSTQILILAPTRE 142
Query 302 VYEQQKSVFSKY-FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
+ Q SV + + G G T + ++ I + +P + ++ +
Sbjct 143 IAVQIHSVITAIGIKMEGLECHVFIGGT-PLSQDKTRLKKCHIAVGSPGRIKQLIELDYL 201
Query 361 PSLSIFTLMIFDEC 374
S L I DE
Sbjct 202 NPGS-IRLFILDEA 214
>sp|Q82WA9|UVRB_NITEU UvrABC system protein B OS=Nitrosomonas
europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC
14298) OX=228410 GN=uvrB PE=3 SV=1
Length=695
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/184 (13%), Positives = 64/184 (35%), Gaps = 19/184 (10%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++ T+ + + L ++ + ++ L ++ + + I+ +
Sbjct 452 RVLVTTLTKRMAEDLTDYFSDH----GIRVRYL--------HSDIDTVERVEIIRDLRL- 498
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLT 742
G ++L+ ++ EG+DI + +LV + + + +IQT GR R L
Sbjct 499 GKFDVLVGINLLREGLDIPEVSLVGILDADKEGFLRSERSLIQTMGRAARHVNGTVILYA 558
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
+ I+ + + + Q K + + ++ + + V
Sbjct 559 DKITNSMRRAIDETERRRNKQKLFNQQNNITPRGVNKRIKDLIDGVYDSENAAEHRKVAQ 618
Query 803 KENK 806
+ +
Sbjct 619 IQAR 622
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 26/75 (35%), Gaps = 12/75 (16%)
Query 248 LELALPAMKGKNTIICAPTGCGKTF-VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
+E + + + TG GKTF ++ +I G+ + A + Q
Sbjct 30 VEGIESGLSFQTLLGV--TGSGKTFTIANMIA-------RLGRPA--IIMAPNKTLAAQL 78
Query 307 KSVFSKYFERHGYRV 321
+ ++F +
Sbjct 79 YAEMREFFPENAVEY 93
>sp|B6EPV7|RAPA_ALISL RNA polymerase-associated protein RapA OS=Aliivibrio
salmonicida (strain LFI1238) OX=316275 GN=rapA
PE=3 SV=1
Length=969
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 69/481 (14%), Positives = 135/481 (28%), Gaps = 79/481 (16%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I G+ +V+ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLSGRAERVLIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 323 GISGATAENVPVEQIVENNDIIILTPQILV---NNLKKGTIPSLSIF----TLMIFDECH 375
S A +EN T Q+++ + +++ + L++ DE H
Sbjct 236 IESYADSENP------------FDTAQLVLCSLDFIRRSKRRFEQVVEADWDLLVVDEAH 283
Query 376 N-----TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKL 430
+ T Y +I + V+ LTA+ + +L
Sbjct 284 HLEWNQTKPSRAYQVI---------EAIAEETAGVLLLTATP------EQLGHESHFARL 328
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC 490
LD +EE Q DK R E L+++
Sbjct 329 -RLLDPDRFYDYDAFVEEERQYQPVADAVTAL---MSGDKLSNDAKN--RIAELLSEQDV 382
Query 491 KDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 550
+ L + + E + Q +V K +L
Sbjct 383 EPLFRIIESDGSEEQQSQVRQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPM-- 440
Query 551 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPK 610
AL M+ A + RA E+ + + S +
Sbjct 441 ALPPQYATSMRVATMMGGRMSNEARAMKMLYPEEIFQEFEGD------------SATWWQ 488
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+ L E N ++ + L+ + ++ + +
Sbjct 489 FDPRVNWLLELLKENRNEKVLIIASRASTALQLEQALRER---EGIRGTVF--------H 537
Query 671 TGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
GM++ + F + G +LI + + EG + N +++++ N + Q G
Sbjct 538 EGMSIIERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIG 597
Query 730 R 730
R
Sbjct 598 R 598
>sp|Q4P7M1|DBP9_USTMA ATP-dependent RNA helicase DBP9 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP9 PE=3 SV=1
Length=686
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL--------KKFPQGQKGKVVFFAN 298
Q + A+ GK+ + A TG GKT L + K Q + +
Sbjct 86 QQKAIPLALAGKDILARARTGSGKTLAYGLPLLQKVLDAKSAVAKSDANHQLTRALVLVP 145
Query 299 QIPVYEQQKSVFSKYFERHG--YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ EQ S E R+ ++ +E V + E D++I TP +N L+
Sbjct 146 TRELAEQVFRHLSVVIEYVRDDIRLVNVAREASEKVQRLLLSEKPDVVIATPSKALNYLQ 205
Query 357 KGTIPSLSIFTLMIFDEC 374
++ S + DE
Sbjct 206 NASLDLKSGMESLAIDEA 223
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/41 (27%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 740
G+D + VI ++ +V I GR R S L
Sbjct 449 SRGVDFINVSCVINFDLPTSVDSYIHRVGRTARGGASGTAL 489
>sp|Q6C193|SPB4_YARLI ATP-dependent rRNA helicase SPB4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=SPB4
PE=3 SV=1
Length=626
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/95 (18%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + IL+ ++ +G IL+ T +A G+DI + +LV+ + + G
Sbjct 317 HGKLPSSTRIKILNKYQKTGAQAILMTTDIAARGLDIPEVDLVVQLDPPSDADTFQHRCG 376
Query 730 RGRA--RGSKCFLLTSNAGVIEKEQINMYKEKMMN 762
R R + +L E + ++ +
Sbjct 377 RAGRAGRQGQAIVLLHKGREEEYVDLMRVRKVKLR 411
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/152 (20%), Positives = 50/152 (33%), Gaps = 36/152 (24%)
Query 257 GKNTIICAPTGCGKTFVSLLI--CEHHLKKFPQGQ--KGKV--VFFANQIPVYEQQKSVF 310
K+ I+ A TG GKT ++ L+ + L +G G+V V + + Q V
Sbjct 40 NKDVIVEAVTGSGKT-IAFLVPLIQRMLNLLKEGPAVSGRVYSVVVSPTRELARQTYEVL 98
Query 311 SKYFE--------------------------RHGYRVTGISGATAENVPV-EQIVENN-D 342
E R I G + + + +
Sbjct 99 QSILEMGCPEADASDKITLEKKKKGKAAPTMPKKIRGQLIMGGDLPSHMDLKNFLRDKPQ 158
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
II+ TP L+ L+ I S F ++ DE
Sbjct 159 IIVATPGRLLELLRAPQI-KTSAFDSLVLDEA 189
>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS) OX=107806
GN=mfd PE=3 SV=1
Length=812
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/351 (16%), Positives = 106/351 (30%), Gaps = 48/351 (14%)
Query 213 YQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTF 272
++++ E +L N C SD N F ++ + + +IC G GKT
Sbjct 248 FKKNIEKYDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIPMDR------LICGDVGFGKTE 301
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENV 332
+++ K +V + +Q F F + +S
Sbjct 302 IAM-----RASFLAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVNINILSR-FQTQK 355
Query 333 PVEQIVE-----NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 387
+ I + +III T ++L N++ L+I DE H H I+
Sbjct 356 EQDLIFKHTKNGRINIIIGTHKLLFKNIEWC------SLGLLIIDEEHRFGVSH--KEII 407
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
++ LTA+ + + A+ I D S+IA
Sbjct 408 KKIY---------SNIDILTLTATPI---PRTLNMAMTGIK------DLSIIAKPPAQRL 449
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQ 507
++ + + + I + + + I E LS +
Sbjct 450 AIKTFIQEYSPIL--IRKTILREISRGGQVYY--IYNKVQNIMNIAERLSILIPEASIKI 505
Query 508 KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ Q K M + + IC + + + N +I +
Sbjct 506 GHGQMKNIDLKKVMN-EFYNNKFNVLICTTIIESGVDIARANTIIIENSDH 555
Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 54/292 (18%), Positives = 100/292 (34%), Gaps = 31/292 (11%)
Query 479 MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ ++ R N++ + F TQK + I K + L
Sbjct 328 QQHYKNFKIRFSNWPVNINILSR--FQTQKEQDLIFKHTK-------NGRINIIIGTHKL 378
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK-LQEL 597
+I EH + +K +SN+ T +++L
Sbjct 379 LFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDL 438
Query 598 ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTR-----ALVDALKNWIEGNPK 652
+++ P+ +EY TIL +R + + ++N + +
Sbjct 439 SIIAKPPAQ-----RLAIKTFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAER 493
Query 653 LSFLKP--GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
LS L P I G G+ K +++ F + N+LI T++ + G+DIA+ N
Sbjct 494 LSILIPEASIKIGHGQMKNIDL------KKVMNEF-YNNKFNVLICTTIIESGVDIARAN 546
Query 711 LVILYEYVG-NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
+I+ + ++ Q RGR GR+ LL N E +
Sbjct 547 TIIIENSDHFGLSQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAI 598
>sp|P08956|T1RK_ECOLI Type I restriction enzyme EcoKI endonuclease
subunit OS=Escherichia coli (strain K12) OX=83333 GN=hsdR
PE=1 SV=3
Length=1170
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/225 (16%), Positives = 75/225 (33%), Gaps = 51/225 (23%)
Query 215 EDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMK-----GKNTIICAPTGCG 269
+P+ QN +D S R YQ + K + ++ TG G
Sbjct 425 SEPQKQN--------QWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTG 476
Query 270 KTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY-----FERHGYRVTGI 324
KT ++ + ++ +++F ++ + EQ F + + G+
Sbjct 477 KTRTAIAMMFRLIQSQRFK---RILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGL 533
Query 325 SGATAENVPVEQIVENNDIIILTPQILV-NNLKKGTIPSLSIFTLMIFDECH-------- 375
+ E+ + I + T Q LV L+ ++ + ++ DE H
Sbjct 534 TDKFPED--------STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKE 585
Query 376 --------NTSKQH--PYNMIMFNYLDQKLGGSSGPL---PQVIG 407
+ + Y I+ ++ K+ ++ P Q+ G
Sbjct 586 QTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFG 630
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL-EDLCFILQEEYHLNPET 628
+ S + ++ E Q+ E + P +C L
Sbjct 666 YLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQ 725
Query 629 ITILFVKTRALVDALKNWI-----EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
T++F T A D + + + P+L +TG + T+ +
Sbjct 726 KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTM------IT 779
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA 733
F NI++ + G+DI ++ V + I Q +GR
Sbjct 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATR 829
>sp|Q9VNV3|DDX1_DROME ATP-dependent RNA helicase Ddx1 OS=Drosophila
melanogaster OX=7227 GN=Ddx1 PE=2 SV=1
Length=727
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 89/298 (30%), Gaps = 36/298 (12%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
LE+++ + D+ ++ Q + L R+ K + ++ R
Sbjct 350 LEEMINSGLVLLTHCRFFVLDEADALLKQGYTE---LIDRLHKQIPKITSDGRRL----- 401
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLK 568
+V F++ E F L K DA+ + H + +
Sbjct 402 ---QMVVCSATLHAFEVKKMAERLM----HFPTWVDL-KGEDAVPETVHHVVCLVDPQMD 453
Query 569 DFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 628
+ ++R + D R + + + K E + +
Sbjct 454 TTWQSLRQPIGTDGVHD---RDNVHPGNHSKETLSQAVKLLKGEYCVHAIDKHNMD---- 506
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
I+F +T+ D L+ ++ L G +K L+ FK
Sbjct 507 RAIIFCRTKQDCDNLERFLRQRGG-KHYSCVCLHG--------DRKPQERKENLEMFKRQ 557
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTS 743
LI T VA G+DI +I N + I GR G L+ +
Sbjct 558 -QVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614
Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 6/145 (4%)
Query 286 PQGQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND 342
P + + + EQ Q F + R + G Q+++
Sbjct 282 PAPNAPQAIIMEPSRELAEQTYNQIEKFKYHLSNPEVRSLLLIGGVRLEEQKAQLMQGTH 341
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG-GSSGP 401
I++ TP L + G + L+ + DE + + Y ++ Q S G
Sbjct 342 IVVGTPGRLEEMINSGLVL-LTHCRFFVLDEA-DALLKQGYTELIDRLHKQIPKITSDGR 399
Query 402 LPQVIGLTASVGVGDAKNTDEALDY 426
Q++ +A++ + K E L +
Sbjct 400 RLQMVVCSATLHAFEVKKMAERLMH 424
>sp|Q6BPT8|DBP6_DEBHA ATP-dependent RNA helicase DBP6 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP6 PE=3 SV=2
Length=576
Score = 65.6 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/128 (22%), Positives = 48/128 (38%), Gaps = 11/128 (9%)
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+T T + IL F NIL+AT + GIDI VI Y+ + + +
Sbjct 445 NSTNNTTSVRSKILKDFSKQ-TINILVATDLIARGIDILSITDVINYDLPNSSREYVHRV 503
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYK---------EKMMNDSILRLQTWDEAVFRE 778
GR RA K + E++ D+ ++ DE++++E
Sbjct 504 GRTARANQEGFAYNFCFGKGEAKWFKKLMAQVGRSEKNIEELELDTKQLIEDNDESMYKE 563
Query 779 KILHIQTH 786
+ +Q
Sbjct 564 SLDELQQQ 571
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L+ + + + P+ Q K+ ++ +
Sbjct 180 DLLVNASTGSGKTLAYSIPIIESLQTVKVPRV-RAIILVPTKPLINQVKTTLNQLSKGTN 238
Query 319 YRVTGISGATA-ENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + + + ++ DII+ TP LV++L G I SL ++ DE
Sbjct 239 LSIVSLKNDLSIKEEGIKLQTNEPDIIVSTPGRLVDHLTNGYI-SLKNLQYLVIDEA 294
>sp|Q0UHM7|DBP7_PHANO ATP-dependent RNA helicase DBP7 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
OX=321614 GN=DBP7 PE=3 SV=1
Length=831
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/197 (17%), Positives = 63/197 (32%), Gaps = 16/197 (8%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQ 726
+ + + L F + D +LIAT VA G+D+ +LV+ ++ + + I
Sbjct 562 HGSLQQSLRTSTLAHFTKNNDAAVLIATDVASRGLDLPNVDLVVEFDPAFAREDHLHRIG 621
Query 727 TRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV----------F 776
R G C L + + ++ + Q D+ +
Sbjct 622 RTARAGRDGRACIFLMPGPEEGYVDILKTDRKDNEAGITITRQDADDILTRGLVTSGIAT 681
Query 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRV---IEECHYTV 833
+ + I + + P + ++ +A A + AD R I+ H
Sbjct 682 KNAYMDIAQDLQLNVERWALASPARLESARRAFQSHIRAYATHVADERKYFDIKSLHLGH 741
Query 834 LGDAFKECFVSRPHPKP 850
L AF P
Sbjct 742 LAKAFALRERPSGMKAP 758
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 46/126 (37%), Gaps = 14/126 (11%)
Query 262 ICAPTGCGKTFVSLLICEHHL-KKFPQGQKGK------------VVFFANQIPVYEQQKS 308
I A TG GKT LL L + +K K + A + +Q
Sbjct 229 IQAETGSGKTLAYLLPIVQRLMELSANMKKHKDDDAVQRNSGLFAIIMAPTRELSKQIAL 288
Query 309 VFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
V K H T + G + ++ + +I++ TP L ++L+ +S
Sbjct 289 VLEKLLGCAHWLVATTVIGGEKKKSEKARLRKGINILVATPGRLADHLEHTEALDVSNVR 348
Query 368 LMIFDE 373
++ DE
Sbjct 349 WLVLDE 354
>sp|B1KJA5|RAPA_SHEWM RNA polymerase-associated protein RapA OS=Shewanella
woodyi (strain ATCC 51908 / MS32) OX=392500 GN=rapA
PE=3 SV=1
Length=968
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 79/539 (15%), Positives = 168/539 (31%), Gaps = 60/539 (11%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + Q + F
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILVIVPD-TLRHQWLVEMLRRFNLKFSVFDEDRC 234
Query 327 ATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYN 384
A ++I + + L+ ++ + + LM+ DE H+ ++ P
Sbjct 235 VEAYADSDNPFYTE-QLVICSLE-LLRKKRRLDQALAADWDLMVVDEAHHLEWTEDAP-- 290
Query 385 MIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKH 444
+ + + S +P V+ LTA+ D +
Sbjct 291 ----SRAYRIVEALSEEIPGVLLLTATP----------------------DQLGHQSHFA 324
Query 445 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREF 504
L L+ + + F K E+ +D A + E L++ I +L+ ++
Sbjct 325 RLRLLDPDRFYDYEAFLKEETNYADIAST--ADALAGNEPLSQEIIDNLKTQLAEKDITA 382
Query 505 GTQ--KYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD 562
T + V Q+A + D + + L+ + K I +++ +
Sbjct 383 ATDIIQATDADVDQQQAARDALLQDLLDRHGTGRVLYRNSRASVKGFPTRIFNQYPQKMP 442
Query 563 ALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEY 622
A Y+ G + + Q +++ S K + L +
Sbjct 443 A-QYVTAARVGAMMNGHLDTAGKVKQALSP--EKIYQEFESSSASWWKFDPRVDWLIDFL 499
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
N ++ +L+ + G T + GM++ +
Sbjct 500 KENRREKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSIIERDKAG 548
Query 683 DAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLL 741
F + +G LI + + EG + + +IL++ N + Q GR G
Sbjct 549 AYFAQETGGAQALICSEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGRLDRIGQN---- 604
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPV 800
++ + + +E +M L +++ IL + E + + K V
Sbjct 605 -NDVSIHVPYLEDTAQESLMQWYHKGLNAFEQTCPSGHILFNEFSESLLNVLISQDKEV 662
>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781
/ NBRC 1676 / NRRL YB-4239) OX=379508 GN=DBP10 PE=3 SV=1
Length=948
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/270 (18%), Positives = 92/270 (34%), Gaps = 33/270 (12%)
Query 484 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQM-----PDKDEESRICKAL 538
A+++ + L L + + + +V KA + + D + A
Sbjct 280 GFAEQLNELLLALPSNRQSLLFSATLPRSLVEFAKAGLTNPVLVRLDADSKLSENLQMAY 339
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
F + R+ N I+ E +M + + + E++ + + ++ +
Sbjct 340 FTTKRNEREANLLYILQEVIKMPLGTPEEVKKLAAMDKRSIESDEENEEAKEQNNGKKRK 399
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
+ + K L E TI+FV T+ V+ + + ++ L
Sbjct 400 YKFKKERMPSAK------------ELPSEKSTIIFVPTKHHVEYVTSLLKDAGYLVSYIY 447
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G L + NQ L F+ G IL+ T VA GIDI VI +
Sbjct 448 GTLDQHARKNQ------------LYLFRI-GLTKILVVTDVAARGIDIPVLANVINFTLP 494
Query 719 GN---VIKMIQTRGRGRARGSKCFLLTSNA 745
G+ I + R +G ++ S+
Sbjct 495 GSSKIFIHRVGRTARAGNKGWAYSIVNSSE 524
Score = 56.7 bits (135), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 2/119 (2%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
++ + A TG GKT +L LK + V + + Q ++
Sbjct 157 DNRDVVGMARTGSGKTAAFVLPLIEKLK-LRSPSGVRAVILSPSRELALQTYKQVKEFSH 215
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ + G + +++ DII+ TP ++ LK L ++FDE
Sbjct 216 GTNLQSIVLIGGDSLEEDFGKMMTKPDIIVCTPGRFLH-LKVEMQYDLMSVQYIVFDEA 273
>sp|Q54ZI9|DDX20_DICDI Probable ATP-dependent RNA helicase ddx20
OS=Dictyostelium discoideum OX=44689 GN=ddx20 PE=3 SV=2
Length=849
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 42/132 (32%), Gaps = 13/132 (10%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
++ C L I+F + + L + G
Sbjct 352 FQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNRE------------GWPTAFIA 399
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
G + + A K S + IL++T + GID+ + NLVI + + GR
Sbjct 400 GGQNQKDRLSTMSALK-SFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGR 458
Query 731 GRARGSKCFLLT 742
G+ +T
Sbjct 459 TGRFGTYGVSIT 470
>sp|Q46IE1|UVRB_PROMT UvrABC system protein B OS=Prochlorococcus
marinus (strain NATL2A) OX=59920 GN=uvrB PE=3 SV=1
Length=678
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/363 (15%), Positives = 120/363 (33%), Gaps = 58/363 (16%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L+ + P K F + R+ K I +L E L + K LE Q + +
Sbjct 236 LDSINIYPAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQE-GKLLEAQRLEQRTIYDLEM 294
Query 509 YEQ--WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN--------DALIISEHA 558
++ + V+ + F L A+ + A
Sbjct 295 LKEVGYCNGVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQA 354
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQ-----------------DLTQRFEEKLQELE--- 598
R K +D+ S +IE +L+Q + ++++
Sbjct 355 RKKVLIDHGFRLPSAADNRPLKDIEFWNKAKQTVFISATPGDWELSQSTKNIVEQVIRPT 414
Query 599 ---SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+ + +++DL F +++ N ++ T+ + + L +++ N
Sbjct 415 GVLDPLVEVRPTHGQVDDLLFEIRKRASKNQ--RILVTTLTKRMAEDLTDYLSENK---- 468
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
++ L ++ + + I+ + G++++L+ ++ EG+D+ + +LV++
Sbjct 469 IRVRYL--------HSEIHSIERIEIIQDLRL-GEYDVLVGVNLLREGLDLPEVSLVVIL 519
Query 716 EYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
+ +IQT GR R L A + E I +
Sbjct 520 DADKEGFLRAQRSLIQTIGRAARHVEG---LALLYADKMTDSMAKAISETERRREIQNIY 576
Query 770 TWD 772
+
Sbjct 577 NIE 579
>sp|A2C5B3|UVRB_PROM1 UvrABC system protein B OS=Prochlorococcus
marinus (strain NATL1A) OX=167555 GN=uvrB PE=3 SV=1
Length=678
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/363 (15%), Positives = 120/363 (33%), Gaps = 58/363 (16%)
Query 449 LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQK 508
L+ + P K F + R+ K I +L E L + K LE Q + +
Sbjct 236 LDSINIYPAKHFVTPKDRLDSAIKAIKKELKDRLEFLNQE-GKLLEAQRLEQRTIYDLEM 294
Query 509 YEQ--WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN--------DALIISEHA 558
++ + V+ + F L A+ + A
Sbjct 295 LKEVGYCNGVENYARHLSGREPGSAPECLIDYFPKDWLLLIDESHVTCPQLRAMYNGDQA 354
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQ-----------------DLTQRFEEKLQELE--- 598
R K +D+ S +IE +L+Q + ++++
Sbjct 355 RKKVLIDHGFRLPSAADNRPLKDIEFWNKAKQTVFISATPGDWELSQSTKNIVEQVIRPT 414
Query 599 ---SVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+ + +++DL F +++ N ++ T+ + + L +++ N
Sbjct 415 GVLDPLVEVRPTHGQVDDLLFEIRKRASKNQ--RILVTTLTKRMAEDLTDYLSENK---- 468
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILY 715
++ L ++ + + I+ + G++++L+ ++ EG+D+ + +LV++
Sbjct 469 IRVRYL--------HSEIHSIERIEIIQDLRL-GEYDVLVGVNLLREGLDLPEVSLVVIL 519
Query 716 EYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 769
+ +IQT GR R L A + E I +
Sbjct 520 DADKEGFLRAQRSLIQTIGRAARHVEG---LALLYADKMTDSMAKAISETERRREIQNIY 576
Query 770 TWD 772
+
Sbjct 577 NIE 579
>sp|Q9SB89|RH27_ARATH DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis
thaliana OX=3702 GN=RH27 PE=2 SV=2
Length=633
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/131 (20%), Positives = 52/131 (40%), Gaps = 4/131 (3%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVY 303
Q + P M G++ + A TG GKT + + + +K P+ G V+ +
Sbjct 181 QAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTG-VLVICPTRELA 239
Query 304 EQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL 363
Q V + + H V + G E + + ++++ TP L+++L+
Sbjct 240 IQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIF 299
Query 364 SIFTLMIFDEC 374
++ DE
Sbjct 300 KNLKFLVMDEA 310
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/130 (21%), Positives = 44/130 (34%), Gaps = 14/130 (11%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
P L F+L + ++F T ++K L RG
Sbjct 382 PSAMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELF------RYIKFDCLEIRG--- 432
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
G+ + F + IL+ T+VA G+D + ++ Y+ N I
Sbjct 433 ---GIDQNKRTPTFLQF-IKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRV 488
Query 729 GR-GRARGSK 737
GR R G+K
Sbjct 489 GRTARGEGAK 498
>sp|P0CR08|SPB4_CRYNJ ATP-dependent rRNA helicase SPB4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21
/ ATCC MYA-565) OX=214684 GN=SPB4 PE=3 SV=1
Length=748
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 51/147 (35%), Gaps = 14/147 (10%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L +L E + + I++ T A VD + P LS G
Sbjct 294 EKTLQLIRLLLCESTKHERSKFIVYFSTCAAVDYFYRILSRLPSLSKFHLTSFHG----- 348
Query 669 QNTGMTLPAQKCILDAFKASGDHNI----LIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ ++ L F + ++ L+ T VA G+D ++VI Y+ +
Sbjct 349 ---ELPPKIRETALSTFTSHPSSHLSPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTF 405
Query 725 IQTRGR-GRA-RGSKCFLLTSNAGVIE 749
GR RA R K +L +
Sbjct 406 SHRAGRTARAGRRGKAVVLLGKGREED 432
Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 30/162 (19%), Positives = 54/162 (33%), Gaps = 40/162 (25%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKV--VFFANQIPVYEQQKSV 309
A+K ++ ++ A TG GKT + L + + +KG++ + A + Q +V
Sbjct 48 RAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELATQIHAV 107
Query 310 FSKYF---------------ERHGYRVTGISGATAENVPVEQIV--------------EN 340
F + E H S + + P + + E
Sbjct 108 FHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGTPTPYET 167
Query 341 ND-----IIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
I+I TP L L I +S +++ DE
Sbjct 168 FQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEA 209
>sp|P0CR09|SPB4_CRYNB ATP-dependent rRNA helicase SPB4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
OX=283643 GN=SPB4 PE=3 SV=1
Length=748
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 51/147 (35%), Gaps = 14/147 (10%)
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
K L +L E + + I++ T A VD + P LS G
Sbjct 294 EKTLQLIRLLLCESTKHERSKFIVYFSTCAAVDYFYRILSRLPSLSKFHLTSFHG----- 348
Query 669 QNTGMTLPAQKCILDAFKASGDHNI----LIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ ++ L F + ++ L+ T VA G+D ++VI Y+ +
Sbjct 349 ---ELPPKIRETALSTFTSHPSSHLSPAVLLCTDVAARGVDFLDIDVVIQYDAPTDPKTF 405
Query 725 IQTRGR-GRA-RGSKCFLLTSNAGVIE 749
GR RA R K +L +
Sbjct 406 SHRAGRTARAGRRGKAVVLLGKGREED 432
Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 30/162 (19%), Positives = 54/162 (33%), Gaps = 40/162 (25%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG-QKGKV--VFFANQIPVYEQQKSV 309
A+K ++ ++ A TG GKT + L + + +KG++ + A + Q +V
Sbjct 48 RAVKNQDCVVEAVTGSGKTLAFTIPVLERLSRREEPYKKGEIAAIVVAPTRELATQIHAV 107
Query 310 FSKYF---------------ERHGYRVTGISGATAENVPVEQIV--------------EN 340
F + E H S + + P + + E
Sbjct 108 FHHFLSSLIPPESEEETGDVEAHAPPFASSSRSPSPQTPDKPLFPLPMLVTSGTPTPYET 167
Query 341 ND-----IIILTPQILVNNLKKG---TIPSLSIFTLMIFDEC 374
I+I TP L L I +S +++ DE
Sbjct 168 FQSTHPSILIGTPGRLAAFLLNPRGLAIVRVSELDVLVLDEA 209
>sp|Q09916|HAS1_SCHPO ATP-dependent RNA helicase has1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=has1
PE=1 SV=1
Length=578
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L N + I+F+ + A V + + +++ +L GK
Sbjct 326 LLFSFLKRNLKKKVIVFMSSCASVKYMAELL------NYIDLPVLDLHGK--------QK 371
Query 677 AQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 734
Q+ F+ + + IL+ T+VA G+DI + ++ Y+ + I GR R
Sbjct 372 QQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGT 431
Query 735 GSK 737
Sbjct 432 KGT 434
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query 255 MKGKNTIICAPTGCGKTF---VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ G++ + A TG GKT + + + LK P+ G V+ + + Q V
Sbjct 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTG-VIIISPTRELALQIFGVAK 182
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLM 369
+ + H + G +++V+ ++++ TP L+++L+ G + +
Sbjct 183 ELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFR--NLRSL 240
Query 370 IFDEC 374
+ DE
Sbjct 241 VIDEA 245
>sp|Q4KH47|RAPA_PSEF5 RNA polymerase-associated protein RapA OS=Pseudomonas
fluorescens (strain ATCC BAA-477 / NRRL B-23932
/ Pf-5) OX=220664 GN=rapA PE=3 SV=1
Length=949
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 74/536 (14%), Positives = 159/536 (30%), Gaps = 69/536 (13%)
Query 242 KPRNYQLELALPAMK--GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
+P +QL +A ++ G GKT + L+ L G+ +V+
Sbjct 153 QPIAHQLHIAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQL---LSGRASRVLILVP- 208
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q + F +V E+ + ++ + LV++ K
Sbjct 209 ENLQHQWLVEMRRRFN---LQVALFDEERFIESDASNPFEDTQLALVALEWLVDDEKAQD 265
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKN 419
+ + LM+ DE H+ + + Y + + +P V+ LTA+ +
Sbjct 266 ALFAAGWDLMVVDEAHHLVWHE--DQVSPEY--ALVEQLAETIPGVLLLTATPEQLGQDS 321
Query 420 TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLM 479
L +L +A + E V Q+ K + K I L
Sbjct 322 HFARL----RLLDPNRFHDLAAFRAESENYRPVAEAVQELMDK-GRLSPEAHKTIHGFLG 376
Query 480 RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+ E+L + S RE + ++ V P+ + L
Sbjct 377 NEGEALLAAVNDGDSEASARLVRELLDRHGTGRVLFRNTRAAVQGFPE--------RKLH 428
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
Y L + EHA + + + + +
Sbjct 429 AYPLPCPDEYLELPLGEHAELYPEVSF-----------------------------QAQP 459
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
D K + L ++ + T ++ L++ +
Sbjct 460 DVSDDEQRWWKFDPRVEWLIDQLKMLKRTKVLVICAHAETAMDLEDALR----------- 508
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGIDIAQCNLVILYEYV 718
+ +G T + GM + + F +LI + + EG + + ++L++
Sbjct 509 VRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVLFDLP 568
Query 719 GNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + Q GR G K + + Q +++ ++++
Sbjct 569 SHPDLLEQRIGRLDRIGQKHVIELHVPYLETSPQERLFQW--YHEALNAFLNTCPT 622
>sp|Q9H8H2|DDX31_HUMAN Probable ATP-dependent RNA helicase DDX31
OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2
Length=851
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 61/390 (16%), Positives = 128/390 (33%), Gaps = 30/390 (8%)
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQV--VYKPQKFFRKVESRISDKFKYI 474
++ I + ++ T + L+ + V + KP + +K K
Sbjct 290 VQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSE 349
Query 475 IAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
A+L + L + ++++ +N F +W+V + ++ +KD +
Sbjct 350 KARLRKGINILISTPGRLVDHIKSTKNIHFSRL---RWLVFDEADRILDLGFEKDITVIL 406
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDY------LKDFFSNVRAAGFDEIEQDLTQ 588
A + R+ D + + D + +++
Sbjct 407 NAVNAECQKRQNVLLSATLTEGVTRLADISLHDPVSISVLDKSHDQLNPKDKAVQEVCPP 466
Query 589 RFEEKLQEL---ESVSRDPSNENPKLEDLC---FILQEEYHLNPETITILF-----VKTR 637
+KL ES+ + + KL +C FILQ+ + + + F V+
Sbjct 467 PAGDKLDSFAIPESLKQHVTVVPSKLRLVCLAAFILQKCKFEEDQKMVVFFSSCELVEFH 526
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 697
+ S P + GM + + F S +L+ T
Sbjct 527 YSLFLQTLLSSSGAPASGQLPSASMRLKFLRLHGGMEQEERTAVFQEFSHS-RRGVLLCT 585
Query 698 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKEQIN 754
VA G+D+ Q ++ Y + + I GR R GS +L + E E +N
Sbjct 586 DVAARGLDLPQVTWIVQYNAPSSPAEYIHRIGRTARIGCHGSSLLILAPS----EAEYVN 641
Query 755 MYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
+N S ++++ + R+ +
Sbjct 642 SLASHKINVSEIKMEDILCVLTRDDCFKGK 671
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKF----PQGQKGKVVFFANQIPVYEQQKSVF 310
++G++ ++ + TG GKT + L+ + + + Q
Sbjct 266 LEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPYALVLVPTRELALQSFDTV 325
Query 311 SKYFERHGYRVTG-ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
K + + V G + G ++ + +I+I TP LV+++K S +
Sbjct 326 QKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWL 385
Query 370 IFDEC 374
+FDE
Sbjct 386 VFDEA 390
>sp|Q0I5G1|RAPA_HISS1 RNA polymerase-associated protein RapA OS=Histophilus
somni (strain 129Pt) OX=205914 GN=rapA PE=3 SV=1
Length=966
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/474 (13%), Positives = 143/474 (30%), Gaps = 67/474 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I + L + +V+ + Q F+ +F
Sbjct 179 GLGKTIEAGMILQQQL---LAEKVQRVLILVP-ETLQHQWLVEMLRRFNLHFSLFDEERC 234
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH- 381
++V V N +II LV K+ F L+I DE H+ +
Sbjct 235 ADFDNPEDHVEANPFVAEN-LIICALDWLVQQPKRAKQALAGEFDLLIVDEAHHLTWSED 293
Query 382 ----PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDAS 437
Y ++M S +P V+ LTA+ ++ + +L LD +
Sbjct 294 SPSIAYELVMQ---------LSAVIPAVLLLTATPEQLGQQS------HFARL-HLLDPN 337
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS 497
+ + +E +Q Q + V+S +S+ + Q + I L+ ++
Sbjct 338 RFYSYRAFEKEQQQY----QPVAKAVQSLLSEHILTVEEQNHLAELLSEQDIEPMLKVIN 393
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
+ E ++ + + + + R Y+ +
Sbjct 394 SQADTE------QKQVARGELMSNLIDRHGTGRLLFRNTRQGVQGFPHRIYHQIKLDLPT 447
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
+ + ++ EQ + + + +
Sbjct 448 QYQNAI--NVLNMLGEIKDPELFYPEQIFQKM-------------NADATWWRFDPRVDW 492
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E ++ + L+ + + ++ + + M++
Sbjct 493 LINLVKSLREEKILVICQDAITAIQLEQALR---EKEGIRSAVF--------HENMSIIE 541
Query 678 QKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + +L+++S+ EG + ++L+ N + Q GR
Sbjct 542 RDRASAYFAQQEEGAQVLLSSSIGSEGRNFQFACHLVLFHLPNNPDLLEQCIGR 595
>sp|Q49VV6|UVRB_STAS1 UvrABC system protein B OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM
20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=uvrB PE=3
SV=1
Length=660
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/376 (14%), Positives = 132/376 (35%), Gaps = 33/376 (9%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG----TQKYEQW 512
++ + RI ++ + +A+L + + L + + N RE G + Y
Sbjct 254 EEKMKSAIQRIENELEERLAELNAENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVH 313
Query 513 IVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 572
+ + + D + + + + + + AR + +D+ S
Sbjct 314 LTLRPMGSTPYTLLDYFGDDWLVMIDESHVT--LPQIRGMYNGDRARKQVLVDHGFRLPS 371
Query 573 NVRAA--GFDEIEQDLTQRF-----------EEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ F+E E+ Q E + ++ + R +PK+E +
Sbjct 372 ALDNRPLKFEEFEEKTKQLVYVSATPGPFELEHTDEMVQQIIRPTGLLDPKIE-VRPTEN 430
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ L E + R LV L + + + + GI ++ + +
Sbjct 431 QIDDLLGEIQDRIDRNERVLVTTLTKKMSEDLTIYLKEAGIKV----NYLHSEIKTLERI 486
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRA 733
I+ + G +++++ ++ EGIDI + +LV++ + + ++QT GR R
Sbjct 487 EIIRDLRM-GTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSQRSLVQTIGRAARN 545
Query 734 RGSKCFLLTSNAGVIEKEQINM-YKEKMMNDSILRLQTWDEAVFREKILH-IQTHEKFIR 791
+ + + ++ + + + ++ +KI I +
Sbjct 546 SRGEVIMYGDKITDSMRYALDETERRRTIQEAYNEKHNITPTTINKKIHDVISATVENDE 605
Query 792 DSQEKPKPVPDKENKK 807
++++ VP K KK
Sbjct 606 TNEQQQTEVPKKMTKK 621
>sp|Q6LZA2|UVRB_METMP UvrABC system protein B OS=Methanococcus
maripaludis (strain S2 / LL) OX=267377 GN=uvrB PE=3 SV=1
Length=646
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 104/645 (16%), Positives = 208/645 (32%), Gaps = 104/645 (16%)
Query 231 EVSDTNLYSPFKPRNYQLE--------LALPAMKGKNTIICAPTGCGKTFVSLLICEHHL 282
D L + FKP+ QLE L K K T++ TG GKTF + +
Sbjct 2 SSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGV-TGSGKTF----TIANVI 56
Query 283 KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTG------------------I 324
+K + + A+ + Q + F ++F + I
Sbjct 57 EKVQKP----TLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYI 112
Query 325 SGATAENVPVEQ--------IVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
N +EQ I+ D+II+ + L + F L + ++
Sbjct 113 EKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKI-- 170
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG------DAKNTDEALDYICKL 430
+ ++ ++ +V G T + G + + +D I +L
Sbjct 171 -KRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYEL 229
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL-MRDTESLAKRI 489
+ + + V P++ + + I + + L M + L ++
Sbjct 230 DPKNMSKKHEIDSFYMYPAKHFV-IPEEDKKNAINSILKELDEWLPNLDMLKSHRLKQKT 288
Query 490 CKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR--- 546
D+E + + G + Y + ++ + + D E + + + +
Sbjct 289 LYDIEMIEETG-SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRG 347
Query 547 -----KYNDALIISEHARMKDALDY-------LKDFFSNVRAAGFDEIEQDLTQRFEEKL 594
+ +I R+ A D K + +NV E +L
Sbjct 348 MYKGDRSRKQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN---- 403
Query 595 QELESVSRDPSNENPKLE------DLCFILQEEYHL-NPETITILFVKTRALVDALKNWI 647
Q +E + R +P++E + I++E + ++ T+ L + L ++
Sbjct 404 QVVEQIIRPTGLLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYL 463
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
+K L ++ + + I+ + G + L+ ++ EG+DI
Sbjct 464 AK----RNVKARYL--------HSDIDTIERTEIIRNLRL-GKFDCLVGINLLREGLDIP 510
Query 708 QCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
+ V + + N +IQT GR R SK L AG + E
Sbjct 511 EVGFVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVL---YAGKMTDSIKKAVSETER 567
Query 762 NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENK 806
+ + + + I+ EK + S K PV D N
Sbjct 568 RRKLQKEHNEKHNITPQTIVKP-IREKVVDISDVKHIPVADIPNV 611
>sp|Q81X47|UVRB_BACAN UvrABC system protein B OS=Bacillus anthracis
OX=1392 GN=uvrB PE=3 SV=1
Length=658
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 22/197 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ ++ T+ + + L ++++ G ++ + + I+
Sbjct 441 RIAKNERVLITTLTKKMSEDLTDYLKD------------VGIKVNYLHSEVKTLERIEII 488
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGS 736
+ G ++L+ ++ EG+DI + +LV + + + +IQT GR R
Sbjct 489 RDLRL-GKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENG 547
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ + A I + +E SI + + + I + E+
Sbjct 548 RVIM---YADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEE 604
Query 797 PKPVPDKENKKLLCRKC 813
P+ KK+ ++
Sbjct 605 PETYEATPAKKMTKKER 621
>sp|Q6HBC2|UVRB_BACHK UvrABC system protein B OS=Bacillus thuringiensis
subsp. konkukian (strain 97-27) OX=281309 GN=uvrB
PE=3 SV=1
Length=658
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 22/197 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ ++ T+ + + L ++++ G ++ + + I+
Sbjct 441 RIAKNERVLITTLTKKMSEDLTDYLKD------------VGIKVNYLHSEVKTLERIEII 488
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGS 736
+ G ++L+ ++ EG+DI + +LV + + + +IQT GR R
Sbjct 489 RDLRL-GKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENG 547
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ + A I + +E SI + + + I + E+
Sbjct 548 RVIM---YADRITRSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEE 604
Query 797 PKPVPDKENKKLLCRKC 813
P+ KK+ ++
Sbjct 605 PETYEATPAKKMTKKER 621
>sp|Q2UFL0|DBP9_ASPOR ATP-dependent RNA helicase dbp9 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp9
PE=3 SV=1
Length=605
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 57/134 (43%), Gaps = 7/134 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKV---VFFANQIPV 302
Q + A++GK+ + A TG GKT +L L+K K + +
Sbjct 54 QAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKATDPSFKATTGLILVPTREL 113
Query 303 YEQQKSVFSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI 360
EQ ++V + + G V ++ ++ V + + D+++ TP +V NL +
Sbjct 114 AEQVQNVVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLVVSTPARVVTNLGSSAL 173
Query 361 PSLSIFTLMIFDEC 374
SL T ++ DE
Sbjct 174 -SLENLTHLVIDEA 186
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 11/88 (13%), Positives = 20/88 (23%), Gaps = 13/88 (15%)
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 721
G ++ ++ + K G GID V+ ++
Sbjct 351 AGSSDEDEGEPEDKSKRRKVSGKEKDYG----------ISRGIDFQNVACVLNFDLPSTS 400
Query 722 IKM---IQTRGRGRARGSKCFLLTSNAG 746
I GR G +
Sbjct 401 KSYTHRIGRTGRAGKTGMALSFVIPKDQ 428
>sp|Q0DBU5|RH31_ORYSJ DEAD-box ATP-dependent RNA helicase 31 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3
SV=2
Length=547
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 44/229 (19%), Positives = 80/229 (35%), Gaps = 19/229 (8%)
Query 163 DKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQED--PECQ 220
D+++ P + L + L VE K+ + + + +
Sbjct 17 DEDDGPSGFEDDLFDDEGGEKNL--VESPAKNSAPFESIKGEPIDQEGVVHTRESGGGDS 74
Query 221 NLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA-----MKGKNTIICAPTGCGKTFVSL 275
LS+ +S L ++ A +KGK+ + A TG GKT L
Sbjct 75 YLSQTRFDECSLSPLTLKGVKAAGYERMTAVQEATLPIILKGKDVLAKAKTGTGKTVAFL 134
Query 276 LICEHHLKKFPQGQKGK------VVFFANQIPVYEQQKSVFSKYFERH-GYRVTGISGAT 328
L + K P K VV + +Q + +K + H V + G T
Sbjct 135 LPAIEVVSKLPPIDCDKKRPPISVVVVCPTRELADQAAAEANKLLKFHPSIGVQLVIGGT 194
Query 329 AENVPVEQIVEN-NDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDEC 374
+ +++ N I++ TP L ++++ G L ++I DE
Sbjct 195 RMALEQKRMHTNPCQILVATPGRLKDHMENTPGFATRLMGVKVLILDEA 243
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/288 (18%), Positives = 95/288 (33%), Gaps = 33/288 (11%)
Query 504 FGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDA 563
F T+ ++ + +A + M + + RI AL L
Sbjct 228 FATRLMGVKVLILDEADRLLDMGFRTDIERIVAALPKQRQTLLFSATVPDEVRQVCHIAM 287
Query 564 LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 623
L+ F N G +E + Q + + + L +L +
Sbjct 288 KRDLE--FVNTVEEGSEETHSQVKQMHV------------VAPLDKQFSILYGLLTDHIS 333
Query 624 LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILD 683
N + I+F T + + + LK + + Q+ + I
Sbjct 334 ENVDYKVIVFCTTAKVTSLVAELLSE------LKLNVREIHSRKPQSY------RTRISK 381
Query 684 AFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLL 741
FK S IL+++ V+ G+D LV+ + + I GR RG LL
Sbjct 382 EFKESKGL-ILVSSDVSARGVDYPNVTLVVQMGVPTDREQYIHRLGRTGRRGNEGSGILL 440
Query 742 TSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL-HIQTHEK 788
+ E+ + K+ + ++ L L D EK L H++ +K
Sbjct 441 LA---PWEEYFLRSIKDLPITEATLPLIDLDTKRKVEKALAHVEVKDK 485
>sp|Q6CRF4|DBP4_KLULA ATP-dependent RNA helicase DBP4 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP4 PE=3 SV=1
Length=770
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 30/258 (12%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR-K 547
+ + Q ++ G ++ + +A M K I L L
Sbjct 166 LIGTPGRILQHMDQAVGFNTSNLQLLVLDEADRCLDMGFKRTLDAIINNLPASRQTLLFS 225
Query 548 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
+ + + AR+ + A + L Q + E
Sbjct 226 ATQSQSLDDLARLSLTDYKQVGTMEVLNANSSSATPESLQQSYIEV------------PL 273
Query 608 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 667
KL+ L ++ + I+F+ + K L+PGI
Sbjct 274 PDKLDILFSFIKSHLK----SKLIVFL------SSSKQVHFVYETFRKLQPGISLMHLHG 323
Query 668 NQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
Q A+ LD F + L +T V GID + VI + +V I
Sbjct 324 RQ----KQTARTETLDKFSRAQHV-CLFSTDVVARGIDFPSVDWVIQVDCPEDVDTYIHR 378
Query 728 RGRGRA--RGSKCFLLTS 743
GR + K ++ +
Sbjct 379 VGRAARFGKEGKSLIMLT 396
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKVVFFANQIPVYE 304
Q E ++KG + + A TG GKT L+ L + + + +
Sbjct 68 QRESIPLSLKGHDVLGAAKTGSGKTLAFLIPVIEKLYREKWTDMDGLGALIISPTRELAM 127
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V SK +H G+ + ++ + +I+I TP ++ ++ + + S
Sbjct 128 QIYEVLSKI-GKHTTFSAGLVIGGKDVTFEKERISRINILIGTPGRILQHMDQAVGFNTS 186
Query 365 IFTLMIFDECHNT 377
L++ DE
Sbjct 187 NLQLLVLDEADRC 199
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus
laevis OX=8355 GN=ddx1 PE=2 SV=1
Length=740
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 11/138 (8%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K E + ++E I+F +T+ D ++ + K
Sbjct 493 KGEYIVRAIKEHKMD----QAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF---SCVCL 545
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
++ P +K L+ FK + LI T VA GIDI VI N + I
Sbjct 546 HSDRKPPERKHNLERFKKC-EVRFLICTDVAARGIDIRGVPYVINVTLPDEKQNYVHRIG 604
Query 727 TRGRGRARGSKCFLLTSN 744
GR G L+ S
Sbjct 605 RVGRAERMGLAISLVASE 622
Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 31/143 (22%), Positives = 52/143 (36%), Gaps = 6/143 (4%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG-GSSGPLP 403
+ TP + + + G + SLS ++ DE + Y+ + Q S G
Sbjct 344 VGTPGRIDDLISTGKL-SLSQVRFLVLDEA-DGLLSQGYSDFINRIYGQIPQITSDGKRL 401
Query 404 QVIGLTASVGVGDAKNTDEALDY 426
QVI +A++ D K E + +
Sbjct 402 QVIVCSATLHSFDVKKLSEKIMH 424
>sp|A3LWH3|DBP7_PICST ATP-dependent RNA helicase DBP7 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DPB7 PE=3 SV=2
Length=733
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 27/186 (15%)
Query 589 RFEEKLQELESVSRDPSNENPKLED------LCFILQEEYHLNPETITILF--------- 633
+ E++ + + ++ PKL L I + N T TI+F
Sbjct 380 KHSEEVTAPDQLIQNVVVVPPKLRLVTLSAILKKISSDMSGTNNSTRTIVFFSCSDSVNF 439
Query 634 ---VKTR--ALVDALKNWIEGNPKLSFLKPGI-LTGRGKT--NQNTGMTLPAQKCILDAF 685
V TR +KN G + ++ L G+G + ++ + L AF
Sbjct 440 HFDVFTRGGNTFKKVKNDESGKLETVEVENDTPLIGQGTAVYKLHGSLSQQTRTSTLQAF 499
Query 686 KASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-ARGSKCFLL 741
N IL T VA G+D+ VI Y+ + + GR R + L
Sbjct 500 IKDSKSNHSILFCTDVASRGLDLPNIASVIEYDPPFTIDDHLHRIGRSARVGKEGTATLF 559
Query 742 TSNAGV 747
Sbjct 560 LLPGNE 565
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 15/207 (7%)
Query 177 KERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTN 236
K + S L+ + ++ D+ ++ + L N +++T
Sbjct 104 KNNSYVSSLFTSNQSSSQLKVTKESDEKTYLPSNAPVEDASTFEGLGINERLSKHLTETL 163
Query 237 LYSPFKPRNYQLELALPAMKGK-NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV-- 293
+ P Q + + + + I A TG GKT LL H L K K+
Sbjct 164 RFKN--PTKVQKSVIPTMLSTERDLFIKAQTGSGKTLSFLLPIFHKL---MMENKHKINR 218
Query 294 ------VFFANQIPVYEQQKSVFSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIIL 346
V + Q V + + V GI G + +I + +I++
Sbjct 219 DSGLFAVILTPTRELATQIYGVLETLTRCYHHIVPGIVIGGEKKKSEKARIRKGVNILVG 278
Query 347 TPQILVNNLKKGTIPSLSIFTLMIFDE 373
TP L ++++ +S +I DE
Sbjct 279 TPGRLADHMENTESLDISQLRWLILDE 305
>sp|Q9PR24|UVRB_UREPA UvrABC system protein B OS=Ureaplasma parvum
serovar 3 (strain ATCC 700970) OX=273119 GN=uvrB PE=3 SV=1
Length=666
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/400 (16%), Positives = 133/400 (33%), Gaps = 42/400 (11%)
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRD-----TESLAKR 488
D+ + +++ EL++ V K + +E+ RI + K + ++ E+ +
Sbjct 255 DSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGFCSGVENYYRH 314
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF----QMPDKDEESRICKALFLYTSH 544
+ + +F + + W++ V ++ + M + D + + +
Sbjct 315 LEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQTLVEYGFRLP 374
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
N L E + Y+ ++ A D R L DP
Sbjct 375 SALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL--------DP 426
Query 605 SNENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
E K E L E L N + V T + + L N++ +K L
Sbjct 427 IIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTK----IKAAYL- 481
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG--- 719
+ + + I++ + G ++ ++ ++ EG+D+ + V +++
Sbjct 482 -------HNELKTLERSVIINKLR-KGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGF 533
Query 720 --NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
+ +IQ GR R K + A VI + E I +
Sbjct 534 FRSDKSLIQIIGRAARNADGKVIM---YADVITQAMQTAINETKRRREIQLAFNLKHNII 590
Query 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKAL 816
+ I+ + D ++ + K +K +K K L
Sbjct 591 PKTIIKPIHEDLSGHDYKQNAELYAAKASKNEYNQKIKEL 630
>sp|B1AIA9|UVRB_UREP2 UvrABC system protein B OS=Ureaplasma parvum
serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) OX=505682
GN=uvrB PE=3 SV=1
Length=666
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/400 (16%), Positives = 133/400 (33%), Gaps = 42/400 (11%)
Query 435 DASVIATVKHNLEELEQVVYKPQKFFRKVES-RISDKFKYIIAQLMRD-----TESLAKR 488
D+ + +++ EL++ V K + +E+ RI + K + ++ E+ +
Sbjct 255 DSRLAIAIENIKNELDERVKFFLKNNQLIEAQRIEQRTKQDLESIVEFGFCSGVENYYRH 314
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF----QMPDKDEESRICKALFLYTSH 544
+ + +F + + W++ V ++ + M + D + + +
Sbjct 315 LEHREPFQTPWTIFDFFSYNNQDWLLIVDESHISLPQVKGMHNTDRSRKQTLVEYGFRLP 374
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
N L E + Y+ ++ A D R L DP
Sbjct 375 SALDNRPLNYDEFNKKLSKTIYVSATPNDEEIALSDNHIVSQIVRPTGLL--------DP 426
Query 605 SNENPKLEDLCFILQEEYHL--NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT 662
E K E L E L N + V T + + L N++ +K L
Sbjct 427 IIEIRKTEHQIDDLINELMLLKNKNQRAFITVMTIRMAEDLTNYLNNTK----IKAAYL- 481
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG--- 719
+ + + I++ + G ++ ++ ++ EG+D+ + V +++
Sbjct 482 -------HNELKTLERSVIINKLR-KGIYDCVVGINLLREGLDVPEVAGVFIFDADKPGF 533
Query 720 --NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
+ +IQ GR R K + A VI + E I +
Sbjct 534 FRSDKSLIQIIGRAARNADGKVIM---YADVITQAMQTAINETKRRREIQLAFNLKHNII 590
Query 777 REKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKAL 816
+ I+ + D ++ + K +K +K K L
Sbjct 591 PKTIIKPIHEDLSGHDYKQNAELYAAKASKNEYNQKIKEL 630
>sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp9
PE=3 SV=2
Length=619
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/227 (19%), Positives = 89/227 (39%), Gaps = 25/227 (11%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------KPRNYQLELALP 253
++ K++ +D+ D +N +N S D L KP Q +
Sbjct 1 MKRKLDANDVPSPEAADDSVKNDVDNLDFESLNLDPRLRQALVKEKFTKPTLVQAKAIPL 60
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KV---VFFANQIPVYEQQKSV 309
A++GK+ + A TG GKT +L + + K + + EQ ++V
Sbjct 61 ALEGKDILARAKTGSGKTAAYVLPILQTILQKKANDPSLKATTGLILVPTRELAEQVQNV 120
Query 310 FSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
+ + G V ++ ++ V + + D+I+ TP ++ NL + SL T
Sbjct 121 ITTFAAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSAL-SLENLT 179
Query 368 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
++ DE ++++ D+ + + +P+ ++A+
Sbjct 180 HLVIDEA---------DLVLSYGYDEDINALAKAIPRGVQTFLMSAT 217
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 8/45 (18%), Positives = 12/45 (27%), Gaps = 3/45 (7%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLT 742
GID V+ ++ I GR G +
Sbjct 395 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVV 439
>sp|A3AVH5|RH13_ORYSJ DEAD-box ATP-dependent RNA helicase 13 OS=Oryza
sativa subsp. japonica OX=39947 GN=Os04g0510400 PE=2
SV=2
Length=832
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 70/404 (17%), Positives = 129/404 (32%), Gaps = 34/404 (8%)
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
L A + + + D++ + L V+ V E ++ + K +
Sbjct 288 LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGR 347
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENL----------SQIQNREFGTQKYEQWIVTVQ 517
+ Q + SL+ + + + + S I+ EQ + T
Sbjct 348 LWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQTVGTTP 407
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA 577
V + K ++ + A +++ RK +++ A L ++ R
Sbjct 408 SCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQARMK 467
Query 578 GFDEI-EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
EI + EKL+E D K L +IL + TI+F +
Sbjct 468 PNAEIVDLTKASILPEKLEESFIECSDDD----KDAYLYYILSVH----GQGRTIIFCTS 519
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
A + L + + + G + M A+ +D F+ S +++IL+A
Sbjct 520 IAALRHLSSILR------------VLGINVLTNHAQMQQRARMKAVDRFRES-ENSILVA 566
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQIN 754
T G+D VI Y+ + I GR R L S A + +
Sbjct 567 TDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLC 626
Query 755 MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
K + AV L Q + ++SQE
Sbjct 627 KSLSKENLQQFPVDHAYMPAVMNRLTLARQIDKITRKNSQENAN 670
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (17%), Positives = 44/142 (31%), Gaps = 20/142 (14%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHL------------------KKFPQGQKGKVV 294
A +GK+ I A TG GKT L L + + + +
Sbjct 232 AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL 291
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ +Q + + +V I G + + +I++ TP L
Sbjct 292 ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL 351
Query 355 LKKGT--IPSLSIFTLMIFDEC 374
+ G + L + + DE
Sbjct 352 MSTGNQHLIKLHSLSFFVLDEA 373
>sp|A2XVF7|RH13_ORYSI DEAD-box ATP-dependent RNA helicase 13 OS=Oryza
sativa subsp. indica OX=39946 GN=OsI_016050 PE=3 SV=2
Length=832
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 70/404 (17%), Positives = 129/404 (32%), Gaps = 34/404 (8%)
Query 408 LTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 467
L A + + + D++ + L V+ V E ++ + K +
Sbjct 288 LRALILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGR 347
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENL----------SQIQNREFGTQKYEQWIVTVQ 517
+ Q + SL+ + + + + S I+ EQ + T
Sbjct 348 LWELMSTGNQHLIKLHSLSFFVLDEADRMIERGHFHELQSIIEMLPVTNGSDEQTVGTTP 407
Query 518 KACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA 577
V + K ++ + A +++ RK +++ A L ++ R
Sbjct 408 SCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQARMK 467
Query 578 GFDEI-EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
EI + EKL+E D K L +IL + TI+F +
Sbjct 468 PNAEIVDLTKASILPEKLEESFIECSDDD----KDAYLYYILSVH----GQGRTIIFCTS 519
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
A + L + + + G + M A+ +D F+ S +++IL+A
Sbjct 520 IAALRHLSSILR------------VLGINVLTNHAQMQQRARMKAVDRFRES-ENSILVA 566
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQIN 754
T G+D VI Y+ + I GR R L S A + +
Sbjct 567 TDGFARGMDFDDVRTVIHYQLPHSTDVYIHRSGRTARKSMAGCSIALISPADKAKFYSLC 626
Query 755 MYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
K + AV L Q + ++SQE
Sbjct 627 KSLSKENLQQFPVDHAYMPAVMNRLTLARQIDKITRKNSQENAN 670
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/142 (17%), Positives = 44/142 (31%), Gaps = 20/142 (14%)
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHL------------------KKFPQGQKGKVV 294
A +GK+ I A TG GKT L L + + + +
Sbjct 232 AAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRAL 291
Query 295 FFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ +Q + + +V I G + + +I++ TP L
Sbjct 292 ILTPTRELAKQVCDHLKEAAKFLRIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWEL 351
Query 355 LKKGT--IPSLSIFTLMIFDEC 374
+ G + L + + DE
Sbjct 352 MSTGNQHLIKLHSLSFFVLDEA 373
>sp|Q8JHJ2|DDX55_DANRE ATP-dependent RNA helicase DDX55 OS=Danio
rerio OX=7955 GN=ddx55 PE=2 SV=2
Length=593
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 49/248 (20%), Positives = 83/248 (33%), Gaps = 45/248 (18%)
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD-----ALDYLK 568
+ Q A ++ P + E+ KA L + K D L++ E R+ D +L+ +
Sbjct 130 LKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEADRLLDMGFEASLNTIL 189
Query 569 DFFSNVRAAGFDEIEQ--------------DLTQRFEEKLQELESVSRDPSNEN------ 608
+ R G Q + +EK SV + P+ +
Sbjct 190 GYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAKLSNYYTMC 249
Query 609 ---PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
K L L++ ++F T A V+ +E K +
Sbjct 250 RAEEKFNTLVAFLRQH----KHEKQLVFFSTCACVEYFGKALEVLVKNVSIHC------- 298
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ M + I F+A IL+ T V GIDI + N V+ Y+ + +
Sbjct 299 ---IHGKMKHK-RNKIFADFRAL-KSGILVCTDVMARGIDIPEVNWVLQYDPPSSASSFV 353
Query 726 QTRGR-GR 732
GR R
Sbjct 354 HRCGRTAR 361
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/119 (18%), Positives = 45/119 (38%), Gaps = 10/119 (8%)
Query 266 TGCGKTFVSLLICEHHLKKFPQG-QKGKV--VFFANQIPVYEQQKSVFSKYFE--RHGYR 320
TG GKT ++ L K + +K +V + + Q V ++ + +
Sbjct 55 TGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISEVMGRFLQGFPQFTQ 114
Query 321 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-----GTIPSLSIFTLMIFDEC 374
+ I G+ + + +III TP L + ++ ++ +++ DE
Sbjct 115 ILLIGGSNPIEDVEKLKTQGANIIIATPGRLEDMFRRKADGLDLATAVKSLDVLVLDEA 173
>sp|Q07XC8|RAPA_SHEFN RNA polymerase-associated protein RapA OS=Shewanella
frigidimarina (strain NCIMB 400) OX=318167 GN=rapA
PE=3 SV=1
Length=968
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 69/479 (14%), Positives = 146/479 (30%), Gaps = 75/479 (16%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQIL---VNNLKKGTIPSLSIFT-----LMIFDECHNT- 377
+ + + +ND T Q++ ++ L+K L LM+ DE H+
Sbjct 227 SVFDEDRCVEAYADNDNPFYTEQLIICSLDLLRKK--KRLEQAVDADWDLMVVDEAHHLE 284
Query 378 -SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
S+ P + + + S +P V+ LTA+ D
Sbjct 285 WSEDAP------SRAYKIVEALSEVVPGVLLLTATP----------------------DQ 316
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
+ L L+ P +F+ ++ ++++ Y + S K++ N
Sbjct 317 LGHQSHFARLRLLD-----PDRFYD-YDAFLAEEASYKDVAEAAEALSQDKKLPDSAINS 370
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
E + + I + Q ++ + L + + A +
Sbjct 371 LTELLSEKDIEPSIRLIQSKDVDAESQQAARQELLQEL-LDRHGTGRVLYRNSRASVKGF 429
Query 557 HARMKDAL--DYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLE 612
R+ +A D + + R + + + L ++L + S K +
Sbjct 430 PKRLFNAYPHDMPAQYVTAERVNAMMGSAKQPQAKAAQALSPEKLYQAFENDSASWWKFD 489
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L E + ++ +L+ + G T +
Sbjct 490 PRVDWLIEFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHED 538
Query 673 MTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
M++ + F + G LI + + EG + + +IL++ N + Q GR
Sbjct 539 MSIIERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLILFDLPLNPDLLEQRIGR 597
>sp|Q4IAS1|DBP4_GIBZE ATP-dependent RNA helicase DBP4 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP4 PE=3 SV=1
Length=793
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/160 (18%), Positives = 57/160 (36%), Gaps = 12/160 (8%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KGK+ + A TG GKT L+ L + + + +
Sbjct 78 QARAVPLALKGKDILGAAKTGSGKTLAFLIPVLEKLYRAQWTEFDGLGALIISPTRELAA 137
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K +H + + G + E+ ++ +I++ TP ++ + + +
Sbjct 138 QIFEVLRKVGTKHSFSAGLVIGGKSLKEEAER-LDRMNILVCTPGRMLQHFDQTAGFDAN 196
Query 365 IFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ 404
+++ DE + IM + LP+
Sbjct 197 NLQILVLDEA---------DRIMDMGFQSAVDALIEHLPR 227
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/141 (22%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+ KL+ L ++ + I+F+ + V + L+PGI
Sbjct 277 TPLTEKLDTLYGFIKANLK----SKIIVFLSSGKQVRFV------YESFRHLQPGIPLLH 326
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
Q G A+ I F A+ L AT V GID + VI + +V
Sbjct 327 LHGRQKQG----ARMEITSRFTAAKQT-CLFATDVVARGIDFPAVDWVIQADCPEDVDTY 381
Query 725 IQTRGR-GRAR-GSKCFLLTS 743
I GR R + L
Sbjct 382 IHRVGRTARYESNGRAVLFLD 402
>sp|A2QCW6|DBP9_ASPNC ATP-dependent RNA helicase dbp9 OS=Aspergillus
niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513)
OX=425011 GN=dbp9 PE=3 SV=1
Length=616
Score = 64.8 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/179 (21%), Positives = 72/179 (40%), Gaps = 19/179 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KV---VFFA 297
KP Q + A+ GK+ + A TG GKT +L + + K +
Sbjct 49 KPTPVQAKAIPLALAGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILV 108
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ EQ + V + + G V ++ +E V + + DI+I TP ++ NL
Sbjct 109 PTRELAEQVQKVVTTFAAFCGKDVRSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANL 168
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
++ SL T ++ DE ++++ D+ + S +P+ ++A+
Sbjct 169 GNSSL-SLDNLTHLVIDEA---------DLVLSYGYDEDINALSKAIPRGVQTFLMSAT 217
Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 4/27 (15%), Positives = 7/27 (26%), Gaps = 0/27 (0%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQT 727
GID V+ ++
Sbjct 392 SRGIDFQNVACVLNFDLPTTAKSYTHR 418
>sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo
sapiens OX=9606 GN=DDX54 PE=1 SV=2
Length=881
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 1/120 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
+ GK+ + A TG GKT LL LK + + + + Q +
Sbjct 131 LDGKDVVAMARTGSGKTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELG 190
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ G + I G + EN DIII TP LV+ + ++ L ++FDE
Sbjct 191 KFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSL-KLQSVEYVVFDEA 249
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/158 (21%), Positives = 57/158 (36%), Gaps = 18/158 (11%)
Query 591 EEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGN 650
+ KL E S E+ K L +L + P+ T++FV T+ + L +
Sbjct 304 DTKLNEQLKTSFFLVREDTKAAVLLHLL--HNVVRPQDQTVVFVATKHHAEYLTELLTTQ 361
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+ + + + A+K L F G + LI T +A G+DI +
Sbjct 362 ------RVSC------AHIYSALDPTARKINLAKF-TLGKCSTLIVTDLAARGLDIPLLD 408
Query 711 LVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNA 745
VI Y + + G R G+ L+ +
Sbjct 409 NVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDE 446
>sp|O34750|YFML_BACSU Probable ATP-dependent RNA helicase YfmL
OS=Bacillus subtilis (strain 168) OX=224308 GN=yfmL PE=1 SV=1
Length=376
Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
KP Q + A M GK+ I +PTG GKT L +K P+ + + V A
Sbjct 26 KPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIK--PEQKHPQAVILAPSRE 83
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q V + R + G VE++ ++ II+ TP + +K +
Sbjct 84 LVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKL- 142
Query 362 SLSIFTLMIFDE 373
+ ++ DE
Sbjct 143 KMHEVKTIVLDE 154
Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 96/294 (33%), Gaps = 26/294 (9%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV 516
QK + V S + I Q+++D ++ ++ L + ++ + +K+ IV
Sbjct 70 QKHPQAVILAPSRELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGT 129
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
K + + + T L L + L+D +
Sbjct 130 PGRVFELIKAKKLKMHEVKTIVLDETDQL-----VLPEHRETMKQIIKTTLRDRQLLCFS 184
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC------FILQEEYHLNPETIT 630
A + +D+ + ++ + L+ K + L L ++
Sbjct 185 ATLKKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEGMQA 244
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 690
++FV + N KL++ + + + + I+ F G+
Sbjct 245 LVFV------RDIGNLSVYAEKLAYHHVELGVLHSEAKK------MERAKIIATF-EDGE 291
Query 691 HNILIATSVADEGIDIAQCNLVILYEYVGN--VIKMIQTRGRGRARGSKCFLLT 742
+L+AT +A G+DI VI + + GR G+ L+T
Sbjct 292 FPLLLATDIAARGLDIENLPYVIHADIPDEDGYVHRSGRTGRAGKEGNVLSLVT 345
>sp|A4W6G3|RAPA_ENT38 RNA polymerase-associated protein RapA OS=Enterobacter
sp. (strain 638) OX=399742 GN=rapA PE=3 SV=1
Length=968
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/494 (13%), Positives = 144/494 (29%), Gaps = 65/494 (13%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIVVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGA--TAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + E ++I + + + ++
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDERYAEAQHDADNPFETEQLVICSLDFVRRSKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S+ P M + + +P ++ LTA+ +
Sbjct 271 DAEWDLLVVDEAHHLVWSENAPSREYM------AIEQLAERVPGILLLTATP---EQLGL 321
Query 421 DEALDYICKLCAS--LDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL 478
+ + L + D V + N + V +S+ ++ L
Sbjct 322 ESHFARLRLLDPNRFHDFDVFVEEQQNYRPVADAVAM-----LLAGKHLSNDELNTLSDL 376
Query 479 MRDTESLAKRICKDLENLSQIQNREF-GTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
+ + +D+E L N + G Q +V++ K
Sbjct 377 IGE---------QDIEPLLHTANSDRDGADAARQELVSMLMDRHGTSRVLFRNTRNGVKG 427
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
H K ++ + K S A + + Q FE
Sbjct 428 FPKRELHTIKLPLPTQYQTAIKVSGIMGARK---SAEERARDMLYPEQIYQEFE------ 478
Query 598 ESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK 657
+ + L + ++ A L+ + ++
Sbjct 479 -----GDTGTWWNFDPRVEWLMGYLTAHRSQKVLVICAKAATALQLEQVLRER---EGIR 530
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYE 716
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 531 AAVF--------HEGMSIIERDRAAAWFGEEDSGAQVLLCSEIGSEGRNFQFASKLVMFD 582
Query 717 YVGNVIKMIQTRGR 730
N + Q GR
Sbjct 583 LPFNPDLLEQRIGR 596
>sp|Q80Y44|DDX10_MOUSE Probable ATP-dependent RNA helicase DDX10
OS=Mus musculus OX=10090 GN=Ddx10 PE=1 SV=2
Length=875
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 50/123 (41%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK--VVFFANQIPVYEQQKSVFS 311
A++GK+ + A TG GKT L+ L + V+ + + Q V
Sbjct 103 ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 162
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + H + I G + + + N +I++ TP L+ ++ + + +++
Sbjct 163 KVGKNHDFSAGLIIGG-KDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVL 221
Query 372 DEC 374
DE
Sbjct 222 DEA 224
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/139 (19%), Positives = 45/139 (32%), Gaps = 17/139 (12%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+ K+ L L+ +I+F + V L L+PGI
Sbjct 296 ELHQKISVLFSFLRSHLKK----KSIVFFSSCKEVQYLYRVFCR------LRPGISILAL 345
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
Q + + + F +L AT +A G+D N V+ ++ + I
Sbjct 346 HGRQ----QQMRRMEVYNEF-VRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYI 400
Query 726 QTRGR-GR-ARGSKCFLLT 742
GR R + L+
Sbjct 401 HRAGRTARYKEDGEALLIL 419
>sp|Q5AZA6|DBP9_EMENI ATP-dependent RNA helicase dbp9 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp9 PE=3 SV=1
Length=610
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/139 (24%), Positives = 58/139 (42%), Gaps = 7/139 (5%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH-LKKFPQGQKGKV---VFFA 297
KP Q + A++GK+ + A TG GKT +L L+K K +
Sbjct 50 KPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAIDPSMKATTGLILV 109
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ EQ + V + + G V ++ ++ V + + DI++ TP ++ NL
Sbjct 110 PTRELAEQVQKVITTFAAFCGKDVRSVNLTQKVSDAVQKAMLADYPDIVVSTPARVIANL 169
Query 356 KKGTIPSLSIFTLMIFDEC 374
+ SL T ++ DE
Sbjct 170 GTSAL-SLENLTHLVIDEA 187
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 4/27 (15%), Positives = 8/27 (30%), Gaps = 0/27 (0%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQT 727
GID V+ ++ +
Sbjct 389 SRGIDFQNVACVLNFDLPTSSKSYTHR 415
>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129 / Subtype 1) OX=272634 GN=uvrB
PE=3 SV=1
Length=657
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 45/328 (14%), Positives = 113/328 (34%), Gaps = 35/328 (11%)
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E+ A+ + + ++ T+ +W++ V ++ + I + L
Sbjct 310 ENYARHLEHRPPHSKPYNIFDYFTK--GEWLLVVDESHQTLPQIKGMYNTDISRKQSLIE 367
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL--ESV 600
R + S + + + + V E+++ +++L +
Sbjct 368 YGFR------LPSALDNRPLSYEEFRQGINKVIYVSATPREEEIQLSHNNVVEQLVRPTY 421
Query 601 SRDPSN-ENPK---LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFL 656
DP PK +EDL + + N T + V T + + L ++++ +
Sbjct 422 LLDPEVIVKPKDNQVEDLVSEIINQRKHN--GRTFVTVLTIKMAENLTDFLKE----RNI 475
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE 716
K + + + + +L + G++ L+ ++ EG+D+ + +LV +++
Sbjct 476 KVAYI--------HKDIKALERLILLTDLR-KGEYECLVGINLLREGLDVPEVSLVAIFD 526
Query 717 -----YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
+ +IQ GR R + + + + I + + Q
Sbjct 527 ADIPGLPRDERSLIQIIGRAARNVHGRVIMYANTISEQMDKAIKETQRRRTIQMAYNEQH 586
Query 771 WDEAVFREKILHIQTHEKFIRDSQEKPK 798
+ +K + + K S E+ K
Sbjct 587 HKTPMTVQKPITLNQPIKLKTKSSEQQK 614
>sp|P0C218|DDX20_DANRE Probable ATP-dependent RNA helicase DDX20
OS=Danio rerio OX=7955 GN=ddx20 PE=3 SV=1
Length=761
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/276 (15%), Positives = 85/276 (31%), Gaps = 24/276 (9%)
Query 528 KDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLT 587
+D+ S + + N ++ + L + + + L
Sbjct 182 EDDSSSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGLL 241
Query 588 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI 647
++ + + S S K++ L E + P ++F L + +
Sbjct 242 -GLKQYYKIVPSHSLPHKVFEEKVQSLL----ELFSKIPFNQALVFSNLHTRAQHLADIL 296
Query 648 EGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 707
G + G++ + + K +LI+T + GID
Sbjct 297 SSK------------GLPAVCISGGLSQDQRLEAMWKLKQY-QCRVLISTDLTSRGIDAE 343
Query 708 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
+ NLVI + + + GR R + + E+E M + L
Sbjct 344 KVNLVINLDVPQDWETYMHRIGRAG-RFGTLGVAVTYCCHGEEENKMMA---IAQKCSLD 399
Query 768 LQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDK 803
L + + + H+ I ++ KPK +PD
Sbjct 400 LMHLPDPIPPGIMEEACDHDVII-ETLSKPK-IPDN 433
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 26/133 (20%), Positives = 47/133 (35%), Gaps = 3/133 (2%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P QL+ G + I+ A +G GKT V I L + +V+ A
Sbjct 48 RPSPIQLKAIPLGRCGLDLIVQAKSGTGKTCVFTTIALDSL--ILENATTQVLVLAPTRE 105
Query 302 VYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIP 361
+ Q +V + +Q ++ I I +P + ++ G +
Sbjct 106 IAVQIHAVVMAIGSAMEGLECHVFIGGRPISQDKQHLKKCHIAIGSPGRIKQLIEMGAL- 164
Query 362 SLSIFTLMIFDEC 374
+S L + DE
Sbjct 165 MVSSIRLFVLDEA 177
>sp|A8EXS6|UVRB_RICCK UvrABC system protein B OS=Rickettsia canadensis
(strain McKiel) OX=293613 GN=uvrB PE=3 SV=1
Length=661
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 89/588 (15%), Positives = 180/588 (31%), Gaps = 112/588 (19%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVT--- 322
TG GKTF + + + + + A+ + Q S F ++
Sbjct 40 TGSGKTF----TMANIIARMNRP----TLIMAHNKTLAAQIYSEMKLMFPKNAIEYFVSY 91
Query 323 ------------GISGATAENVPVEQI-----------VENNDIIILTPQILVNNLKKGT 359
+ ++ EQI +E D+I+++ + L
Sbjct 92 YDYYQPEAYIARTDTFIEKDSSINEQIDLMRHSATRSLLERRDVIVVSSVSCIYGLGSPN 151
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNY----LDQKLGGSSGPLPQVIGLTASVGVG 415
+ L + K +P + ++ + ++ G +V G +
Sbjct 152 LYYQMTVNL-------ESGKSYPRDKLLSDLVNLQYERNDIGFERGCFRVKGDNIDIFPS 204
Query 416 DAKN-------TDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
+ L+YI + + K + V PQ+ K S I
Sbjct 205 HYSDKAWRLSFVGNELEYIHEFDPLTGTKLAKLDKAMVFGNSHFV-IPQETVNKAISEIE 263
Query 469 DKFKYIIAQL-----MRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVT-------- 515
+ + + L + +T+ L +R DLE L+ G + Y +++
Sbjct 264 VELQKRLELLKSQNKILETQRLNQRTQYDLEMLTTTG-SCKGIENYSRFLTGRNAGEPPP 322
Query 516 -----VQKACMVF------------QMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ K ++F M + D + + N L E
Sbjct 323 TLFEYLPKDALLFVDESHVSVPQIRAMYNGDRARKKVLVEHGFRLPSALDNRPLKFEEWE 382
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+ + ++ + +L R L P+ ++EDL +
Sbjct 383 KFRPQTIFVSATPGPFELEETGGLVVELIIRPTGLLD--PECIIKPATN--QVEDLISEI 438
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
Q + ++ T+ + + L +++ K L ++ + +
Sbjct 439 QT--TIAKGLRVLVTTLTKKMAEDLTTYLQELK----YKSSYL--------HSNVHTLER 484
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GR 732
IL + G NIL+ ++ EG+DI +C LV + + + + +IQT GR R
Sbjct 485 LEILRDLR-QGTINILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAAR 543
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
+ L A I K E M I + + + I
Sbjct 544 NSEGRVIL---YADKITKSIDKAVSETMRRRQIQQEYNEKHGIIPQTI 588
>sp|Q6CDN5|DBP6_YARLI ATP-dependent RNA helicase DBP6 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP6 PE=3
SV=1
Length=607
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/353 (16%), Positives = 103/353 (29%), Gaps = 41/353 (12%)
Query 407 GLTASVGVGDAKNT-DEALDYICKLCASLDASVIATVKHNLEELEQ-----VVYKPQKFF 460
G TA+ G+ + D + I + ++ V+ LE L + VV
Sbjct 246 GKTATYGIPIIEKLRDRIVPRIRAVVVLPTKPLVMQVRDVLENLSKGSSLSVVALRNDRS 305
Query 461 RKVESRISDKFKYIIAQLMRDTESLAKR--ICKDLENLSQIQNREFGTQKYEQWIVTVQK 518
K E + + ++A R E + + + +E L + Q Y W +Q
Sbjct 306 TKRERAVLETADIVVAAPGRLVEQVKENPELFSYIEFLVVDEADRLLGQDYYDWASVLQ- 364
Query 519 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 578
+ + R T H + LI S D +
Sbjct 365 ----------NNQQRAQAGKTNLTEHYVRNMQTLIFSATLTANPEHIASMDIHNPGVFVI 414
Query 579 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 638
+ + E + + + K LC +L ++F K+
Sbjct 415 GSSDSYSIPKSLTEIVTHVSAA--------EKPLMLCELLV----QRDINRGVVFTKSSE 462
Query 639 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS 698
+ +E F K + + ++ + F G + L+ T
Sbjct 463 TAARVARMMEIMDADIFHK-----DWKIAAVSAETSSVHRRRSMKQF-IDGKIDFLVCTD 516
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLTSNAGVI 748
+ GID + VI Y+ + + G R G+ LT +
Sbjct 517 LVSRGIDF-VVDNVINYDIPSGKREYVHRVGRTARAGREGNAYTFLTGSGEAK 568
Score = 57.1 bits (136), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 3/125 (2%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L+ + + V P+ Q + V +
Sbjct 236 DLLVSASTGSGKTATYGIPIIEKLRDRIVPRI-RAVVVLPTKPLVMQVRDVLENLSKGSS 294
Query 319 YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 378
V + ++E DI++ P LV +K+ S ++ DE
Sbjct 295 LSVVALRN-DRSTKRERAVLETADIVVAAPGRLVEQVKENP-ELFSYIEFLVVDEADRLL 352
Query 379 KQHPY 383
Q Y
Sbjct 353 GQDYY 357
>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium
leprae (strain TN) OX=272631 GN=recG PE=3 SV=2
Length=743
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/243 (15%), Positives = 78/243 (32%), Gaps = 41/243 (17%)
Query 192 IKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLEL- 250
++ T D ++ + + + E E S +++ PF+ Q E+
Sbjct 238 ARERLTFDEAVGLQWALVTRRHGELSE-SGPSAPPRSDGLMAELMRRLPFELTEGQREVR 296
Query 251 -----ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
L A + N ++ G GKT V++L + + V A + Q
Sbjct 297 DVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMID-----AGYQCVLLAPTEVLAAQ 351
Query 306 QKSVFSKYFERHGY-----------RVTGISGAT----AENVPVEQIVENNDIIILTPQI 350
G +V ++G+ + V + I+I T +
Sbjct 352 HLLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIVIGTHAL 411
Query 351 LVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
L + ++ +++ DE H + + +G +P ++ +TA
Sbjct 412 LQDAIE------FHNLGMVVVDEQHRFG--------VEQRDQLRTKARTGIMPHLLVMTA 457
Query 411 SVG 413
+
Sbjct 458 TPI 460
Score = 41.7 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 22/92 (24%), Positives = 44/92 (48%), Gaps = 3/92 (3%)
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+ L+ G L + ++ + + AF+A G+ ++L+ T+V + G+D+ +++
Sbjct 549 ARLRSGELANVRLALMHGRLSADEKDAAMMAFRA-GEIDVLVCTNVIEVGVDVPNATIML 607
Query 714 LYEYVGNVIKMI-QTRGR-GRARGSKCFLLTS 743
+ + I + Q RGR GR LL S
Sbjct 608 VMDADRFGISQLHQLRGRIGRGTHPSLCLLAS 639
>sp|B5BT18|BTAF1_ARATH TATA-binding protein-associated factor
BTAF1 OS=Arabidopsis thaliana OX=3702 GN=BTAF1 PE=1 SV=1
Length=2045
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 84/578 (15%), Positives = 177/578 (31%), Gaps = 73/578 (13%)
Query 242 KPRNYQLEL-----ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVF- 295
+ R YQ E L K + C G GKT + I + VF
Sbjct 1450 QLRRYQQEGINWLGFLKRFKLHGIL-CDDMGLGKTLQASAIVASDAAERRGSTDELDVFP 1508
Query 296 ---FANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILV 352
+ KY + V G+ + V + + N+++II + ++
Sbjct 1509 SIIVCPS-TLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLREQFNNHNVIITSYDVV- 1566
Query 353 NNLKKGTIPSLSIF--TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
+ + L+ F I DE H +I + L+
Sbjct 1567 ----RKDVDYLTQFSWNYCILDEGH---------IIKNAKSKITAAVKQLKAQHRLILSG 1613
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+ + D++ + + + + ++ K ++ ++
Sbjct 1614 TPIQNNIMELWSLFDFL------MPGFLGTERQFQASYGKPLLAARDP---KCSAKDAEA 1664
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
+ L + R K+ E LS + + + + V ++ K E
Sbjct 1665 GVLAMEALHKQVMPFLLRRTKE-EVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSSAKQE 1723
Query 531 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 590
S I K S D + AL YL S+ D++ + +
Sbjct 1724 ISSIIKVDGSADSG---NADVAPTKASTHVFQALQYLLKLCSHPLLVLGDKVTEPVASDL 1780
Query 591 EEKLQELESVSRDPSN--ENPKLEDLCFILQEEYHLNPET-----------ITILFVKTR 637
+ + + +PKL L IL+E + + ++F + +
Sbjct 1781 AAMINGCSDIITELHKVQHSPKLVALQEILEECGIGSDASSSDGTLSVGQHRVLIFAQHK 1840
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN-ILIA 696
AL+D ++ + + + L G + + I+ AF + + +L+
Sbjct 1841 ALLDIIEKDLFQ-AHMKSVTYMRLDGS--------VVPEKRFEIVKAFNSDPTIDVLLLT 1891
Query 697 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY 756
T V G+++ + ++ E+ N ++ Q R G K + +
Sbjct 1892 THVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHR----------LI 1941
Query 757 KEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQ 794
+ + ++ LQ + +V I K + Q
Sbjct 1942 MRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQ 1979
>sp|Q6CSW1|ROK1_KLULA ATP-dependent RNA helicase ROK1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=ROK1 PE=3 SV=1
Length=579
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/123 (23%), Positives = 46/123 (37%), Gaps = 18/123 (15%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTG 663
NE KL + ++ E P I+F+++ AL + + +
Sbjct 364 GNEEGKLIAIRQLVLEGEFKPP---VIIFLESITRAKALFHELLYDKLNVDVI------- 413
Query 664 RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
+ T + I++ FK SGD LI T V G+D NLVI Y+ +
Sbjct 414 ------HAERTQVQRDKIIERFK-SGDLWCLICTDVLARGVDFKGVNLVINYDVPRSAQA 466
Query 724 MIQ 726
+
Sbjct 467 YVH 469
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/140 (24%), Positives = 55/140 (39%), Gaps = 8/140 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
+P Q E + ++ I CAPTG GKT L+ + K + +
Sbjct 155 EPTPIQSESIPILLHERDMIACAPTGSGKTLAFLIPLLQQIINDKTTVGLKGLIISPTKE 214
Query 302 VYEQQKSVFSKYFE------RHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNN 354
+ Q SK + +V +S + + + + I E DIII TP L+
Sbjct 215 LANQIFIECSKLANKIYLDKKRPLQVALLSKSLSSKLKNKVISEDKYDIIISTPLRLITV 274
Query 355 LKKGTIPSLSIFTLMIFDEC 374
+++ + + L IFDE
Sbjct 275 VQEEALNLGKVKHL-IFDEA 293
>sp|Q8TFL3|DBP7_CANGA ATP-dependent RNA helicase DBP7 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP7 PE=3 SV=1
Length=715
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/130 (22%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query 638 ALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-----KASGDHN 692
V L +GN L +K L G + ++ + L F + G H
Sbjct 440 DSVRVLS---KGNKILPSIKDEELPGIICYKLHGSLSQQMRTMTLKHFATDSEQTKGKHL 496
Query 693 ILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNAGVIE 749
IL T VA G+D+ + VI ++ + + I R G L
Sbjct 497 ILFCTDVASRGLDLPDVSTVIEFDPPFAVEDHLHRIGRTARAGRSGEALLFLLPGEEEGY 556
Query 750 KEQINMYKEK 759
+ I Y K
Sbjct 557 LDYIQKYHPK 566
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 39/116 (34%), Gaps = 8/116 (7%)
Query 266 TGCGKTFVSLLICEHHL----KKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
TG GKT LL + + + A + Q V + Y V
Sbjct 175 TGSGKTLAYLLPIFSAILGMGDHIDRKSGCFALIIAPTRELASQIYHVTTMLANCCHYLV 234
Query 322 -TGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS---LSIFTLMIFDE 373
+ G + ++ + + II TP ++++ + + S ++ DE
Sbjct 235 PCLLIGGERKKSEKARLRKGCNFIIGTPGRILDHFQNTKVIKEQMQSSLRYVVLDE 290
>sp|Q4QJX4|UVRB_HAEI8 UvrABC system protein B OS=Haemophilus influenzae
(strain 86-028NP) OX=281310 GN=uvrB PE=3 SV=1
Length=679
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 64/456 (14%), Positives = 149/456 (33%), Gaps = 52/456 (11%)
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE 450
D G S G +P+ T + LD I + L + +K + E
Sbjct 232 FDPLTGSSFGAVPR---FTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEE 288
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
Q + + +F + + ++ Y E+ ++ + E
Sbjct 289 QRISQRTQF----DIEMMNELGYC-----SGIENYSRYLSGRNEGEPP---PTLFDYMPS 336
Query 511 QWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
I+ + ++ + M D + + + N L E R+ Y
Sbjct 337 DAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIY 396
Query 567 LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 626
+ D R L L + + +++DL ++ +
Sbjct 397 VSATPGPYELEKSGTEIIDQVVRPTGLLDPLIEIRP----VSIQVDDLLSEARQ--RADK 450
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++ T+ + + L ++++ + ++ L ++ + + I+ +
Sbjct 451 NERVLVTTLTKKMAEDLTDYLDEH----GIRVRYL--------HSDIDTVERVEIIRDLR 498
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFL 740
G+ ++L+ ++ EG+DI + +LV + + + +IQT GR R K L
Sbjct 499 L-GEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAIL 557
Query 741 LTSNAGVIEKEQI---NMYKEKM--MNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQE 795
+ ++ I N +EK N+ + E + Q + + +++
Sbjct 558 YADSITKSMEKAITETNRRREKQIKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQ 617
Query 796 KPKPVPDKENKKLLCRKCKALACYTADVRVIEECHY 831
+ K + L K Y ++ +E+ Y
Sbjct 618 RGKMAAE---PTALYNAPKNAKEYQQQIKKLEQQMY 650
>sp|B3H0F9|RAPA_ACTP7 RNA polymerase-associated protein RapA OS=Actinobacillus
pleuropneumoniae serotype 7 (strain AP76) OX=537457
GN=rapA PE=3 SV=1
Length=969
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 70/472 (15%), Positives = 165/472 (35%), Gaps = 59/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP----VYEQQKSVFSKYFERHGYRVT 322
G GKT + +I + L G+ +V+ + + E + K+ R +
Sbjct 178 GLGKTIEAGMILQQQL---FSGRVERVLVLVPESLQHQWLVEMLRRFNLKFSLFDEERCS 234
Query 323 GISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 381
A + V + ++ ++I + L ++ + S + ++I DE H+
Sbjct 235 DFDKADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---- 290
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
++ + Q + S P V+ LTA+ ++ + +L A LDA
Sbjct 291 AWSEDEPSVGYQFVERLSKQTPAVLLLTATPEQLGQES------HFARL-ALLDADRFYD 343
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC--KDLENLSQI 499
+ E QK ++ V ++ L D ++ + KD E + ++
Sbjct 344 YHSFIAE--------QKDYKPVADAVATLLND--KPLSHDEQNSIAELLSEKDTEPMFKV 393
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
N E +++ ++ V + + + R Y+
Sbjct 394 INSE-KSKENDRLQVRQELIRELIDRHGTSRVLFRNTRQGVKGFPHRVYHQIT------- 445
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L+ + + ++ G Q + E+L + + + ++ +P++E L L+
Sbjct 446 ----LEMPSQYTNALKVMGMMGGVTKDDQLYPERLFQRMNPAAKWADFDPRIEWLITFLK 501
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ ++ K AL+ + ++ + + M++ +
Sbjct 502 NH----RDEKILVICKQADTAIALEQILREREA---IRSAVF--------HEKMSIVERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + +LI++S+ EG + + ++L+ N + Q+ GR
Sbjct 547 RASAYFAQMEEGAQVLISSSIGSEGRNFQFASNLVLFNLPDNPDLLEQSIGR 598
>sp|Q0UG00|MS116_PHANO ATP-dependent RNA helicase MSS116, mitochondrial
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574
/ FGSC 10173) OX=321614 GN=MSS116 PE=3 SV=1
Length=550
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 46/128 (36%), Gaps = 13/128 (10%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
I +E + I+F T V L + + L + L ++ M+ P
Sbjct 321 IQEEHKQDPTDFKAIVFGTTANGVGLLYDLYKH--ALPQFRVFEL--------HSRMSQP 370
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-R 734
+ FK + IL A+ V G+D LV+ + + + GR RA +
Sbjct 371 MRTRTTAQFKEA-TSGILFASDVVGRGMDFPNVGLVVQLGLPSSTEQYVHRVGRTARAGK 429
Query 735 GSKCFLLT 742
+ L+
Sbjct 430 DGRAVLVL 437
Score = 50.2 bits (118), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 6/120 (5%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA--NQIPVYEQQKSVFSKYFE--R 316
++ A TG GKT LL +L +GKV + Q +
Sbjct 113 VVQAKTGTGKTVAFLLPAIQNLLAGNMPPRGKVAILVVCPTRELALQIAKECNGVTACLP 172
Query 317 HGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTI-PSLSIFTLMIFDEC 374
G T+ ++ + N I++ TP L + L + + + ++ DE
Sbjct 173 RKMECHTAFGGTSRASNLKAFLNGNPTILVATPGRLDDILGEEHVRERFTHLKTVVLDEA 232
>sp|A3MZ32|RAPA_ACTP2 RNA polymerase-associated protein RapA OS=Actinobacillus
pleuropneumoniae serotype 5b (strain L20) OX=416269
GN=rapA PE=3 SV=1
Length=969
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 70/472 (15%), Positives = 165/472 (35%), Gaps = 59/472 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP----VYEQQKSVFSKYFERHGYRVT 322
G GKT + +I + L G+ +V+ + + E + K+ R +
Sbjct 178 GLGKTIEAGMILQQQL---FSGRVERVLVLVPESLQHQWLVEMLRRFNLKFSLFDEERCS 234
Query 323 GISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH 381
A + V + ++ ++I + L ++ + S + ++I DE H+
Sbjct 235 DFDKADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASHWDMLIVDEAHHL---- 290
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
++ + Q + S P V+ LTA+ ++ + +L A LDA
Sbjct 291 AWSENEPSVGYQFVERLSKQTPAVLLLTATPEQLGQES------HFARL-ALLDADRFYD 343
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC--KDLENLSQI 499
+ E QK ++ V ++ L D ++ + KD E + ++
Sbjct 344 YHSFIAE--------QKDYKPVADAVATLLND--KPLSHDEQNSIAELLSEKDTEPMFKV 393
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
N E +++ ++ V + + + R Y+
Sbjct 394 INSE-KSKENDRLQVRQELIRELIDRHGTSRVLFRNTRQGVKGFPHRVYHQIT------- 445
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
L+ + + ++ G Q + E+L + + + ++ +P++E L L+
Sbjct 446 ----LEMPSQYTNALKVMGMMGGVTKDDQLYPERLFQRMNPAAKWADFDPRIEWLITFLK 501
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ ++ K AL+ + ++ + + M++ +
Sbjct 502 NH----RDEKILVICKQADTAIALEQILREREA---IRSAVF--------HEKMSIVERD 546
Query 680 CILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + +LI++S+ EG + + ++L+ N + Q+ GR
Sbjct 547 RASAYFAQMEEGAQVLISSSIGSEGRNFQFASNLVLFNLPDNPDLLEQSIGR 598
>sp|Q631I6|UVRB_BACCZ UvrABC system protein B OS=Bacillus cereus
(strain ZK / E33L) OX=288681 GN=uvrB PE=3 SV=1
Length=658
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 22/197 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ ++ T+ + + L ++++ G ++ + + I+
Sbjct 441 RIAKNERVLITTLTKKMSEDLTDYLKD------------VGIKVNYLHSEVKTLERIEII 488
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGS 736
+ G ++L+ ++ EG+DI + +LV + + + +IQT GR R
Sbjct 489 RDLRL-GKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENG 547
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ + A I + +E SI + + + I + E+
Sbjct 548 RVIM---YADRITRSMGIAIEETQRRRSIQEAYNEEYGITPKTIQKGVRDVIRATTAAEE 604
Query 797 PKPVPDKENKKLLCRKC 813
P+ KK+ ++
Sbjct 605 PETYEATPAKKMTKKER 621
>sp|Q5E881|RAPA_ALIF1 RNA polymerase-associated protein RapA OS=Aliivibrio
fischeri (strain ATCC 700601 / ES114) OX=312309
GN=rapA PE=3 SV=1
Length=952
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 63/473 (13%), Positives = 141/473 (30%), Gaps = 63/473 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + +I G+ +V+ + R +
Sbjct 180 GLGKTIEAGMIIHQQ---VLSGRAERVLIVVP---------ETLQHQWLVEMMRRFNLHF 227
Query 327 ATAENVPVEQIVENNDIIILTPQILV---NNLKKGTIPSLSIF----TLMIFDECHNTSK 379
+ + + +++ T Q ++ + ++K + L++ DE H+
Sbjct 228 SIFDEERCVEAYADSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEW 287
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
Y Q + + P V+ LTA+ + +L LD
Sbjct 288 NQ--TKPSREY--QVIEAIAEETPGVLLLTATP------EQLGHESHFARL-RLLDPDRF 336
Query 440 ATVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+EE Q + ++S+ K I +L+ + +D+E L +
Sbjct 337 YDYDAFVEEERQYQPVADAVTALMSGEKLSNDAKNRITELLSE---------QDVEPLFR 387
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
I + Q + M + A+ + + S++A
Sbjct 388 IIESSAAEDEQAQARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYA 447
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+ ++ A +++ Q FE S + + L
Sbjct 448 TSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE-----------GDSATWWQFDPRVNWL 496
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
E N ++ + L+ + ++ + + GM++ +
Sbjct 497 LELLKENRNEKVLIIASRASTALQLEQALRER---EGIRGTVF--------HEGMSIIER 545
Query 679 KCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 546 DKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|P58174|UVRB_MYCPU UvrABC system protein B OS=Mycoplasmopsis
pulmonis (strain UAB CTIP) OX=272635 GN=uvrB PE=3 SV=1
Length=657
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 70/416 (17%), Positives = 128/416 (31%), Gaps = 43/416 (10%)
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQL-MRD 481
+D + K + + + + +V + ++ D F+ L M+
Sbjct 223 TIDPLNKTLKKRHKNYLIFPANAYSTNKDIVSRVVLQVKEELIDRLDYFEKNNKLLEMQR 282
Query 482 TESLAKRICKDLENLS-----QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 536
E K LE + R ++ + T+ + DE +
Sbjct 283 LEQRVKSDMDSLEEFGICSGIENYARYIDGREQGEKPYTLLDYLPEEALVFIDESHMMVP 342
Query 537 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF---------DEIEQDLT 587
L + R ++ R+ ALD FS F E E +
Sbjct 343 QLNAMFNGDRS-RKQNLVDYGFRLPSALDNRPLTFSEFEEYKFPKIYISATPSEYEIEKA 401
Query 588 QRFEEKLQELESVSRDPSNEN-PKLEDLCFILQE-EYHLNPETITILFVKTRALVDALKN 645
+ K+ + DP E K + I E + T++ T+ + L
Sbjct 402 DQKITKMIIRPTGLLDPIIETRSKTNQVEDIYDELQKQKAKNERTLILTTTKRFSEELTR 461
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ + G ++ + IL + G ++++I ++ EGID
Sbjct 462 YFQEK------------GEKVAYIHSDHKTFERNEILRKLR-KGVYDLVIGINLLREGID 508
Query 706 IAQCNLVILYEYVG-----NVIKMIQTRGRG-RARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ + +LVI+ + N +IQ GR R K +E I EK
Sbjct 509 LPEVSLVIILDADKESFLRNTKSLIQIVGRASRNSSGKVIFYADFVSKSMRETIEDNFEK 568
Query 760 M------MNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
+ + QT + + H H S EK KE +KL+
Sbjct 569 RQIQIQYNKEHGIVPQTIIKDIPEPIEGHGFEHSIEYFLSNEKKSKAQLKEKEKLI 624
>sp|O27830|HELX_METTH Uncharacterized ATP-dependent helicase MTH_1802
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420
GN=MTH_1802 PE=3 SV=1
Length=862
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/378 (14%), Positives = 117/378 (31%), Gaps = 45/378 (12%)
Query 411 SVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
S G K L I +L D + + + + + +E + +
Sbjct 53 SSPTGSGKTLTAFLSIISELTRLADDGELEDSVYCI-----YISPLKALDNDIERNLEEP 107
Query 471 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE 530
I + L R + + + + I T + ++ P E
Sbjct 108 LSAIRDIAAGEGRDLEIRKAVRTGDTTSYERSRMLKKPPHILITTPETLSILLVAPKFRE 167
Query 531 ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRF 590
+ + + + H N + +L+ L+ + G L +
Sbjct 168 KLSTVRYVIVDEIHSLADNK-----RGVHLSLSLERLQHLVGDFTRIGLSATVHPLERVA 222
Query 591 EEKL-----QELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT--------------- 630
+ E E + D S DL + + +PE I
Sbjct 223 RFLVGYSYGSERECLIVDVSYLKELDIDLICPVDDIVAADPEEIGNALYDILHDLIEDHR 282
Query 631 --ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F TR+ +++ ++ S+ I+ ++ + + K
Sbjct 283 TTLIFTNTRSGTESVVYNLKSRFPESYSDSNIMAHHSS------LSREIRLETEEKLKR- 335
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA----RGSKCFLLTSN 744
G+ +++++ + GIDI +LV+L +V + +Q GR R ++
Sbjct 336 GELKAVVSSTSLELGIDIGYIDLVVLLSSPKSVSRALQRIGRSGHQLHQRSKGRIVVVDR 395
Query 745 AGVIEKEQI--NMYKEKM 760
++E I N + K+
Sbjct 396 DDLVECSLILKNALEGKI 413
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 49/348 (14%), Positives = 114/348 (33%), Gaps = 24/348 (7%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFP----QGQKGKVVFFANQIPV-------YE 304
+G+N ++ +PTG GKT + L L + ++ + + E
Sbjct 46 RGRNVLVSSPTGSGKTLTAFLSIISELTRLADDGELEDSVYCIYISPLKALDNDIERNLE 105
Query 305 QQKSVFSKYFERHG----YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GT 359
+ S G R +G T + + I+I TP+ L L
Sbjct 106 EPLSAIRDIAAGEGRDLEIRKAVRTGDTTSYERSRMLKKPPHILITTPETLSILLVAPKF 165
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS--VGVGDA 417
LS +I DE H+ + + + ++L G ++ GL+A+ A
Sbjct 166 REKLSTVRYVIVDEIHSLADN--KRGVHLSLSLERLQHLVGDFTRI-GLSATVHPLERVA 222
Query 418 KNTDEALDYICKLCASLDASVIATVKHNL--EELEQVVYKPQKFFRKVESRISDKFKYII 475
+ + C +D S + + +L + V P++ + + D +
Sbjct 223 RFLVGYSYGSERECLIVDVSYLKELDIDLICPVDDIVAADPEEIGNALYDILHDLIEDHR 282
Query 476 AQLM-RDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRI 534
L+ +T S + + +L++ + + + + ++ + ++ +
Sbjct 283 TTLIFTNTRSGTESVVYNLKSRFPESYSDSNIMAHHSSLSREIRLETEEKLKRGELKAVV 342
Query 535 CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
+ + +++S + AL + + I
Sbjct 343 SSTSLELGIDIGYIDLVVLLSSPKSVSRALQRIGRSGHQLHQRSKGRI 390
>sp|C0Q5F4|RAPA_SALPC RNA polymerase-associated protein RapA OS=Salmonella
paratyphi C (strain RKS4594) OX=476213 GN=rapA
PE=3 SV=1
Length=968
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICTKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A1JJG0|RAPA_YERE8 RNA polymerase-associated protein RapA OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain
NCTC 13174 / 8081) OX=393305 GN=rapA PE=3 SV=1
Length=968
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +++ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LSGRAERILIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ E ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSTNPFETEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ + + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFINE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELINEQDIEPLLKAANSQTEDSEAARQELVTMLMDRHG----TSRILF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKSLEARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLIANRNEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q18212|DX39B_CAEEL Spliceosome RNA helicase DDX39B homolog
OS=Caenorhabditis elegans OX=6239 GN=hel-1 PE=1 SV=1
Length=425
Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 52/154 (34%), Gaps = 17/154 (11%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
E K L +L ++FVK +AL +
Sbjct 266 KEAEKNRRLLNLLDALEF----NQVVIFVKAVKRCEALHQLLTEQ------------NFP 309
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ M + AFK IL+AT + G+DI + N+V Y+ + +
Sbjct 310 SIAIHRQMAQEERLSRYQAFK-DFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYL 368
Query 726 QTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
R G+K +T + + + +N +++
Sbjct 369 HRVARAGRFGTKGLAITFVSDENDAKTLNSVQDR 402
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 54/143 (38%), Gaps = 9/143 (6%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V ++ L+ P + VV +
Sbjct 63 HPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLE--PVDGEVSVVCMCHTRE 120
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKK 357
+ Q + FSKY G +V G A E++ + I++ TP ++ L +
Sbjct 121 LAFQISKEYERFSKYLP--GVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRML-ALAR 177
Query 358 GTIPSLSIFTLMIFDECHNTSKQ 380
L + DEC
Sbjct 178 SGKLKLDKVKYFVLDECDKMIGD 200
>sp|Q9VSE2|HELQ_DROME Helicase POLQ-like OS=Drosophila melanogaster
OX=7227 GN=mus301 PE=1 SV=1
Length=1051
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 61/166 (37%), Gaps = 25/166 (15%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSV---FSKYF 314
KN I PT GKT V+ ++ L ++ V+F + + +++ S F+
Sbjct 281 KNLIYALPTSGGKTLVAEILMLREL----LCRERNVLFILPYVSIVQEKVSAMSPFAIDL 336
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTP----QILVNNLKKGTIPSLSIFTLMI 370
+ T G + + +L+++L + L++
Sbjct 337 DFIVEEYTAGKGKCPPQPR-----RKRRSLFIASIEKGAVLMDSLI--DVQRPHEIGLVV 389
Query 371 FDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
DE H + +L + + ++ Q++G++A++G
Sbjct 390 VDELHLIGEKGRGATLE---AFLTKVMFLNANI--QIVGMSATIGN 430
Score = 37.8 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 23/155 (15%), Positives = 52/155 (34%), Gaps = 33/155 (21%)
Query 626 PETITILFVKTR----ALVDALKNWIEGNPKLSFLK-------------PGILTG----- 663
PE ++F +R + L + + + GIL+
Sbjct 507 PEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKT 566
Query 664 --RGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL------- 714
G ++G+T +K I A++ G ++ TS G+++ ++I
Sbjct 567 LPYGIAYHHSGLTTDERKYIETAYRF-GVVTVICCTSTLAAGVNLPAKRVIIRAPYVGQE 625
Query 715 YEYVGNVIKMIQTRGRGR-ARGSKCFLLTSNAGVI 748
+ + +M+ GR + L+ + +
Sbjct 626 FLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNL 660
>sp|C6DEY0|RAPA_PECCP RNA polymerase-associated protein RapA OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1)
OX=561230 GN=rapA PE=3 SV=1
Length=967
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 69/492 (14%), Positives = 150/492 (30%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 157 QLHIAHEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRASRVLIIVPE----T 209
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R + ++ E ++I + + N ++
Sbjct 210 LQHQWLVEMLRRFNLLFSLFDDERYAEAKLDSSNPFETEQLVICSLGFVQRNAQRFAQLV 269
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S++ P Q + + P V+ LTA+ ++
Sbjct 270 NADWDLLVVDEAHHLVWSEESPSAE------YQAVETLARATPAVLLLTATPEQLGQQS- 322
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
+ +L LD + + L E Q+ +R V ++ AQ
Sbjct 323 -----HFARL-RLLDPNRFHDYQEFLAE--------QQQYRPVADAVTLLLAGEKAQTAE 368
Query 481 DTESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L + N + QK Q ++ + + K
Sbjct 369 LNALSDLLGEQDIEPLLKAINSDSDDNQKARQELIAMLMDRHGTSRVLFRNTRQGVK--G 426
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
L + L +K + + VRA EQ Q +
Sbjct 427 FPQRILHQIRLPLPSQYQTAIKVSGIMNANKTLEVRARDMLYPEQIYQQLEGD------- 479
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ L N + ++ A L+ + ++
Sbjct 480 -----DATWWNFDPRVEWLLNYLTANRDEKVLVICAQAATALQLEQVLRTREA---IRAA 531
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYV 718
+ + G+++ + F + + +LI + + EG + + +++++
Sbjct 532 VF--------HEGLSILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLP 583
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 584 FNPDLLEQRIGR 595
>sp|Q6LV34|RAPA_PHOPR RNA polymerase-associated protein RapA OS=Photobacterium
profundum (strain SS9) OX=298386 GN=rapA PE=3
SV=1
Length=972
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 69/474 (15%), Positives = 147/474 (31%), Gaps = 64/474 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLAGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQ 380
S A A N E ++ + L + ++ + + L++ DE H+ S+
Sbjct 236 VESLADATNP-----FETAQYVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSED 290
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
P Q + + P V+ LTA+ ++ + +L LD
Sbjct 291 KPSRQ------YQVVEALAEATPGVLLLTATPEQLGRES------HFARL-RLLDPDRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+EE Q + R + +I D + + L+ + +D+E ++
Sbjct 338 DYDTFVEEERQYAPVAEAVTRLLSGEKIDDNARKTLVDLLSE---------QDIEPKLRL 388
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKAL--FLYTSHLRKYNDALIISEH 557
++ Q + ++ + R +A HL Y L S++
Sbjct 389 IESSDADDEHAQTVRHELIDSLMDRHGTGRVLFRNTRAAIKGFPERHLNMYPLELP-SQY 447
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
+ S + A +D+ Q FE S +
Sbjct 448 KTAMRVSSMMSGSISAEQKAIKLLYPEDIYQEFE-----------GESATWWNFDPRVNW 496
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E N ++ L+ + ++ + + GM++
Sbjct 497 LLEMLKANRNEKVLVICSRAQTALTLEQALRER---EGIRATVF--------HEGMSIID 545
Query 678 QKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + +L+ + + EG + N +++++ N + Q GR
Sbjct 546 RDKAAAYFAQEDDGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGR 599
>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia
typhi (strain ATCC VR-144 / Wilmington) OX=257363
GN=mfd PE=3 SV=1
Length=1120
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 44/249 (18%)
Query 261 IICAPTGCGKTFVSL----LICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
+IC G GKT V++ ++ + + PQ V + Q S F + F+
Sbjct 601 LICGDVGFGKTEVAMRAVFMVAKSLNEYLPQ-----VAVVVPTTILCSQHFSRFIERFKG 655
Query 317 HGYRVTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
G + +S + + +E +III T +L N+K L+I D
Sbjct 656 FGLNIKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIK--FFN----LKLLIID 709
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E + F ++ S V+ ++A+ + +L + +L
Sbjct 710 EEQH-----------FGVSQKEFLKSLKYSSHVLAMSATPI---PRTLQMSLTGLKEL-- 753
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF----KYIIAQLMRDTESLAKR 488
S+IAT N E+ V P ++ + + F + + ++D E + K+
Sbjct 754 ----SIIATPPLNRLEVRTSV-MPFDTVIIRDALLREHFRGGRSFYVVPRIKDMEDIEKQ 808
Query 489 ICKDLENLS 497
+ + + LS
Sbjct 809 LKQIVPELS 817
Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 44/96 (46%), Gaps = 3/96 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ MT ++ F +G +ILI+T++ + GIDI + N +I++ + ++ Q R
Sbjct 822 HGKMTPSKIDEVMSEF-YAGKFDILISTTIIESGIDITEANTMIIHNADTLGLSQLYQLR 880
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR GR + LT + + E + N
Sbjct 881 GRIGRGKIRGYAYLTVASNKKLMQHSLRRLEIIQNS 916
>sp|Q5BFU1|DBP4_EMENI ATP-dependent RNA helicase dbp4 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL
194 / M139) OX=227321 GN=dbp4 PE=3 SV=1
Length=812
Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/130 (18%), Positives = 49/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ +L + + + + +
Sbjct 75 QSRAISHALKGRDVLGAAKTGSGKTLAFLVPILENLYRKQWSDHDGLGALIISPTRELAI 134
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K H + + G ++ + +I++ TP ++ +L +
Sbjct 135 QIFEVLRKIGRYHTFSAGLVIGG-KSLKEEQERLGRMNILVCTPGRMLQHLDQTAFFETY 193
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 194 NLQMLVLDEA 203
Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/408 (16%), Positives = 135/408 (33%), Gaps = 41/408 (10%)
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQV 452
+ P + GLT+S A+ + K L A+ + + L +
Sbjct 48 ESFSDLPISEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAK----TGSGKTLAFL 103
Query 453 VYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQK 508
V + +RK S + A ++ T LA +I + L + + G +
Sbjct 104 VPILENLYRKQWS----DHDGLGALIISPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKS 159
Query 509 YEQWIVTVQKACMVFQMPDKDEESRICKALFL-YTSHLRKYNDALIISEHARMKDALDYL 567
++ + + ++ P + + A F Y + ++A I + K +
Sbjct 160 LKEEQERLGRMNILVCTPGRMLQHLDQTAFFETYNLQMLVLDEADRIMDMGFQKTVDAII 219
Query 568 KDFFSNVRAAGFDEIE-QDLTQRFEEKLQELESVSRDPSNENPKLEDLCF---------- 616
+ F + + ++ LQ+ E V+ + + L
Sbjct 220 GHLPPERQTLLFSATQTKKVSDLARLSLQDPEYVAVHEAASSATPSKLQQHYVVTPLPQK 279
Query 617 --ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L N ++ TI+F+ + V + ++PGI Q G
Sbjct 280 LDTLWSFIRSNLKSKTIVFMSSGKQVRFV------YESFRHMQPGIPLLHLHGRQKQG-- 331
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR- 732
+ I F + H +L +T VA G+D + VI + + I GR R
Sbjct 332 --GRLDITTRF-SQAQHAVLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARY 388
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKI 780
R + L + EK + ++K + + ++ + + ++
Sbjct 389 ERDGRAVLFLDPSE--EKGMLRRLEQKRVTVERINVRANKQQSIKNQL 434
>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia
bellii (strain RML369-C) OX=336407 GN=mfd PE=3 SV=1
Length=1120
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 34/241 (14%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
+IC G GKT V+ + + K +V + Q + F++ F+
Sbjct 601 LICGDVGFGKTEVA-MRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLN 659
Query 321 VTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD-ECH 375
+ +S + V E +III T +L + L+I D E H
Sbjct 660 IKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHK------VTKFCNLKLLIIDEEQH 713
Query 376 NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD 435
Q +L + V+ ++A+ + ++ + +L
Sbjct 714 FGVGQ-------KEFLKSLKSST-----HVLAMSATPI---PRTLQMSMTGLKEL----- 753
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
S+IAT N E+ V P ++ + + F+ + + + + I K L+
Sbjct 754 -SIIATPPLNRLEVRTSV-MPFDPVIIRDALLHEHFRGGKSFFVVPRINDIEDIEKQLKQ 811
Query 496 L 496
+
Sbjct 812 I 812
Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 31/271 (11%)
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
+ ++ + ++ + + + + ++ I L+ LII E
Sbjct 652 RFKDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEE 711
Query 558 ARM-KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
++LK S+ T + + S+ P ++
Sbjct 712 QHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771
Query 617 ----------ILQEEYHLNPETITILFVKTRALVDALKNWIEGN-PKLSFLKPGILTGRG 665
+L E + V ++ ++ ++ P+LS+
Sbjct 772 PFDPVIIRDALLHEHFRGGKSFFV---VPRINDIEDIEKQLKQIVPELSY---------- 818
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY----VGNV 721
+ M+ I+ F +G +ILI+T++ + GIDI N +I+++ + +
Sbjct 819 -KVAHGKMSPNKIDEIMSEF-YAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQL 876
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQ 752
++ GRG+ RG L S+ +
Sbjct 877 YQLRGRIGRGKMRGYAYLTLPSHKKMTPHSL 907
>sp|B5FGE9|RAPA_ALIFM RNA polymerase-associated protein RapA OS=Aliivibrio
fischeri (strain MJ11) OX=388396 GN=rapA PE=3 SV=1
Length=969
Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 63/473 (13%), Positives = 141/473 (30%), Gaps = 63/473 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + +I G+ +V+ + R +
Sbjct 180 GLGKTIEAGMIIHQQ---VLSGRAERVLIVVP---------ETLQHQWLVEMMRRFNLHF 227
Query 327 ATAENVPVEQIVENNDIIILTPQILV---NNLKKGTIPSLSIF----TLMIFDECHNTSK 379
+ + + +++ T Q ++ + ++K + L++ DE H+
Sbjct 228 SIFDEERCVEAYADSENPFDTAQFVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEW 287
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
Y Q + + P V+ LTA+ + +L LD
Sbjct 288 NQ--TKPSREY--QVIEAIAEETPGVLLLTATP------EQLGHESHFARL-RLLDPDRF 336
Query 440 ATVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+EE Q + ++S+ K I +L+ + +D+E L +
Sbjct 337 YDYDAFVEEERQYQPVADAVTALMSGEKLSNDAKNRITELLSE---------QDVEPLFR 387
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
I + Q + M + A+ + + S++A
Sbjct 388 IIESSAAEDEQAQARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYA 447
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
+ ++ A +++ Q FE S + + L
Sbjct 448 TSMRVATMMGGRMTDEARAMKMLYPEEIFQEFE-----------GDSATWWQFDPRVNWL 496
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
E N ++ + L+ + ++ + + GM++ +
Sbjct 497 LELLKENRNEKVLIIASRASTALQLEQALRER---EGIRGTVF--------HEGMSIIER 545
Query 679 KCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +LI + + EG + N +++++ N + Q GR
Sbjct 546 DKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|A7TPC9|DBP9_VANPO ATP-dependent RNA helicase DBP9 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP9 PE=3 SV=2
Length=597
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/220 (18%), Positives = 76/220 (35%), Gaps = 29/220 (13%)
Query 250 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--------VFFANQIP 301
+ L + ++ I A TGCGKT L+ + + + K+ +
Sbjct 48 IPLALQEKRDIIAKAATGCGKTLAYLIPVIQTILDYKKTNTDKIDGTSNTLGIILVPTRE 107
Query 302 VYEQQKSVFSKYFERHGYRVTGI--SGATAENVPVEQIVENNDIIILTPQILVNNL-KKG 358
+ +Q V K + + S +V ++E +III TP L+ L
Sbjct 108 LAQQVNDVLDKMILYCSNDIRSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNV 167
Query 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP-----QVIGLTASVG 413
SL ++ DE ++++ + L + LP Q ++A++
Sbjct 168 ESVSLEELKFLVIDEV---------DLVLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLN 218
Query 414 VGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVV 453
+ E C+ A L + K + ++ V
Sbjct 219 ----DDIQELKKEFCRAPAILKFNDDEISKDKNKLIQYYV 254
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 13/45 (29%), Gaps = 3/45 (7%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLT 742
G+D V+ ++ + G R G+ +
Sbjct 385 SRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKTGTAISFVV 429
>sp|Q4P5U4|DBP4_USTMA ATP-dependent RNA helicase DBP4 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP4 PE=3 SV=2
Length=916
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (40%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFS 311
++KGK+ + A TG GKT L+ L + G + + + + Q V
Sbjct 92 SLKGKDVLGAARTGSGKTLAFLIPVLEILYRRKWGPSDGLGALVISPTRELAIQIFEVLR 151
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K H + + G + + + +I+I TP L+ ++ + S +++
Sbjct 152 KIGSYHTFSAGLVIGG-KDVKQEKDRLSRINILIATPGRLLQHMDQTLGFDTSNVQVLVL 210
Query 372 DEC 374
DE
Sbjct 211 DEA 213
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 71/219 (32%), Gaps = 16/219 (7%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+LE +L + + ++F+ + V + + L+PG+
Sbjct 286 ELEKKLDLLFSFIRTHTKCKALVFMSSCRQVQFV------HETFCKLRPGV----SLMAL 335
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + I F + H +L AT +A G+D + VI + +V I G
Sbjct 336 HGKQKQAKRLQIFTQFTKT-QHALLFATDIAARGLDFPAVDWVIQLDVPEDVDTYIHRVG 394
Query 730 R-----GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
R + L + G++E + + Q+ + Q
Sbjct 395 RTARYTAKGNSLLFVLPSEEKGILEALATKNIAIGRIKPKESKTQSIQNQLQAFAFQEPQ 454
Query 785 THEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADV 823
+ + + ++NK++ AL + A +
Sbjct 455 IKHLAQKAFVSYVRSIHLQKNKEIFDVTALALEPFAAAL 493
>sp|B7V6T4|RAPA_PSEA8 RNA polymerase-associated protein RapA OS=Pseudomonas
aeruginosa (strain LESB58) OX=557722 GN=rapA PE=3
SV=1
Length=950
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/540 (11%), Positives = 156/540 (29%), Gaps = 77/540 (14%)
Query 242 KPRNYQLELALPAMK--GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
+P +QL +A ++ G GKT + LI L G+ G+V+
Sbjct 154 QPIAHQLHIAREVADRMAPRVLLADEVGLGKTIEAGLIIHRQL---LSGRAGRVLILVP- 209
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q + F +V E+ + ++ + L + +
Sbjct 210 ENLQHQWLVEMRRRFN---LQVALFDKERFAESDASNPFEDTQLALVALEWLKEDERAQD 266
Query 360 IPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ + L++ DE H+ + + + +P V+ LTA+
Sbjct 267 ALFAAGWDLLVVDEAHHLVWHQDQVSAE------YALVEQLAEIIPGVLLLTATP----- 315
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF--KYII 475
+L + + + N + + + +R V + + +
Sbjct 316 ----------EQLGQDSHFARLRLLDPNRFHDLEAFRRESEQYRPVAEAVQELLDHGSLS 365
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
A + +L + + E ++ + + ++F+ +
Sbjct 366 AGARKAIHGFLGSEGDELLASVEGGDEEARSRLVRELLDRHGTGRVLFRNTRAAVQGFPQ 425
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ L Y + + L EH + +++ + + +
Sbjct 426 RELHAYPLPMPSQYEELPAGEHPDLYPEVNFQQQWEDGDDNNRW---------------- 469
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+ + L + + + ++ L++ +
Sbjct 470 -------------WRFDPRVEWLIDTLKMLKQFKVLVICAHAETALDLEDALRLR----- 511
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGIDIAQCNLVIL 714
+G T + GM++ + F +LI + + EG + + ++L
Sbjct 512 ------SGISATVFHEGMSILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVL 565
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
++ + + Q GR G + + + Q +++ + ++
Sbjct 566 FDLPAHPDLLEQRIGRLDRIGQRHTIQLHVPHLENSAQQRLFQW--YHQALNAFLNTCPT 623
>sp|Q8Z9J4|RAPA_SALTI RNA polymerase-associated protein RapA OS=Salmonella
typhi OX=90370 GN=rapA PE=3 SV=3
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B4TWU3|RAPA_SALSV RNA polymerase-associated protein RapA OS=Salmonella
schwarzengrund (strain CVM19633) OX=439843 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B5BL33|RAPA_SALPK RNA polymerase-associated protein RapA OS=Salmonella
paratyphi A (strain AKU_12601) OX=554290 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A9MYN1|RAPA_SALPB RNA polymerase-associated protein RapA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) OX=1016998
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q5PDF0|RAPA_SALPA RNA polymerase-associated protein RapA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) OX=295319
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B5R1T4|RAPA_SALEP RNA polymerase-associated protein RapA OS=Salmonella
enteritidis PT4 (strain P125109) OX=550537 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B5FI41|RAPA_SALDC RNA polymerase-associated protein RapA OS=Salmonella
dublin (strain CT_02021853) OX=439851 GN=rapA PE=3
SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B5F778|RAPA_SALA4 RNA polymerase-associated protein RapA OS=Salmonella
agona (strain SL483) OX=454166 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q9UTP9|DBP4_SCHPO ATP-dependent RNA helicase dbp4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) OX=284812 GN=dbp4
PE=1 SV=1
Length=735
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 49/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q + A+KG++ + A TG GKT ++ +L + + + +
Sbjct 66 QKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAI 125
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q K H + I G E+ + +I++ TP L+ ++ + S
Sbjct 126 QTFETLVKIGRLHSFSAGLIIGGNNYKEEKER-LSRMNILVCTPGRLLQHIDQAVNFDTS 184
Query 365 IFTLMIFDEC 374
++I DE
Sbjct 185 GLQMLILDEA 194
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/179 (21%), Positives = 58/179 (32%), Gaps = 19/179 (11%)
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN------PKLEDLCFILQEEYHL 624
FS + ++ + Q + S PSN N P E L IL
Sbjct 222 FSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKL-DILFGFIRT 280
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ + TI+F+ + K ++PGI Q + +
Sbjct 281 HLKFKTIVFL------SSCKQVRFVYETFRRMRPGISLLHLHGKQ----KQTTRTEVTAK 330
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 742
F +S +L T + G+D + VI + +V I GR R S LL
Sbjct 331 FTSSRHV-VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLL 388
>sp|A1DMT9|MAK5_NEOFI ATP-dependent RNA helicase mak5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=mak5
PE=3 SV=1
Length=777
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/123 (24%), Positives = 44/123 (36%), Gaps = 15/123 (12%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L +P+ T++F + + V K ++ M
Sbjct 496 FLYTLLLYHPKHRTLVFTNSISAVR------------RLTKLLQTLQLPALALHSSMAQK 543
Query 677 AQKCILDAFKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
A+ ++ F + S IL+AT VA G+DI NLVI Y + GR RA
Sbjct 544 ARLRSVERFSSPSSDPSTILVATDVAARGLDIKGINLVIHYHAPRTADTYVHRSGRTARA 603
Query 734 RGS 736
S
Sbjct 604 GAS 606
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/138 (20%), Positives = 52/138 (38%), Gaps = 19/138 (14%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFP-------QGQKGK-----VVFFANQIP 301
++G + I A TG GKT + I EH+L+K + + K + +
Sbjct 236 LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAEKEKKSEKDSTPIALILSPTRE 295
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q R+ ++G + ++++ DI+I TP + L
Sbjct 296 LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG 354
Query 357 KGTIPSLSIFTLMIFDEC 374
+G I + ++ DE
Sbjct 355 QGLIRKMQQIKFLVVDEA 372
>sp|B4SU17|RAPA_SALNS RNA polymerase-associated protein RapA OS=Salmonella
newport (strain SL254) OX=423368 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q2UHB7|DBP4_ASPOR ATP-dependent RNA helicase dbp4 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=dbp4
PE=3 SV=1
Length=796
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ +L + + + +
Sbjct 72 QSRAIGHALKGRDILGAAKTGSGKTLAFLIPVLENLYRKQWSEHDGLGALILSPTRELAI 131
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K H + I G ++ + +I++ TP ++ +L + + +
Sbjct 132 QIFEVLRKIGRYHTFSAGLIIGG-KSLKEEQERLGRMNILVCTPGRMLQHLDQTAMFDVF 190
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 191 NLQMLVLDEA 200
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 23/183 (13%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
L +L N + TI+F+ + V + L+PGI Q
Sbjct 273 LSQKLDVLWSFIRSNLKAKTIVFLSSGKQVRFV------YESFRHLQPGIPLMHLHGRQK 326
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
G + I F + H +L +T + G+D + VI + + I GR
Sbjct 327 QG----GRLDITAKF-SQAKHAVLFSTDITARGLDFPAVDWVIQMDCPEDADTYIHRVGR 381
Query 731 -GR-ARGSKCFLLT----SNAGVIEKEQINMYKEKMMNDSIL------RLQTWDEAVFRE 778
R R + L + + EQ + E++ + +LQ
Sbjct 382 TARYERDGRAVLFLDPSEESGMLKRLEQKKVPIERINIKANKQQSIRDQLQNMCFKDPEL 441
Query 779 KIL 781
K L
Sbjct 442 KYL 444
>sp|Q57TG4|RAPA_SALCH RNA polymerase-associated protein RapA OS=Salmonella
choleraesuis (strain SC-B67) OX=321314 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A6R2L6|DBP9_AJECN ATP-dependent RNA helicase DBP9 OS=Ajellomyces
capsulatus (strain NAm1 / WU24) OX=2059318 GN=DBP9 PE=3
SV=1
Length=625
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/179 (20%), Positives = 70/179 (39%), Gaps = 19/179 (11%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKGKVV---FFA 297
KP Q E A+ GK+ + A TG GKT LL + + L++ K +
Sbjct 46 KPTPIQAEAIPLALDGKDVLARAKTGSGKTAAYLLPVLQSILQQKRNTPAHKSISALILV 105
Query 298 NQIPVYEQQKSVFSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ EQ + G V ++ ++ V + + DI++ TP V N+
Sbjct 106 PTRELAEQVHRTAISFSAFSGKHVRSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVANV 165
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
+ SL T ++ DE ++++ ++ + + +P+ ++A+
Sbjct 166 NSSAL-SLERLTHLVIDEA---------DLVLSYGYEEDMQSLAKAVPRGVQTFLMSAT 214
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/82 (16%), Positives = 25/82 (30%), Gaps = 7/82 (9%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLTSNAGVIEKEQINM-- 755
GID V+ ++ I GR G + + + + ++
Sbjct 396 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPS 455
Query 756 --YKEKMMNDSILRLQTWDEAV 775
+ E M++ I R V
Sbjct 456 AKHDEAMLSKIIKRQDKLGREV 477
>sp|A7ZW09|RAPA_ECOHS RNA polymerase-associated protein RapA OS=Escherichia
coli O9:H4 (strain HS) OX=331112 GN=rapA PE=3
SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7MNR6|RAPA_ECO81 RNA polymerase-associated protein RapA OS=Escherichia
coli O81 (strain ED1a) OX=585397 GN=rapA PE=3
SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q3Z5V2|RAPA_SHISS RNA polymerase-associated protein RapA OS=Shigella
sonnei (strain Ss046) OX=300269 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q9HYT6|RAPA_PSEAE RNA polymerase-associated protein RapA OS=Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP
104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964
GN=rapA PE=3 SV=1
Length=950
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/540 (11%), Positives = 156/540 (29%), Gaps = 77/540 (14%)
Query 242 KPRNYQLELALPAMK--GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
+P +QL +A ++ G GKT + LI L G+ G+V+
Sbjct 154 QPIAHQLHIAREVADRMAPRVLLADEVGLGKTIEAGLIIHRQL---LSGRAGRVLILVP- 209
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ Q + F +V E+ + ++ + L + +
Sbjct 210 ENLQHQWLVEMRRRFN---LQVALFDKERFAESDASNPFEDTQLALVALEWLKEDERAQD 266
Query 360 IPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDA 417
+ + L++ DE H+ + + + +P V+ LTA+
Sbjct 267 ALFAAGWDLLVVDEAHHLVWHQDQVSAE------YALVEQLAEIIPGVLLLTATP----- 315
Query 418 KNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF--KYII 475
+L + + + N + + + +R V + + +
Sbjct 316 ----------EQLGQDSHFARLRLLDPNRFHDLEAFRRESEQYRPVAEAVQELLDHGSLS 365
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 535
A + +L + + E ++ + + ++F+ +
Sbjct 366 AGARKAIHGFLGSEGDELLASVEGGDEEARSRLVRELLDRHGTGRVLFRNTRAAVQGFPQ 425
Query 536 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 595
+ L Y + + L EH + +++ + + +
Sbjct 426 RELHAYPLPMPSQYEELPAGEHPDLYPEVNFQQQWEDGDDNNRW---------------- 469
Query 596 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 655
+ + L + + + ++ L++ +
Sbjct 470 -------------WRFDPRVEWLIDTLKMLKQFKVLVICAHAETALDLEDALRLR----- 511
Query 656 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGIDIAQCNLVIL 714
+G T + GM++ + F +LI + + EG + + ++L
Sbjct 512 ------SGISATVFHEGMSILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVL 565
Query 715 YEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
++ + + Q GR G + + + Q +++ + ++
Sbjct 566 FDLPAHPDLLEQRIGRLDRIGQRHTIQLHVPHLENSAQQRLFQW--YHQALNAFLNTCPT 623
>sp|Q1RGE0|RAPA_ECOUT RNA polymerase-associated protein RapA OS=Escherichia
coli (strain UTI89 / UPEC) OX=364106 GN=rapA PE=3
SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B6HZ39|RAPA_ECOSE RNA polymerase-associated protein RapA OS=Escherichia
coli (strain SE11) OX=409438 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7N7T3|RAPA_ECOLU RNA polymerase-associated protein RapA OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) OX=585056
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|P60240|RAPA_ECOLI RNA polymerase-associated protein RapA OS=Escherichia
coli (strain K12) OX=83333 GN=rapA PE=1 SV=2
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B1IRB9|RAPA_ECOLC RNA polymerase-associated protein RapA OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / NBRC 3972
/ NCIMB 8545 / WDCM 00012 / Crooks) OX=481805 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|C4ZPY3|RAPA_ECOBW RNA polymerase-associated protein RapA OS=Escherichia
coli (strain K12 / MC4100 / BW2952) OX=595496
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|P60241|RAPA_ECO57 RNA polymerase-associated protein RapA OS=Escherichia
coli O157:H7 OX=83334 GN=rapA PE=3 SV=2
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7L4I0|RAPA_ECO55 RNA polymerase-associated protein RapA OS=Escherichia
coli (strain 55989 / EAEC) OX=585055 GN=rapA PE=3
SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7MAI2|RAPA_ECO45 RNA polymerase-associated protein RapA OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) OX=585035 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q2HCV7|ROK1_CHAGB ATP-dependent RNA helicase ROK1 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=ROK1 PE=3 SV=1
Length=667
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/102 (21%), Positives = 40/102 (39%), Gaps = 5/102 (5%)
Query 650 NPKLSFLKPGILTGRGKTNQ-NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 708
+ +L + P G + ++ M A+ I+ F+A G+ +L+ T V G+D A
Sbjct 456 HDELKYDIPLEAGGSARVAVLHSSMADSARSKIMARFRA-GEVWVLVTTDVLARGVDFAG 514
Query 709 CNLVILYEYVGNVIKMIQ---TRGRGRARGSKCFLLTSNAGV 747
N V+ Y+ + + GR G + +
Sbjct 515 VNGVVNYDVPTSAAAYVHRAGRTGRAGREGGVAVTFYTKDDI 556
Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 51/164 (31%)
Query 261 IICAPTGCGKTFVSLLI--CEHHLKKFPQGQKG------KVVFFANQIPVYEQQKSVFSK 312
+ APTG GKT ++ LI + L++ + + + V A + Q + K
Sbjct 234 LAVAPTGSGKT-ITFLIPAIDGVLRRRAEEGRDTDQHVLEAVVVAPTRELATQIVNEGRK 292
Query 313 YFERHGYRVTGI---------------SGATAENVPVEQI-------------------- 337
G RV + S E EQ
Sbjct 293 LAIGTGVRVVLMKRALKLDVEEVADEKSKDLEEGSGSEQGSGDEESEGEEESEGEEGKTS 352
Query 338 -----VENNDIIILTPQILVNNL--KKGTIPSLSIFTLMIFDEC 374
+ DI++ TP+IL+N L K G L +I DE
Sbjct 353 KEAKPLARVDILVTTPKILLNFLSGKAGARRLLPSVRSLILDEA 396
>sp|B1LFZ3|RAPA_ECOSM RNA polymerase-associated protein RapA OS=Escherichia
coli (strain SMS-3-5 / SECEC) OX=439855 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q8FL92|RAPA_ECOL6 RNA polymerase-associated protein RapA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
OX=199310 GN=rapA PE=3 SV=3
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q0TLT1|RAPA_ECOL5 RNA polymerase-associated protein RapA OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) OX=362663
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7M0F4|RAPA_ECO8A RNA polymerase-associated protein RapA OS=Escherichia
coli O8 (strain IAI1) OX=585034 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7NHG5|RAPA_ECO7I RNA polymerase-associated protein RapA OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) OX=585057 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B7UIA5|RAPA_ECO27 RNA polymerase-associated protein RapA OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) OX=574521
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|A7ZHF0|RAPA_ECO24 RNA polymerase-associated protein RapA OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) OX=331111
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q7UDT5|RAPA_SHIFL RNA polymerase-associated protein RapA OS=Shigella
flexneri OX=623 GN=rapA PE=3 SV=3
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q0T8D8|RAPA_SHIF8 RNA polymerase-associated protein RapA OS=Shigella
flexneri serotype 5b (strain 8401) OX=373384 GN=rapA
PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B2U265|RAPA_SHIB3 RNA polymerase-associated protein RapA OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) OX=344609
GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|A1A7A6|RAPA_ECOK1 RNA polymerase-associated protein RapA OS=Escherichia
coli O1:K1 / APEC OX=405955 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q8GUG7|RH50_ARATH DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis
thaliana OX=3702 GN=RH50 PE=2 SV=2
Length=781
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 62/156 (40%), Gaps = 18/156 (12%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K L I++E NP + TI+F ++N + + + +L
Sbjct 622 KKTALLQIMEE----NPVSKTIIFCNKIETCRKVENIFKRVDR-KERQLHVL------PF 670
Query 670 NTGMTLPAQKCILDAFKASG-DHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
+ ++ ++ + F +S + N L+ T A GID + + V+L+++ + + ++
Sbjct 671 HAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVR 730
Query 727 TRGR----GRARGSKCFLLTSNAGVIEKEQINMYKE 758
GR R +G + + + I ++
Sbjct 731 RVGRTARGARGKGKAFIFVVGKQVGLARRIIERNEK 766
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (37%), Gaps = 9/136 (7%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLIC-----EHHLKKFPQGQKG--KVVFFANQ 299
Q P + GK+ II +G GKT L+ E L+ + G +V+
Sbjct 401 QAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPT 460
Query 300 IPVYEQQKSVFSKYFERHG-YRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG 358
+ Q + + +R ++G + +E + + D++I TP L
Sbjct 461 AELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRF-TYLMNE 519
Query 359 TIPSLSIFTLMIFDEC 374
I LS I DE
Sbjct 520 GILGLSNLRCAILDEV 535
>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC
15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451
GN=mfd PE=3 SV=1
Length=1170
Score = 64.4 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/347 (16%), Positives = 114/347 (33%), Gaps = 51/347 (15%)
Query 186 WIVEKGIKDVETEDLEDKM----ETSDIQIFYQEDPEC--QNLSENSCPPSEVSDTNLYS 239
W K ED+ D++ + ++ + Y+ P+ QN E P D +
Sbjct 570 WKKTKAKVQQSVEDMADELIELYKAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSI 629
Query 240 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 299
++ ++E + ++C G GKT V++ + +V F
Sbjct 630 EEIKQDMEIERPMDR------LLCGDVGYGKTEVAVRAA-----FKAVMEGKQVAFLVPT 678
Query 300 IPVYEQQKSVFSKYFERHGYRVTGIS--GATAENVPVEQIVEN--NDIIILTPQILVNNL 355
+ +Q + + V IS T E ++ +++ DI++ T ++L ++
Sbjct 679 TILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLGKDI 738
Query 356 KKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVG 415
+ L+I DE F ++ S V+ LTA+
Sbjct 739 QY------KDLGLLIVDEEQR-----------FGVRHKERIKSLKNNVDVLTLTATPI-- 779
Query 416 DAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 475
+ ++ + D SVI T N ++ V + F ++ + +
Sbjct 780 -PRTLHMSMLGVR------DLSVIETPPENRFPVQTYVLEQNTNF--IKEALERELSRDG 830
Query 476 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMV 522
+ + I + E L + + Q + M+
Sbjct 831 QVFY--LYNKVQSIYEKREQLQMLMPDANIGVAHGQMNERDLEETML 875
>sp|A7TJ71|DBP4_VANPO ATP-dependent RNA helicase DBP4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP4 PE=3 SV=1
Length=768
Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/257 (17%), Positives = 73/257 (28%), Gaps = 24/257 (9%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
+ + Q ++ G ++ + +A M K I L L
Sbjct 166 LIGTPGRILQHMDQAIGLNTSNLQMLVLDEADRCLDMGFKKTLDAIVSNLPPTRQTLLFS 225
Query 549 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 608
E DY L + L + S N
Sbjct 226 ATQSQSLEDLARLSLTDY-----------KTIGNPDILNPSNGKVLGPSTPETLQQSYIN 274
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
+L D +L + ++ I+F+ + K ++PGI
Sbjct 275 VELPDKLDMLYSFIKSHLKSKMIVFL------SSSKQVHFVYETFRKMQPGISLMHLHGR 328
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Q A+ LD F + L AT V GID + V+ + +V I
Sbjct 329 Q----KQKARTETLDKFNRAQHV-CLFATDVVARGIDFPAIDWVVQVDCPEDVDTYIHRV 383
Query 729 GR-GR-ARGSKCFLLTS 743
GR R + K ++ +
Sbjct 384 GRCARYGKQGKSMIMLT 400
Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/218 (16%), Positives = 80/218 (37%), Gaps = 22/218 (10%)
Query 162 SDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQN 221
+ K+ + T + L K+ + IK++E +++ + + +F+++ P
Sbjct 2 AKKQRYNTTQRKELRKKEVDY---------IKELE-TKIDEYDASINKPVFFKDLP---- 47
Query 222 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 281
S + N + K + Q + ++KG + + A TG GKT L+
Sbjct 48 -----ISNSTLKGLNDSAFLKLTDIQRDSIPMSLKGYDILGAAKTGSGKTLAFLIPVLEK 102
Query 282 LKKFPQG--QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVE 339
L + + + + Q V K + + G + + +
Sbjct 103 LYRERWTEFDGLGALIISPTRELAMQIYEVLLKIGTSTSFSAGLVIGG-KDVKFEMERIS 161
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 377
+I+I TP ++ ++ + + S +++ DE
Sbjct 162 KINILIGTPGRILQHMDQAIGLNTSNLQMLVLDEADRC 199
>sp|B7LVT0|RAPA_ESCF3 RNA polymerase-associated protein RapA OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CCUG
18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 /
NCTC 12128 / CDC 0568-73) OX=585054 GN=rapA PE=3 SV=1
Length=968
Score = 64.4 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 62/521 (12%), Positives = 143/521 (27%), Gaps = 85/521 (16%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHVPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
V + ++ + I Q + A +D Q
Sbjct 354 DAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSNSEDA-------------QSAR 400
Query 511 QWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDF 570
Q +V++ K H K ++ + K
Sbjct 401 QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK-- 458
Query 571 FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 630
S A + + Q FE + + L +
Sbjct 459 -SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQKV 506
Query 631 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KASG 689
++ A L+ + ++ + + GM++ + F +
Sbjct 507 LVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEEDT 555
Query 690 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 556 GAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|Q13206|DDX10_HUMAN Probable ATP-dependent RNA helicase DDX10
OS=Homo sapiens OX=9606 GN=DDX10 PE=1 SV=2
Length=875
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 50/123 (41%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVFS 311
A++GK+ + A TG GKT L+ L + V+ + + Q V
Sbjct 103 ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 162
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + H + I G + + + N +I++ TP L+ ++ + + +++
Sbjct 163 KVGKNHDFSAGLIIGG-KDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVL 221
Query 372 DEC 374
DE
Sbjct 222 DEA 224
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/135 (18%), Positives = 46/135 (34%), Gaps = 13/135 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
+L+ +L + + +I+F + V L L+PG+ Q
Sbjct 296 ELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCR------LRPGVSILALHGRQ 349
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + F +L AT +A G+D N V+ ++ + I G
Sbjct 350 ----QQMRRMEVYNEF-VRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAG 404
Query 730 R-GR-ARGSKCFLLT 742
R R + L+
Sbjct 405 RTARYKEDGEALLIL 419
>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borreliella
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532
/ B31) OX=224326 GN=recG PE=3 SV=1
Length=686
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 37/170 (22%), Positives = 60/170 (35%), Gaps = 31/170 (18%)
Query 252 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVF 310
L + K N ++ G GKT V+L L P + G +V F A + Q
Sbjct 278 LNSSKPMNRLLQGDVGSGKTLVAL------LSGLPLIEAGYQVAFMAPTDLLARQHYDNL 331
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENND-----IIILTPQILVNNLKKGTIPSLSI 365
S +T ++G+ EQ +E+ +I+ T I +
Sbjct 332 SNILAPFNISMTLLTGSLR-KKDKEQALESIRNGTSGLIVGTHAIFYES------TEFKR 384
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQK------LGGSSGPLPQVIGLT 409
+I DE H + ++ L K L S+ P+P+ LT
Sbjct 385 LAYVIIDEQHK------FGVVQREELKNKGEGVDMLLMSATPIPRSFALT 428
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 26/109 (24%), Positives = 41/109 (38%), Gaps = 22/109 (20%)
Query 679 KCILDAFKASGDHNILIATSVADEGIDIAQCNLVI-----LYEYVGNVIKMIQTRGRGRA 733
+ I+ F S +IL+ATSV + GID ++ + + Q RGR
Sbjct 522 EEIMKNF-YSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLST----LHQIRGRVGR 576
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILH 782
+ F +YKE + + RL+T E + KI
Sbjct 577 SNLQSFFFL------------LYKEPLTSAGKFRLKTIKENLDGFKIAE 613
>sp|Q821H8|UVRB_CHLCV UvrABC system protein B OS=Chlamydia caviae
(strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC) OX=227941
GN=uvrB PE=3 SV=1
Length=656
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 57/444 (13%), Positives = 135/444 (30%), Gaps = 43/444 (10%)
Query 386 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN 445
I + + L P LT A + A + ++ + +
Sbjct 209 IRLEFFNDTLSSIEYSDP----LTMIPTASVASTIIYPGSHYVTPEAVREQAICSIREEL 264
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
E + +P + R D + E+ ++ K ++
Sbjct 265 EERMLFFHDRPVEQDRLFHRTTHDIEMIKETGFCKGIENYSRHFTKMPPGAPPACLLDYF 324
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
E +++ + ++ + + L R + S + +
Sbjct 325 ---PEDFLLVIDESHQTLPQIRAMYRGDLSRKQSLVEYGFR------LPSAYDNRPLTYE 375
Query 566 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP------KLEDLCFILQ 619
+ +F NV E +L + ++++ + P +++DL ++
Sbjct 376 EAQKYFHNVIYVSATPGETELNESQGHIVEQIIRPTGIPDPIPEIRPATGQVDDLLEEIR 435
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ + E ++ T+ L + + ++ + L ++G+ +
Sbjct 436 KRLSKSQE-KILVISITKKLAEDIAAFLSELD----IAAAYL--------HSGIETAERT 482
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRA 733
IL + G+ ++LI ++ EG+D+ + +LV + + + +IQ GR R
Sbjct 483 RILADLRL-GNIDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSTSSLIQFCGRAARN 541
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV-FREKILHIQTHEKFIRD 792
K A + KE I + + I I +
Sbjct 542 VEGKVIF---YADQKTRSIEQTLKETERRRQIQLDYNKANNITPKPIIKAIFANPIPQGG 598
Query 793 SQEKPKPVPDKENKKLLCRKCKAL 816
+E +P + K L + K
Sbjct 599 KKESQEPAKTPLSIKELEKLIKKF 622
>sp|Q837R9|UVRB_ENTFA UvrABC system protein B OS=Enterococcus
faecalis (strain ATCC 700802 / V583) OX=226185 GN=uvrB PE=3
SV=1
Length=665
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 65/427 (15%), Positives = 146/427 (34%), Gaps = 54/427 (13%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD 481
+ +D I ++ A V T + V ++ S+I ++ + + L +
Sbjct 224 DEIDRIREVDALTGEIVGETEHVAIFPATHFVTN-EEHMEHAISQIQEELEARLKVLRSE 282
Query 482 TESLAKRICKDLENLSQIQNREFG----TQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
+ L + + N RE G + Y + + Q+ + + D + +
Sbjct 283 NKLLEAQRLEQRTNYDIEMMREMGYTSGIENYSRHMDGRQEGEPPYTLLDFFPDDFLLVI 342
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDLTQ------- 588
+ + + + AR + +DY S + +E EQ + Q
Sbjct 343 DESHVT--MPQIRGMYNGDRARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVSAT 400
Query 589 ----RFEEKLQELESVSRDPSNENPKLE---------DLCFILQEEYHLNPETITILFVK 635
E+ ++ + R +P++E DL + + + +
Sbjct 401 PGPYEMEQTETVVQQIIRPTGLLDPEVEIRPIMGQIDDLVGEI--HERIEKDQRVFVTTL 458
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
T+ + + L ++ + LK L ++ + + I+ + G+ +ILI
Sbjct 459 TKKMAEDLTDYFKEL----GLKVKYL--------HSDIKTLERTEIIRDLRL-GEFDILI 505
Query 696 ATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIE 749
++ EGID+ + +L+ + + + ++QT GR R K + A I
Sbjct 506 GINLLREGIDVPEVSLIAILDADKEGFLRSERSLVQTMGRAARNAEGKVIM---YADKIT 562
Query 750 KEQINMYKEKMMNDSILRLQTWDEAV-FREKILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
E +I + + + I I+ + + + V ++ K
Sbjct 563 DSMQRAMDETARRRAIQEAYNEEHGIEPKTIIKEIRDLISISKTADKDETVVQLDKSYKD 622
Query 809 LCRKCKA 815
L R+ KA
Sbjct 623 LSRQEKA 629
Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 60/153 (39%), Gaps = 20/153 (13%)
Query 368 LMIFDECHNTS--------KQHPYNMIMFNYLDQ----------KLGGSSGPLPQVIGLT 409
L++ DE H T ++ +Y + +L + Q++ ++
Sbjct 339 LLVIDESHVTMPQIRGMYNGDRARKQMLVDYGFRLPSALDNRPLRLEEFEQHVNQIVYVS 398
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASV-IATVKHNLEELEQVVY-KPQKFFRKVESRI 467
A+ G + + T+ + I + LD V I + +++L ++ + +K R + +
Sbjct 399 ATPGPYEMEQTETVVQQIIRPTGLLDPEVEIRPIMGQIDDLVGEIHERIEKDQRVFVTTL 458
Query 468 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ K + ++ K + D++ L + +
Sbjct 459 TKKMAEDLTDYFKELGLKVKYLHSDIKTLERTE 491
>sp|P47664|Y425_MYCGE Probable ATP-dependent RNA helicase MG425
OS=Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 /
NCTC 10195 / G37) OX=243273 GN=MG425 PE=3 SV=1
Length=449
Score = 63.3 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKY 313
+ KN I+ +PTG GKT ++ I E LK+ + V+ A + EQ K+ FS
Sbjct 38 LSEKNLIVHSPTGTGKTAAFAIPIIEKLLKEDQTAKPTLVI--APTRELVEQIKTTFSNI 95
Query 314 FERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
+ R+ + G +++I N II+ T +++ L++ I + L I DE
Sbjct 96 AKNKKLRIISLIGGVPAWKQIKKIKTNPQIIVGTMGRIMDLLERKAIHFSDLEHL-IIDE 154
Query 374 C 374
Sbjct 155 V 155
Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/159 (19%), Positives = 53/159 (33%), Gaps = 17/159 (11%)
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L I+F T+ LVD L ++ N +F +
Sbjct 236 QALYSLIKTAQVKSIIVFCDTKKLVDDLHVFLRKNELRTF------------ALHGDKKQ 283
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARG 735
++ L F + IL+ T + GI + ++VI Y N+ I GR
Sbjct 284 FIRERNLKIFANTKQPTILVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNN 343
Query 736 --SKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
C ++ EK+ EK+ ++ I + +
Sbjct 344 HKGTCVTFCTS---QEKKVFLKMVEKITDNRIAECKQME 379
>sp|Q9HPZ2|RAD25_HALSA Putative DNA helicase Rad25 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091
GN=rad25 PE=3 SV=2
Length=600
Score = 63.6 bits (153), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/344 (15%), Positives = 96/344 (28%), Gaps = 57/344 (17%)
Query 144 STKGMMAGAEKLVEC----LLRSDKENWPKTLKLALEKERNKF--------SELWIV--- 188
S ++A +L+ L+ +E W + + L + + S L V
Sbjct 129 SLSDLVAAITELLPRDCPTLIEWVREQWTRATRFRLRTHDDGYVVLEAATDSLLGNVAEQ 188
Query 189 --EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNY 246
+ + D E + + + E + + R Y
Sbjct 189 KLDDDVLRAPISDTEAWVAAEQVAPLKRTLYEAGYPVRDDRDLESGEPLAVDLHLDLRPY 248
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
Q + ++ P G GKT V+ + + G+ + + Q
Sbjct 249 QQDWVDRFEDASAGVLVGPPGSGKT-VAAMGALESV-------GGETLVLVPSRELATQW 300
Query 307 KSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIF 366
+ G ++ G P + I T Q + + + +
Sbjct 301 REELLANTSLTGDQIGEYHGGEKRVRP---------VTIATYQTAGMD-RHRHVFDDREW 350
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDY 426
L+++DE H+ I + S +GLTA+ D K D
Sbjct 351 GLIVYDEVHH---------IPAEVARRSASLQSKHR---LGLTATPVREDDKEADIYTLV 398
Query 427 ICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 470
+ DA A V +P+ R V R D
Sbjct 399 GRPIGTDWDALFDA----------GFVAEPEVEIRYVPWRDDDD 432
Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 28/149 (19%), Positives = 55/149 (37%), Gaps = 22/149 (15%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+ ENP E L ++ + +T ++FV +++ +++
Sbjct 448 AAENPAKEAEIEHLVDQ---HGDTQALVFV----------DYLSQGERIAERLDAPFV-- 492
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL-VILYEYVGNVIK 723
N ++ D F+ +G + L+ + + DEGID+ V+ G+ +
Sbjct 493 -----NGETPHSRRETHFDQFR-TGALDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQ 546
Query 724 MIQTRGRGRARGSKCFLLTSNAGVIEKEQ 752
Q GR GS+ L E+E
Sbjct 547 GAQRAGRTMRPGSQSLLFVLATRGTEEED 575
>sp|Q7VKV0|RAPA_HAEDU RNA polymerase-associated protein RapA OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) OX=233412
GN=rapA PE=3 SV=1
Length=973
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 71/476 (15%), Positives = 145/476 (30%), Gaps = 63/476 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I + L G+ +V+ + Q F+ F
Sbjct 178 GLGKTIEAGMILQQQL---FSGRVERVLVLVP-ESLQHQWLVEMLRRFNLNFSLFDEERC 233
Query 323 GISGATAEN--VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN---- 376
T E+ E E+ ++I + L + T L+ + L+I DE H+
Sbjct 234 SDFDKTDEDGNDISENPFESEALVIASIDWLEKATTRATQVLLADWDLLIVDEAHHLVCS 293
Query 377 -TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLD 435
T Y Q + + + V+ LTA+ LD A LD
Sbjct 294 ATESSQAY---------QFVARLAKKITAVLLLTATP-------EQLGLDSHFARLALLD 337
Query 436 ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
+ E QK ++ V +++ M +D E
Sbjct 338 PDRFYDYATFIAE--------QKAYKPVADAVANLLNDKPLNDMAKNAIAELLSEQDTEP 389
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
+ +I N E + + ++ V + + + R Y+ +
Sbjct 390 MFKIINSE-KSAESDRLQVRQELINALIDRHGTSRVLFRNTRQGVKGFPHRVYHQITL-- 446
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
M D + + + +R + L + + +P++ L
Sbjct 447 ---EMPDQYANALNV--RAMMGSMEPQDHFYPERLYQCLNSQAPMGNRWEDFDPRIAWLM 501
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
L+ + ++ K + L + ++ + + MT+
Sbjct 502 TFLKNH----RDEKVLIICKQAEIAITLAQVLREREA---IRTAVF--------HEHMTI 546
Query 676 PAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + +LI++S+ EG + ++L+ N + Q+ GR
Sbjct 547 VERDRAAAYFAQIEEGAQVLISSSIGSEGRNFQFARNLVLFNLPDNPDLLEQSIGR 602
>sp|Q2GZU7|DBP7_CHAGB ATP-dependent RNA helicase DBP7 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP7 PE=3 SV=1
Length=806
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 38/193 (20%), Positives = 65/193 (34%), Gaps = 29/193 (15%)
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE-TITILFVK 635
A E + D F Q +S P+ +L L +L+ + I+F+
Sbjct 382 AAKSESDGDADAVFAAPSQLKQSCIVTPAKL--RLVTLIALLKSTFARRGSVMKAIIFIS 439
Query 636 TRALVDALKNWIEG-------------------NPKLSFLKPGILTGRGKTNQ-----NT 671
VD ++ + + + +T +
Sbjct 440 CADSVDFHYQLLKDTKAVEPPTPDSSSTKDRNPHTDTTVARAAYITSPANPKVMLHKLHG 499
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR- 730
+ P + L+AF A D +LI T ++ G+D+ +LVI Y+ V + GR
Sbjct 500 SLAQPVRSATLNAFSACKDPAVLITTDISSRGLDVPAVDLVIEYDPAFAVPDHVHRIGRT 559
Query 731 GRA-RGSKCFLLT 742
RA R K L
Sbjct 560 ARAGRAGKAVLFL 572
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/151 (22%), Positives = 55/151 (36%), Gaps = 25/151 (17%)
Query 248 LELALPAMKGKNTI-----------ICAPTGCGKTFVSLLICEH-----HLKKFPQGQKG 291
LE+ P KNT+ + A TG GKT LL H L + +
Sbjct 160 LEMKAPTAIQKNTVPQLINGDSDAFLQAETGSGKTLAYLLPIVHRIMSLSLNEDGTPKDT 219
Query 292 KV--------VFFANQIPVYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENND 342
KV + A + +Q V K T + G ++ +I + +
Sbjct 220 KVHRNSGLFAIIMAPTRELCKQISVVLEKVLRCAPWLVCTTVIGGESKKSEKARIRKGVN 279
Query 343 IIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
I+I TP L ++L + ++ ++ DE
Sbjct 280 ILIATPGRLADHLDNTKVLNVGTVRWLVLDE 310
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like
OS=Danio rerio OX=7955 GN=ercc6l PE=1 SV=1
Length=1451
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 88/543 (16%), Positives = 187/543 (34%), Gaps = 67/543 (12%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
I+ G GKT + + + + + + F+K+ G R
Sbjct 128 ILADDMGLGKT---IQVISFLSGMYDAELANHTLLVMPT-SLIKNWVREFAKWTP--GMR 181
Query 321 VTGISGATAENVPV--EQIVENNDIIILTPQILVNNLKKGTIPSLSIFT--LMIFDECHN 376
V G++ E+I +II T Q+L+NN ++ F +I DE H
Sbjct 182 VKEFHGSSKTERNRNLERIQRKGGVIITTYQMLINNYEQLGSNGHREFKWDYVILDEAHK 241
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTASVGVGDAKNTDEALDYICKLCAS 433
K S+ +P +V+ LT + + + D+ C+
Sbjct 242 -----------IKTSSTKTAKSAHAIPAKNRVL-LTGTPVQNNLREMWALFDFACQ---- 285
Query 434 LDASVIATVKHNLEELEQVVYKPQKFF-----RKVESRISDKFKYIIAQ-LMRDTESLAK 487
S++ T K E E + + ++ + + RIS II +R T++ +
Sbjct 286 --GSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQ 343
Query 488 RICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 547
+ LE + + + + V + + S + + ++ L +
Sbjct 344 QKKLKLEEGFEEEEDQENKCPNAREGVEMPSLTRKNDLIVWTYLSSVQEDIYNKFISLDQ 403
Query 548 YNDALIISEHARMKDALDY---------LKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
+ L + + + + + + E + E + +++
Sbjct 404 IKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVHSDESESAVSQID 463
Query 599 SVSRD-PSNENPKLE---DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS 654
++S E+ KL+ L L+EE H T++F ++R ++D ++ +
Sbjct 464 NISDHTLIEESGKLQFVVSLMECLREEGH-----RTLIFSQSRKMLDIMERVLRNR-NFR 517
Query 655 FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVI 713
L+ T L ++ + F+ + I L+ T V GI + N V+
Sbjct 518 LLR----------LDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVV 567
Query 714 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE 773
+++ N Q R G ++ + +Y+ ++ DS++R T D+
Sbjct 568 IFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDK 627
Query 774 AVF 776
Sbjct 628 KNP 630
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like
OS=Homo sapiens OX=9606 GN=ERCC6L PE=1 SV=1
Length=1250
Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 86/541 (16%), Positives = 184/541 (34%), Gaps = 69/541 (13%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
I+ G GKT + I F V+ + F K+ G R
Sbjct 119 ILADDMGLGKT---VQIIAFLSGMFDASLVNHVLLIMPT-NLINTWVKEFIKWTP--GMR 172
Query 321 VTGISGATAENVPVE--QIVENNDIIILTPQILVNNLK--KGTIPSLSIFTLMIFDECHN 376
V G + + +I + N +II T Q+L+NN + ++ +I DE H
Sbjct 173 VKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAH- 231
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
I + + + P + LT + + + D+ C+
Sbjct 232 --------KIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQ------G 277
Query 437 SVIATVKHNLEELEQVVYK-PQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
S++ T+K E E + + +K E + K + +++ + +
Sbjct 278 SLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKP------YFLRRTKE 331
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
Q + + + V C + + K++ + + L RK+ I
Sbjct 332 DVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIK 391
Query 556 EHARMKD----ALDYLKDFFSNVR----------AAGFDEIEQDLTQRFEEKLQELESVS 601
E L LK + R G + + ++ V+
Sbjct 392 ELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQVT 451
Query 602 RD-PSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
D E+ K+ L +L+ + T++F ++R +++ ++ ++ L+
Sbjct 452 DDTLMEESGKMIFLMDLLKRL--RDEGHQTLVFSQSRQILNIIERLLKNR-HFKTLRIDG 508
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVILYEYVG 719
L ++ ++ F+ + D+++ L+ T V G+ + V++++
Sbjct 509 TVTH----------LLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSW 558
Query 720 NVIKMIQTRGR----GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
N Q R G+ + L + V EK +Y+ ++ DS++R T ++
Sbjct 559 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEK----IYRRQVFKDSLIRQTTGEKKN 614
Query 776 F 776
Sbjct 615 P 615
>sp|P56981|UVRB_BACCA UvrABC system protein B OS=Bacillus caldotenax
OX=1395 GN=uvrB PE=1 SV=2
Length=658
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/342 (14%), Positives = 125/342 (37%), Gaps = 42/342 (12%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD------TESLAKRICKDLENLSQIQ 500
+ELE+ + + + + +E++ ++ ++MR+ E+ ++ + +
Sbjct 265 QELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYT 324
Query 501 NREFGTQKYEQWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
++ + +++ V ++ + M + D + + N L E
Sbjct 325 LLDYF---PDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEE 381
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+ + + Y+ S E + ++ L+ + D +++DL
Sbjct 382 FEQKINQIIYV----SATPGPYELEHSPGVVEQIIRPTGLLDP-TIDVRPTKGQIDDLIG 436
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
++E N T++ T+ + + L ++++ + +K L ++ +
Sbjct 437 EIRERVERNE--RTLVTTLTKKMAEDLTDYLKE----AGIKVAYL--------HSEIKTL 482
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR- 730
+ I+ + G +++L+ ++ EG+DI + +LV + + + +IQT GR
Sbjct 483 ERIEIIRDLRL-GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541
Query 731 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R + A I K +E +I
Sbjct 542 ARNANGHVIM---YADTITKSMEIAIQETKRRRAIQEEYNRK 580
Score = 35.9 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 46/341 (13%), Positives = 105/341 (31%), Gaps = 61/341 (18%)
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECH-------------NTSK----QHPYNMI-M 387
TP L++ L+I DE H K H + +
Sbjct 320 STPYTLLDYFPDDF--------LIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSA 371
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+ + Q+I ++A+ G + +++ ++ I + LD ++
Sbjct 372 LDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQI 431
Query 448 E--LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC---KDLENLSQIQNR 502
+ + ++ + ++ R + + ++ K + +++ + K LE + I++
Sbjct 432 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDL 491
Query 503 EFGTQK--------------YEQWIVTVQKACMV-FQMPDKDEESRICKALFLYTSHLRK 547
G E +V + A F ++ I +A H+
Sbjct 492 RLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 551
Query 548 YNDALI------ISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
Y D + I E R + + V EI + + + E+
Sbjct 552 YADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETEMYEAK 611
Query 602 RDPSNENPKLEDLCFILQEE---------YHLNPETITILF 633
+ + E+L L+ E + + I+F
Sbjct 612 PAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIF 652
>sp|Q5KVB5|UVRB_GEOKA UvrABC system protein B OS=Geobacillus kaustophilus
(strain HTA426) OX=235909 GN=uvrB PE=3 SV=1
Length=658
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/342 (14%), Positives = 125/342 (37%), Gaps = 42/342 (12%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRD------TESLAKRICKDLENLSQIQ 500
+ELE+ + + + + +E++ ++ ++MR+ E+ ++ + +
Sbjct 265 QELEERLAELRAQGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLALRPPGSTPYT 324
Query 501 NREFGTQKYEQWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
++ + +++ V ++ + M + D + + N L E
Sbjct 325 LLDYF---PDDFLIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSALDNRPLTFEE 381
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+ + + Y+ S E + ++ L+ + D +++DL
Sbjct 382 FEQKINQIIYV----SATPGPYELEHSPGVVEQIIRPTGLLDP-TIDVRPTKGQIDDLIG 436
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
++E N T++ T+ + + L ++++ + +K L ++ +
Sbjct 437 EIRERVERNE--RTLVTTLTKKMAEDLTDYLKE----AGIKVAYL--------HSEIKTL 482
Query 677 AQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR- 730
+ I+ + G +++L+ ++ EG+DI + +LV + + + +IQT GR
Sbjct 483 ERIEIIRDLRL-GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541
Query 731 GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
R + A I K +E +I
Sbjct 542 ARNANGHVIM---YADTITKSMEVAIQETKRRRAIQEEYNRK 580
Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 46/341 (13%), Positives = 105/341 (31%), Gaps = 61/341 (18%)
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECH-------------NTSK----QHPYNMI-M 387
TP L++ L+I DE H K H + +
Sbjct 320 STPYTLLDYFPDDF--------LIIVDESHVTLPQLRGMYNGDRARKQVLVDHGFRLPSA 371
Query 388 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
+ + Q+I ++A+ G + +++ ++ I + LD ++
Sbjct 372 LDNRPLTFEEFEQKINQIIYVSATPGPYELEHSPGVVEQIIRPTGLLDPTIDVRPTKGQI 431
Query 448 E--LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC---KDLENLSQIQNR 502
+ + ++ + ++ R + + ++ K + +++ + K LE + I++
Sbjct 432 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDL 491
Query 503 EFGTQK--------------YEQWIVTVQKACMV-FQMPDKDEESRICKALFLYTSHLRK 547
G E +V + A F ++ I +A H+
Sbjct 492 RLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 551
Query 548 YNDALI------ISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
Y D + I E R + + V EI + + + E+
Sbjct 552 YADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDVIRATYAAEETEMYEAK 611
Query 602 RDPSNENPKLEDLCFILQEE---------YHLNPETITILF 633
+ + E+L L+ E + + I+F
Sbjct 612 PAAAMTKQEREELIRTLEAEMKEAAKALDFERAAQLRDIIF 652
>sp|A0PYA5|UVRB_CLONN UvrABC system protein B OS=Clostridium novyi
(strain NT) OX=386415 GN=uvrB PE=3 SV=1
Length=657
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 101/671 (15%), Positives = 211/671 (31%), Gaps = 117/671 (17%)
Query 236 NLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
++SP+KP Q E L K + + TG GKTF + ++K +
Sbjct 5 KIHSPYKPTGDQPRAIKSISEGILKGEKFQTLLGV--TGSGKTF----TMANIIEKVQKP 58
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV---------------TGISGATAENVP 333
+ A+ + Q S F ++F + + +
Sbjct 59 ----TLVLAHNKTLAAQLTSEFREFFPENCVEYFVSYYDYYQPEAYVPQTDTFIEKDASI 114
Query 334 VEQI-----------VENNDIIILT-------------PQILVNNLKKGTIPSLSIFTLM 369
++I E ND+I++ + L +L++G
Sbjct 115 NDEIDKLRHSATSALFERNDVIVVASVSCIYGLGNPEEYKKLTVSLREGMEKDR------ 168
Query 370 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICK 429
DE Y N++ L + +++ + + +D I +
Sbjct 169 --DEIMRQLVDIQYERNEINFVRGTFRARGDVL-DIFPASSTNIGIRVEFFGDEIDKIRE 225
Query 430 LCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
L ++I+ KH L + +I ++ + + L + + L +
Sbjct 226 F-DVLTGNIISARKHALIFPASHFATSKDKLEIAIKKIEEELEDRVKVLTAEDKLLEAQR 284
Query 490 CKDLENLSQIQNREFG----TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHL 545
+ N RE G + Y + + + D + + + +
Sbjct 285 VRQRTNFDIEMMREVGYCSGIENYSRVLDGRAPGTPPKTLMDYFPDDFLLFIDESHVT-- 342
Query 546 RKYNDALIISEHARMKDALDY---LKDFFSNVRAAGFDEIEQDLTQ-----------RFE 591
A+ + +R + ++Y L + N R FDE E L Q E
Sbjct 343 LPQVKAMYGGDRSRKNNLVEYGFRLPCAYDN-RPLKFDEFEGKLNQTVFVSATPAQYELE 401
Query 592 EKLQELESVSRDPSNENPK--LEDLCFILQEEYHLNPET-----ITILFVKTRALVDALK 644
E + R +P+ ++ + + + Y ET ++ T+ + + L
Sbjct 402 HSTNVAEQIIRPTGLLDPEIIVKPIKGQIDDLYASIKETIDKGFRVLVTTLTKKMSEDLT 461
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
++++ G ++ + + I+ + G ++L+ ++ EG+
Sbjct 462 DYLKS------------MGIKTEYLHSSIDTIKRMEIIRDLR-KGKFDVLVGINLLREGL 508
Query 705 DIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKE 758
DI + LV + + + ++QT GR R SK + A I K E
Sbjct 509 DIPEVALVAILDADKEGFLRSETSLVQTIGRAARNSESKVIM---YADNITKAMDKAISE 565
Query 759 KMMNDSILRLQTWDE-AVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALA 817
I V R + I+ + E V + +K K +
Sbjct 566 TNRRRKIQMEYNDKHGIVPRTVLKDIRDVIQTKVAEDEAEYKVNNNTDKLSKKEIEKLIN 625
Query 818 CYTADVRVIEE 828
Y +++V +
Sbjct 626 KYEEEMKVAAK 636
>sp|A1CTL8|MAK5_ASPCL ATP-dependent RNA helicase mak5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1 / QM 1276 / 107) OX=344612 GN=mak5 PE=3 SV=1
Length=774
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/123 (22%), Positives = 44/123 (36%), Gaps = 15/123 (12%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L +P+ T++F + + V + ++ M
Sbjct 493 FLYTLLLYHPKHRTLVFTNSISAVR------------RLAQLLQALQLPALALHSSMAQK 540
Query 677 AQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
A+ ++ F + + ILIAT VA G+DI +LVI Y + GR RA
Sbjct 541 ARLRSVERFSSPTANPGTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRSGRTARA 600
Query 734 RGS 736
S
Sbjct 601 GAS 603
Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 19/138 (14%)
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGKV------------VFFANQIP 301
+ G + + A TG GKT + I EH+L+K G + + +
Sbjct 233 LDGHDVVGKASTGSGKTLAFGIPILEHYLEKNRDGHGDIIGKKDKKDSTPIALILSPTRE 292
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q R+ ++G + ++++ DI+I TP + +
Sbjct 293 LAHQLAKHIGELVTQAPGVNARIALLTGGLSVQKQ-QRLLAGADIVIGTPGRVWEIMSTG 351
Query 357 KGTIPSLSIFTLMIFDEC 374
+G I + ++ DE
Sbjct 352 QGLIRKMQKIKFLVVDEA 369
>sp|Q8ZRV8|RAPA_SALTY RNA polymerase-associated protein RapA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
OX=99287 GN=rapA PE=3 SV=3
Length=968
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSTDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + EQ V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFEQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SPEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens
(strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664
GN=uvrB PE=3 SV=1
Length=671
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 90/621 (14%), Positives = 192/621 (31%), Gaps = 137/621 (22%)
Query 232 VSDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTF-VSLLICEHHLK 283
+S+ L + F+P Q +E + + + TG GKTF ++ +I +
Sbjct 1 MSEFQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGV--TGSGKTFSIANVIAQ---V 55
Query 284 KFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV------------------TGIS 325
+ P + A + Q F +F + T I
Sbjct 56 QRP------TLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIE 109
Query 326 GATAENVPVEQ--------IVENNDIIILT----------PQILVNNLKKGTI-PSLSIF 366
+ N +EQ ++E D II+T P+ + + L
Sbjct 110 KDASINDHIEQMRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQR 169
Query 367 TLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDY 426
L+ + + + +V G V D + L+
Sbjct 170 ALL--------------RRLADLQYTRNDMDFARATFRVRG-----DVIDIYPAESDLEA 210
Query 427 ICKLCASLDASVIATVKHN------LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
I D V + + + +L + + P+ + + D + I +L
Sbjct 211 IR--IELFDDEVESISAFDPLTGEVIRKLPRFTFYPKSHYVTPRETLLDAIEGIKVELQE 268
Query 481 DTESLA------------KRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDK 528
E L +R DLE + ++ G + Y +++ + D
Sbjct 269 RLEYLRSNNKLVEAQRLEQRTRFDLEMILELG-YCNGIENYSRYLSGRPAGAAPPTLYDY 327
Query 529 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDL 586
+ + S A+ + +R + ++Y S + FDE E
Sbjct 328 LPADALLVIDESHVS--VPQVGAMYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEGVS 385
Query 587 TQRF-----------EEKLQELESVSRDPSNENPKLE---DLCFILQEEYHLNP----ET 628
Q E + +E V R +P++E L + + E
Sbjct 386 PQTIFVSATPGNYEAEHAGRVVEQVVRPTGLVDPQVEVRPALTQVDDLLSEITKRVAVEE 445
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++ T+ + + L +++ + ++ L ++ + + I+ +
Sbjct 446 RVLVTTLTKRMAEDLTDYLADH----GVRVRYL--------HSDIDTVERVEIIRDLRL- 492
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLT 742
G ++L+ ++ EG+D+ + +LV + + + +IQT GR R + L
Sbjct 493 GTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYA 552
Query 743 SNAGVIEKEQINMYKEKMMND 763
+ I + +
Sbjct 553 DRITGSMERAIGETERRRDKQ 573
>sp|A4YAN1|RAPA_SHEPC RNA polymerase-associated protein RapA OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) OX=319224
GN=rapA PE=3 SV=1
Length=968
Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 63/475 (13%), Positives = 141/475 (30%), Gaps = 67/475 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERVLVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ ++ ++++ Y + + + ++ N
Sbjct 321 SHFARLRLLD-----PDRFYD-YDAFLAEEDSYKDVAMAAEALAGNAKLPDAAINSLTEL 374
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
E ++ Q + E + L + + A + R
Sbjct 375 LSEKDI-APSIRLIQADGIDSELQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRF 433
Query 561 KDA--LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCF 616
+ + + + R + + L + + L ++L D S K +
Sbjct 434 FNPHPQTMPEQYLTAARVSSMMGGHKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVD 493
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L + ++ +L+ + G T + GM++
Sbjct 494 WLIAFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSII 542
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 543 ERDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|B2A713|UVRB_NATTJ UvrABC system protein B OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF)
OX=457570 GN=uvrB PE=3 SV=1
Length=658
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 57/392 (15%), Positives = 142/392 (36%), Gaps = 51/392 (13%)
Query 454 YKPQKFFRKVESRISDKFKYIIAQLMR-DTESLAKRICKDLENLSQIQNREFGTQKYEQW 512
K +K ++ + ++ +Y+ Q + + L +R DLE L ++ G + Y +
Sbjct 253 SKLEKAIESIQEELHEQLEYLKRQGKAVEAKRLEQRTNYDLEMLQEMG-FCQGIENYSRH 311
Query 513 IVTVQKACMVFQMPDKDEESRI-CKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFF 571
++ + + D + + T + A +S + D L
Sbjct 312 LIGRPAGSRPYCLIDYFPDDYLMVVDESHMTIPQIRGMYAGDMSRKQNLVDHGFRLPSAL 371
Query 572 SNVRAAGFDEIEQDLTQRF-----------EEKLQELESVSRDPSNENPK--LEDLCFIL 618
N R F E E+ + Q E + +E + R +P+ + + +
Sbjct 372 DN-RPLKFQEFEKMINQNIYVSATPGPYEKEHSERIVEQIIRPTGLVDPETEVRPVKGQI 430
Query 619 QEEYH-----LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+ Y + ++ T+ + + L +++ ++ + ++ +
Sbjct 431 DDLYSEINKRTDRNERVLVTTLTKKMAEDLTDYLREM----GIRVRYM--------HSEI 478
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYE-----YVGNVIKMIQTR 728
+ I+ + G ++L+ ++ EG+D+ + +LV + + Y+ + +IQT
Sbjct 479 DTLERMEIIRDLRL-GKFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRDERSLIQTM 537
Query 729 GR-GRARGSKCFL---LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQ 784
GR R + + +++ ++ N +EK + ++K+ +
Sbjct 538 GRAARNVNGRVIMYGDAITDSMRRAIDETNRRREKQI--EFNARHNITPQTVQKKVHDVI 595
Query 785 THEKFIRDSQEKPKP-----VPDKENKKLLCR 811
+ D E P + KE K+L+ +
Sbjct 596 EATRSAEDETEAATPENIQEMSAKERKELIAK 627
>sp|Q3ZZK7|UVRB_DEHMC UvrABC system protein B OS=Dehalococcoides
mccartyi (strain CBDB1) OX=255470 GN=uvrB PE=3 SV=1
Length=664
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 69/428 (16%), Positives = 157/428 (37%), Gaps = 51/428 (12%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF---FRKVESRISDKFKYIIAQ- 477
+ ++ I L + + N+ + V +K + +++ + D+ K + A+
Sbjct 217 DEIERIVSLDPVSGELLAGIEEINIYPAKHFVTSAEKMAEAIKSIQAELEDRLKELEAEG 276
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
M + L +R DLE + Q G + Y + + + + + D E +
Sbjct 277 KMLEAARLKQRTNYDLEMMEQAG-YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIV 335
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDLTQRF----- 590
+ S + + AR K +DY S + FDE + + Q
Sbjct 336 DESHMS--LPQIRGMYAGDSARKKTLVDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSAT 393
Query 591 ------EEKLQELESVSRDPSNENP---------KLEDLCFILQEEYHLNPETITILFVK 635
E LQ +E + R P +++DL +++ N ++
Sbjct 394 PGPYEKEHSLQVVEQLVRPTGLLEPVMTVKPTVGQIDDLLEEVKKRVAKNE--RVLITTL 451
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
T+ + + L +++ +K L ++ + + IL + G +++++
Sbjct 452 TKKMSEKLADYLVEM----GVKTHYL--------HSEVDTLERIEILRDLRL-GVYDVIV 498
Query 696 ATSVADEGIDIAQCNLVILYE-----YVGNVIKMIQTRGR-GRARGSKCFLLTSN-AGVI 748
++ EG+D+ + +LV + + Y+ + +IQT GR R + + G +
Sbjct 499 GINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAARHVDGQVIMYADKITGSM 558
Query 749 EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
++ + + + + + RL R+ I I + + P+ P ++
Sbjct 559 QRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERIRSVTAEVSGPEFRPTPTLRED 618
Query 809 LCRKCKAL 816
+ R K L
Sbjct 619 IARLIKEL 626
>sp|A3LZT3|DBP10_PICST ATP-dependent RNA helicase DBP10 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP10 PE=3 SV=2
Length=931
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 47/256 (18%), Positives = 87/256 (34%), Gaps = 27/256 (11%)
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
+ A+++ + L L + + + +V KA + + + +
Sbjct 258 QGFAEQLNELLAVLPPQRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDADSKISDQLQM- 316
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE--QDLTQRFEEKLQELESV 600
A ++ + L Y+ + ++I+ + + +R ++ +E E
Sbjct 317 --------AFFTTKKNEREANLLYVLQEVIKMPLGTAEQIKKLRLMDKRVNDEAEEEELE 368
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ S K + L L TI+FV T+ V+ + + L G
Sbjct 369 NESGSKRKYKFKKER--LPSANVLPSPHSTIVFVPTKHHVEYITTLLRDAGYLVSYIYGT 426
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN 720
L + NQ L F+ G +L+ T VA GIDI V+ Y G+
Sbjct 427 LDQHARKNQ------------LYQFRL-GMTTVLVVTDVAARGIDIPVLANVVNYTLPGS 473
Query 721 VIKMIQTRGR-GRARG 735
I GR RA
Sbjct 474 SKIFIHRVGRTARAGN 489
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 46/122 (38%), Gaps = 1/122 (1%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
M ++ + A TG GKT L LK + + + + Q ++
Sbjct 134 MANRDVVGMARTGSGKTAAFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFS 193
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ R ++G + +V N DI+I TP ++ L+ L ++FDE
Sbjct 194 KGSDLRAIVLTGGDSLEDQFSSMVSNPDIVIATPGRFLH-LQVEMQLDLKTVEYIVFDEA 252
Query 375 HN 376
+
Sbjct 253 DH 254
>sp|A6RSH5|DBP7_BOTFB ATP-dependent RNA helicase dbp7 OS=Botryotinia
fuckeliana (strain B05.10) OX=332648 GN=dbp7 PE=3 SV=1
Length=877
Score = 63.6 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/217 (18%), Positives = 71/217 (33%), Gaps = 34/217 (16%)
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+KDA+ +++ S + + + F Q +S + P+ +L L
Sbjct 475 EISLKDAV-HIQADPSEQEKQDKENGVEAQDKAFSAPTQLKQSYAIVPAKL--RLVTLTA 531
Query 617 ILQEEYHLNPE-TITILFVKTRALVDALKNWIEGNPKLS------------------FLK 657
+L+ + I+F+ VD + P+ S +K
Sbjct 532 LLKRAFARKGSVMKAIVFISCADSVDFHFSLFSRTPEASAEVVDEEKVDLPALPKSELVK 591
Query 658 PGILTGRGKTNQ---------NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQ 708
I G +N + + + L AF S D ++I T VA G+D+
Sbjct 592 ETIAHGTTISNNSNPVILHKLHGSLAQNIRTATLKAFSESADPCVMICTDVASRGLDLPN 651
Query 709 CNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLT 742
+ VI Y+ + + + R G L
Sbjct 652 VDFVIEYDPPFSAEDHLHRVGRTARAGREGRALIFLM 688
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/120 (18%), Positives = 47/120 (39%), Gaps = 8/120 (7%)
Query 262 ICAPTGCGKTFVSLLICEHHLK-------KFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
I A TG GKT LL + + + + + + +Q +V K
Sbjct 299 IQAETGSGKTLAYLLPIVERILALSENGVQIHRDSGLFAIILSPTRELCKQIAAVLEKVL 358
Query 315 E-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 373
T ++G ++ ++ + +I++ TP L ++L + +++ ++ DE
Sbjct 359 RCAPWIVGTTVNGGESKQSEKARLRKGVNILVATPGRLADHLDNTEVLNVATVRWLVLDE 418
>sp|Q869P0|DDX31_DICDI Probable ATP-dependent RNA helicase ddx31
OS=Dictyostelium discoideum OX=44689 GN=ddx31 PE=3 SV=2
Length=908
Score = 63.6 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQQKSVFSK 312
+KG + ++ A TG GKT L+ L ++ + V + Q K
Sbjct 243 LKGNDALVKAQTGSGKTLSYLIPVVQKLTEQRVTRSDGCYCVIITPTRELSSQIYEELQK 302
Query 313 YFERHGYRVTGI-SGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
+ + V GI G + +I + +I++ TP L+++L+ I
Sbjct 303 LLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLLDHLQNTQSFPTDNIKWCIL 362
Query 372 DEC 374
DE
Sbjct 363 DEA 365
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 67/187 (36%), Gaps = 6/187 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + FK S + IL+ T V+ G+D+ N ++ Y+ + I G
Sbjct 610 HGELDQQTRTKTFFDFKNS-PNGILLTTDVSARGLDLPSVNWIVQYDPCSDTKDYIHRIG 668
Query 730 R-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
R R C LL EK+ I+ + ++ +++ T +++F ++ K
Sbjct 669 RTARLGNQGCSLLFLLPS--EKKYIDHLAKFNVSVKEMKVTTILQSLFYTSDGQLKKTSK 726
Query 789 FIRDSQEKPKPVPDKENKKLLCRKCKALA-CYTADVRVIEECHYTVLGDAFKECFVSRPH 847
+ + E + K K +A C H + F ++ H
Sbjct 727 SSQLESQVHDLQLLFERFLIYDSKAKEMARCAYQSFLRSYATHKADVKSIFHISYLHLGH 786
Query 848 PKPKQFS 854
K F+
Sbjct 787 VS-KSFA 792
>sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp9
PE=3 SV=1
Length=619
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 42/227 (19%), Positives = 90/227 (40%), Gaps = 25/227 (11%)
Query 200 LEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF------KPRNYQLELALP 253
++ K++ +D+ + + ++N+ S D L KP Q +
Sbjct 1 MKRKLDANDVPSTEVAEEKETKDADNTDFESLNLDPRLRQALIREQFTKPTPVQSKAIPL 60
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KV---VFFANQIPVYEQQKSV 309
A++GK+ + A TG GKT +L + + K + + EQ +SV
Sbjct 61 ALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLVLVPTRELAEQVQSV 120
Query 310 FSKYFERHGYRVTG--ISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFT 367
K+ G V ++ ++ V + + D+I+ TP ++ NL + SL T
Sbjct 121 IIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSAL-SLEHLT 179
Query 368 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTAS 411
++ DE ++++ D+ + + +P+ ++A+
Sbjct 180 HLVIDEA---------DLVLSYGYDEDINALAKAIPRGVQTFLMSAT 217
Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 8/45 (18%), Positives = 12/45 (27%), Gaps = 3/45 (7%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKM---IQTRGRGRARGSKCFLLT 742
GID V+ ++ I GR G +
Sbjct 395 SRGIDFQNVACVLNFDLPTTSKSYTHRIGRTGRAGKAGMALSFVV 439
>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia
coli O157:H7 OX=83334 GN=recG PE=3 SV=1
Length=693
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 62/354 (18%), Positives = 119/354 (34%), Gaps = 87/354 (25%)
Query 100 LEEYRLLLKRLQPEFKTRIIP-------------TDIISDLSECLINQECEEILQICSTK 146
EYR+ PE + + P + + L EE+L ++
Sbjct 130 HPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ 189
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMET 206
GMM + + L R P TL+L+ + ++ ++ ++++ +L
Sbjct 190 GMMT-LPEALRTLHRP-----PPTLQLSDLETGQHPAQRRLI---LEELLAHNLSMLALR 240
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKP------------RNYQLELALPA 254
+ Q F Q LS N +++ PFKP R+ L++ +
Sbjct 241 AGAQRF-----HAQPLSANDALKNKLLA---ALPFKPTGAQARVVAEIERDMALDVPMMR 292
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ G GKT + +V A + EQ + F +F
Sbjct 293 ------LVQGDVGSGKT-----LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWF 341
Query 315 ERHGYRVTGISGATAENVP--VEQIVENNDI--IILTPQILVNNLKKGTIPSLSIFTLMI 370
E G V ++G ++ + + + I+ T I ++ + L+I
Sbjct 342 EPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQ------FNGLALVI 395
Query 371 FDECHN--------------TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
DE H HP+ +IM ++ P+P+ + +TA
Sbjct 396 IDEQHRFGVHQRLALWEKGQQQGFHPHQLIM----------TATPIPRTLAMTA 439
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 3/108 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ M ++ ++ +FK G+ ++L+AT+V + G+D+ +L+I+ + ++ Q R
Sbjct 524 HGRMKPAEKQAVMASFK-QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR GR + +L + + QI + + ND + Q E
Sbjct 583 GRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIR 630
>sp|Q6CWQ5|MRH4_KLULA ATP-dependent RNA helicase MRH4, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=MRH4
PE=3 SV=1
Length=584
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 43/217 (20%), Positives = 73/217 (34%), Gaps = 37/217 (17%)
Query 180 NKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYS 239
N FS+L K + +V + +E S + +NL + P E +
Sbjct 115 NDFSQL----KILPEVRDKLMEVISSESLL---------NKNLLDVKYNPKENNVQEFKK 161
Query 240 PFKPRN------YQLE--LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG 291
KP YQ L P ++ + +I A TG GKT L+ +LK+
Sbjct 162 HLKPSPIQTTAIYQTSKTLMDPQLQVR--LIAAETGSGKTMAYLIPLVDYLKRTEMENPS 219
Query 292 ----------KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
+ + + EQ SK G ++ VE +
Sbjct 220 WETLKDKAIVRSIILLPTHELVEQVYQTVSKLEPALGMHTYKWDAGSSYKGFVEALKGRI 279
Query 342 DIIILTPQILVNNLKKGTIPS----LSIFTLMIFDEC 374
DI++ TP +++ + LS ++ DE
Sbjct 280 DIMVTTPGKILSLFNISMVNRPDRILSQVKFLVMDEA 316
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 75/252 (30%), Gaps = 40/252 (16%)
Query 534 ICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEK 593
+ + H++ N L S + + + +L + +
Sbjct 324 WVEDSYSTIKHMQNLNHVLFCSATIPK-----EFQKTITRLFPTVGVIASPNLHKINHKN 378
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHLN----PETITILFVKTRALVDALKNWIEG 649
+L + P + K + L IL N E ++FV + V + +
Sbjct 379 QIKLINADMAPYKGS-KTKALAQILYSINRDNIDPGFEKRVVIFVNEKENVPLVATKLAN 437
Query 650 N---------------PKLSFLKPGI-----LTGRGKTNQNTG----MTLPAQKCILDAF 685
+L +KP + +T R T M +P +++
Sbjct 438 QYGHDVVALTGNDSVEERLEKIKPFMDPPKKMTTRKSEKVTTENTVTMKIPNSNIVIEEI 497
Query 686 KASGD------HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF 739
+ +L+ T V GI+ C V+LY+ + ++ GR K
Sbjct 498 PEDNEAFVESTLKVLVTTDVLARGINFRGCRYVVLYDIPNTPVDLVHRVGRTGRMNQKGS 557
Query 740 LLTSNAGVIEKE 751
+ ++
Sbjct 558 VFIITGKRVKNW 569
>sp|Q4WMS3|MAK5_ASPFU ATP-dependent RNA helicase mak5 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=mak5 PE=3 SV=2
Length=777
Score = 63.6 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/188 (20%), Positives = 63/188 (34%), Gaps = 24/188 (13%)
Query 552 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 611
+ K+++DYL N R I+ + + + L+E +
Sbjct 440 WTRGDIMDKKESMDYLLQKL-NFREEKPKFIDMNPISQMADNLKEGIVECGAMEKD---- 494
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
L +P+ T++F + + V K ++
Sbjct 495 ----LFLYTLLLYHPKHRTLVFTNSISAVR------------RLTKLLQTLQLPALALHS 538
Query 672 GMTLPAQKCILDAFKA--SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
M A+ ++ F + S ILIAT VA G+DI +LVI Y + G
Sbjct 539 SMAQKARLRSVERFSSPSSDPSTILIATDVAARGLDIKGIDLVIHYHAPRTADTYVHRSG 598
Query 730 R-GRARGS 736
R RA S
Sbjct 599 RTARAGAS 606
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/198 (17%), Positives = 67/198 (34%), Gaps = 22/198 (11%)
Query 198 EDLEDKMETSDIQIFYQEDPECQNLSENSC---PPSEVSDTNLYSPFKPRNYQLELALPA 254
D+ S + E+ + ++S P ++ + P + Q
Sbjct 176 RDMSINAGLSFAALQDTEEDDGADVSAWDSLGLSPEILTGLSKMKFGSPTSVQEACIPQI 235
Query 255 MKGKNTIICAPTGCGKTFV-SLLICEHHLKKFPQGQKGK------------VVFFANQIP 301
++G + I A TG GKT + I EH+L+K + + +
Sbjct 236 LEGHDVIGKASTGSGKTLAFGIPILEHYLEKKRDDISAQKEQMSEKDSTPIALILSPTRE 295
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK-- 356
+ Q R+ ++G + ++++ DI+I TP + L
Sbjct 296 LAHQLSKHIGELIAQAPGVNARIALLTGGLSVQKQ-QRLLSGADIVIGTPGRVWEILSTG 354
Query 357 KGTIPSLSIFTLMIFDEC 374
+G I + ++ DE
Sbjct 355 QGLIRKMQQIKFLVVDEA 372
>sp|Q8VDW0|DX39A_MOUSE ATP-dependent RNA helicase DDX39A OS=Mus
musculus OX=10090 GN=Ddx39a PE=1 SV=1
Length=427
Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/215 (17%), Positives = 74/215 (34%), Gaps = 25/215 (12%)
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
L + ++ K+ + F + D+ + ++ +L+
Sbjct 216 LTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD----- 270
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
S +N KL DL +L ++FVK+ AL +
Sbjct 271 SEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCMALAQLLVEQ------------NF 311
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ GM + FK IL+AT++ G+DI + N+V Y+ +
Sbjct 312 PAIAIHRGMAQEERLSRYQQFK-DFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTY 370
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ R G+K +T + + + +N +++
Sbjct 371 LHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDR 405
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 56/138 (41%), Gaps = 11/138 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V +L ++ P + V+ +
Sbjct 66 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--PVNGQVSVLVMCHTRE 123
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLK 356
+ Q + FSKY +V+ G + E +++ N +++ TP ++ L
Sbjct 124 LAFQISKEYERFSKYMP--SVKVSVFFGGLSIKK-DEDVLKKNCPHVVVGTPGRIL-ALV 179
Query 357 KGTIPSLSIFTLMIFDEC 374
+ +L + DEC
Sbjct 180 RSRSLNLRNVKHFVLDEC 197
>sp|Q5U216|DX39A_RAT ATP-dependent RNA helicase DDX39A OS=Rattus
norvegicus OX=10116 GN=Ddx39a PE=2 SV=1
Length=427
Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/215 (17%), Positives = 74/215 (34%), Gaps = 25/215 (12%)
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
L + ++ K+ + F + D+ + ++ +L+
Sbjct 216 LTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD----- 270
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
S +N KL DL +L ++FVK+ AL +
Sbjct 271 SEKNRKLFDLLDVL-------EFNQVVIFVKSVQRCMALAQLLVEQ------------NF 311
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
+ GM + FK IL+AT++ G+DI + N+V Y+ +
Sbjct 312 PAIAIHRGMAQEERLSRYQQFK-DFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTY 370
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+ R G+K +T + + + +N +++
Sbjct 371 LHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDR 405
Score = 45.2 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 30/138 (22%), Positives = 56/138 (41%), Gaps = 11/138 (8%)
Query 242 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 301
P Q E A+ G + + A +G GKT V +L ++ P + V+ +
Sbjct 66 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE--PINGQVSVLVMCHTRE 123
Query 302 VYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLK 356
+ Q + FSKY +V+ G + E +++ N +++ TP ++ L
Sbjct 124 LAFQISKEYERFSKYMP--SVKVSVFFGGLSIKK-DEDVLKKNCPHVVVGTPGRIL-ALV 179
Query 357 KGTIPSLSIFTLMIFDEC 374
+ +L + DEC
Sbjct 180 RSRSLNLRNVKHFVLDEC 197
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema
pallidum (strain Nichols) OX=243276 GN=recG PE=3 SV=1
Length=686
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/206 (17%), Positives = 71/206 (34%), Gaps = 32/206 (16%)
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
G GKT V+ C ++ Q G+V A + Q ++ G R+ +
Sbjct 299 DVGSGKTLVAFFSCLKIIE-----QGGQVALLAPTELLARQHADTAARLLAPIGIRLAFL 353
Query 325 SGATAENVPV----EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+G + ++++ T + +++ L+I DE H
Sbjct 354 TGNVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRY------HDLRLVIIDEQHR---- 403
Query 381 HPYNMIMFNYLDQK--LGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
+ ++ + L QK G G P +I ++A+ + LD S+
Sbjct 404 --FGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTL---------ALSVFGDLDISI 452
Query 439 IATVKHNLEELEQVVYKPQKFFRKVE 464
I ++ + + + + K + E
Sbjct 453 IKSMPGGRKPVITYIARKTKAEKVYE 478
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/97 (22%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI-----LYEYVGNVIKM 724
++ MT Q+ I+ F + G +IL+ATSV + G+D+ N ++ + +
Sbjct 528 HSKMTEEEQQRIMKYF-SEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSA----L 582
Query 725 IQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMM 761
Q RGR + + + + + + K+M
Sbjct 583 HQLRGRVGRGDVQSYCFLMHGDEMTE--CAKRRLKIM 617
>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia
prowazekii (strain Madrid E) OX=272947 GN=mfd PE=3
SV=2
Length=1120
Score = 63.6 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 47/249 (19%), Positives = 92/249 (37%), Gaps = 44/249 (18%)
Query 261 IICAPTGCGKTFVSL----LICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFER 316
+IC G GKT V++ ++ + + PQ V + Q S F + F+
Sbjct 601 LICGDVGFGKTEVAMRAVFMVAKSLNEYLPQ-----VAVVVPTTILCSQHFSRFIERFKG 655
Query 317 HGYRVTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
G + +S + + +E +III T +L N L+I D
Sbjct 656 FGLNIKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKN------TKFFNLKLLIID 709
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E + F ++ S V+ ++A+ + ++ + +L
Sbjct 710 EEQH-----------FGVSQKEFLKSLKSSTHVLAMSATPI---PRTLQMSMTGLKEL-- 753
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF----KYIIAQLMRDTESLAKR 488
S+IAT N E+ V P ++ + + F + +A ++D E + K+
Sbjct 754 ----SIIATPPLNRLEVRTSV-MPFDPVIIRDALLREHFRGGRSFYVAPRIKDMEDIEKQ 808
Query 489 ICKDLENLS 497
+ + + LS
Sbjct 809 LKQIVPELS 817
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 44/96 (46%), Gaps = 3/96 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ MT ++ F G +ILI+T++ + GIDIA+ N +I+++ + ++ Q R
Sbjct 822 HGKMTPSKIDEVMSEF-YVGKFDILISTTIIESGIDIAEANTMIIHKADTLGLSQLYQLR 880
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
GR GR + LT + E + N
Sbjct 881 GRIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNS 916
>sp|A2C5S6|UVRB_PROM3 UvrABC system protein B OS=Prochlorococcus
marinus (strain MIT 9303) OX=59922 GN=uvrB PE=3 SV=1
Length=679
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 45/377 (12%), Positives = 116/377 (31%), Gaps = 49/377 (13%)
Query 418 KNTDEALDYICKLCASLDASVIATVKHN--------LEELEQVVYKPQKFFRKVESRISD 469
T + + A T K +EL + + + + +E++ +
Sbjct 226 DPTTGEILQSLEAINIYPAKHFVTPKERLNVAVQAIRDELRERLQVLNEQGKLLEAQRLE 285
Query 470 KFKYIIAQLMRDT------ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKA---- 519
+ +++R+ E+ A+ + + W++ V ++
Sbjct 286 QRTAYDLEMLREVGYCNGVENYARHLAGRSAGTPP---ECLIDYFPDDWLLVVDESHVTC 342
Query 520 CMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
+ M + D+ + + N L E R ++ +
Sbjct 343 SQLKAMYNGDQARKKVLIEHGFRLPSAADNRPLKSEEFWRKARQTVFVSATPGDWELTQS 402
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
D + R L L V + L ++ + ++ T+ +
Sbjct 403 DGQLAEQVIRPTGVLDPLVEVRPTQGQVDDLLAEIRI------RAKKQERVLITTLTKRM 456
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ L +++ N ++ L ++ + + I+ + G++++L+ ++
Sbjct 457 AEDLTDYLAEND----VRVRYL--------HSEIHSIERIEIIQDLRL-GEYDVLVGVNL 503
Query 700 ADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 753
EG+D+ + +LV++ + +IQT GR R + A +
Sbjct 504 LREGLDLPEVSLVVILDADKEGFLRAERSLIQTIGRAARHVDG---MALLYADNLTDSMA 560
Query 754 NMYKEKMMNDSILRLQT 770
E I +
Sbjct 561 RAISETERRREIQKAYN 577
>sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium
(strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
OX=243273 GN=uvrB PE=3 SV=1
Length=656
Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats.
Identities = 53/353 (15%), Positives = 121/353 (34%), Gaps = 53/353 (15%)
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKR-ICKDLENLSQIQNREF 504
L +L ++ P + +S + K I +L K+ + + + L+ I N +
Sbjct 238 LNQLFEIKIGPADEYVVNQSDLDIAIKNIKQELQERVNYFNKQNLVERAQRLATITNHDL 297
Query 505 GTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK-------------YNDA 551
K + V+ ++ + F L YN
Sbjct 298 NDLKAWGFCSGVENYARHLELRMANSTPYSIFDYFKGDWLLVIDESHQTLPQLNGMYNTD 357
Query 552 L-----IISEHARMKDALDY-------LKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL-- 597
L +I R+ ALD L+ V +++++ +++L
Sbjct 358 LSRKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVR 417
Query 598 ESVSRDPS-NENPK---LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 653
+ DP PK +EDL + T T + V T + + L +++
Sbjct 418 PTYLVDPIIVVKPKDNQVEDLIEEIIN--QRQNNTRTFVTVLTIKMAENLTEYLKE---- 471
Query 654 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI 713
+K + + + + +++ + G++ L+ ++ EG+D+ + LV
Sbjct 472 RKIKVAYI--------HKDIKALERLLLINDLRR-GEYECLVGINLLREGLDVPEVALVC 522
Query 714 LYE-----YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
+++ + +IQ GR R + + ++ ++ I+ K +
Sbjct 523 IFDADIPGLPRDERSLIQIIGRAARNEHGRVVMYANHVTEQMQKAIDETKRRR 575
Score = 37.8 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 36/250 (14%), Positives = 91/250 (36%), Gaps = 44/250 (18%)
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ-QKSVFSKYFERHGYRVTGI-SGATAE 330
+++ + L++ +V +F N+ + E+ Q+ + + + G SG
Sbjct 261 IAIKNIKQELQE-------RVNYF-NKQNLVERAQRLATITNHDLNDLKAWGFCSGVENY 312
Query 331 NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMF 388
+E + N TP + + K L++ DE H T YN +
Sbjct 313 ARHLELRMAN-----STPYSIFDYFKGDW--------LLVIDESHQTLPQLNGMYNTDLS 359
Query 389 NY----------------LDQKLGGSSGPLPQVIGLTASVGVGDAK-NTDEALDYICKLC 431
+ +VI ++A+ + + + ++ + +
Sbjct 360 RKQSLIDYGFRLPSALDNRPLSFAELQQKMQKVIYVSATPRDKEISLSQNNVIEQLVRPT 419
Query 432 ASLDASVIATVKHNLEE--LEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRI 489
+D ++ K N E +E+++ + Q R + ++ K + + +++ + I
Sbjct 420 YLVDPIIVVKPKDNQVEDLIEEIINQRQNNTRTFVTVLTIKMAENLTEYLKERKIKVAYI 479
Query 490 CKDLENLSQI 499
KD++ L ++
Sbjct 480 HKDIKALERL 489
>sp|Q326H6|RAPA_SHIBS RNA polymerase-associated protein RapA OS=Shigella
boydii serotype 4 (strain Sb227) OX=300268 GN=rapA
PE=3 SV=1
Length=968
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 64/522 (12%), Positives = 152/522 (29%), Gaps = 87/522 (17%)
Query 241 FKPRNY---QLELALPAMKGK---------NT------------IICAPTGCGKTFVSLL 276
++ R Y Q + ++G+ N ++ G GKT + +
Sbjct 130 YRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGM 189
Query 277 ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ 336
I L G +V+ + Q + R R +
Sbjct 190 ILHQQL---LSGAAERVLIIVPE----TLQHQWLVEMLRRFNLRFALFDDERYAEAQHDA 242
Query 337 I--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQHPYNMIMFNYLD 392
+ ++I + + ++ + + L++ DE H+ S+ P
Sbjct 243 YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE------Y 296
Query 393 QKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCAS--LDASVIATVKHNLEELE 450
Q + + +P V+ LTA+ + + + L + D + + N +
Sbjct 297 QAIEQLAEHMPGVLLLTATP---EQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVA 353
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE-FGTQKY 509
V +++S+ ++ +++ + +D+E L Q N + Q
Sbjct 354 DAVAM-----LLAGNKLSNDELNMLGEMIGE---------QDIEPLLQAANSDSEDAQSA 399
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
Q +V++ K H K ++ + K
Sbjct 400 RQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK- 458
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
S A + + Q FE + + L +
Sbjct 459 --SAEDRARDMLYPERIYQEFE-----------GDNATWWNFDPRVEWLMGYLTSHRSQK 505
Query 630 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KAS 688
++ A L+ + ++ + + GM++ + F +
Sbjct 506 VLVICAKAATALQLEQVLRER---EGIRAAVF--------HEGMSIIERDRAAAWFAEED 554
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+L+ + + EG + + +++++ N + Q GR
Sbjct 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGR 596
>sp|B0URM0|RAPA_HISS2 RNA polymerase-associated protein RapA OS=Histophilus
somni (strain 2336) OX=228400 GN=rapA PE=3 SV=1
Length=966
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 66/474 (14%), Positives = 148/474 (31%), Gaps = 67/474 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I + L + +V+ + Q F+ +F
Sbjct 179 GLGKTIEAGMILQQQL---LAEKVQRVLILVP-ETLQHQWLVEMLRRFNLHFSLFDEERC 234
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH- 381
++V V N +II LV K+ F L+I DE H+ +
Sbjct 235 ADFDNPEDHVEANPFVAEN-LIICALDWLVQQPKRAKQALAGEFDLLIVDEAHHLTWSED 293
Query 382 ----PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDAS 437
Y ++M S +P V+ LTA+ ++ + +L LD +
Sbjct 294 SPSIAYELVMQ---------LSAVIPAVLLLTATPEQLGQQS------HFARL-HLLDPN 337
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLS 497
+ + +E +Q Q + V+S +S+ + Q + I L+ ++
Sbjct 338 RFYSYRAFEKEQQQY----QPVAKAVQSLLSEHILTVEEQNHLAELLSEQDIEPMLKVIN 393
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
+ E ++ + + + + R Y+ +
Sbjct 394 SQADTE------QKQVARGELMSNLIDRHGTGRLLFRNTRQGVQGFPHRIYHQIKLDLPT 447
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
++A++ LK ++ EQ + + + +
Sbjct 448 QY-QNAINVLK-MLGEIKDPELFYPEQIFQKM-------------NADATWWRFDPRVDW 492
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E ++ + L+ + + ++ + + M++
Sbjct 493 LIHLVKSLREEKILVICQDAITATQLEQALR---EKEGIRSAVF--------HENMSIIE 541
Query 678 QKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + +L+++S+ EG + ++L+ N + Q GR
Sbjct 542 RDRASAYFAQQEEGAQVLLSSSIGSEGRNFQFACHLVLFHLPNNPDLLEQCIGR 595
>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2) OX=315456
GN=mfd PE=3 SV=1
Length=1142
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/245 (18%), Positives = 88/245 (36%), Gaps = 36/245 (15%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
+IC G GKT V+ + + K +V + Q S F + F+ G
Sbjct 602 LICGDVGFGKTEVA-MRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN 660
Query 321 VTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
+ +S + + E +III T +L N L+I DE +
Sbjct 661 IKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKN------TKFFNLKLLIIDEEQH 714
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
F ++ S V+ ++A+ + ++ + +L
Sbjct 715 -----------FGVGQKEFLKSLKSSSHVLAMSATPI---PRTLQMSMTGLKEL------ 754
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF----KYIIAQLMRDTESLAKRICKD 492
S+IAT N E+ +V P ++ + + F + + ++D E + K++ +
Sbjct 755 SIIATPPLNRLEVRTMV-MPFDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIEKQLKQI 813
Query 493 LENLS 497
+ LS
Sbjct 814 VPELS 818
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 31/150 (21%), Positives = 61/150 (41%), Gaps = 18/150 (12%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGN-PKLSFLKPGILTGRGKTNQNTGMTL 675
+L+E + V ++ ++ ++ P+LS+ + MT
Sbjct 783 LLREHFRGGRSFYV---VPRIKDIEDIEKQLKQIVPELSY-----------KIAHGKMTP 828
Query 676 PAQKCILDAFKASGDHNILIATSVADEGIDIAQCN-LVILYEYVGNVIKMIQTRGR-GRA 733
++ F +G +IL++T++ + GIDIA+ N +VI + + ++ Q RGR GR
Sbjct 829 SKIDEVMSEF-YAGKFDILVSTTIIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIGRG 887
Query 734 RGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
+ LT + E + N
Sbjct 888 KVRGYAYLTVASHKKMTSHSLRRLEIIQNS 917
>sp|Q2GID5|UVRB_ANAPZ UvrABC system protein B OS=Anaplasma phagocytophilum
(strain HZ) OX=212042 GN=uvrB PE=3 SV=1
Length=653
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 60/371 (16%), Positives = 127/371 (34%), Gaps = 32/371 (9%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII-----A 476
+ ++ I ++ +L +V K + V P+ + SRI ++ + +
Sbjct 217 DVIESIQEVDNNLGIAVANLEKVKVFPNSHYVT-PRPTLMQALSRIEEELQECVINYRKN 275
Query 477 QLMRDTESLAKRICKDLENLSQIQ--------NREFGTQKYEQWIVTVQKACMVFQMPDK 528
+ + E + +R D+E + + +R + + T+ V +
Sbjct 276 NKIIEAERILERTKFDIEMMKETGTCKGIENYSRYLCGKAAGEPPNTLLDYLPVDSLMFI 335
Query 529 DEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQ 588
DE S I + + A +I+ R+ ALD F + + T
Sbjct 336 DE-SHITIPQIRSMYNGDRVRKANLITHGFRLPSALDNRPLTFEEWESRKTTLVYVSATP 394
Query 589 RFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN---PETITILFVKTRALVDALKN 645
E + V ++ +C + + + E+ + R LV AL
Sbjct 395 GKYETERTSGVVVEQLIRPTGLVDPICIVKKASGQIADVVNESQATISEGYRVLVTALTK 454
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ N + GI ++ + + I+ + +G+ ++LI ++ EG+D
Sbjct 455 KMAENLSEHMREIGIKV----AYLHSDVKTLERMDIIAQLR-TGEIDVLIGVNLLREGLD 509
Query 706 IAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEK 759
I +C LV + + + ++QT GR R + L A + K E
Sbjct 510 IPECALVCILDADKEGFLRSETSLVQTIGRAARNMNGRVIL---YADRVTKSMKAAIDET 566
Query 760 MMNDSILRLQT 770
++
Sbjct 567 NRRRAVQESYN 577
>sp|Q2UMY7|MAK5_ASPOR ATP-dependent RNA helicase mak5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=mak5
PE=3 SV=1
Length=757
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 34/202 (17%), Positives = 73/202 (36%), Gaps = 18/202 (9%)
Query 189 EKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFK-PRNYQ 247
EK ++ E + ++ + + +Q ++D + E+ E+ F P + Q
Sbjct 153 EKAVESKEDKGIKSGLSFAALQ-EEEDDGADVSAWESLGLSPEILAGISKMKFTTPTSVQ 211
Query 248 LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK----------VVFFA 297
P + G++ I A TG GKT + + + + + K + +
Sbjct 212 KACIPPILDGRDVIGKASTGSGKTLAFGIPILEYYLEKLRSKTQKDSEKTETTPIALVLS 271
Query 298 NQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNN 354
+ Q + R+ ++G + ++++ N DI+I TP +
Sbjct 272 PTRELAHQLAKHIGEVVSHAPGVNARIALLTGGLSLQKQ-QRVLTNADIVIGTPGRVWEV 330
Query 355 LK--KGTIPSLSIFTLMIFDEC 374
L G I + ++ DE
Sbjct 331 LSSGHGLIRKMQAIKFLVIDEA 352
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/123 (20%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
L +P+ T++F + + V + ++ M
Sbjct 476 FLYTLLLYHPKHRTLVFTNSISAVR------------RLTQLLQTLQLPALALHSSMAQK 523
Query 677 AQKCILDAFKASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 733
A+ ++ F + IL+AT VA G+DI + V+ Y + GR RA
Sbjct 524 ARLRSVERFSSPSSDPSSILVATDVAARGLDIKGIDFVVHYHAPRTADAYVHRSGRTARA 583
Query 734 RGS 736
S
Sbjct 584 GAS 586
>sp|P15424|MS116_YEAST ATP-dependent RNA helicase MSS116, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) OX=559292 GN=MSS116 PE=1 SV=1
Length=664
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/290 (16%), Positives = 94/290 (32%), Gaps = 30/290 (10%)
Query 516 VQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVR 575
+ +A + ++ +D+ I L S L+ S A + D + L + N +
Sbjct 266 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFS--ATLDDKVQKLANNIMNKK 323
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVK 635
F + E++ +SV N + I ++ + I+F
Sbjct 324 ECLFLDTVDKNEPEAHERID--QSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAP 381
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
T L + ++ K + +T + ++ FK + IL+
Sbjct 382 TVKFTSFLCSILKNEFKKDLPILEF---------HGKITQNKRTSLVKRFKKD-ESGILV 431
Query 696 ATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAGVIEKEQ 752
T V G+D + V+ + I GR R GS + + +E
Sbjct 432 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 491
Query 753 INMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPD 802
E N I + + ++ + + + + E+P+ + D
Sbjct 492 -----EDAKNIVIAKQEKYEPSE--------EIKSEVLEAVTEEPEDISD 528
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 66/389 (17%), Positives = 130/389 (33%), Gaps = 24/389 (6%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQQKSVFS 311
+ + + I A TG GKTF L+ HL KF K V A + Q ++
Sbjct 142 SSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 201
Query 312 K----YFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIF 366
K + Y + G T + ++ + +I+I TP L++ L+K +
Sbjct 202 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 261
Query 367 TLMIFDECHNTS----KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ DE + + L++K S+ + ++ +A++ K +
Sbjct 262 DYKVLDEADRLLEIGFRDD--LETISGILNEKNSKSADNIKTLL-FSATLDDKVQKLANN 318
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
++ K C LD + + E ++Q V +KF + + + K I +
Sbjct 319 IMNK--KECLFLDTVDKNEPEAH-ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYK 375
Query 483 ESLAKRICKDLENLSQIQNREFGTQ----KYEQWIVTVQKACMVFQMPDKDEESRICKAL 538
+ K L I EF ++ I ++ +V + + +C +
Sbjct 376 AIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV 435
Query 539 FLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELE 598
++ L I + +Y+ R+ + + ++ELE
Sbjct 436 GARGMDFPNVHEVLQI---GVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 492
Query 599 SVSRDPSNENPKLEDLCFILQEEYHLNPE 627
+ K E I E E
Sbjct 493 DAKNIVIAKQEKYEPSEEIKSEVLEAVTE 521
>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20
/ Rd) OX=71421 GN=mfd PE=3 SV=1
Length=1146
Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 55/300 (18%), Positives = 105/300 (35%), Gaps = 64/300 (21%)
Query 165 ENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSE 224
E W K+ + A EK R+ +EL ++ + + K + + Q F P + +
Sbjct 550 EAWAKSRQKAAEKIRDVAAEL--LDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQ 607
Query 225 NSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSL----LICEH 280
+ +SD + P + ++C G GKT V++ L +
Sbjct 608 EMAINAVISD---------------MCQPKAMDR--LVCGDVGFGKTEVAMRAAFLAVMN 650
Query 281 HLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVEN 340
H +V + +Q F F V +S +QI+EN
Sbjct 651 H---------KQVAVLVPTTLLAQQHYENFKDRFANLPVNVEVLSR-FKTAKEQKQILEN 700
Query 341 -----NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKL 395
DI+I T +++ +++K + L+I DE H F ++
Sbjct 701 LAEGKVDILIGTHKLIQSDVK------FNDLGLLIIDEEHR-----------FGVGQKEK 743
Query 396 GGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYK 455
++ LTA+ + + A++ I D S+I+T ++ V +
Sbjct 744 IKQLRANIDILTLTATPI---PRTLNMAMNGIR------DLSIISTPPARRLSIKTFVRQ 794
Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 45/98 (46%), Gaps = 12/98 (12%)
Query 658 PGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVI--LY 715
++ G G+ M + ++ F +N+L+ +++ + GID+ N +I
Sbjct 838 ARVIVGHGQ------MRERELERVMSDF-YHQRYNVLVCSTIIETGIDVPTANTIIIERA 890
Query 716 EYVGNVIKMIQTRGR-GR-ARGSKCFLLTSNAGVIEKE 751
+ + ++ Q RGR GR + +LLT ++ K+
Sbjct 891 D-HFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKD 927
>sp|Q7MHE6|RAPA_VIBVY RNA polymerase-associated protein RapA OS=Vibrio
vulnificus (strain YJ016) OX=196600 GN=rapA PE=3 SV=1
Length=969
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 63/474 (13%), Positives = 154/474 (32%), Gaps = 65/474 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I G+ +++ + Q F+ +F
Sbjct 180 GLGKTIEAGMIIHQQ---VLLGRAERILIVVP-ETLQHQWLVEMMRRFNLHFSIFDEERC 235
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SKQ 380
+ A ++N + ++ + L + K+ + + L++ DE H+ S+
Sbjct 236 IEAFAESDNP-----FDTQQYVLCSLDFLRKSRKRFEQALEADWDLLVVDEAHHLEWSQD 290
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
P Q + G + P V+ LTA+ ++ + +L LD+
Sbjct 291 KPSRG------YQVVEGLAERTPGVLLLTATPEQLGRES------HFARL-RLLDSDRFY 337
Query 441 TVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQI 499
+EE Q +++D+ K I +L+ +E + + + +E+ +
Sbjct 338 DYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITELL--SEQDVEPLFRIIESNADE 395
Query 500 QNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
+++ Q+ ++ V + R +
Sbjct 396 ESKAIARQELIDNLMDRHGTGRVL------------------FRNTRAAIKGFPVRNVHL 437
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN--PKLEDLCFI 617
+ + + +++R +G + R + L E E+ + +
Sbjct 438 LP--MPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDCRVNW 495
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L E+ ++ + L+ + ++ + + GM++
Sbjct 496 LLEKLKAQRSEKVLVIASRASTALQLEQALRER---EGIRATVF--------HEGMSILE 544
Query 678 QKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G +LI + + EG + N +++++ N + Q GR
Sbjct 545 RDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|Q9K6X9|UVRB_HALH5 UvrABC system protein B OS=Halalkalibacterium
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344
/ JCM 9153 / C-125) OX=272558 GN=uvrB PE=3 SV=1
Length=660
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 58/389 (15%), Positives = 131/389 (34%), Gaps = 55/389 (14%)
Query 457 QKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQNREFGTQKYEQ 511
++ ++ I + + + +L + + L +R DLE + ++ G + Y +
Sbjct 253 EEKLKRATKSIEAELEERLKELHDRGKLLEAQRLEQRTRYDLEMIHEMG-FCSGIENYSR 311
Query 512 WIVTVQKACMVFQMPDKDE--------ESRICKALFLYTSHLRKYNDALIISEHARMKDA 563
+ + + + D ES + + + +++ R+ A
Sbjct 312 HLTLRKAGETPYTLLDFFPDDFLIIIDESHVTIPQIRAMYNGDQARKGVLVDHGFRLPSA 371
Query 564 LD----YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE------- 612
LD ++F V A F E + +E + R +P +E
Sbjct 372 LDNRPLKFEEFEHKVHQAVFVSATPG-PYELEHTPEMVEQIIRPTGLLDPVIEVRPIEGQ 430
Query 613 --DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
DL + E N ++ T+ + + L ++++ G +
Sbjct 431 IDDLIGEINERVAKNE--RVLVTTLTKKMAEDLTDYLKE------------VGIKVRYLH 476
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMI 725
+ + + I+ + G N+L+ ++ EG+DI + +LV + + +I
Sbjct 477 SEVKTLERIEIIRQLRL-GTFNVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLI 535
Query 726 QTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM-MNDSILRLQTWDEAVFREKILH- 782
QT GR R + + I+ K + + + R ++I
Sbjct 536 QTIGRAARNANGYVIMYADRMTKSMQIAIDETKRRRSIQEEYNRKHGITPKTIEKRIPDV 595
Query 783 IQTHEKFIRDSQE----KPKPVPDKENKK 807
I+ D +E PK K+ ++
Sbjct 596 IKATAMVAEDGEEYTSHAPKQKMSKKERE 624
>sp|Q0IE10|UVRB_SYNS3 UvrABC system protein B OS=Synechococcus
sp. (strain CC9311) OX=64471 GN=uvrB PE=3 SV=1
Length=679
Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 93/673 (14%), Positives = 200/673 (30%), Gaps = 125/673 (19%)
Query 232 VSDTNLYSPFKPRNYQLELALPAMKGKN------TIICAPTGCGKTFVSLLICEHHLKKF 285
+ L +P+ P+ Q ++G N T++ A TG GKTF +
Sbjct 1 MPAYELSAPYTPKGDQPTAISKLVEGVNGGERYQTLLGA-TGTGKTFTMANVI------- 52
Query 286 PQGQKGK-VVFFANQIPVYEQQKSVFSKYFERHGYRVTGI-------------------- 324
Q G+ + A+ + Q + ++F +
Sbjct 53 --AQTGRPALVLAHNKTLAAQLCNELREFFPHNAVEYFISYYDYYQPEAYVPVSDTYIAK 110
Query 325 ------SGATAENVPVEQIVENNDIIILTP-------QILVNNLKKGTIPSL-SIFTLMI 370
+ + E D+I++ I LK + L
Sbjct 111 TASINEEIDMLRHSATRSLFERRDVIVVASISCIYGLGIPSEYLKAAVPFKVGETLNL-- 168
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKL 430
+ ++ N + + +V G +G + ++
Sbjct 169 ---------RGSLRDLVNNQYSRNDTEAGRGRFRVKGDVLEIGPAYDDRLVRVELFGDEV 219
Query 431 CASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC 490
A V T L+ L+ + P K F + R++D K I ++L E
Sbjct 220 EAI--RYVDPTTGEILQSLDAISIYPAKHFVTPKERLNDAVKAIRSELKERLE-FLNGEG 276
Query 491 KDLENLSQIQNREFGTQKYEQ--WIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
K LE Q + + +Q + V+ + C + L
Sbjct 277 KLLEAQRLEQRATYDLEMLQQIGYCNGVENYARHLAGREPGSAPE-CLIDYFPDDWLLIV 335
Query 549 NDALIIS---------EHARMKDALDY------------LKD-----------FFSNVRA 576
+++ + + AR K +D+ LK F S
Sbjct 336 DESHVTCSQLLAMYNGDQARKKVLIDHGFRLPSAADNRPLKSEEFWSKAKQTVFVSATPG 395
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
E+ + + + + +++DL +++ + + ++ T
Sbjct 396 NWEMEVSEGQVAEQVIRPTGVLDPLVEVRPTTGQVDDLLGEIRD--RASKKQRVLVTTLT 453
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 696
+ + + L +++ N ++ L ++ + + I+ + G++++L+
Sbjct 454 KRMAEDLTDYLAENK----VRVRYL--------HSEIHSIERIEIIQDLRL-GEYDVLVG 500
Query 697 TSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGR-GRARGSKCFLLTSNAGVIEK 750
++ EG+D+ + +LV + + +IQT GR R K L A +
Sbjct 501 VNLLREGLDLPEVSLVAILDADKEGFLRAQRSLIQTIGRAARHVEGKALL---YAETMTD 557
Query 751 EQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLC 810
+E I + + + + K D + L+
Sbjct 558 SMAKAIEETERRRKIQHTYNEKHGI-TPTAAGKKASNSILSFLELSRKLKADGPDADLVK 616
Query 811 RKCKALACYTADV 823
KA+ DV
Sbjct 617 VAGKAVQALEEDV 629
>sp|P37954|UVRB_BACSU UvrABC system protein B OS=Bacillus subtilis
(strain 168) OX=224308 GN=uvrB PE=1 SV=2
Length=661
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 51/371 (14%), Positives = 129/371 (35%), Gaps = 57/371 (15%)
Query 410 ASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 469
AS V A+ ++A+ I K ELE+ + + + +E++ +
Sbjct 246 ASHFVTRAEKMEKAIQNIEK------------------ELEEQLKVMHENGKLLEAQRLE 287
Query 470 KFKYIIAQLMRD------TESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVF 523
+ ++MR+ E+ ++ + + ++ + +++ V ++ +
Sbjct 288 QRTRYDLEMMREMGFCSGIENYSRHLTLRPPGSTPYTLLDYF---PDDFMIVVDESHVTI 344
Query 524 ----QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGF 579
M + D+ + + N L E + + Y+
Sbjct 345 PQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHT 404
Query 580 DEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRAL 639
DE+ + + + L D +++DL +Q N ++ T+ +
Sbjct 405 DEMVEQIIRPTG-----LLDPLIDVRPIEGQIDDLIGEIQARIERNE--RVLVTTLTKKM 457
Query 640 VDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV 699
+ L ++++ +K L ++ + + I+ + G +++L+ ++
Sbjct 458 SEDLTDYLKEI----GIKVNYL--------HSEIKTLERIEIIRDLRL-GKYDVLVGINL 504
Query 700 ADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 753
EG+DI + +LV + + + +IQT GR R + + + I
Sbjct 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEIAI 564
Query 754 NMYKEKMMNDS 764
N K +
Sbjct 565 NETKRRREQQE 575
>sp|A8FQW4|RAPA_SHESH RNA polymerase-associated protein RapA OS=Shewanella
sediminis (strain HAW-EB3) OX=425104 GN=rapA PE=3
SV=1
Length=968
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 69/478 (14%), Positives = 146/478 (31%), Gaps = 73/478 (15%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILVIVP---------DTLRHQWLVEMLRRFNLKF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNT--S 378
+ + + +ND T Q+ L+ K+ + + LM+ DE H+ +
Sbjct 227 SVFDEDRCIEAYADNDNPFYTEQLVICSLELLRKKKRLEQALDADWDLMVVDEAHHLEWT 286
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
+ P + + + S +P V+ LTA+ D
Sbjct 287 EDAP------SRAYRVVEALSEVVPGVLLLTATP----------------------DQLG 318
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+ L L+ P +F+ + +A S K + +L++
Sbjct 319 HQSHFARLRLLD-----PDRFYDYEAFLKEESSYKDVASAADALASGNKLPDDAINSLTE 373
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ + + T ++ Q +DE + L + + A +
Sbjct 374 LLSEKDIT--PSINVIQATDIDPDQQQDARDELLQELLDRHGTGRVLYRNSRASVKGFPT 431
Query 559 RMKDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN---PKLED 613
R+ +A + + R D + ++ L E + +D + + K +
Sbjct 432 RIFNAYPQAMPSQYVTAARVGAMMNGHLDTQGKVKQALSP-EKIYQDFDSNSASWWKFDP 490
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
L N ++ +L+ + G T + GM
Sbjct 491 RVDWLINFLKENRRKKVLIIASQAETALSLEEALRTRE-----------GIQTTVFHEGM 539
Query 674 TLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
++ + F + +G LI + + EG + + +IL++ N + Q GR
Sbjct 540 SIIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASQLILFDLPLNPDLLEQRIGR 597
>sp|P75172|Y623_MYCPN Probable ATP-dependent RNA helicase MG425
homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129
/ Subtype 1) OX=272634 GN=MPN_623 PE=3 SV=1
Length=450
Score = 62.5 bits (150), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/153 (23%), Positives = 67/153 (44%), Gaps = 4/153 (3%)
Query 222 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 281
L + + + D N+ P + QL + ++ +N I+ +PTG GKT V +
Sbjct 8 LGVSPALIATLKDNNINQPTTIQ--QLAIPQ-FLQHQNLIVHSPTGTGKTAVFGIPVIET 64
Query 282 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN 341
L K P + + A + EQ K+ F + + +V + G ++Q+
Sbjct 65 LLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQP 124
Query 342 DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+I++ T +++ L++G I + L I DE
Sbjct 125 EIVVGTMGRVMDLLERGVIKFEHLEHL-IIDEV 156
Score = 56.7 bits (135), Expect = 6e-07, Method: Composition-based stats.
Identities = 54/276 (20%), Positives = 103/276 (37%), Gaps = 40/276 (14%)
Query 539 FLYTSHLRKYNDALIISE--HARMKDALDYLKDF-----FSNVRAAGFDEIEQDLTQRFE 591
F + HL L++ ++ D L ++ F +S E + +T+
Sbjct 145 FEHLEHLIIDEVDLMLDRGFKRKLFDLLSRIEKFEQIAVYSASYNEETIETAKQITKNGI 204
Query 592 EKL-QELESVSRDPSNENPKL--EDLCFILQE-----EYHLNPETIT---ILFVKTRALV 640
EL+ + +P N KL + +C++ Y L +T I+F T+ LV
Sbjct 205 FLAAPELKQNAPEPDN---KLIDQFVCYLFSNRKKQALYSLVSQTRAKSIIVFCDTKKLV 261
Query 641 DALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 700
D L ++ N ++ + ++ L F + +L+ T +
Sbjct 262 DELCIFLRKNDVKTYP------------LHGDKAQFIRERNLKLFANTTAPIVLVTTDLI 309
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLTSNAG---VIEKEQIN 754
GI + ++V+ Y N + GR GR +GS TS+ + EQ+N
Sbjct 310 GRGIHVEGVDMVVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAFLKLLEQVN 369
Query 755 MYKEKMMNDSILRLQTW-DEAVFREKILHIQTHEKF 789
+ + LRL + ++ L +Q+ +K
Sbjct 370 DKRISPLRPMRLRLIPLKCKTQPKKGKLSLQSVQKI 405
>sp|A9MQF6|RAPA_SALAR RNA polymerase-associated protein RapA OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
OX=41514 GN=rapA PE=3 SV=1
Length=968
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 66/492 (13%), Positives = 138/492 (28%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G +V+ +
Sbjct 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQL---LSGAAERVLIIVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + E ++I + N ++
Sbjct 211 LQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLC 270
Query 363 LSIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNT 420
+ + L++ DE H+ S P M + + +P V+ LTA+
Sbjct 271 DAEWDLLVVDEAHHLVWSIDAPSREYM------AIEQLAERVPGVLLLTATP-------E 317
Query 421 DEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR 480
++ LD + + Q V + QK +R V ++
Sbjct 318 QLGMESHFARLRLLD-------PNRFHDFAQFVEE-QKNYRPVADAVAMLLAGNKLSNDE 369
Query 481 DTESLAKRICKDLENLSQIQNREFGT-QKYEQWIVTVQKACMVFQMPDKDEESRICKALF 539
+D+E L Q N + Q Q +V++ K
Sbjct 370 LNRLGDLIGEQDIEPLLQAANSDRDDAQAARQELVSMLMDRHGTSRVLFRNTRNGVKGFP 429
Query 540 LYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELES 599
H K ++ + K S A + + Q FE
Sbjct 430 KRELHTVKLPLPTQYQTAIKVSGIMGARK---SAEDRARDMLYPEQIYQEFE-------- 478
Query 600 VSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPG 659
+ + L + ++ L+ + ++
Sbjct 479 ---GDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLRER---EGIRAA 532
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ + GM++ + F + +L+ + + EG + + +++++
Sbjct 533 VF--------HEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|P26802|DDX51_DROME Probable ATP-dependent RNA helicase Dbp73D
OS=Drosophila melanogaster OX=7227 GN=Dbp73D PE=2 SV=3
Length=687
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 70/191 (37%), Gaps = 20/191 (10%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
+ F + L ++ + K L+G ++ + L F A+
Sbjct 446 RFLCFTNSSDQATRLTFVLKVLFQKYSTKVSELSG--------NLSAKVRNERLRDF-AA 496
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYV---GNVIKMIQTRGRGRARGSKCFLLTSNA 745
G N LI + GID+A ++V+ YE I + R +G+ +LT
Sbjct 497 GKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
Query 746 GVIEKEQINMYKEKMMND-------SILRLQTWDEAVFREKILHIQT-HEKFIRDSQEKP 797
+ K+ ++ + + + I + EA+ + ++ ++K ++
Sbjct 557 MTLFKKILSDANKGLGEEIHVSPDIEIQHAVEYKEALAGLRSEKVKNKNQKMAEKNRVAT 616
Query 798 KPVPDKENKKL 808
K + K+ ++
Sbjct 617 KALIHKKQEET 627
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/144 (22%), Positives = 50/144 (35%), Gaps = 23/144 (16%)
Query 239 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFAN 298
PF+PR+ + APTG GKT + L + + +V
Sbjct 179 PPFRPRD--------------ICVSAPTGSGKTLAFAIPIVQLLSQRVDCKVRALVVL-P 223
Query 299 QIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENN--------DIIILTPQI 350
+ Q V S+ + V +S E++VE DI++ TP
Sbjct 224 VAELALQVYRVISELCSKTELEVCLLSKQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGR 283
Query 351 LVNNLKKGTIPSLSIFTLMIFDEC 374
LV++L L ++ DE
Sbjct 284 LVDHLHATKGFCLKSLKFLVIDEA 307
>sp|Q2NL08|DDX55_BOVIN ATP-dependent RNA helicase DDX55 OS=Bos
taurus OX=9913 GN=DDX55 PE=2 SV=1
Length=601
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 57/327 (17%), Positives = 105/327 (32%), Gaps = 53/327 (16%)
Query 449 LEQVVYKPQKFFRKVESR--ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+E+++ + ++ F+K + I + + Q+ K + I R G
Sbjct 67 IEEILLRREEKFKKSQVGAIIITPTRELAVQIEEVLSHFTKPF-PQFSQILWIGGRNPGE 125
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKD---- 562
++ P + E+ KA L + + + L++ E R+ D
Sbjct 126 DVAR---FKELGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLEVLVLDEADRLLDMGFE 182
Query 563 -ALDYLKDFFSNVRAAGFDEIEQ--------------DLTQRFEEKLQELESVSRDPS-- 605
+++ + +F R G Q + +EK S + PS
Sbjct 183 TSINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPSRL 242
Query 606 -------NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKP 658
+ K L L+ + ++F T A V+ +E K +
Sbjct 243 ENHYMVCKADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALETLVKGVKIMC 298
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
+ M K ++ F+ IL+ T V GIDI + N V+ Y+
Sbjct 299 ----------IHGKMKYKRNKIFME-FRKL-QSGILVCTDVMARGIDIPEVNWVLQYDPP 346
Query 719 GNVIKMIQTRGR-GR--ARGSKCFLLT 742
N + GR R GS L
Sbjct 347 SNASAFVHRCGRTARIGHGGSALVFLL 373
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/132 (23%), Positives = 52/132 (39%), Gaps = 14/132 (11%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHL----KKFPQGQKGKVVFFANQIPVYEQQKSVF 310
MK K+ A TG GKT ++ E L +KF + Q G ++ + Q + V
Sbjct 44 MKNKDVAAEAVTGSGKTLAFVIPIEEILLRREEKFKKSQVGAII-ITPTRELAVQIEEVL 102
Query 311 S---KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-----GTIPS 362
S K F + + E+V + + N II+ TP L + ++
Sbjct 103 SHFTKPFPQFSQILWIGGRNPGEDVARFKELGGN-IIVATPGRLEDMFRRKAEGLDLASC 161
Query 363 LSIFTLMIFDEC 374
+ +++ DE
Sbjct 162 VRSLEVLVLDEA 173
>sp|Q0CF43|DBP7_ASPTN ATP-dependent RNA helicase dbp7 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=dbp7
PE=3 SV=2
Length=769
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/78 (22%), Positives = 33/78 (42%), Gaps = 2/78 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + L +F + D ++L+ T VA G+D+ +LVI Y+ + + G
Sbjct 509 HGSLPQHVRTSTLASFARNKDASVLVCTDVASRGLDLPNVDLVIEYDPAFSAEDHLHRIG 568
Query 730 R-GR-ARGSKCFLLTSNA 745
R R R + +
Sbjct 569 RTARLGRDGRALIFLQPG 586
Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 41/134 (31%), Gaps = 22/134 (16%)
Query 262 ICAPTGCGKTFVSLLICEHHLKK---------------------FPQGQKGKVVFFANQI 300
I A TG GKT LL + + + A
Sbjct 186 IQAETGSGKTLAYLLPLVQRIMALSHPTNRTDATSTTDAEGQPVVHRDSGLFAIVLAPTR 245
Query 301 PVYEQQKSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 359
+ +Q V H + G + ++ + +I++ TP L ++L+
Sbjct 246 ELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTQ 305
Query 360 IPSLSIFTLMIFDE 373
+S ++ DE
Sbjct 306 ALDVSNVRWLVLDE 319
>sp|A8F0V9|UVRB_RICM5 UvrABC system protein B OS=Rickettsia massiliae
(strain Mtu5) OX=416276 GN=uvrB PE=3 SV=1
Length=661
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 89/620 (14%), Positives = 188/620 (30%), Gaps = 109/620 (18%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVT--- 322
TG GKTF + +++ + + A+ + Q S F ++
Sbjct 40 TGSGKTF----TMANIIERTNRP----TLIMAHNKTLAAQIYSEMKSIFPKNAVEYFVSY 91
Query 323 ------------GISGATAENVPVEQI-----------VENNDIIILTPQILVNNLKKGT 359
+ ++ EQI +E D+I+++ + L
Sbjct 92 YDYYQPEAYIARTDTFIEKDSSINEQIDLMRHAATRSLLERRDVIVVSSVSCIYGLGSPD 151
Query 360 IPSLSIFTLMIFDECHNTSKQHPYNMIMFNY----LDQKLGGSSGPLPQVIGLTASVGVG 415
+ + L + +P + ++ + ++ G +V G +
Sbjct 152 LYYQMMVNL-------EPGQSYPRDQLLNDLINLQYERNDIGFERGCFRVKGDNIDIFPS 204
Query 416 DAKNTD-------EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 468
N L+YI + A + K + V PQ+ S I
Sbjct 205 HYSNKAWRLSFFGNELEYIHEFDPLTGAKLAKLDKAMVFGNSHFV-MPQETVNNAISGIE 263
Query 469 DKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN-------REFGTQK-------- 508
++ + + L +T+ L +R DLE L++ N F T +
Sbjct 264 EELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGNCKGVENYSRFFTGRNAGEPPPT 323
Query 509 -----YEQWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISEHAR 559
E ++ V ++ + M + D + + N L E +
Sbjct 324 LFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEHGFRLPSALDNRPLKFEEWEK 383
Query 560 MKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQ 619
+ ++ +L R L P+ ++EDL +Q
Sbjct 384 FRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLD--PECIIKPATN--QIEDLISEIQ 439
Query 620 EEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQK 679
+ ++ T+ + + L +++ K L ++ + +
Sbjct 440 T--TIAKGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL--------HSHVHTLERI 485
Query 680 CILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRA 733
IL + G +IL+ ++ EG+DI +C LV + + + + +IQT GR R
Sbjct 486 EILRDLR-QGTIDILVGINLLREGLDIPECGLVAILDADKEGFLRSEVSLIQTIGRAARN 544
Query 734 RGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFI-R 791
+ L I+K + + + I + EK +
Sbjct 545 SEGRVILYADKMTKSIDKAVSETLRRRQIQQEYNAKHGIIPKTINRTIHALAEFEKIDSK 604
Query 792 DSQEKPKPVPDKENKKLLCR 811
+++ + D K
Sbjct 605 LDKKQAHTLFDNPAKLKTHI 624
>sp|B8CIB4|RAPA_SHEPW RNA polymerase-associated protein RapA OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) OX=225849
GN=rapA PE=3 SV=1
Length=968
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 72/539 (13%), Positives = 164/539 (30%), Gaps = 78/539 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNT--S 378
+ + + +ND T Q+ L+ K+ + + LM+ DE H+ S
Sbjct 227 SVFDEDRCVEAYADNDNPFYTEQLVICSLELLRKKKRLEQALDADWDLMVVDEAHHLEWS 286
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
+ P + + + S +P V+ LTA+ D
Sbjct 287 EDAP------SRAYKVVEALSEVVPGVLLLTATP----------------------DQLG 318
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+ L L+ P +F+ ++ +A + + +L+Q
Sbjct 319 HQSHFARLRLLD-----PDRFYDYPSFLKEEESYKDVATAADALACGESLSSEAIASLTQ 373
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ + + + ++ A + ++E + L + + A +
Sbjct 374 LLSEKDISDSIN--LIQDASANADKRNQAREELLQELLDRHGTGRVLYRNSRASVKGFPT 431
Query 559 RMKDA--LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN---PKLED 613
R + + + R + D + + L E + +D + + K +
Sbjct 432 RNLHIHPQPMPEQYVTASRVSAMMNKHLDTNAKVRQVLSP-EKIYQDFDSGSASWWKFDP 490
Query 614 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
L + N ++ +L+ + G T + GM
Sbjct 491 RVDWLIDFLKTNRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGM 539
Query 674 TLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGR 732
++ + F + +G LI + + EG + + ++L++ N + Q GR
Sbjct 540 SIIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLD 599
Query 733 ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIR 791
G K ++ + +E++M L ++ IL + + +
Sbjct 600 RIGQK-----NDVEIHLPYLAGTAQERLMQWYHQGLNAFECTCPSGHILFGEFSGELLE 653
>sp|P0C9B0|VF509_ASFK5 Putative ATP-dependent RNA helicase QP509L
OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
OX=561445 GN=Ken-135 PE=3 SV=1
Length=509
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 49/285 (17%), Positives = 99/285 (35%), Gaps = 48/285 (17%)
Query 245 NYQLELALPAMKGKNTIIC--------APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
NYQ E+ K ++ TG GKT +++ I + L +
Sbjct 99 NYQQEMVD---KIHKKLLSPYGRFYLHLNTGLGKTRIAISIIQKLLYP--------TLVI 147
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ Q RV + A + + + D+I+ ++N L+
Sbjct 148 VPTKAIQIQWIDELKLLLPH--LRVAAYNNAACKKK--DITSKEYDVIVG----IINTLR 199
Query 357 KGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
K P F L++ DE H ++ + + + +L +++GL+A+
Sbjct 200 KKPEPFFEPFGLVVLDEAHELHSPENY------KIFWKIQLS-------RILGLSATPLD 246
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
L ++ + + S T + E+E + F + V
Sbjct 247 RPDGMDKIILHHLGQPQRT--VSPTTTFSGYVREIEYQGHP--DFVKPVCINEKVSAIAT 302
Query 475 IAQLMRDTE--SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQ 517
I +L++D L K L +L + +++GT + I+ V+
Sbjct 303 IDKLLQDPSRIQLVVNETKRLYSLHTAEPQKWGTNEPYGIIIFVE 347
>sp|Q6FST5|DBP6_CANGA ATP-dependent RNA helicase DBP6 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP6 PE=3 SV=1
Length=651
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 39/126 (31%), Gaps = 4/126 (3%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
T++FV++ L+ ++ K I+ +N +
Sbjct 461 SGGKTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAENRRLVTDFTKE- 519
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG---RGRARGSKCFLLT 742
N+LI T + GIDI VI Y+ + + + G R G +L
Sbjct 520 SLPNQTNVLITTDLMSRGIDIENIANVINYDVPISSQQYVHRCGRTARANKDGKAYNMLV 579
Query 743 SNAGVI 748
Sbjct 580 GKGEAQ 585
Score = 58.6 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L K +V+ + Q S+ E
Sbjct 248 DILVNASTGSGKTLAYSIPIIQTLSS-RTVNKLRVLIILPTKLLINQVFQTMSQLAEGTS 306
Query 319 YRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+T + N +++++ DI I TP LV++L +I SL ++ DE
Sbjct 307 LVITVSKLENSFNEEHKRLLKTEPDIFITTPGRLVDHLTNSSI-SLRNLKFLVLDEA 362
>sp|Q3KF38|UVRB_PSEPF UvrABC system protein B OS=Pseudomonas fluorescens
(strain Pf0-1) OX=205922 GN=uvrB PE=3 SV=1
Length=671
Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats.
Identities = 85/598 (14%), Positives = 183/598 (31%), Gaps = 130/598 (22%)
Query 248 LELALPAMKGKNTIICAPTGCGKTF-VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQ 306
+E + + + TG GKTF ++ +I + + P + A + Q
Sbjct 24 VEGIEAGLSHQTLLGV--TGSGKTFSIANVIAQ---VQRP------TLVLAPNKTLAAQL 72
Query 307 KSVFSKYFERHGYRV------------------TGISGATAENVPVEQ--------IVEN 340
F +F + T I + N +EQ ++E
Sbjct 73 YGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATKALLER 132
Query 341 NDIIILT----------PQILVNNLKKGTI-PSLSIFTLMIFDECHNTSKQHPYNMIMFN 389
D II+T P+ + + L L+ +
Sbjct 133 KDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALV--------------RRLADL 178
Query 390 YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN---- 445
+ + +V G V D + L+ I D V + +
Sbjct 179 QYTRNDMDFARATFRVRG-----DVIDIYPAESDLEAIR--IELFDDEVESISAFDPLTG 231
Query 446 --LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLA------------KRICK 491
+ +L + + P+ + + D + I +L E L +R
Sbjct 232 EVIRKLPRFTFYPKSHYVTPRETLLDAIEGIKVELQERLEYLRNNNKLVEAQRLEQRTRF 291
Query 492 DLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 551
DLE + ++ G + Y +++ + D + + S A
Sbjct 292 DLEMILELG-YCNGIENYSRYLSGRPAGAAPPTLYDYLPADALLVIDESHVS--VPQVGA 348
Query 552 LIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDLTQRF-----------EEKLQELE 598
+ + +R + ++Y S + FDE E Q E + +E
Sbjct 349 MYKGDRSRKETLVEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHAGRVIE 408
Query 599 SVSRDPSNENPKLE---DLCFILQEEYHLNP----ETITILFVKTRALVDALKNWIEGNP 651
V R +P++E L + + E ++ T+ + + L +++ +
Sbjct 409 QVVRPTGLVDPQVEVRPALTQVDDLLSEITKRVAVEERVLVTTLTKRMAEDLTDYLADH- 467
Query 652 KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 711
++ L ++ + + I+ + G ++L+ ++ EG+D+ + +L
Sbjct 468 ---GVRVRYL--------HSDIDTVERVEIIRDLRL-GTFDVLVGINLLREGLDMPEVSL 515
Query 712 VILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMND 763
V + + + +IQT GR R + L + I + +
Sbjct 516 VAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITGSMERAIGETERRRDKQ 573
>sp|Q6FU81|MS116_CANGA ATP-dependent RNA helicase MSS116, mitochondrial
OS=Candida glabrata (strain ATCC 2001 / BCRC 20586
/ JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=MSS116
PE=3 SV=1
Length=666
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/316 (17%), Positives = 108/316 (34%), Gaps = 24/316 (8%)
Query 437 SVIATVKHNLE-ELEQVVYKPQKFFRKVESR--ISDKFKYIIAQLMRDTESLAKRICKDL 493
SVI +L ++E V K RK+++ +S + +R E ++ I
Sbjct 236 SVIVAPTRDLALQIEDEVRKIHSKNRKLKAFECVSLVGGTNFDRSIRYIEKVSPSIVIGT 295
Query 494 ENLSQIQNREFGTQKYEQWIVTV-QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
+FG + ++ V +A + ++ K++ S I K L ++ ++ L
Sbjct 296 PGRLIDVMEKFGNKFFKDVDFKVLDEADRLLEIGFKEDLSYINKMLNTLNTNSTEHIRTL 355
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
+ S K + L + N + + + + EK+ + V ++ L
Sbjct 356 LFSATLDHK--VQSLSNDIMNKEECLYIDTIDENEPQAHEKIDQTLVVGETFADN---LY 410
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
++E P +ILF+ T + ++ KL +
Sbjct 411 AAIEHIREFGTKTPNYKSILFLPTVKFTKFMATILKRQVKLPIYEFH-----------GQ 459
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQTRG 729
+ + I++ FK +L+ T V G+D V+ N I I
Sbjct 460 IDQKKRTRIVNEFKTM-KKGLLVCTDVGARGMDFPNITEVLQIGLPSEIPNYIHRIGRTA 518
Query 730 RGRARGSKCFLLTSNA 745
R GS ++
Sbjct 519 RSGKEGSSVTFISKEE 534
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/125 (25%), Positives = 48/125 (38%), Gaps = 7/125 (6%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQ----QKSVF 310
+ I A TG GKTF LL HL K K K V A + Q + +
Sbjct 198 DSDIIARAKTGTGKTFAFLLPIFQHLLNTKIDSQNKVKSVIVAPTRDLALQIEDEVRKIH 257
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLM 369
SK + + + G T + + I + + I+I TP L++ ++K
Sbjct 258 SKNRKLKAFECVSLVGGTNFDRSIRYIEKVSPSIVIGTPGRLIDVMEKFGNKFFKDVDFK 317
Query 370 IFDEC 374
+ DE
Sbjct 318 VLDEA 322
>sp|B0BT63|RAPA_ACTPJ RNA polymerase-associated protein RapA OS=Actinobacillus
pleuropneumoniae serotype 3 (strain JL03) OX=434271
GN=rapA PE=3 SV=1
Length=969
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 71/474 (15%), Positives = 163/474 (34%), Gaps = 63/474 (13%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP----VYEQQKSVFSKYFERHGYRVT 322
G GKT + +I + L G+ +V+ + + E + K+ R
Sbjct 178 GLGKTIEAGMILQQQL---FSGRVERVLVLVPESLQHQWLVEMLRRFNLKFSLFDEERCA 234
Query 323 GISGATAENVPVEQI-VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--SK 379
A + V + ++ ++I + L ++ + S + ++I DE H+ S+
Sbjct 235 DFDKADEDGNDVSENPFDSEALVIASIDWLESSPNRAKQVLASNWDMLIVDEAHHLEWSE 294
Query 380 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVI 439
P Q + S V+ LTA+ ++ + +L A LDA
Sbjct 295 NEPSVG------YQFVERLSKQTSAVLLLTATPEQLGQES------HFARL-ALLDADRF 341
Query 440 ATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRIC--KDLENLS 497
+ E QK ++ V ++ L D ++ + KD E +
Sbjct 342 YDYNSFVAE--------QKDYKPVADAVATLLND--KPLSNDEQNSIADLLSEKDTEPMF 391
Query 498 QIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEH 557
++ N E +++ ++ V + + + R Y+
Sbjct 392 KVINSE-KSKENDRLQVRQELIRELIDRHGTSRVLFRNTRQGVKGFPHRVYHQIT----- 445
Query 558 ARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFI 617
L+ + + ++ G Q + E+L + + + ++ +P++E L
Sbjct 446 ------LEMPSQYTNALKVMGMMGGVTKDDQLYPERLFQRMNPAAKWADFDPRIEWLITF 499
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L+ + ++ K AL+ + ++ + + M++
Sbjct 500 LKNH----RDEKILVICKQADTAIALEQILREREA---IRSAVF--------HEKMSIVE 544
Query 678 QKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + +LI++S+ EG + + ++L+ N + Q+ GR
Sbjct 545 RDRASAYFAQMEEGAQVLISSSIGSEGRNFQFASNLVLFNLPDNPDLLEQSIGR 598
>sp|Q1E9T9|DBP7_COCIM ATP-dependent RNA helicase DBP7 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP7 PE=3 SV=1
Length=769
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/315 (15%), Positives = 93/315 (30%), Gaps = 47/315 (15%)
Query 513 IVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFS 572
+ + + + + ++E I K L R+ + + LK
Sbjct 321 WLVLDEGDRLMDLGFEEEIQGIIKKLD----ERRRPSKIPDLPAKRTTILCSATLKMNVQ 376
Query 573 NVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENP--------------KLEDLCFIL 618
+ E +E E + S+ P P +L L +L
Sbjct 377 RLGEISLKEAIHIKADPADED-DEQKDGSKQPEFSAPAQLKQSYAVVAAKLRLVTLTALL 435
Query 619 QEEYHLNPE-TITILFVK-------------TRALVDALKNWIEGN-PKLSFLKPGILTG 663
+ + I+FV R + L + + N P S + I T
Sbjct 436 KRTFARKGSVMKAIIFVSCADSVDFHFEVFTRRESSEELPDADDENAPSSSNVHGSIATA 495
Query 664 RGKTNQNTG---------MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVIL 714
+N + + + L AF D ++LI T VA G+D+ + VI
Sbjct 496 SAFSNPSNNVILHKLHGSLPQHVRTATLSAFAKQKDASVLICTDVAARGLDLPNVDFVIE 555
Query 715 YEYVGNVIKMIQTRGR-GR-ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWD 772
Y+ + GR R R + + E+ +++ K S + +
Sbjct 556 YDPAFCSDDHLHRIGRTARLGRDGRALIFLLPGN--EEGYVDILKGSYREGSSNSVTRNE 613
Query 773 EAVFREKILHIQTHE 787
++ +
Sbjct 614 VNEILKRGFGGNSEA 628
Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/128 (20%), Positives = 45/128 (35%), Gaps = 16/128 (13%)
Query 262 ICAPTGCGKTFVSLLICEHHLKKFPQGQKGK---------------VVFFANQIPVYEQQ 306
+ A TG GKT LL L + KGK + A + +Q
Sbjct 199 VQAQTGSGKTLAYLLPIVERLMRISSHNKGKKDSEGNTVHRDSGLFAIVLAPTRELCKQI 258
Query 307 KSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V H + G + ++ + +I++ TP L ++L+ + +S
Sbjct 259 SVVLDGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENTKVLDVSN 318
Query 366 FTLMIFDE 373
++ DE
Sbjct 319 VRWLVLDE 326
>sp|Q6CGD1|DBP4_YARLI ATP-dependent RNA helicase DBP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) OX=284591 GN=DBP4 PE=3
SV=1
Length=740
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYE 304
Q PA++G + + A TG GKT L+ L + + + + +
Sbjct 66 QKRAIPPALQGHDLLGAARTGSGKTLAFLVPVLECLFRNKWSDVDGLGALVISPTRELAV 125
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K H + + G + ++ + +I+I TP L+ ++ + + LS
Sbjct 126 QIFQVLRKIGRCHSFSAGLVIGGKDVAMEADR-LAKLNILICTPGRLLQHMDQTSGFDLS 184
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 185 NVKMLVLDEA 194
Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 19/139 (14%)
Query 610 KLEDLCFILQEEYHLNPETITILF---VKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
+L+D L + + I+F K V ++ L L GK
Sbjct 266 ELQDKLDTLWGFLRTHTKFKIIVFFSSSKQVRYVYETFRTLQPGIPLLHL-------HGK 318
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
Q M ++ F + + L AT + GID + V+ + + I
Sbjct 319 QKQGARM------DVVSKF-SKASSSCLFATDIVARGIDFPAVHWVVQVDCPEDAATYIH 371
Query 727 TRGR-GR-ARGSKCFLLTS 743
GR R + K L +
Sbjct 372 RVGRSARFGKSGKALLFLT 390
>sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidioides
immitis (strain RS) OX=246410 GN=DBP4 PE=3 SV=1
Length=806
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/130 (18%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYE 304
Q A+KG++ + A TG GKT L+ +L + + + +
Sbjct 75 QSRAVPHAIKGRDILGAAKTGSGKTLAFLVPVLENLYRKQWTEYDGLGALILSPTRELAI 134
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q V K H + + G + E+ + +I++ TP ++ ++ + +
Sbjct 135 QIFEVLRKIGRYHTFSAGLVIGGKSLQEEQER-LGRMNILVCTPGRMLQHMDQTAAFDTA 193
Query 365 IFTLMIFDEC 374
+++ DE
Sbjct 194 HIQMLVLDEA 203
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/409 (16%), Positives = 126/409 (31%), Gaps = 57/409 (14%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
GL+AS A+ + K L A+ + + L +V + +RK +
Sbjct 62 GLSASHFKTLTDIQSRAVPHAIKGRDILGAAK----TGSGKTLAFLVPVLENLYRKQWT- 116
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNRE----FGTQKYEQWIVTVQKACMV 522
++ + A ++ T LA +I + L + + G + ++ + + ++
Sbjct 117 ---EYDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSLQEEQERLGRMNIL 173
Query 523 FQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI 582
P + + A F D + +D + + R
Sbjct 174 VCTPGRMLQHMDQTAAFDTAHIQMLVLDEADRIMDMGFQSTVDAIVEHLPKERQTMLFSA 233
Query 583 EQ--------DLTQRFEEKLQELESVSRD----------PSNENPKLEDLCFILQEEYHL 624
Q L+ R E + E+ S + KL+ L ++
Sbjct 234 TQTKKVSDLARLSLRDPEYISVHEAASSATPASLQQHYVVTPLPEKLDTLWSFIRNTLK- 292
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDA 684
+ ++F + K ++PGI Q A+ I
Sbjct 293 ---SKILVF------FSSSKQVRFVYEAFRHMQPGIPLLHLHGRQ----KQSARIDITSK 339
Query 685 FKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR-ARGSKCFLLT 742
F + ++ L +T VA G+D + VI + + I GR R R + L
Sbjct 340 F-SRAKYSCLFSTDVAARGLDFPAVDWVIQLDCPEDADTYIHRVGRTARYERDGRAVLFL 398
Query 743 ----SNAGVIEKEQINMYKEKMMNDS------ILRLQTWDEAVFREKIL 781
+ EQ + E++ + + +LQ K L
Sbjct 399 DPSEEEGMLKRLEQKKIPIERINIKAKKQQSIMNQLQNMCFKDPALKYL 447
>sp|Q9SW44|RH16_ARATH DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis
thaliana OX=3702 GN=RH16 PE=2 SV=1
Length=626
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/224 (16%), Positives = 84/224 (38%), Gaps = 31/224 (14%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV----VFFANQIPVYEQQKSVF 310
++GK+ + A TG GKT LL L K K+ + +Q +
Sbjct 81 LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEV 140
Query 311 SKYFE--RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSL---SI 365
S E R + ++ + + + + +I++ TP + G +
Sbjct 141 SSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSES 200
Query 366 FTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQ---VIGLTASVGVGDAKNTDE 422
++++ DE ++++ + L + +P+ + ++A+ T
Sbjct 201 LSILVLDEA---------DLLLSYGYEDNLRSVTSIIPRRCQCLLMSAT--------TSS 243
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
++ + KL L ++ T+ + ++ E V Q+F+ ++
Sbjct 244 DVEKLKKLI--LHNPIVLTLTEDNDKEEAVPSNVQQFWISCSAQ 285
Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 48/140 (34%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++F+ T + LK ++E +K IL G + ++ IL+ F A
Sbjct 303 KILIFINTIDMGFRLKLFLEKF----GIKSAILNG--------ELPQNSRLHILEQFNA- 349
Query 689 GDHNILIATS------------VAD-----------------------EGIDIAQCNLVI 713
G + LIAT + GID + + VI
Sbjct 350 GLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFKKVHTVI 409
Query 714 LYEYVGNVIKMIQTRGRGRA 733
++ +V I GR
Sbjct 410 NFDMPQSVTGYIHRIGRTGR 429
>sp|A0KGL5|RAPA_AERHH RNA polymerase-associated protein RapA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 /
DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358
/ NCIMB 9240 / NCTC 8049) OX=380703 GN=rapA PE=3 SV=1
Length=955
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 72/476 (15%), Positives = 146/476 (31%), Gaps = 82/476 (17%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I L G+ +V+ + Q F+ +F
Sbjct 179 GLGKTIEAGMIIHQQL---LSGRAHRVLILLP-ETLQHQWLVEMLRRFNLHFSLFDEERC 234
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN------ 376
+ A AEN E ++I + L ++ + + L++ DE H+
Sbjct 235 IEAFADAENP-----FETEQLVICSLDFLRKKRRRFEQVLEAEWDLLVVDEAHHLEWSEE 289
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
+ Y M+ + +P V+ LTA+ ++ + +L LD
Sbjct 290 APSR-AYEMV---------EALAEQVPGVLLLTATPDQLGHQS------HFARL-RLLDP 332
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLEN 495
L E + ++ +SD+ K I+A
Sbjct 333 ERFYDYDAFLAEEQAYGQVASAAQELLDGETLSDEAKRILA------------------- 373
Query 496 LSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIIS 555
SQ++ + Q V K + HL Y L
Sbjct 374 -SQLEGLDLSDAAARQQAV--AKLLDQHGTGRVLFRNSRANIQGFPERHLNVYPMPLPEQ 430
Query 556 EHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLC 615
+K + A + + Q+F E + + +P++E L
Sbjct 431 YKTAIKVMGMMGGNGGDLQTRALRYLYPEKIFQQF-------EGDNATWTQFDPRVEWLL 483
Query 616 FILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTL 675
+L + ++ A AL+ + ++ + + GM++
Sbjct 484 ELLLS----ARQQKVLVICSEAATAIALEEALRTR---EGIRGAVF--------HEGMSI 528
Query 676 PAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G +L+ + + EG + + ++L++ N + Q GR
Sbjct 529 LERDKASAYFAQQEGGAQVLLCSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 584
>sp|Q9HMT9|UVRB_HALSA UvrABC system protein B OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091
GN=uvrB PE=3 SV=1
Length=689
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 26/218 (12%)
Query 549 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN 608
N L +E A D Y+ + A + + + + L ++
Sbjct 387 NRPLTFAEFADKTDRTLYVSATPGDHERAQSANVVEQIV-----RPTHLVDPDISIADAT 441
Query 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
++EDL + E + ++ T+ + + L ++E G
Sbjct 442 GQVEDLMDRIDERVARDE--RVLVTTLTKRMAEDLTEYLEE------------AGVAVEY 487
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEY-----VGNVIK 723
+ + ++ + G++++L+ ++ EG+DI + +LV + + + +
Sbjct 488 MHDETDTLERHELVRGLRL-GEYDVLVGINLLREGLDIPEVSLVAILDADQQGFLRSETS 546
Query 724 MIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
++QT GR R + L + I+ + +
Sbjct 547 LVQTMGRAARNVNGEVVLYADETTDAMQAAIDETQRRR 584
>sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=DBP10 PE=3
SV=1
Length=1154
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (3%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G ++ + + + + F+ G +++LI T VA GID+ V+ +++
Sbjct 492 GYACSHIYSSLDQATRGIQMSRFRR-GQNSLLIVTDVAARGIDLPVLEHVVNFDFPPQPR 550
Query 723 KMIQTRGR-GRA 733
+ GR RA
Sbjct 551 TFVHRVGRTARA 562
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query 258 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQQKSVFSKYFER 316
++ + A TG GKT L+ + L G K + + Q V +
Sbjct 184 RDVVGMARTGSGKTLAYLIPLINRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARG 243
Query 317 HGYRVTGISGATAENVPVEQIV-------------ENNDIIILTPQILVNNLKKGTIPSL 363
+ E + IV N D++I TP +++ L L
Sbjct 244 WKADAGEGQDSRGEAIRWAIIVGGESLDEQFGIMSNNPDVVIATPGRMLH-LTVEMNLDL 302
Query 364 SIFTLMIFDEC 374
++FDE
Sbjct 303 KSVEYVVFDEA 313
>sp|Q3Z9B4|UVRB_DEHM1 UvrABC system protein B OS=Dehalococcoides
mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195) OX=243164
GN=uvrB PE=3 SV=1
Length=668
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 67/428 (16%), Positives = 158/428 (37%), Gaps = 51/428 (12%)
Query 422 EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKF---FRKVESRISDKFKYIIAQ- 477
+ ++ I L + + N+ + V +K + +++ + D+ K + A+
Sbjct 217 DEIERIVSLDPVSGELLADIDEINIYPAKHFVTSAEKMAEAIKGIQAELEDRLKELEAEG 276
Query 478 LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKA 537
M + L +R DLE + Q G + Y + + + + + D E +
Sbjct 277 KMLEAARLKQRTNYDLEMMQQAG-YCSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIV 335
Query 538 LFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAA--GFDEIEQDLTQRF----- 590
+ S + + AR K +DY S + FDE + + Q
Sbjct 336 DESHMS--LPQIRGMYAGDAARKKTLVDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSAT 393
Query 591 ------EEKLQELESVSRDPSNENP---------KLEDLCFILQEEYHLNPETITILFVK 635
E Q +E + R P +++DL +++ ++ + ++
Sbjct 394 PGPYEKEHSQQVVEQLVRPTGLLEPVITVKPTGGQIDDLLEEVKK--RVDKKERVLITTL 451
Query 636 TRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILI 695
T+ + + L +++ +K L ++ + + IL + G +++++
Sbjct 452 TKKMSEKLADYLVEM----GIKTHYL--------HSEVDTLERVEILRDLRL-GVYDVIV 498
Query 696 ATSVADEGIDIAQCNLVILYE-----YVGNVIKMIQTRGR-GRARGSKCFLLTSN-AGVI 748
++ EG+D+ + +LV + + Y+ + +IQT GR R + + G +
Sbjct 499 GINLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAARHVDGQVIMYADKITGSM 558
Query 749 EKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKL 808
++ + + + + + RL R+ I I + + P+ P ++
Sbjct 559 QRAMDEISRRRKIQEDYNRLHNITPQGIRKAIKDINERIRSVTAEVSGPEFRPAPTLRED 618
Query 809 LCRKCKAL 816
+ R K L
Sbjct 619 IVRLIKEL 626
>sp|Q88LF9|UVRB_PSEPK UvrABC system protein B OS=Pseudomonas putida
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
/ KT2440) OX=160488 GN=uvrB PE=3 SV=1
Length=671
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 94/678 (14%), Positives = 205/678 (30%), Gaps = 135/678 (20%)
Query 232 VSDTNLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK 284
+S+ L + F+P Q +E + + + TG GKTF + +++
Sbjct 1 MSEFQLVTRFQPAGDQPEAIRQLVEGIEAGLSHQTLLGV--TGSGKTF----SIANVIQQ 54
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV------------------TGISG 326
+ + A + Q F +F + T I
Sbjct 55 VQRP----TLVLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEK 110
Query 327 ATAENVPVEQ--------IVENNDIIILT----------PQILVNNLKKGTI-PSLSIFT 367
+ N +EQ ++E D II+T P+ + + L
Sbjct 111 DASINDHIEQMRLSATKALLERRDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRA 170
Query 368 LMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYI 427
L+ + + + +V G V D + L+ I
Sbjct 171 LL--------------RRLADLQYTRNEMDFARATFRVRG-----DVIDIFPAESDLEAI 211
Query 428 CKLCASLDASVIATVKHNLEELEQVVYK-----------PQKFFRKVESRISDKFKYIIA 476
+ IA E+ + + + P++ + I ++ K +
Sbjct 212 RIELFDDEVENIAAFDPLTGEVFRKLPRFTFYPKSHYVTPRETLLEAVEGIKEELKERLE 271
Query 477 QLMRDT-----ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDE- 530
L + + L +R DLE + ++ G + Y +++ + D
Sbjct 272 YLHKANKLVEAQRLEQRTRFDLEMILELG-YCNGIENYSRYLSGRPAGAPPPTLYDYLPP 330
Query 531 -------ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEI- 582
ES + + ++ RM ALD F I
Sbjct 331 DALLVIDESHVSVPQVGAMYKGDRSRKETLVEYGFRMPSALDNRPMRFDEWEDVSPQTIF 390
Query 583 --------EQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHL-NPETITILF 633
E + R E++ + P L + +L E +
Sbjct 391 VSATPGPYEAEHAGRVVEQVVRPTGLVDPQVEVRPALTQVDDLLSEIRKRVAAGERVLAT 450
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
T+ + + L +++ + ++ L ++ + + I+ + G ++
Sbjct 451 TLTKRMAEDLSDYLADHD----VRVRYL--------HSDIDTVERVEIIRDLRL-GTFDV 497
Query 694 LIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGV 747
L+ ++ EG+D+ + +LV + + + +IQT GR R + L N
Sbjct 498 LVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADNVTG 557
Query 748 IEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+ I+ + + + + + V + + I + P + +K
Sbjct 558 SMQRAIDETERR--REKQIAFNEANGIVPKGVVKDITD------IMEGATVPGARSKKRK 609
Query 808 LLCRKCKALACYTADVRV 825
+ + + A Y A++R
Sbjct 610 GMAKAAEESARYEAELRT 627
>sp|Q2H2J1|DBP4_CHAGB ATP-dependent RNA helicase DBP4 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC
6347 / NRRL 1970) OX=306901 GN=DBP4 PE=3 SV=1
Length=825
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/123 (18%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYEQQKSVFS 311
A+KG++ + A TG GKT L+ L + + + Q V
Sbjct 87 ALKGRDILGAAKTGSGKTLAFLVPVLEKLYHAKWTEYDGLGALIISPTRELAVQIFEVLR 146
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K R+ + G+ + + +I++ TP ++ +L + ++ +++
Sbjct 147 KI-GRNHFFSAGLVIGGKSLKEEAERLGRMNILVCTPGRMLQHLDQTANFDVNNLQILVL 205
Query 372 DEC 374
DE
Sbjct 206 DEA 208
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/133 (23%), Positives = 47/133 (35%), Gaps = 23/133 (17%)
Query 609 PKLEDLCFILQEEYHLNPETITILFV----KTRALVDALKNWIEGNPKLSFLKPGILTGR 664
KL+ L L+ N ++ I+F + R + ++ K G P L
Sbjct 283 EKLDTLFGFLR----TNLKSKIIVFFSSGKQVRFVFESFKRMQPGIPLLHL--------H 330
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
G+ Q M I F +S + L AT V G+D + V+ + +
Sbjct 331 GRQKQVARM------EITSRF-SSAKYGCLFATDVVARGVDFPAVDWVVQADCPEDADTY 383
Query 725 IQTRGRGRARGSK 737
I GR SK
Sbjct 384 IHRVGRTARYESK 396
>sp|Q4P9E5|SPB4_USTMA ATP-dependent rRNA helicase SPB4 OS=Ustilago
maydis (strain 521 / FGSC 9021) OX=237631 GN=SPB4 PE=3
SV=2
Length=767
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 52/324 (16%), Positives = 110/324 (34%), Gaps = 25/324 (8%)
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+T +N + + + + + + + +S A + L +
Sbjct 162 ASTALNNKRKSSNHLVARKNMISGAQLVVGGSKCTPLDDYRQLRDSGADILVGTPGRLEE 221
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ +++ G +K ++ + +A + + + RI +L ++ + +
Sbjct 222 LLSKK-GVKKSSLEVLVLDEADRLLDLGFTENLRRI-LSLLPKQRRTGLFSATMTDALSE 279
Query 559 RMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFIL 618
++ L V A D ++R LQ L + R + KL L I+
Sbjct 280 LVRIGLRNPVRVVVKVEAKHKTSSSIDDSRRTPATLQNLYQLCRAQN----KLAQLARIV 335
Query 619 QEEYHLNPET----ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
E N + I++ T A V+ + L + + GK T
Sbjct 336 LFESSQNAISGGARKLIVYFSTCAQVNYFYSVFSQVSILRQHRVKLYALHGK------QT 389
Query 675 LPAQKCILDAFKASGDH-------NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQT 727
+K + D F AS ++L T VA G+D+ ++V+ Y+ +
Sbjct 390 PSKRKSMFDTFVASTALDSGASGASVLFCTDVAARGLDLPDVDVVVQYDPPTDPKVFSHR 449
Query 728 RGR-GRA-RGSKCFLLTSNAGVIE 749
GR RA R + ++ +
Sbjct 450 CGRTARAGRNGRAIVMLHTGREQD 473
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein
1 OS=Drosophila melanogaster OX=7227 GN=Chd1 PE=1 SV=1
Length=1883
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 94/563 (17%), Positives = 183/563 (33%), Gaps = 116/563 (21%)
Query 234 DTNLYSPFKPRNYQLE----LALPAMKGKNTIICAPTGCGKT-----FVSLLICEHHLKK 284
L S R+YQ++ L K + I+ G GKT F+ L HHL
Sbjct 519 PEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYG 578
Query 285 FPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQ-IVE---- 339
V +P+ V G ++Q +
Sbjct 579 -----PFLCV-----VPLSTMTAWQREFDLWAPDMNVVTYLGDIKSRELIQQYEWQFESS 628
Query 340 ---NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG 396
+ I+ T +I++ + + + +L L++ DE H + L K
Sbjct 629 KRLKFNCILTTYEIVLKDKQ--FLGTLQWAALLV-DEAHRLKND--------DSLLYKSL 677
Query 397 GSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 456
+++ +T + K L +I + D V+H E +
Sbjct 678 KEFDTNHRLL-ITGTPLQNSLKELWALLHFI--MPDKFDTWENFEVQHGNAEDKGYT--- 731
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTV 516
R+ + + I L R + + K + +E + +++ Q Y +WI+T
Sbjct 732 ---------RLHQQLEPYI--LRRVKKDVEKSLPAKVEQILRVEMTSLQKQYY-KWILTK 779
Query 517 QKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRA 576
+ ++ L + HA + ++ +
Sbjct 780 NFDALRKG------------KRGSTSTFLNIVIELKKCCNHAALIRPSEF------ELMG 821
Query 577 AGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 636
DE Q L + + + L+ L L+E H ++F +
Sbjct 822 LQQDEALQTLLKGSGKLVL---------------LDKLLCRLKETGH-----RVLIFSQM 861
Query 637 RALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN--IL 694
++D L ++++ F + + M ++ LD F A G + L
Sbjct 862 VRMLDVLADYLQKR-HFPFQRL-------DGSIKGEM----RRQALDHFNAEGSQDFCFL 909
Query 695 IATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK-----CFLLTSNAGVIE 749
++T GI++A + VI+++ N +Q + R G K L+T+ +
Sbjct 910 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARS---V 966
Query 750 KEQINMYKEKMMNDSILRLQTWD 772
+EQI ++ M L +Q D
Sbjct 967 EEQIVERAKQKMVLDHLVIQRMD 989
>sp|Q5P0E7|UVRB_AROAE UvrABC system protein B OS=Aromatoleum aromaticum
(strain EbN1) OX=76114 GN=uvrB PE=3 SV=1
Length=685
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/291 (13%), Positives = 99/291 (34%), Gaps = 32/291 (11%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E R+ ++ S A ++
Sbjct 362 GMYKGDRSRKENLVGYGFRLPSALDNRPLKFEEFERLMPQTIFVSATPSTYEAEHQGQVV 421
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ + + L + D +++DL + + ++ T+ + + L
Sbjct 422 EQVVRPTG-----LIDPAIDVRPATTQVDDLLSEAKRRIAVGE--RVLVTTLTKRMAEDL 474
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+++ N ++ L ++ + + I+ + G ++L+ ++ EG
Sbjct 475 TDYLAEN----GIRVRYL--------HSDIDTVERVEIIRDLRL-GKFDVLVGINLLREG 521
Query 704 IDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI + +LV + + + +IQT GR R + L + I+ +
Sbjct 522 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHINGRAILYADVVTRSMRAAIDETE 581
Query 758 EKMM-----NDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDK 803
+ + N + + ++ I + + RD + +P P+
Sbjct 582 RRRVKQIAFNQANGIVPKTVSKRIKDIIDGVYGGD-VERDGRSVAEPPPEY 631
>sp|A9BD93|UVRB_PROM4 UvrABC system protein B OS=Prochlorococcus
marinus (strain MIT 9211) OX=93059 GN=uvrB PE=3 SV=1
Length=679
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/195 (15%), Positives = 72/195 (37%), Gaps = 21/195 (11%)
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
+ ++ T+ + + L +++ N +K L ++ + + I+
Sbjct 443 KKERVLITTLTKRMAEDLSDYLSEN----RVKVRYL--------HSEIHSIERIEIIQDL 490
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRGRGRARGSKCFL 740
+ G++++L+ ++ EG+D+ + +LV++ + +IQT GR L
Sbjct 491 RV-GEYDVLVGVNLLREGLDLPEVSLVVILDADKEGFLRAKRSLIQTIGRAARHVDGFAL 549
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPV 800
L A + + +E +I + + K + + + K
Sbjct 550 L--YADNLTESMSTAIQETERRRAIQQAYNQKHGII-PKPAGKKPSNSILSFLELSRKLQ 606
Query 801 PDKENKKLLCRKCKA 815
+ +N L+ KA
Sbjct 607 NEGDNADLVSITSKA 621
>sp|Q2GV49|SPB4_CHAGB ATP-dependent rRNA helicase SPB4 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) OX=306901 GN=SPB4 PE=3 SV=1
Length=646
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/142 (17%), Positives = 52/142 (37%), Gaps = 13/142 (9%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
+ Q + + S P+ + K+ LC +L+ + +I+F T V
Sbjct 259 IVQERKTPMSLQMSYIVTPA--SQKIPALCQLLERLEPRP--SRSIVFFSTCFAVKYFAR 314
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
+ G G + + + ++ + F + +L+ T +A G+D
Sbjct 315 VLHGILPP---------GFSIVSLHGKLEPQVREKNFERFVNAASPTVLLTTDIAARGLD 365
Query 706 IAQCNLVILYEYVGNVIKMIQT 727
I Q +LV+ ++ + I
Sbjct 366 IPQVDLVVQHDPPTDTKVFIHR 387
Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 26/146 (18%), Positives = 51/146 (35%), Gaps = 28/146 (19%)
Query 257 GKNTIICAPTGCGKTFVSLL-ICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVFSKY 313
K+ ++ A TG GKT L+ + E L+ ++ + + + + Q +V +
Sbjct 52 NKDVVVEAVTGSGKTLAFLIPVVERLLRSEDPAKRHHVQAIIISPTRELASQIYNVLVSF 111
Query 314 FERH---GYRVTGISGATAENVPVEQIV---------------------ENNDIIILTPQ 349
+ H + + G E +V + +I+I TP
Sbjct 112 LKFHAPSAHLLPHAKGDEKRPATTEPVVVPQLLVGGTTKAAEDLSTFLRLSPNILIGTPG 171
Query 350 ILVNNLKKGTI-PSLSIFTLMIFDEC 374
L L + S F +++ DE
Sbjct 172 RLAELLSTPYVKAPSSSFEVLVMDEA 197
>sp|Q5APM7|MS116_CANAL ATP-dependent RNA helicase MSS116, mitochondrial
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
OX=237561 GN=MSS116 PE=3 SV=2
Length=668
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/243 (16%), Positives = 80/243 (33%), Gaps = 19/243 (8%)
Query 545 LRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDP 604
L K + +D FS E +T+ E + + +
Sbjct 263 LYKVRTTPKPIKSLLFSATVDEAISEFSKKHIHPEYEFLNTVTKDDLEIPENIHQQLIEC 322
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLK-----PG 659
++ K+ L + + I+F+ T+ VD +I + P
Sbjct 323 TDGIDKVNVSLSELHGIMKQHNDYKVIVFLPTKTAVDWFYEYITNALDDELFELFSKPPR 382
Query 660 ILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV- 718
+ G G ++ + L FK + ILI+T VA GID+ V+
Sbjct 383 VFMLHG------GRSVRQRSAALKGFKVA-KKGILISTDVAARGIDVKDVTNVMQMFPSV 435
Query 719 --GNVIKMIQTRGRGRARGSKCFLLTSNA----GVIEKEQINMYKEKMMNDSILRLQTWD 772
+ I + GR +G T ++++++ ++E + ++ + D
Sbjct 436 EIADYIHKVGRTGRAGKKGKASLFATPAELPYVSLLKRKRKVKFQEVIQSEKLNSSNIID 495
Query 773 EAV 775
+
Sbjct 496 QIE 498
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 29/139 (21%), Positives = 46/139 (33%), Gaps = 19/139 (14%)
Query 247 QLELALPAMKGKNTIIC-APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ 305
Q + +P + ++C A TG GKT + + K G+ V + Q
Sbjct 114 QQKSLVPIFNTEKGLVCRAKTGTGKTLAFAVPTLQYAYKNR-GKGVSTVVLVPTRDLAFQ 172
Query 306 QKSVFSKYFERHGYR--------VTGISGATAENVPVEQIVENNDIIILTPQILVNNLK- 356
+ + K Y + G + P E I+I TP L L+
Sbjct 173 IEEEYRKLISHLKYNERPNLELIIGGQRTSFNPRRPAE-------IVIATPGRLEKELQT 225
Query 357 -KGTIPSLSIFTLMIFDEC 374
+ S T I+DE
Sbjct 226 DRKLAKCFSNVTYRIYDEA 244
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus
tropicalis OX=8364 GN=ddx1 PE=2 SV=1
Length=740
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 45/138 (33%), Gaps = 11/138 (8%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQ 669
K E ++E I+F +T+ D ++ + K
Sbjct 493 KGEYTVRAIKEHKMD----QAIIFCRTKLDCDNMEQYFIQQGGGPDKKGHQF---SCVCL 545
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG---NVIKMIQ 726
++ +K L+ FK + LI T VA GIDI VI N + I
Sbjct 546 HSDRKPQERKHNLERFKKC-EVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG 604
Query 727 TRGRGRARGSKCFLLTSN 744
GR G L+ +
Sbjct 605 RVGRAERMGLAISLVAAE 622
Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 30/143 (21%), Positives = 51/143 (36%), Gaps = 6/143 (4%)
Query 288 GQKGKVVFFANQIPVYEQ---QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDII 344
K + + EQ F KY + R I G A + + DI+
Sbjct 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIV 343
Query 345 ILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLG-GSSGPLP 403
+ TP + + + G + LS ++ DE + Y+ + Q S G
Sbjct 344 VGTPGRIDDLISTGKLN-LSQVRFLVLDEA-DGLLSQGYSDFINRIHGQIPQVTSDGKRL 401
Query 404 QVIGLTASVGVGDAKNTDEALDY 426
QVI +A++ D K E + +
Sbjct 402 QVIVCSATLHSFDVKKLSEKIMH 424
>sp|Q6D0E6|RAPA_PECAS RNA polymerase-associated protein RapA OS=Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672)
OX=218491 GN=rapA PE=3 SV=1
Length=967
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 63/490 (13%), Positives = 147/490 (30%), Gaps = 57/490 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 157 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRASRVLIVVPE----T 209
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R + ++ E ++I + + + ++
Sbjct 210 LQHQWLVEMLRRFNLLFSLFDDERYAEAKLDSSNPFETEQLVICSLGFVQRSAQRFAQLV 269
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + P V+ LTA+ +
Sbjct 270 NTDWDLLVVDEAHHL----VWSEESPSPEYQAIEALARATPAVLLLTATP---EQLGQQS 322
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ L + + ++ V + Q+ +R V ++ AQ
Sbjct 323 HFARLRLLDPN-----------RFHDYQEFVAE-QQQYRPVADAVTLLLAGEKAQAAELN 370
Query 483 ESLAKRICKDLENLSQIQNREFG-TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLY 541
+D+E L + N + QK Q ++T+ + K
Sbjct 371 VLSDLLGEQDIEPLLKSINSDSDDNQKARQELITMLMDRHGTSRVLFRNTRQGVKGFPQR 430
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
H + L +K + + RA EQ Q +
Sbjct 431 VLH--QIRLPLPAQYQTAIKVSGIMNANKPLETRARDMLYPEQIYQQLEGD--------- 479
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
+ L N + ++ A L+ + ++ +
Sbjct 480 ---DATWWNFDPRVEWLLNYLTTNRDEKVLVICAQAATALQLEQVLRTREA---IRAAVF 533
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVGN 720
+ G+++ + F + + +LI + + EG + + +++++ N
Sbjct 534 --------HEGLSILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLVMFDLPFN 585
Query 721 VIKMIQTRGR 730
+ Q GR
Sbjct 586 PDLLEQRIGR 595
>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47,
mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RH47 PE=1 SV=2
Length=551
Score = 62.1 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query 663 GRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVI 722
G + + + +L FK +G+ +L+ ++ G+D+A+C+LV+ E + +
Sbjct 431 GMNSAEMHGDLGKLGRSTVLKKFK-NGEIKVLVTNELSARGLDVAECDLVVNLELPTDAV 489
Query 723 KMIQTRGRGRA--RGSKCFLLTSNAGV 747
GR R + + V
Sbjct 490 HYAHRAGRTGRLGRKGTVVTVCEESQV 516
Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 26/145 (18%), Positives = 49/145 (34%), Gaps = 14/145 (10%)
Query 243 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG----------- 291
P + Q +KG + +I + TG GKT LL + + +
Sbjct 133 PTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEI 192
Query 292 KVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND--IIILTPQ 349
+ + A + Q K R+ A + E+ ++ N I++ TP
Sbjct 193 QAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPG 252
Query 350 ILVNNLKKGTIPSLSIFTLMIFDEC 374
+ K G + + ++ DE
Sbjct 253 RIAEISKGGKLHT-HGCRFLVLDEV 276
>sp|Q4WV71|DBP7_ASPFU ATP-dependent RNA helicase dbp7 OS=Aspergillus
fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100
/ Af293) OX=330879 GN=dbp7 PE=3 SV=1
Length=758
Score = 62.5 bits (150), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/78 (22%), Positives = 33/78 (42%), Gaps = 2/78 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + L AF + + ++LI T VA G+D+ +LV+ Y+ + + G
Sbjct 498 HGSLPQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIG 557
Query 730 R-GR-ARGSKCFLLTSNA 745
R R R + +
Sbjct 558 RTARVGRDGRALIFLQPG 575
Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (13%)
Query 262 ICAPTGCGKTFVSLLICEHHLKK---------------FPQGQKGKVVFFANQIPVYEQQ 306
I A TG GKT LL + + + A + +Q
Sbjct 182 IQAETGSGKTLAYLLPLVQRIMALSKPGAQTDATGQPIVHRDSGLFAIVLAPTRELCKQI 241
Query 307 KSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V H + G + ++ + +I++ TP L ++L +S
Sbjct 242 SVVLENLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLDNTQALDVSN 301
Query 366 FTLMIFDE 373
++ DE
Sbjct 302 VRWLVLDE 309
>sp|O67708|UVRB_AQUAE UvrABC system protein B OS=Aquifex aeolicus
(strain VF5) OX=224324 GN=uvrB PE=3 SV=1
Length=663
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/402 (13%), Positives = 141/402 (35%), Gaps = 53/402 (13%)
Query 443 KHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMR------------DTESLAKRIC 490
+H ++E+E+ P + + K I L+ + + L +R
Sbjct 235 RHVIKEVEEYSVFPASHYIAPRPTVEQALKEIEKDLIERVKWFKSQGREVEAQRLYQRTM 294
Query 491 KDLENLSQIQ--------NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
D+E + ++ +R F +K + T+ + DE L
Sbjct 295 YDIEMIRELGHCKGIENYSRYFDGRKPGEPPFTLLDYFPEDFLLIIDESHMTIPQLRAMY 354
Query 543 SHLRKYNDALIISEHARMKDALD----YLKDFFSNVR-----AAGFDEIEQDLTQRFEEK 593
+ R + L+ R+ ALD ++F + +A + E + ++ E+
Sbjct 355 NGDRSRKEKLVEYGW-RLPSALDNRPLKFEEFLERINQVIYVSATPGDWELERSEAVVEQ 413
Query 594 LQELESVSRDPSNENPKLEDLCFILQEEYHLNP-ETITILFVKTRALVDALKNWIEGNPK 652
+ + PK+ L +++E + + ++ T+ L + + +++
Sbjct 414 IVRPTGLLDPVVEVRPKMNQLENLVKEIKEVKKRKERALVLTTTKRLAEEIADYLTE--- 470
Query 653 LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 712
++ + ++ + + ++ + G ++++ ++ EG+D+ + +LV
Sbjct 471 -RKIRAKYM--------HSELDAIERAQLIRELR-EGSIDVIVGVNLLREGLDLPEVSLV 520
Query 713 ILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSI 765
+ + + +IQT GR R K L +EK + + + +
Sbjct 521 AIMDADKEGFLRSYQALIQTIGRAARNIHGKAILYADRITKAMEKAIQETQRRRKIQEEF 580
Query 766 LRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKK 807
+ ++ + + E+ D P+ +P +
Sbjct 581 NKKHGITPKSIKKPVKELLAIEEL--DYVSVPEELPKGVKSE 620
Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 47/254 (19%), Positives = 85/254 (33%), Gaps = 31/254 (12%)
Query 368 LMIFDECHNTSKQHPYNMIMF---NYLDQKLGGSSGPLP------------------QVI 406
L+I DE H T P M+ +KL LP QVI
Sbjct 337 LLIIDESHMTI---PQLRAMYNGDRSRKEKLVEYGWRLPSALDNRPLKFEEFLERINQVI 393
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEE--LEQVVYKPQKFFRKVE 464
++A+ G + + ++ ++ I + LD V K N E ++++ ++ R +
Sbjct 394 YVSATPGDWELERSEAVVEQIVRPTGLLDPVVEVRPKMNQLENLVKEIKEVKKRKERALV 453
Query 465 SRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQ 524
+ + IA + + + AK + +L+ + + Q + IV V
Sbjct 454 LTTTKRLAEEIADYLTERKIRAKYMHSELDAIERAQLIRELREGSIDVIVGVNLLREGLD 513
Query 525 MPDKDEESRICKALFLYTSHLRKYND-ALIISEHARMKDALDYL-KDFFSNVRAAGFDEI 582
+P E S + LR Y I AR L D + E
Sbjct 514 LP---EVSLVAIMDADKEGFLRSYQALIQTIGRAARNIHGKAILYADRITKAMEKAIQET 570
Query 583 EQDLTQRFEEKLQE 596
++ + E +
Sbjct 571 QRRRKIQEEFNKKH 584
>sp|B7UM74|RECG_ECO27 ATP-dependent DNA helicase RecG OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) OX=574521 GN=recG
PE=3 SV=1
Length=693
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/354 (17%), Positives = 118/354 (33%), Gaps = 87/354 (25%)
Query 100 LEEYRLLLKRLQPEFKTRIIP-------------TDIISDLSECLINQECEEILQICSTK 146
EYR+ PE + + P + + L EE+L ++
Sbjct 130 HPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ 189
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMET 206
GMM + + L R P TL+L+ + ++ ++ ++++ +L
Sbjct 190 GMMT-LPEALRTLHRP-----PPTLQLSDLETGQHPAQRRLI---LEELLAHNLSMLALR 240
Query 207 SDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKP------------RNYQLELALPA 254
+ Q F Q LS N +++ PFKP R+ L++ +
Sbjct 241 AGAQRF-----HAQPLSANDALKNKLLA---ALPFKPTGAQARVVAEIERDMALDVPMMR 292
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYF 314
++ G GKT + +V A + EQ + F +F
Sbjct 293 ------LVQGDVGSGKT-----LVAALAALRAVAHGKQVALMAPTELLAEQHANNFRNWF 341
Query 315 ERHGYRVTGISGATAENVP--VEQIVENNDI--IILTPQILVNNLKKGTIPSLSIFTLMI 370
G V ++G ++ + + + I+ T I ++ + L+I
Sbjct 342 APLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQ------FNGLALVI 395
Query 371 FDECHN--------------TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
DE H HP+ +IM ++ P+P+ + +TA
Sbjct 396 IDEQHRFGVHQRLALWEKGQQQGFHPHQLIM----------TATPIPRTLAMTA 439
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 3/108 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ M ++ ++ +FK G+ ++L+AT+V + G+D+ +L+I+ + ++ Q R
Sbjct 524 HGRMKPAEKQAVMTSFK-QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR GR + +L + + QI + + ND + Q E
Sbjct 583 GRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIR 630
>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxococcus
xanthus OX=34 GN=mfd PE=3 SV=1
Length=1201
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 71/209 (34%), Gaps = 41/209 (20%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
++C G GKT V++ + +V + +Q F K F +
Sbjct 680 LVCGDVGYGKTEVAMRAA-----FKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVT 734
Query 321 VTGISGATAENVPVEQIVE-----NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECH 375
V ISG + V +I++ DI+I T ++L G + LMI DE
Sbjct 735 VEVISGL-KKAPEVREILKRAKEGKVDILIGTHKLL------GGEVAFKELGLMIVDEE- 786
Query 376 NTSKQHPYNMIMFNYLDQKLGGSSGPLPQV--IGLTASVGVGDAKNTDEALDYICKLCAS 433
+ ++ Q+ + LTA+ + ++ +
Sbjct 787 ------------QRFGVKQKESLKKWRSQIDVLTLTATPI---PRTLHMSMSGVR----- 826
Query 434 LDASVIATVKHNLEELEQVVYKPQKFFRK 462
D S+IAT + + V K + K
Sbjct 827 -DMSIIATPPQDRRAIRTFVMKYEDTVVK 854
Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/132 (19%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
FV R +++ +L L P + G G + +
Sbjct 869 FVHNR-----VESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEK-----KYQ 918
Query 693 ILIATSVADEGIDIAQCN-LVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEK 750
+L+ TS+ + GIDI+ N +++ + ++ Q RGR GR++ L +
Sbjct 919 VLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVT 978
Query 751 EQINMYKEKMMN 762
+ E + N
Sbjct 979 KDAQRRLEVLQN 990
>sp|Q2JN87|UVRB_SYNJB UvrABC system protein B OS=Synechococcus
sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=uvrB PE=3 SV=1
Length=695
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/180 (16%), Positives = 65/180 (36%), Gaps = 20/180 (11%)
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
++ E L P I+ T+ + + L +++ ++ L ++ +T
Sbjct 458 IYLRLERSQLGPAERVIVTTLTKRMAEDLTEYLQE----RGIRVRYL--------HSEIT 505
Query 675 LPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTRG 729
+ IL F+ G ++L+ ++ EG+D+ + +LV + + +IQ G
Sbjct 506 SIERIEILQDFR-EGAFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRAERSLIQMIG 564
Query 730 RGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKF 789
R AR + ++ A + E I + + I+ ++
Sbjct 565 RA-ARNVR-GMVVMYADTMTSSMARAIAETQRRREIQLQYNRQHNITPKPIVKKNSNAIL 622
>sp|Q8NHQ9|DDX55_HUMAN ATP-dependent RNA helicase DDX55 OS=Homo
sapiens OX=9606 GN=DDX55 PE=1 SV=3
Length=600
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 47/140 (34%), Gaps = 19/140 (14%)
Query 606 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRG 665
+ K L L+ + ++F T A V+ +E K +
Sbjct 250 KADEKFNQLVHFLRNH----KQEKHLVFFSTCACVEYYGKALEVLVKGVKIMC------- 298
Query 666 KTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 725
+ M K ++ F+ IL+ T V GIDI + N V+ Y+ N +
Sbjct 299 ---IHGKMKYKRNKIFME-FRKL-QSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFV 353
Query 726 QTRGR-GR--ARGSKCFLLT 742
GR R GS L
Sbjct 354 HRCGRTARIGHGGSALVFLL 373
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 14/133 (11%)
Query 255 MKGKNTIICAP--TGCGKTFVSLLICEHHLKKFPQG-QKGKV--VFFANQIPVYEQQKSV 309
+ +N + A TG GKT ++ L + + +K +V + + Q V
Sbjct 42 LFMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKSQVGAIIITPTRELAIQIDEV 101
Query 310 FSKYFERHGYRVTGISGATAENVPVEQIVENND---IIILTPQILVNNLKK-----GTIP 361
S +F +H + I N + II+ TP L + ++
Sbjct 102 LS-HFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVATPGRLEDMFRRKAEGLDLAS 160
Query 362 SLSIFTLMIFDEC 374
+ +++ DE
Sbjct 161 CVRSLDVLVLDEA 173
>sp|Q8DCG1|RAPA_VIBVU RNA polymerase-associated protein RapA OS=Vibrio
vulnificus (strain CMCP6) OX=216895 GN=rapA PE=3 SV=1
Length=969
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 62/477 (13%), Positives = 149/477 (31%), Gaps = 71/477 (15%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + +I G+ +++ + R +
Sbjct 180 GLGKTIEAGMIIHQQ---VLLGRAERILIVVP---------ETLQHQWLVEMMRRFNLHF 227
Query 327 ATAENVPVEQIVENNDIIILTPQILV---NNLKKGTIPSLSIF----TLMIFDECHNT-- 377
+ + + +D T Q ++ + L+K L++ DE H+
Sbjct 228 SIFDEERCVEAFAESDNPFDTQQYVLCSLDFLRKSRKRFEQALEAEWDLLVVDEAHHLEW 287
Query 378 SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDAS 437
S+ P Q + G + P V+ LTA+ ++ + +L LD+
Sbjct 288 SQDKPSRG------YQVVEGLAERTPGVLLLTATPEQLGRES------HFARL-RLLDSD 334
Query 438 VIATVKHNLEELEQVVYKPQKFFRKVE-SRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
+EE Q +++D+ K I +L+ +E + + + +E+
Sbjct 335 RFYDYAAFVEEEAQYAPVADAITALFSGVKLADEAKNQITELL--SEQDVEPLFRIIESN 392
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
+ +++ Q+ ++ V + R +
Sbjct 393 ADEESKAIARQELIDNLMDRHGTGRVL------------------FRNTRAAIKGFPVRN 434
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN--PKLEDL 614
+ + + +++R +G + R + L E E+ + +
Sbjct 435 VHLLP--MPIPTQYTTSMRVSGMIGGKLAPEARAMKNLYPEEIFQEFEGEESSWWQFDCR 492
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L E+ ++ + L+ + ++ + + GM+
Sbjct 493 VNWLLEKLKAQRSEKVLVIASRASTALQLEQALRER---EGIRATVF--------HEGMS 541
Query 675 LPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ + F + G +LI + + EG + N +++++ N + Q GR
Sbjct 542 ILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGR 598
>sp|Q9FFT9|RH32_ARATH DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis
thaliana OX=3702 GN=RH32 PE=2 SV=1
Length=739
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 15/150 (10%)
Query 611 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQN 670
+E +L + + ++F+ T+ V + + + L+PGI + +
Sbjct 300 VEKKLDMLWSFIKTHLNSRILVFLSTKKQVKFV------HEAFNKLRPGI----PLKSLH 349
Query 671 TGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI-AQCNLVILYEYVGNVIKMIQTRG 729
M+ + + F ++L T V G+D + V+ + +V I G
Sbjct 350 GKMSQEKRMGVYSQFIE--RQSVLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVG 407
Query 730 R-GR-ARGSKCFLLTSNAGVIEKEQINMYK 757
R R K L + + E++ K
Sbjct 408 RTARFYTQGKSLLFLTPSEEKMIEKLQEAK 437
Score = 60.2 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/123 (18%), Positives = 48/123 (39%), Gaps = 2/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFS 311
A+ G++ + A TG GKT ++ L + + V + + + Q V +
Sbjct 105 ALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLN 164
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + H + + G ++ V +I++ P L+ ++ + ++I
Sbjct 165 KVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMDETPNFECPQLQILIL 224
Query 372 DEC 374
DE
Sbjct 225 DEA 227
>sp|Q4UKL6|UVRB_RICFE UvrABC system protein B OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=uvrB PE=3
SV=1
Length=661
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/398 (15%), Positives = 125/398 (31%), Gaps = 56/398 (14%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN---- 501
PQ+ S I ++ + + L +T+ L +R DLE L++ +
Sbjct 246 SHFVMPQETVNSAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCKGV 305
Query 502 ---REFGTQK-------------YEQWIVTVQKACMVF----QMPDKDEESRICKALFLY 541
F T + E ++ V ++ + M + D + +
Sbjct 306 ENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKEVLVEHGF 365
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
N L E + + ++ + +L R L
Sbjct 366 RLPSALDNRPLKFEEWEKFRPQTVFVSATPGPFELEETGDTVVELIIRPTGLLD--PECI 423
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P+ ++EDL +Q + ++ T+ + + L +++ K L
Sbjct 424 IKPATN--QVEDLIGEIQA--TIAKGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL 475
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-- 719
++ + + IL + G +IL+ ++ EG+DI +C LV + +
Sbjct 476 --------HSNIHTLERIEILRDLR-QGTIDILVGINLLREGLDIPECGLVAILDADKEG 526
Query 720 ---NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +IQT GR R + L I+K + + +
Sbjct 527 FLRSEVSLIQTIGRAARNSEGRVILYADKMTKSIDKAMSETSRRRQIQQEYNEKHGIIPK 586
Query 775 VFREKILHIQTHEKFI-RDSQEKPKPVPDKENKKLLCR 811
I + EK + +++ + D K
Sbjct 587 TINRAIHALAELEKVDSKLDKKQAHTLFDNPAKLKAHI 624
>sp|Q9CK01|RAPA_PASMU RNA polymerase-associated protein RapA OS=Pasteurella
multocida (strain Pm70) OX=272843 GN=rapA PE=3
SV=1
Length=967
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 79/591 (13%), Positives = 177/591 (30%), Gaps = 85/591 (14%)
Query 165 ENWPKTLKLALEKERNKFSELWIVEKGIK-DVETEDLEDKMETSDIQ--IFYQEDPECQN 221
E W + LE F L + G + ++ D+ +M S Q +F + ++
Sbjct 65 EGWKGNVLDILENNGVAFYLLKRQDNGEEITIQERDIAHQMTFSKPQDRLFTTQIDRNEH 124
Query 222 LSENSCPPSEVSDTNLYSPFKPR-------NYQLELALP--AMKGKNTIICAPTGCGKTF 272
+ + R +QL +A ++ G GKT
Sbjct 125 FTLRYQALTHQQAQFQSPLRGLRGIRAGLIPHQLHIAREVGQRTAPRVLLADEVGLGKTI 184
Query 273 VSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVTGISGAT 328
+ +I + L + +V+ + Q F+ +F
Sbjct 185 EAGMILQQQL---FAEKVERVLIIVP-ETLQHQWLVEMLRRFNLHFALFDEERCADFEDP 240
Query 329 AENVPVEQIVENNDIIIL------TPQILVNNLKKGTIPSLSIFTLMIFDECHNTS-KQH 381
A + + + II P+ + L+ G ++I DE H+ +H
Sbjct 241 ASALWINPFNTESQIICALDWLCEKPKRVEQLLEAGF-------DMLIVDEAHHLGWSEH 293
Query 382 PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIAT 441
Y Q + + +P V+ LTA+ ++ + +L + LD
Sbjct 294 ---NPSLEY--QLVEQLARQIPAVLLLTATPEQLGQES------HFARL-SLLDPDRFYD 341
Query 442 VKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQN 501
+ ++E Q+ ++ V + + L+ + +L Q+
Sbjct 342 YQAFVQE--------QQQYQPVAEAVQSLLAD---------KPLSAVEKNHISDLLSEQD 384
Query 502 REFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMK 561
E + + QKA ++ D + R + H
Sbjct 385 VEPLLKVLDSQAHDEQKALARQELID-----NLIDRHGTSRVLFRNTRQGVKGFPHRTYN 439
Query 562 DALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEE 621
L ++N E+ F E +P + + L
Sbjct 440 QITLELPKQYNNAANVLAMLGEKGDNDSF---YPEQMFQKLNPDARWWEFDPRLEWLITF 496
Query 622 YHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCI 681
+ E ++ + L+ + + ++ + + +++ +
Sbjct 497 LKNHREEKVLVICRHANTAIQLEQALR---EKEAIRAAVF--------HEKLSIVERDRA 545
Query 682 LDAF--KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
F + G +L+++S+ EG + + ++L+ + + Q GR
Sbjct 546 AAYFAQQEDGAQ-LLLSSSIGSEGRNFQFASHLVLFNLPDDPDLLEQCIGR 595
>sp|A1DE84|DBP7_NEOFI ATP-dependent RNA helicase dbp7 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 /
FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=dbp7
PE=3 SV=1
Length=758
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/78 (22%), Positives = 33/78 (42%), Gaps = 2/78 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 729
+ + + L AF + + ++LI T VA G+D+ +LV+ Y+ + + G
Sbjct 498 HGSLPQNVRTSTLGAFAKNKEASVLICTDVASRGLDLPNVDLVVEYDPAFSAEDHLHRIG 557
Query 730 R-GR-ARGSKCFLLTSNA 745
R R R + +
Sbjct 558 RTARVGRDGRALIFLQPG 575
Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 16/128 (13%)
Query 262 ICAPTGCGKTFVSLLICEHHLKK---------------FPQGQKGKVVFFANQIPVYEQQ 306
I A TG GKT LL + + + A + +Q
Sbjct 182 IQAETGSGKTLAYLLPLVQRIMALSKPGAQTDAKGQPIVHRDSGLFAIVLAPTRELCKQI 241
Query 307 KSVFSKYFE-RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 365
V H + G + ++ + +I++ TP L ++L +S
Sbjct 242 SVVLENLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLDNTQALDVSN 301
Query 366 FTLMIFDE 373
++ DE
Sbjct 302 VRWLVLDE 309
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) OX=559292
GN=CHD1 PE=1 SV=1
Length=1468
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 92/624 (15%), Positives = 212/624 (34%), Gaps = 115/624 (18%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLY-----------SPF 241
+ + ++ + T +++ ++ QN ENS + S PF
Sbjct 312 RRLNYDEATWENATDIVKLAPEQVKHFQNR-ENSKILPQYSSNYTSQRPRFEKLSVQPPF 370
Query 242 ----KPRNYQLE----LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV 293
+ R++QL +A KG N I+ G GKT ++ + Q +
Sbjct 371 IKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHII 430
Query 294 VFFANQIPVYEQQK--SVFSKYFERHGYRVTGISGATAENVPVEQIVENND--------- 342
V +P+ F K+ + + + + + N
Sbjct 431 V-----VPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKF 485
Query 343 -IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGP 401
+++ T + ++ + + + S+ + M DE H + +
Sbjct 486 NVLLTTYEYILKD--RAELGSIK-WQFMAVDEAHRLK------NAESSLYESLNSFKVAN 536
Query 402 LPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFR 461
+ T + + K ++++ ++D + ++ EE E+ ++ + +
Sbjct 537 RMLI---TGTPLQNNIKELAALVNFLMPGRFTIDQEID--FENQDEEQEEYIHDLHRRIQ 591
Query 462 KVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACM 521
I+ +L +D E K + E + +++ + T +Y + I+T + +
Sbjct 592 PF----------ILRRLKKDVE---KSLPSKTERILRVELSDVQT-EYYKNILTKNYSAL 637
Query 522 VFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDE 581
H + + ++ LK ++ FD
Sbjct 638 TAGAKGG----------------------------HFSLLNIMNELKKASNH--PYLFDN 667
Query 582 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
E+ + Q+F + E+V R + K+ L +L ++F + ++D
Sbjct 668 AEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGH--RVLIFSQMVRMLD 725
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA--SGDHNILIATSV 699
L +++ + + L G + Q ++ +D F + S D L++T
Sbjct 726 ILGDYLS----IKGINFQRLDGTVPSAQ--------RRISIDHFNSPDSNDFVFLLSTRA 773
Query 700 ADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK----CFLLTSNAGVIEKEQINM 755
GI++ + V++++ N +Q R G K + L S V E+
Sbjct 774 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 833
Query 756 YKEKMMNDSILRLQTWDEAVFREK 779
K+ ++ +I+ L D + +K
Sbjct 834 RKKMILEYAIISLGVTDGNKYTKK 857
>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia
coli (strain K12) OX=83333 GN=recG PE=1 SV=1
Length=693
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/344 (17%), Positives = 112/344 (33%), Gaps = 67/344 (19%)
Query 100 LEEYRLLLKRLQPEFKTRIIP-------------TDIISDLSECLINQECEEILQICSTK 146
EYR+ PE + + P + + L EE+L ++
Sbjct 130 HPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ 189
Query 147 GMMAGAEKLVECLLRSDKENWPKTLKLA-LEKERNKFSELWIVEKGI-KDVETEDLEDKM 204
GMM + + L R P TL+L+ LE ++ I+E+ + ++ L
Sbjct 190 GMMT-LPEALRTLHRP-----PPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGA 243
Query 205 ETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICA 264
+ Q + +N + P R+ L++ + ++
Sbjct 244 QRFHAQ-PLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMR------LVQG 296
Query 265 PTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGI 324
G GKT + +V A + EQ + F +F G V +
Sbjct 297 DVGSGKT-----LVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWL 351
Query 325 SGATAENVP--VEQIVENNDI--IILTPQILVNNLKKGTIPSLSIFTLMIFDECHN---- 376
+G ++ + + + I+ T I ++ + L+I DE H
Sbjct 352 AGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQ------FNGLALVIIDEQHRFGVH 405
Query 377 ----------TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTA 410
HP+ +IM ++ P+P+ + +TA
Sbjct 406 QRLALWEKGQQQGFHPHQLIM----------TATPIPRTLAMTA 439
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 3/108 (3%)
Query 670 NTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-NVIKMIQTR 728
+ M ++ ++ +FK G+ ++L+AT+V + G+D+ +L+I+ + ++ Q R
Sbjct 524 HGRMKPAEKQAVMASFK-QGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLR 582
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR GR + +L + + QI + + ND + Q E
Sbjct 583 GRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIR 630
>sp|Q8SR49|SPB4_ENCCU ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon
cuniculi (strain GB-M1) OX=284813 GN=SPB4 PE=3 SV=1
Length=463
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/111 (21%), Positives = 40/111 (36%), Gaps = 17/111 (15%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGK-TNQNTGMTLPAQKCILDAF-K 686
I+F T + VD + G G + ++ + + + F +
Sbjct 238 RCIVFFATCSEVDFFSGLVSR------------AGFGNICKIHGKISQDERNRVYEEFFQ 285
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK 737
G +L T VA GID +LV+ ++ ++ GR GSK
Sbjct 286 RDG---LLFCTDVAARGIDFRGVDLVVHFDVPKEYSSIVHRSGRTARNGSK 333
Score = 57.1 bits (136), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/130 (21%), Positives = 49/130 (38%), Gaps = 7/130 (5%)
Query 247 QLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHL-KKFPQGQKGKV-VFFANQIPVYE 304
QL+ +KGK+ ++ +PTG GKT L + +G+ G V +
Sbjct 31 QLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELAL 90
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLS 364
Q + + G + +++ E I + TP L+ + K T S
Sbjct 91 Q----IREVAGLFDVKCECFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKET-KKFS 145
Query 365 IFTLMIFDEC 374
+ ++ DE
Sbjct 146 SLSHLVLDEA 155
>sp|A5DEZ5|MS116_PICGU ATP-dependent RNA helicase MSS116, mitochondrial
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS
566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746
GN=MSS116 PE=3 SV=2
Length=714
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 50/144 (35%), Gaps = 6/144 (4%)
Query 625 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILT---GRGKTNQNTGMTLPAQKCI 681
+ I+F+ T + ++ + T G + M+ A+
Sbjct 338 DKYFKAIVFLPTITGTEYYYRVLQRAKREELYDSETATKKYGSRILRLHGKMSQSARDRT 397
Query 682 LDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARG-SKCF 739
+ F+ + H +L+ T VA G+D + VI +V I GR RA K
Sbjct 398 VKEFRRT-SHGVLVCTDVAARGLDFNDVSHVIQMCPSSSVADYIHKIGRTARAGARGKAR 456
Query 740 LLTSNAGVIEKEQINMYKEKMMND 763
+ S + E + + + +
Sbjct 457 IFISEPEMKFIETLQRERGIVFKE 480
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 83/242 (34%), Gaps = 16/242 (7%)
Query 247 QLELALPAMKGKNTIIC-APTGCGKTFV-SLLICEHHLKKFPQGQKGKV--VFFANQIPV 302
Q +P M K ++ A TG GKT +L + L+ Q QKG++ + A +
Sbjct 101 QQRAIMPMMDTKTGVVVRAKTGTGKTLAFALPCIQAALENPQQTQKGRIQALVVAPTRDL 160
Query 303 YEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIV---ENNDIIILTPQILVNNLKKGT 359
Q ++ F K + V + + + I+I TP L L+
Sbjct 161 ALQIEAEFKKVLQHQTRNVHRKTDTFVLIGGRKNDLHPKAKAAIVIATPGRLEAILRDPR 220
Query 360 IPSL-SIFTLMIFDECHNT--SKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 416
+ + S ++DE P ++ L + P TA
Sbjct 221 MLPMFSDLKYRVYDEADRLLDQGFAPTLEVIEERLRDAKAEALEPDNHFK--TA----LF 274
Query 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 476
+ D+A+ + I V + EE + +++ + ++ F YI+
Sbjct 275 SATVDDAVTNFAHETIGKEYEYINCVDKDAEESHENIHQGIVRTQSIKDSFEASFSYILN 334
Query 477 QL 478
+
Sbjct 335 HI 336
>sp|Q65ST2|UVRB_MANSM UvrABC system protein B OS=Mannheimia succiniciproducens
(strain MBEL55E) OX=221988 GN=uvrB PE=3 SV=1
Length=678
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/386 (15%), Positives = 130/386 (34%), Gaps = 49/386 (13%)
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELE 450
D G G +P+ T ++ LD I K+ + L +K N E
Sbjct 232 FDPLTGTGFGAVPR---FTVYPKTHYVTPREQILDAIEKIKSELADRREYFIKENKLLEE 288
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYE 510
Q + + +F + + ++ Y E+ ++ + E
Sbjct 289 QRITQRTQF----DIEMMNELGYC-----SGIENYSRYLSGRNEGEPP---PTLFDYMPS 336
Query 511 QWIVTVQKACMVF----QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY 566
++ + ++ + M D + + + N L E R+ Y
Sbjct 337 DALLVIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIY 396
Query 567 LKDF-FSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLN 625
+ EI + + E+E + +++DL ++ N
Sbjct 397 VSATPGPYELEKSGTEIIDQVVRPTGLLDPEIEIRPV-----SIQVDDLLSEARQRADRN 451
Query 626 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 685
++ T+ + + L ++++ + ++ L ++ + + I+
Sbjct 452 E--RVLVTTLTKRMAEDLTDYLDEH----GIRVRYL--------HSDIDTVERVEIIRDL 497
Query 686 KASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCF 739
+ G+ ++L+ ++ EG+DI + +LV + + + +IQT GR R K
Sbjct 498 RL-GEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLKGKAI 556
Query 740 LL---TSNAGVIEKEQINMYKEKMMN 762
L +N+ + N +EK M
Sbjct 557 LYADRITNSMEKAITETNRRREKQMK 582
>sp|Q8ENJ5|UVRB_OCEIH UvrABC system protein B OS=Oceanobacillus
iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC
3954 / HTE831) OX=221109 GN=uvrB PE=3 SV=1
Length=660
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 79/231 (34%), Gaps = 32/231 (14%)
Query 591 EEKLQELESVSRDPSNENPKLE---------DLCFILQEEYHLNPETITILFVKTRALVD 641
E + E + R +PK+E +L ++ N ++ T+ + +
Sbjct 402 EHSPEMTEQIIRPTGLLDPKVEVRPIEGQIDNLIEEIRIRMEKNE--RVLITTLTKKMSE 459
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L ++++ G ++ + + ++ + G ++L+ ++
Sbjct 460 DLTDYLKE------------IGMKVAYLHSEIKTLERIEVIRDLRV-GKFDVLVGINLLR 506
Query 702 EGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINM 755
EG+DI + +LV + + + +IQT GR R K + K+ I+
Sbjct 507 EGLDIPEVSLVSILDADKEGFLRSERSLIQTMGRAARNENGKVIMYADKMTDSMKKAIDE 566
Query 756 YKEKMMNDSILRLQT--WDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKE 804
+ + Q + + +E I+ +PK +
Sbjct 567 TNRRRTIQTEYNEQHGITPKTIRKEVRDVIKATTAAEETESYEPKTKQINK 617
>sp|Q3ITS0|UVRB_NATPD UvrABC system protein B OS=Natronomonas
pharaonis (strain ATCC 35678 / DSM 2160 / CIP 103997 / JCM 8858
/ NBRC 14720 / NCIMB 2260 / Gabara) OX=348780 GN=uvrB PE=3
SV=1
Length=683
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 71/199 (36%), Gaps = 24/199 (12%)
Query 576 AAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE-TITILFV 634
+A + E+D +++ E++ + DP E E L E PE ++
Sbjct 405 SATPGDYERDHSEQVVEQIVR-PTYLVDPDIEVEPAEKQVEDLIERIQATPEDERVLVTT 463
Query 635 KTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNIL 694
T+ + + L ++E G + + ++ + + G+ +L
Sbjct 464 LTKRMAEDLTEYLEN------------AGVDVAYMHDETDTLERHELVRSLRL-GEIQVL 510
Query 695 IATSVADEGIDIAQCNLVILYEY-----VGNVIKMIQTRGR-GRARGSKCFLLTSNAGVI 748
+ ++ EG+DI + +LV + + + + ++QT GR R L A
Sbjct 511 VGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAARNVEGSVVL---YADET 567
Query 749 EKEQINMYKEKMMNDSILR 767
+E I R
Sbjct 568 TDSMAAAIEETRRRREIQR 586
>sp|A1STV6|UVRB_PSYIN UvrABC system protein B OS=Psychromonas
ingrahamii (strain DSM 17664 / CCUG 51855 / 37) OX=357804 GN=uvrB
PE=3 SV=1
Length=670
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/148 (16%), Positives = 60/148 (41%), Gaps = 19/148 (13%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++ T+ + + L +++ + +K L ++ + + I+ +
Sbjct 448 RVLVTTLTKRMAEDLTDYLHEH----GIKARYL--------HSDVNTVERVEIIRDLRL- 494
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLT 742
G ++LI ++ EG+DI + +LV + + + +IQT GR R K L
Sbjct 495 GIFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNLNGKAILYA 554
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQT 770
+ ++ I + +++ + ++
Sbjct 555 ARITGSMQKAIKVTEDRRELQNKFNIEN 582
>sp|Q6CK32|DBP7_KLULA ATP-dependent RNA helicase DBP7 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) OX=284590 GN=DBP7 PE=3 SV=1
Length=740
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 54/171 (32%), Gaps = 22/171 (13%)
Query 670 NTGMTLPAQKCILDAFKA-----SGDHNILIATSVADEGIDIAQCNLVILYEYV---GNV 721
+ ++ + L F G H IL T VA G+D+ + VI + +
Sbjct 490 HGSLSQQTRTATLKHFATNNDATKGKHLILFCTDVASRGLDLPHVSTVIEMDPPFAVEDH 549
Query 722 IKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKIL 781
+ I R G L + I Y K +L T+DE V R
Sbjct 550 LHRIGRTARAGCEGESLLFLLPGEEEGYMDYIKPYHPK-----GWKLLTYDEQVLRPAFE 604
Query 782 HIQTHEK-FIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIEECHY 831
+ ++ +K + N + RVIE+ H+
Sbjct 605 GLNVRRTDKKKEDWDKHEAQAWDNNATTWHLNVER--------RVIEDSHF 647
Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 53/141 (38%), Gaps = 9/141 (6%)
Query 242 KPRNYQLELALPAMKGKNTI-ICAPTGCGKTFVSLLICEHHL----KKFPQGQKGKVVFF 296
KP Q + P ++ +N + I A TG GKT LL + + + +
Sbjct 172 KPTKIQKLVIPPFLQAQNDLFIHAQTGSGKTLAFLLPIFQSILSLGQNITRQSGCFALVV 231
Query 297 ANQIPVYEQQKSVFSKYFERHGYRV-TGISGATAENVPVEQIVENNDIIILTPQILVNNL 355
+ Q V S+ + + V + G + ++ + + II TP ++++L
Sbjct 232 TPTRELANQIYQVTSELAQCCHFLVPCLLIGGERKKSEKARLRKGANFIIGTPGRVLDHL 291
Query 356 KKGTIPSLS---IFTLMIFDE 373
+ + ++ DE
Sbjct 292 QNTKVIKEQLAPSLRYVVLDE 312
>sp|A3GGE9|DBP4_PICST ATP-dependent RNA helicase DBP4 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063
/ NRRL Y-11545) OX=322104 GN=DBP4 PE=3 SV=2
Length=765
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/294 (15%), Positives = 92/294 (31%), Gaps = 38/294 (13%)
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 548
+ +SQ N G + ++ + +A M K + I L L
Sbjct 172 LVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNIVGHLPPTRQTLLFS 231
Query 549 NDALI-ISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNE 607
+ + AR+ S+ + E R
Sbjct 232 ATVSDSVKDLARLSLTNPKRIGVSSDQDVSATPESLDQYYIRI---------------PL 276
Query 608 NPKLEDLCFILQEEYHLNPETITILF-VKTRALVDALKNWIEGNPKLSFLKPGILTGRGK 666
+ KL+ L ++ + ++F ++ + A + + P +S LK L GR K
Sbjct 277 DEKLDVLWSFIKSHLK----SKILVFFSSSKQVQYAYETFRTLQPGISLLK---LYGRHK 329
Query 667 TNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 726
++ F + L AT + G+D + V+ + + + +
Sbjct 330 --------QTSRLETTVKF-TQAQYACLFATDIVARGLDFPAIDWVVQVDCPEDAVTYVH 380
Query 727 TRGRGRA--RGSKCFLLT---SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV 775
GR R K L+ G++++ + N + K MN ++ +
Sbjct 381 RVGRAARFGRQGKSLLMLLPSEEEGMLKRLENNKIEPKFMNIKQKSKKSIRPQL 434
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 65/435 (15%), Positives = 143/435 (33%), Gaps = 29/435 (7%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELAL 252
++ E L+++++ D + + + +L +++++ S Q +
Sbjct 23 EEAELLKLQERIDQYDPAVDEKSISQFSDLPITQETLRGLNESSFMSLTDI---QKKTIP 79
Query 253 PAMKGKNTIICAPTGCGKTFVSLLICEHHL--KKFPQGQKGKVVFFANQIPVYEQQKSVF 310
A+KG++ + A TG GKT L+ L K + + + + Q V
Sbjct 80 IALKGEDLMGTARTGSGKTLAFLIPVVESLIRNKITEHDGLAALIVSPTRELAVQTFEVL 139
Query 311 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMI 370
+K + + + ++G + ++ V +I++ TP + +L + S +++
Sbjct 140 TKIGKYNTFSAGLVTGG-KDVQYEKERVSRMNILVGTPGRISQHLNEAVGMETSNLQVLV 198
Query 371 FDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKL 430
DE + F + G P Q + +A+V +L ++
Sbjct 199 LDEADRCLD------MGFKKQIDNIVGHLPPTRQTLLFSATVSDSVKDLARLSLTNPKRI 252
Query 431 CASLDASVIATVKHNLEELEQVVYK--PQKFFRKVESRISDKFKYIIAQLMRDTESLAKR 488
S D V AT E L+Q + + + S I K I L+ + S +
Sbjct 253 GVSSDQDVSATP----ESLDQYYIRIPLDEKLDVLWSFIKSHLKSKI--LVFFSSSKQVQ 306
Query 489 ICKDLENLSQIQNREFGTQKYEQWIVTVQKAC--MVFQMPDKDEESRICKALFLYTSHLR 546
+ Q + ++ Q + + L
Sbjct 307 YAYETFRTLQPGISLLKLYGRHKQTSRLETTVKFTQAQYACLFATDIVARGLDFPAIDWV 366
Query 547 KYNDA-----LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
D + R K + + +++ + E K ++ S
Sbjct 367 VQVDCPEDAVTYVHRVGRAARFGRQGKSLLMLLPSEEEGMLKRLENNKIEPKFMNIKQKS 426
Query 602 RDPSNENPKLEDLCF 616
+ + P+L+ LCF
Sbjct 427 K--KSIRPQLQSLCF 439
>sp|A7TFZ9|DBP6_VANPO ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397
/ CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=DBP6 PE=3 SV=1
Length=637
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (3%)
Query 259 NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHG 318
+ ++ A TG GKT + L K K + + + Q F+ +
Sbjct 230 DVLVNASTGSGKTLAYSIPILQILSK-RTVNKLRALVIVPTKLLINQVYETFNNLAQGTS 288
Query 319 YRVTGISGATAENVPVEQIVENN-DIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
V+ + +++++N DI+I TP LV++L+ G + L ++ DE
Sbjct 289 LIVSISKLENSLKEENKKLLQNEPDILITTPGRLVDHLQSGAVN-LRNLKFLVLDEA 344
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/336 (17%), Positives = 104/336 (31%), Gaps = 72/336 (21%)
Query 472 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEE 531
+A + + L+KR L L + + Q YE + Q ++ +
Sbjct 240 GKTLAYSIPILQILSKRTVNKLRALVIVPTKLLINQVYETFNNLAQGTSLIVSI------ 293
Query 532 SRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFE 591
S++ +L L + ++I+ R+ D L N++ DE ++ L Q F+
Sbjct 294 SKLENSLKEENKKLLQNEPDILITTPGRLVDHLQSGAVNLRNLKFLVLDEADRLLNQSFQ 353
Query 592 EKLQELESVSRDPSNENP------------------------------------KLEDLC 615
EL + + ++ KL L
Sbjct 354 NWCNELLNKLKTDKQDHMPGNIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSVKLYHLP 413
Query 616 FILQEEYHLNPETIT-------------------ILFVKTRALVDALKNWIEGNPKLSFL 656
+LQE P T ++FVK+ L + + + L
Sbjct 414 RMLQEYNLHIPTAKTSYKPLFLLRLLSEINGSKMLVFVKSNESSLRLASLLSIMIEHK-L 472
Query 657 KPGILTGRGKTNQNTGMTLPAQKCILDAF---KASGDHNILIATSVADEGIDIAQCNLVI 713
+N I++ F + +LI T V G+DI V+
Sbjct 473 GSQFDINSVNSNNTKAENRR----IVNEFASNNNTSKVQVLITTDVMSRGVDINDITDVL 528
Query 714 LYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAG 746
Y+ + + I GR RA +G+ +L
Sbjct 529 NYDVPISSQQYIHRCGRTARAQSKGTAYNMLIGKGE 564
>sp|A4TQB3|RAPA_YERPP RNA polymerase-associated protein RapA OS=Yersinia
pestis (strain Pestoides F) OX=386656 GN=rapA PE=3
SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHM----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q1CMQ6|RAPA_YERPN RNA polymerase-associated protein RapA OS=Yersinia
pestis bv. Antiqua (strain Nepal516) OX=377628 GN=rapA
PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHM----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A9R154|RAPA_YERPG RNA polymerase-associated protein RapA OS=Yersinia
pestis bv. Antiqua (strain Angola) OX=349746 GN=rapA
PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHM----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q8ZII0|RAPA_YERPE RNA polymerase-associated protein RapA OS=Yersinia
pestis OX=632 GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHM----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q1C1Y2|RAPA_YERPA RNA polymerase-associated protein RapA OS=Yersinia
pestis bv. Antiqua (strain Antiqua) OX=360102 GN=rapA
PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHM----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q56243|UVRB_THET8 UvrABC system protein B OS=Thermus thermophilus
(strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=uvrB
PE=1 SV=2
Length=665
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/282 (14%), Positives = 99/282 (35%), Gaps = 32/282 (11%)
Query 530 EESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD-----FFSNVRAAGFDEIEQ 584
+ + + + L Y L + R ++L+ F S
Sbjct 341 QLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSG 400
Query 585 DLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALK 644
+ ++ L+ + R EN ++ DL ++E T++ V T + + L
Sbjct 401 RVVEQIIRPTGLLDPLVRVKPTEN-QILDLMEGIRERAARGE--RTLVTVLTVRMAEELT 457
Query 645 NWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGI 704
+++ + ++ L + + ++ ++ + G ++ L+ ++ EG+
Sbjct 458 SFLVEH----GIRARYL--------HHELDAFERQALIRDLRL-GHYDCLVGINLLREGL 504
Query 705 DIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKE 758
DI + +LV + + + +IQT GR R + +L A + + +E
Sbjct 505 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWL---YADRVSEAMQRAIEE 561
Query 759 KMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPV 800
++ + + E + + IR + P+
Sbjct 562 TNRRRALQEAYNLEHGITPETVR--KEVRAVIRPEGYEEAPL 601
>sp|Q55681|RECG_SYNY3 ATP-dependent DNA helicase RecG OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=recG PE=3
SV=1
Length=831
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 102/329 (31%), Gaps = 39/329 (12%)
Query 216 DPECQNLSENSCPPSEVSDT-NLYSPFKPRNYQLELALPAMKG------KNTIICAPTGC 268
+ + Q S P E+ + + PF+ Q + ++ N ++ G
Sbjct 378 EQKQQQQSAIFTPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGS 437
Query 269 GKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGAT 328
GKT V + L+ + A + EQ +F V ++G+T
Sbjct 438 GKTVVGVFAILAALQG-----GYQAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGST 492
Query 329 AENVPVEQIVENNDIIILTPQILVNNLKKGTI---PSLSIFTLMIFDECHNTSKQHPYNM 385
E + + T Q+ + I + L++ DE H
Sbjct 493 KTAKRREIHAQ-----LSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHR--------- 538
Query 386 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGD-AKNTDEALDYICKLCASLDASVIATVKH 444
F + + G P V+ +TA+ A L+ I T
Sbjct 539 --FGVQQRAKLLAKGNAPHVLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVI 596
Query 445 NLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLA-KRICKDLENLSQIQNRE 503
+E +PQ + + YII + ++E L K ++ + L++
Sbjct 597 TAKE------RPQMYELIRREVAQGRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPN 650
Query 504 FGTQKYEQWIVTVQKACMVFQMPDKDEES 532
F + + +K + +K E
Sbjct 651 FNIGLLHGRLKSAEKEAALTAFREKQTEI 679
Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 17/114 (15%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
+ +L I + + ++ L AF+ I+++T+V + G+D+
Sbjct 638 EEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREK-QTEIIVSTTVIEVGVDVPNAT 696
Query 711 LVI-----LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEK 759
+++ + + ++ GRG S C L+T++ ++++ + ++
Sbjct 697 VMVIENAERFGLSQ-LHQLRGRVGRGSH-QSYCLLVTNSKSNDARQRLGVMEQS 748
>sp|A7TJS7|SPB4_VANPO ATP-dependent rRNA helicase SPB4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294 / BCRC
21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907
GN=SPB4 PE=3 SV=1
Length=607
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 117/364 (32%), Gaps = 23/364 (6%)
Query 407 GLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 466
G T S + + + K+ S+I + +EL + ++ + F +
Sbjct 56 GKTVSFVIPIFEKIVQEEANTTKMKKGHFHSLIVSPT---KELAKQIHSVFESFLEHYPE 112
Query 467 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 526
+ + + + +++ + +EN QI G + + K M M
Sbjct 113 NLYPIRSQLL-VGTNVKTVRDDVSDFMENKPQILIGTPGR-ILDFLKIPSVKTSMC-SMV 169
Query 527 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDL 586
DE R+ F L+ + + I R + +
Sbjct 170 ILDEADRLLDVSF-----LKDMENIMNILPKQRRTGLFSATITSAGDNIFKTGLRNPVKV 224
Query 587 TQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNW 646
T + + + + KLE + I+ I + T V ++
Sbjct 225 TVNSKSQAPSSLKIDCAVVETDKKLEQVISIINNYKFK----KCIAYFPTCHSVTYFYSF 280
Query 647 IEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 706
++ K +K I + + + A+ L+ F + + +L+ T VA GIDI
Sbjct 281 MQYLLKKGIIKEEIQI----YSLHGKLQTSARIKTLETFTETISNAVLLTTDVAARGIDI 336
Query 707 AQCNLVILYEYVGNVIKMIQTRGRGRARG--SKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
+LV+ + + + GR K + E++ I + K +N
Sbjct 337 PDVDLVLQLDPPTDPEVFLHRCGRTGRANKLGKAITFLTPGR--EEDYIPFMEVKNINLE 394
Query 765 ILRL 768
+ L
Sbjct 395 EISL 398
Score = 43.6 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 28/136 (21%), Positives = 56/136 (41%), Gaps = 17/136 (13%)
Query 255 MKGKNTIICAP--TGCGKTFVSLLICEHHL-KKFPQGQKGK-----VVFFANQIPVYEQQ 306
+ +N + TG GKT ++ + ++ K K + + + +Q
Sbjct 40 LFARNKDVVVDSVTGSGKTVSFVIPIFEKIVQEEANTTKMKKGHFHSLIVSPTKELAKQI 99
Query 307 KSVFSKYFE-----RHGYRVTGISGATAENVPVE--QIVENN-DIIILTPQILVNNLKKG 358
SVF + E + R + G + V + +EN I+I TP +++ LK
Sbjct 100 HSVFESFLEHYPENLYPIRSQLLVGTNVKTVRDDVSDFMENKPQILIGTPGRILDFLKIP 159
Query 359 TIPSLSIFTLMIFDEC 374
++ S+ +++I DE
Sbjct 160 SV-KTSMCSMVILDEA 174
>sp|Q9JIM3|ER6L2_MOUSE DNA excision repair protein ERCC-6-like
2 OS=Mus musculus OX=10090 GN=Ercc6l2 PE=1 SV=3
Length=1537
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 105/616 (17%), Positives = 199/616 (32%), Gaps = 82/616 (13%)
Query 181 KFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPS----EVSDTN 236
F E K I ++++ + S IF +D E + P ++S+
Sbjct 57 DFQE-----KTIPLQRLQEVKSTKDYSRSLIFDDKDLEKPYFPDRKIPSLASAFQLSEDG 111
Query 237 LYSPFKP----RNYQLE----LALPAMKGKNTIICAPTGCGKT------FVSLL------ 276
P+ R+YQ E L ++G+ I+ G GKT ++L
Sbjct 112 DSIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTR 171
Query 277 ----------ICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGY-RVTGIS 325
+ + KK P K + A +Y + + GY RVT +
Sbjct 172 EDIENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLY-----NWKDELDTWGYFRVTVLH 226
Query 326 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNM 385
G+ +N + +I + T + L L++ + SL ++ +I DE H K P
Sbjct 227 GSKKDNELLRLKQRKCEIALTTYETLRLCLEE--LNSLE-WSAIIVDEAHR-IKN-PKAR 281
Query 386 IMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHN 445
+ + IGLT +V + K +D+
Sbjct 282 V-TEVMKAVKCKVR------IGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDP 334
Query 446 LEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG 505
+E ++ ++ ++ K L R + ++ K + + +F
Sbjct 335 VEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQ 394
Query 506 TQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 565
Y+ + T A ++ S + Y ++ R + + + +
Sbjct 395 KAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSYLTVLQKVA 454
Query 566 YLKDFFSNVRAAGFDEI-EQDLTQRFEEKLQELESVSRDPSNE---NPKL---EDLCFIL 618
+ E + + R + + S+D + E +PK + L
Sbjct 455 NHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQL 514
Query 619 QEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 678
+ + +LF L + ++ S L L G K+ +
Sbjct 515 LNHFRKQRD-KVLLFS----FSTKLLDVLQQYCMASGLDYRRLDGSTKS--------EER 561
Query 679 KCILDAFKASGDHN-ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRA---- 733
I+ F +S D N L++T G++ N+VIL++ N +Q R
Sbjct 562 LKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQC 621
Query 734 RGSKCFLLTSNAGVIE 749
R K L S V E
Sbjct 622 RDVKVLRLISLGTVEE 637
>sp|A0PP48|UVRB_MYCUA UvrABC system protein B OS=Mycobacterium
ulcerans (strain Agy99) OX=362242 GN=uvrB PE=3 SV=1
Length=701
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 66/175 (38%), Gaps = 12/175 (7%)
Query 634 VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 693
V R LV L + + L+ GI ++ + + +L + G++++
Sbjct 446 VDQRVLVTTLTKKMAEDLTDYLLEMGIRV----RYLHSEVDTLRRVELLRQLRL-GEYDV 500
Query 694 LIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGV 747
L+ ++ EG+D+ + +LV + + + +IQT GR R + +
Sbjct 501 LVGINLLREGLDLPEVSLVAILDADKEGFLRSARSLIQTIGRAARNVSGEVHMYADKITD 560
Query 748 IEKEQINMYKEKMMND-SILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVP 801
KE I+ + + + D R+KI I D E + VP
Sbjct 561 SMKEAIDETERRRAKQVAYNEANGIDPQPLRKKIADILDQVYREADDTEAAESVP 615
>sp|A1RFP5|RAPA_SHESW RNA polymerase-associated protein RapA OS=Shewanella
sp. (strain W3-18-1) OX=351745 GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 62/474 (13%), Positives = 138/474 (29%), Gaps = 65/474 (14%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +V+ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERVLVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + ++D T Q+ L+ K+ + + L++ DE H+
Sbjct 227 SVFDEDRCVEAYADHDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
+ + Q + S +P V+ LTA+ D
Sbjct 285 --WTEEAPSRAYQVVEALSEVVPGVLLLTATP----------------------DQLGHE 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ ++ ++++ Y + + + ++ N
Sbjct 321 SHFARLRLLD-----PDRFYD-YDAFLAEENSYKDVAIAAEALAGNAKLPDAAINSLTEL 374
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
E + I V Q + + R ++
Sbjct 375 LSEKDIAPSIRLIQADGIDSDVQQAARSELLQELLDRHGTGRVLYRNSRASVKGFPKRFF 434
Query 561 KDALDYL-KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDLCFI 617
+ + + + R + + L + + L ++L D S K +
Sbjct 435 NPHPQTMPEQYLTAARVSSMMGGHKTLEAKAAQALSPEKLYQEFEDNSASWWKFDPRVDW 494
Query 618 LQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPA 677
L + ++ +L+ + G T + GM++
Sbjct 495 LIAFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHEGMSIIE 543
Query 678 QKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G LI + + EG + + ++L++ N + Q GR
Sbjct 544 RDKAGAYFAQEEGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|C4K0Z4|UVRB_RICPU UvrABC system protein B OS=Rickettsia peacockii
(strain Rustic) OX=562019 GN=uvrB PE=3 SV=1
Length=661
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/398 (15%), Positives = 124/398 (31%), Gaps = 56/398 (14%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN---- 501
PQ+ S I ++ + + L +T+ L +R DLE L++ +
Sbjct 246 SHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCKGV 305
Query 502 ---REFGTQK-------------YEQWIVTVQKACMVF----QMPDKDEESRICKALFLY 541
F T + E ++ V ++ + M + D + +
Sbjct 306 ENYSRFFTGRHAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEHGF 365
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
N L E + + ++ +L R L
Sbjct 366 RLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLD--PECI 423
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P+ ++EDL +Q + ++ T+ + + L +++ K L
Sbjct 424 IKPATN--QVEDLISEIQT--TIAQGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL 475
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-- 719
++ + + IL + G ++L+ ++ EG+DI +C LV + +
Sbjct 476 --------HSNVHTLERIEILRDLR-QGTIDVLVGINLLREGLDIPECGLVAILDADKEG 526
Query 720 ---NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +IQT GR R + L I+K + + +
Sbjct 527 FLRSEVSLIQTIGRAARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586
Query 775 VFREKILHIQTHEKFI-RDSQEKPKPVPDKENKKLLCR 811
I + EK + +++ + D K
Sbjct 587 TINRAIHALAEFEKIDSKLDKKQAHTLFDNPAKLKTHI 624
>sp|Q815I3|UVRB_BACCR UvrABC system protein B OS=Bacillus cereus
(strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC
15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711) OX=226900 GN=uvrB
PE=3 SV=1
Length=658
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/197 (15%), Positives = 69/197 (35%), Gaps = 22/197 (11%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ ++ T+ + + L ++++ G T ++ + + I+
Sbjct 441 RIAKNERVLITTLTKKMSEDLTDYLKD------------VGIKVTYLHSEIKTLERIEII 488
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGS 736
+ G ++L+ ++ EG+DI + +LV + + + +IQT GR R
Sbjct 489 RDLRL-GKFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNENG 547
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEK 796
+ + A I K +E SI + + + I + E+
Sbjct 548 RVIM---YADRITKSMGIAIEETKRRRSIQEAYNEEHGITPKTIQKGVRDVIRATTAAEE 604
Query 797 PKPVPDKENKKLLCRKC 813
+ KK+ ++
Sbjct 605 IETYEATPAKKMTKKER 621
>sp|B1JKV7|RAPA_YERPY RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) OX=502800
GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|Q66EN4|RAPA_YERPS RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) OX=273123
GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|B2K4B3|RAPA_YERPB RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) OX=502801
GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A7FM96|RAPA_YERP3 RNA polymerase-associated protein RapA OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
OX=349747 GN=rapA PE=3 SV=1
Length=968
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 67/492 (14%), Positives = 158/492 (32%), Gaps = 61/492 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----S 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R R + + ++ + ++I + + N ++ +
Sbjct 211 LQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQMVICSLDFVRRNKQRLEQLA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ ++
Sbjct 271 DASWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATPEQLGQQS--- 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ +L LD + E+ V + Q+ +R + ++ L+
Sbjct 324 ---HFARL-RLLD-------PDRFHDYEEFVNE-QQKYRPIADAVT---------LLLGG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E L L L Q+ E + + A D +
Sbjct 363 ERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ L R ++ L +++
Sbjct 419 RNTRNGVKGFPHRVLHQIKLPLP--TQYQTAIKVSGIMGAKKTLDARAKDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRGEKVLVICAQAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIA-QCNLVILYEYV 718
+ G++L + F + D +L+ + + EG + C LV+ ++
Sbjct 534 F--------HEGLSLIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVM-FDLP 584
Query 719 GNVIKMIQTRGR 730
N + Q GR
Sbjct 585 FNPDLLEQRIGR 596
>sp|A8GR53|UVRB_RICRS UvrABC system protein B OS=Rickettsia rickettsii
(strain Sheila Smith) OX=392021 GN=uvrB PE=3 SV=1
Length=661
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/398 (15%), Positives = 124/398 (31%), Gaps = 56/398 (14%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN---- 501
PQ+ S I ++ + + L +T+ L +R DLE L++ +
Sbjct 246 SHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCKGV 305
Query 502 ---REFGTQK-------------YEQWIVTVQKACMVF----QMPDKDEESRICKALFLY 541
F T + E ++ V ++ + M + D + +
Sbjct 306 ENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEHGF 365
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
N L E + + ++ +L R L
Sbjct 366 RLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLD--PECI 423
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P+ ++EDL +Q + ++ T+ + + L +++ K L
Sbjct 424 IKPATN--QVEDLISEIQT--TIAQGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL 475
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-- 719
++ + + IL + G ++L+ ++ EG+DI +C LV + +
Sbjct 476 --------HSNVHTLERIEILRDLR-QGTIDVLVGINLLREGLDIPECGLVAILDADKEG 526
Query 720 ---NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +IQT GR R + L I+K + + +
Sbjct 527 FLRSEVSLIQTIGRAARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586
Query 775 VFREKILHIQTHEKFI-RDSQEKPKPVPDKENKKLLCR 811
I + EK + +++ + D K
Sbjct 587 TINRAIHALAEFEKIDSKLDKKQAHTLFDNPAKLKTHI 624
>sp|B0BWK0|UVRB_RICRO UvrABC system protein B OS=Rickettsia rickettsii
(strain Iowa) OX=452659 GN=uvrB PE=3 SV=1
Length=661
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/398 (15%), Positives = 124/398 (31%), Gaps = 56/398 (14%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN---- 501
PQ+ S I ++ + + L +T+ L +R DLE L++ +
Sbjct 246 SHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCKGV 305
Query 502 ---REFGTQK-------------YEQWIVTVQKACMVF----QMPDKDEESRICKALFLY 541
F T + E ++ V ++ + M + D + +
Sbjct 306 ENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEHGF 365
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
N L E + + ++ +L R L
Sbjct 366 RLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLD--PECI 423
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P+ ++EDL +Q + ++ T+ + + L +++ K L
Sbjct 424 IKPATN--QVEDLISEIQT--TIAQGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL 475
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-- 719
++ + + IL + G ++L+ ++ EG+DI +C LV + +
Sbjct 476 --------HSNVHTLERIEILRDLR-QGTIDVLVGINLLREGLDIPECGLVAILDADKEG 526
Query 720 ---NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +IQT GR R + L I+K + + +
Sbjct 527 FLRSEVSLIQTIGRAARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586
Query 775 VFREKILHIQTHEKFI-RDSQEKPKPVPDKENKKLLCR 811
I + EK + +++ + D K
Sbjct 587 TINRAIHALAEFEKIDSKLDKKQAHTLFDNPAKLKTHI 624
>sp|Q6BKH3|DBP7_DEBHA ATP-dependent RNA helicase DBP7 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 /
JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=DBP7 PE=3 SV=1
Length=798
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/130 (22%), Positives = 45/130 (35%), Gaps = 15/130 (12%)
Query 648 EGNPKLSFLKPGILTGRGKT--NQNTGMTLPAQKCILDAF-------KASGDHNILIATS 698
+ + + G + ++ + L AF K S H+IL T
Sbjct 517 DNEEDKPSILTAPILGSNSCVYKLHGSLSQQQRATTLQAFIKEKNEGKNSAKHSILFCTD 576
Query 699 VADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR--ARGSKCFLLT---SNAGVIEKEQ 752
VA G+D+ + VI Y+ +V + GR R GS L V K +
Sbjct 577 VASRGLDLPNISSVIEYDPPFSVEDHLHRIGRSARVGNEGSAVLFLLPGNEEGYVDGKIR 636
Query 753 INMYKEKMMN 762
+ KE +
Sbjct 637 VVHPKEDNLR 646
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/125 (21%), Positives = 48/125 (38%), Gaps = 6/125 (5%)
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGK-----VVFFANQIPVYEQQKSV 309
++ + A TG GKT LL H L + + + + + Q V
Sbjct 198 ATQRDLFVKAQTGSGKTLSFLLPIFHKLMSEEKYKITRESGLFAIILVPTRELCTQIYGV 257
Query 310 FSKYFERHGYRVTGIS-GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
H + V GI G + ++ + +I++ TP L ++++ T +S
Sbjct 258 LETLVRCHHHIVPGIVIGGEKKKSEKARLRKGVNILVATPGRLADHMENTTSLDVSQLRW 317
Query 369 MIFDE 373
+I DE
Sbjct 318 LILDE 322
>sp|Q92J03|UVRB_RICCN UvrABC system protein B OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) OX=272944 GN=uvrB PE=3
SV=1
Length=661
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/398 (15%), Positives = 124/398 (31%), Gaps = 56/398 (14%)
Query 451 QVVYKPQKFFRKVESRISDKFKYIIAQLMR-----DTESLAKRICKDLENLSQIQN---- 501
PQ+ S I ++ + + L +T+ L +R DLE L++ +
Sbjct 246 SHFVMPQETVNNAISGIEEELQKRLEFLKSQDKPLETQRLNQRTQYDLEMLTETGSCKGV 305
Query 502 ---REFGTQK-------------YEQWIVTVQKACMVF----QMPDKDEESRICKALFLY 541
F T + E ++ V ++ + M + D + +
Sbjct 306 ENYSRFFTGRNAGEPPPTLFEYLPEDALLFVDESHVSVPQIRAMYNGDRARKKVLVEHGF 365
Query 542 TSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVS 601
N L E + + ++ +L R L
Sbjct 366 RLPSALDNRPLKFEEWDKFRPQTVFVSATPGPFELEETGGTVVELIIRPTGLLD--PECI 423
Query 602 RDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 661
P+ ++EDL +Q + ++ T+ + + L +++ K L
Sbjct 424 IKPATN--QVEDLISEIQT--TIAQGFRVLVTTLTKKMAEDLTAYLQELK----YKTSYL 475
Query 662 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-- 719
++ + + IL + G ++L+ ++ EG+DI +C LV + +
Sbjct 476 --------HSNVHTLERIEILRDLR-QGTIDVLVGINLLREGLDIPECGLVAILDADKEG 526
Query 720 ---NVIKMIQTRGR-GRARGSKCFLLTSN-AGVIEKEQINMYKEKMMNDSILRLQTWDEA 774
+ + +IQT GR R + L I+K + + +
Sbjct 527 FLRSEVSLIQTIGRAARNSAGRVILYADKMTKSIDKAVSETLRRRQIQQEYNEKHGIIPK 586
Query 775 VFREKILHIQTHEKFI-RDSQEKPKPVPDKENKKLLCR 811
I + EK + +++ + D K
Sbjct 587 TINRAIHALAEFEKIDSKLDKKQAHTLFDNPAKLKTHI 624
>sp|Q5T890|ER6L2_HUMAN DNA excision repair protein ERCC-6-like
2 OS=Homo sapiens OX=9606 GN=ERCC6L2 PE=1 SV=3
Length=1550
Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 103/630 (16%), Positives = 203/630 (32%), Gaps = 85/630 (13%)
Query 173 LALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQ---IFYQEDPECQNLSENSCPP 229
+ +++ F+ + + + + + L++ D IF ED E P
Sbjct 42 ITVDENGKSFAVVLYADFQERKIPLKQLQEVKFVKDCPRNLIFDDEDLEKPYFPNRKFPS 101
Query 230 SEV----SDTNLYSPFKP----RNYQLELALPAMKGKNT-----IICAPTGCGKT----- 271
S V SD P+ R+YQ E + G I+ G GKT
Sbjct 102 SSVAFKLSDNGDSIPYTINRYLRDYQRE-GTRFLYGHYIHGGGCILGDDMGLGKTVQVIS 160
Query 272 FVSLLI----------------CEHHLKKFPQGQKGKVVFF--ANQIPVYEQQKSVFSKY 313
F++ ++ +KK P K +F A +Y +
Sbjct 161 FLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLY-----NWKDE 215
Query 314 FERHGY-RVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 372
+ GY RVT + G +N + +I + T + L L + + SL ++ +I D
Sbjct 216 LDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLDE--LNSLE-WSAVIVD 272
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E H K P + + IGLT ++ + K +D+
Sbjct 273 EAHR-IKN-PKARV-TEVMKALKCNVR------IGLTGTILQNNMKELWCVMDWAVPGLL 323
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
+E ++ ++ + K + +R T++L K
Sbjct 324 GSGTYFKKQFSDPVEHGQRHTATKRELATG-RKAMQRLAKKMSGWFLRRTKTLIKDQLPK 382
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPD------KDEESRICKALFLYTSHLR 546
E+ + + Q ++ + ++ Q + + C + ++
Sbjct 383 KEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVK 442
Query 547 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 606
+ + S + I + RF + +Q+ + + + +
Sbjct 443 TLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFE-TL 501
Query 607 ENPKLEDLCFILQEEYHLNPETI--TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
+PK +LQ+ + + +LF L + ++ S L L G
Sbjct 502 SDPKYSGKMKVLQQLLNHCRKNRDKVLLFS----FSTKLLDVLQQYCMASGLDYRRLDGS 557
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHN-ILIATSVADEGIDIAQCNLVILYEYVGNVIK 723
K+ + I+ F ++ D N L++T G++ N+V+L++ N
Sbjct 558 TKS--------EERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPAN 609
Query 724 MIQTRGRGRA----RGSKCFLLTSNAGVIE 749
+Q R R K L S V E
Sbjct 610 DLQAIDRAYRIGQCRDVKVLRLISLGTVEE 639
>sp|A4SR75|RAPA_AERS4 RNA polymerase-associated protein RapA OS=Aeromonas
salmonicida (strain A449) OX=382245 GN=rapA PE=3
SV=1
Length=955
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 73/475 (15%), Positives = 152/475 (32%), Gaps = 80/475 (17%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQ----QKSVFSKYFERHGYRVT 322
G GKT + +I L G+ +V+ + Q F+ +F
Sbjct 179 GLGKTIEAGMIIHQQL---LSGRAHRVLILLP-ETLQHQWLVEMLRRFNLHFSLFDEERC 234
Query 323 GISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN------ 376
+ A AEN E ++I + L ++ + + L++ DE H+
Sbjct 235 IEAFADAENP-----FETEQLVICSLDFLRKKRRRFEQVLEAEWDLLVVDEAHHLEWSID 289
Query 377 TSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDA 436
+ Y M+ + +P V+ LTA+ ++ + +L LD
Sbjct 290 APSR-AYEMV---------EALAEQVPGVLLLTATPDQLGHQS------HFARL-RLLDP 332
Query 437 SVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENL 496
+ L E ++ + KV S + D E+L+ + L +
Sbjct 333 ERFYDYEAFLAE--------EQAYGKVASAAQELL---------DGETLSDEARQILAS- 374
Query 497 SQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 556
Q++ + Q V K + HL Y L
Sbjct 375 -QLEGLDMSDAAARQQAV--AKLLDQHGTGRVLFRNSRANIQGFPERHLNVYPMPLPEQY 431
Query 557 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 616
+K + A + + Q+FE E+ + + +P+++ L
Sbjct 432 KTAIKVMGMMGGNGGDLQTRALRYLYPEKIFQQFEG-----ENATW--TQFDPRVDWLLE 484
Query 617 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLP 676
+L + ++ A AL+ + ++ + + GM++
Sbjct 485 LLLS----ARQQKVLVICSEAATAIALEEALRTR---EGIRGTVF--------HEGMSIL 529
Query 677 AQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ F + G +L+ + + EG + + ++L++ N + Q GR
Sbjct 530 ERDKASAYFAQEDGGAQVLLCSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 584
>sp|Q12RU8|RAPA_SHEDO RNA polymerase-associated protein RapA OS=Shewanella
denitrificans (strain OS217 / ATCC BAA-1090 / DSM
15013) OX=318161 GN=rapA PE=3 SV=1
Length=968
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 63/477 (13%), Positives = 142/477 (30%), Gaps = 71/477 (15%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIMHQQL---LTGRAERILVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNT--S 378
+ + + +ND T Q+ L+ K+ + + L++ DE H+ S
Sbjct 227 SVFDEDRCVEAYADNDNPFYTEQLVICSLELLRKKKRLDQALDADWDLLVVDEAHHLEWS 286
Query 379 KQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASV 438
+ P + Q + S +P V+ LTA+ D
Sbjct 287 EDAP------SRAYQVVEALSEVVPGVLLLTATP----------------------DQLG 318
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+ L L+ P +F+ ++ +A+ K + +L++
Sbjct 319 HQSHFARLRLLD-----PDRFYDYDAFLTEEQGYQAVAEAAEALSGEKKLNDSAINSLTE 373
Query 499 IQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA 558
+ + + ++ + Q +D + L + + A +
Sbjct 374 LLSEK--DIAPSIRLIQANEVDPEQQQAARDGLLQELLDRHGTGRVLYRNSRASVKGFPK 431
Query 559 RMKDALDYL--KDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESVSRDPSNENPKLEDL 614
R+ + + + + R ++ + E L ++L S K +
Sbjct 432 RIFNPHPQAMPEQYVTAERVNAMMSGKKTPQAKALEALSPEKLYQAFESDSASWWKFDTR 491
Query 615 CFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMT 674
L + ++ +L+ + G T + GM+
Sbjct 492 VDWLIAFLKSHRSKKVLIIASQAETALSLEEALRTRE-----------GILATVFHEGMS 540
Query 675 LPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
+ + F + LI + + EG + + ++L++ N + Q GR
Sbjct 541 IIERDKAGAYFAQEDAGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGR 597
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401
OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661
/ JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1401 PE=3
SV=1
Length=808
Score = 61.7 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/257 (18%), Positives = 93/257 (36%), Gaps = 14/257 (5%)
Query 122 DIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNK 181
D I CL+ + + + + E + C + KE K + +EK +
Sbjct 94 DYIELCPFCLLKNIYKRL--TRNNRCRYGNLEICINCGINEIKEE-VKISEEFIEKFLKR 150
Query 182 FSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPF 241
F ++ V ++ D + I ++ E + E P
Sbjct 151 FKDVDKVLSLLRIRNPLDKPELTRYDIITGSEEDKIENYKIDELDIPEELKEIIKSRGIE 210
Query 242 KPRNYQ-LELALPAMKGKNTIICAPTGCGKTFVSLLI-CEHHLKKFPQGQKGKVVFFANQ 299
+ Q L + + G + +I + T GKT + L ++ +K K +F
Sbjct 211 ELLPVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKT-----GKKFLFLVPL 265
Query 300 IPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVE-QIVENNDIIILTPQILVNNLKKG 358
+ + Q+ F + +E+ G++V+ G V+ + + DII+ T + + ++
Sbjct 266 VALANQKYLEFKERYEKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRT- 324
Query 359 TIPSLSIFTLMIFDECH 375
L ++ DE H
Sbjct 325 --KRLKDIGTVVIDEIH 339
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 23/182 (13%)
Query 586 LTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 645
R + + D + N E + Q ++F +R + L
Sbjct 390 YNGRPVPLERHIIFCKNDFAKLNIIKEIVKREWQNISKFGYRGQCLIFTYSRKRAEYLAK 449
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
++ +K G GM ++ + D F A+ ++ T+ G+D
Sbjct 450 ALKS----KGIKAEFYHG--------GMEYIKRRKVEDDF-ANQKIQCVVTTAALSAGVD 496
Query 706 IAQCNLVILYEYV-----GNVIKMIQTRGRGRARG----SKCFLLTSNAGVIEKEQINMY 756
+ VIL N + Q GR +G K +LL + N
Sbjct 497 FPA-STVILESLAMGADWLNPAEFQQMCGRAGRKGMHEIGKVYLLVEIGKKYHAKMENTE 555
Query 757 KE 758
E
Sbjct 556 DE 557
>sp|Q5ZJF6|DDX10_CHICK Probable ATP-dependent RNA helicase DDX10
OS=Gallus gallus OX=9031 GN=DDX10 PE=2 SV=1
Length=875
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query 254 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG--KVVFFANQIPVYEQQKSVFS 311
A++GK+ + A TG GKT ++ L + V+ + + Q V
Sbjct 107 ALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIISPTRELAFQTFKVLR 166
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF 371
K + H + I G + + + + +++I TP L+ ++ + + S ++I
Sbjct 167 KVGKNHDFSAGLIIGG-KDLKEESERIHHINMLICTPGRLLQHMDETSYFYASDLQMLIL 225
Query 372 DEC 374
DE
Sbjct 226 DEA 228
Score = 61.0 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/135 (19%), Positives = 44/135 (33%), Gaps = 14/135 (10%)
Query 610 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWI-EGNPKLSFLKPGILTGRGKTN 668
+L+ +L + + +I+F + V L + P L L
Sbjct 300 ELQHKINVLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVL-----------A 348
Query 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
+ + + F +L AT +A G+D N VI ++ + I
Sbjct 349 LHGKQQQMKRMEVYTCF-VRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRV 407
Query 729 GR-GRARGSKCFLLT 742
GR R + LL
Sbjct 408 GRTARYKEGGEALLV 422
>sp|Q5UYC8|UVRB_HALMA UvrABC system protein B OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
OX=272569 GN=uvrB PE=3 SV=1
Length=686
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/189 (15%), Positives = 76/189 (40%), Gaps = 24/189 (13%)
Query 576 AAGFDEIEQDLTQRFEEKL---QELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 632
+A + E+D + + E++ L + + ++ ++EDL + + ++ + ++
Sbjct 406 SATPGDYERDHSDQVVEQIVRPTHLVDPAVEIASATGQVEDLLERIDD--RVDRDERVLV 463
Query 633 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 692
T+ + + L ++E +G + + ++ + + GD +
Sbjct 464 TTLTKRMAEDLTEYLEE------------SGVNVAYMHDETDTLERHELIRSLRL-GDID 510
Query 693 ILIATSVADEGIDIAQCNLVILYEY-----VGNVIKMIQTRGR-GRARGSKCFLLTSNAG 746
+L+ ++ EG+DI + +LV + + + + ++QT GR R + L
Sbjct 511 VLVGINLLREGLDIPEVSLVAILDADQEGFLRSETTLVQTMGRAARNVNGEVVLYADERS 570
Query 747 VIEKEQINM 755
+ I
Sbjct 571 NAMQSAIQE 579
>sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152
/ DSM 7513) OX=272624 GN=uvrB PE=3 SV=1
Length=663
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/214 (13%), Positives = 71/214 (33%), Gaps = 23/214 (11%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+ ++ T+ + + L ++ + +K L ++ + + I+ +
Sbjct 445 GSRILVTTLTKRMAEDLTEYLSEH----GIKVRYL--------HSDVDTVERMEIIRDLR 492
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFL 740
G+ ++L+ ++ EG+D+ + LV + + + +IQT GR R + L
Sbjct 493 L-GEFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRAARNVKGRAIL 551
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPV 800
A I E + + + K ++ + K K V
Sbjct 552 ---YADTITGSMQRALTETERRREKQKAFNLEHGI-TPKGINKSVEDILEGAYIGKRKTV 607
Query 801 PDKENKKLLCRKCKALACYTADVRVIEECHYTVL 834
+++ + + L + H +
Sbjct 608 VAEKSPQYTHWSPQELVKQINALEKQMYSHAQNM 641
>sp|A6M2Z0|UVRB_CLOB8 UvrABC system protein B OS=Clostridium beijerinckii
(strain ATCC 51743 / NCIMB 8052) OX=290402 GN=uvrB
PE=3 SV=1
Length=657
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/150 (19%), Positives = 57/150 (38%), Gaps = 22/150 (15%)
Query 627 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
++ T+ + + L ++ I G T ++ + + I+ +
Sbjct 444 GFRILITTLTKRMSEDLTKYL------------IELGVKTTYMHSDIDTIERMKIIRDLR 491
Query 687 ASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFL 740
G++++L+ ++ EG+DI + LV + + + +IQT GR R SK +
Sbjct 492 L-GEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQTIGRAARNSESKVIM 550
Query 741 LTSNAGVIEKEQINMYKEKMMNDSILRLQT 770
A I K KE +I +
Sbjct 551 ---YADNITKSMDKAMKETERRRAIQKDYN 577
>sp|Q3SIK7|UVRB_THIDA UvrABC system protein B OS=Thiobacillus
denitrificans (strain ATCC 25259) OX=292415 GN=uvrB PE=3 SV=1
Length=675
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/248 (12%), Positives = 80/248 (32%), Gaps = 30/248 (12%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E + ++ + A ++
Sbjct 354 GMYKGDRSRKENLVDYGFRLPSALDNRPLKFEEFEALMPQTVFVSATPAKYEAEHAGQVV 413
Query 584 QDLTQR--FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 641
+ L + + + E+ V+ + +++ + ++ T+ + +
Sbjct 414 EQLVRPTGLIDPIVEVRPVTTQVDDLMSEVKKRVAV---------GERVLVTTLTKRMAE 464
Query 642 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVAD 701
L +++ + G ++ + + I+ + G+ ++L+ ++
Sbjct 465 DLTDYLAEH------------GVKVRYLHSDIDTVERVEIIRDLRL-GEFDVLVGINLLR 511
Query 702 EGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINM 755
EG+DI + +LV + + + +IQT GR R L + I
Sbjct 512 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARHLNGTAILYADRITDSMQRAIGE 571
Query 756 YKEKMMND 763
+ +
Sbjct 572 TERRRAKQ 579
>sp|Q30ZK3|UVRB_OLEA2 UvrABC system protein B OS=Oleidesulfovibrio
alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20) OX=207559
GN=uvrB PE=3 SV=1
Length=682
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/160 (14%), Positives = 56/160 (35%), Gaps = 22/160 (14%)
Query 623 HLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 682
+ ++ T+ + + L ++ G ++ + + I+
Sbjct 443 RTARDERVLVTTLTKRMAEDLTEYLTS------------MGVSARYLHSDIDTMERMAII 490
Query 683 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGS 736
A + + ++L+ ++ EG+DI + +LV + + + +IQT GR R
Sbjct 491 QALRRK-EFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSTGSLIQTFGRAARNVDG 549
Query 737 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVF 776
+ + A + + +E RL + +
Sbjct 550 RVIM---YADSVTRSMTAAMQETERRREKQRLYNEEHGIE 586
Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 11/56 (20%), Positives = 19/56 (34%), Gaps = 8/56 (14%)
Query 266 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRV 321
TG GKTF H +++ + + A + Q + F F +
Sbjct 42 TGSGKTF----TMAHTIERCQRP----ALILAPNKTLAAQLYNEFRALFPHNAVEY 89
>sp|B5YJW4|UVRB_THEYD UvrABC system protein B OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) OX=289376
GN=uvrB PE=3 SV=1
Length=671
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 80/616 (13%), Positives = 185/616 (30%), Gaps = 98/616 (16%)
Query 236 NLYSPFKPRNYQ-------LELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG 288
+Y+ FKP+ Q +E K + + TG GKTF + ++K +
Sbjct 5 KIYTSFKPKGDQPKAIKQLVEGIKKGYKHQVLLGV--TGSGKTF----TIANVIEKVNKP 58
Query 289 QKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA---------ENVPVEQIVE 339
+ A+ + Q + F + + + +
Sbjct 59 ----TLVIAHNKTLAAQLYGELKELFPYNAVEYYVSYYDYYQPEAYIPETDTYIEKDALI 114
Query 340 NNDIIILTPQILVNNLKKGTIPSLSIFTLM--------------IFDECHNTSKQHPYNM 385
N+DI + ++ L + + ++ + + +E T +
Sbjct 115 NDDIDRMRHSATLSVLTRQDVIVVASVSCIYGIGSPDDYMSMHVTLEEGMKTERDAMLKK 174
Query 386 IMFNYLDQKLGGSSGPLPQVIG----LTASVGVGDAKNTD---EALDYICKLCASLDASV 438
++ + +V G + AS + A + + +D I ++ +
Sbjct 175 LVEILYIRAEEEFRRGAFRVRGDVVDIFASHCLDKAYRVEFFDDEIDAIYEIDPLTGSRQ 234
Query 439 IATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQ 498
+ + V P+ +K I ++ + I E L +
Sbjct 235 KRLQRIFIPPNSHWVT-PEPRLKKALETIEEELQERIKYFKERGEELFAERIEKRTRFDM 293
Query 499 IQNREFG----TQKYEQWIVTVQKACMVFQMPD-------------KDEESRICKALFLY 541
+FG + Y + + F + D +ES +
Sbjct 294 ELLSQFGHCHGIENYSRHLSGRLPGEPPFTLIDYIYAGPSKGDFLTVIDESHVTVPQIGG 353
Query 542 TSHLRKYNDALIISEHARMKDALDY----LKDFFSNVRAAGFDEIEQDLTQRFEEKLQEL 597
+ ++ R+ ALD K+F + + + + + +
Sbjct 354 MYEGDRSRKQTLVEYGFRLPSALDNRPLTFKEFEHRMNYVIYVSATPGDYEIEKSGGRIV 413
Query 598 ESVSRDPSNENPKLE------DLCFILQE-EYHLNPETITILFVKTRALVDALKNWIEGN 650
E + R +PK+E + +L+E ++ ++ T+ + + L ++
Sbjct 414 EQIIRPTGLVDPKIEVRPATNQVEDLLEEIHKRVSRGERVLVTTITKKMAEDLTDYYTT- 472
Query 651 PKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 710
G ++ + + IL + G ++LI ++ EG+D+ + +
Sbjct 473 -----------VGIKAKYLHSDIDTLERVEILKDLRL-GKFDVLIGVNLLREGLDLPEVS 520
Query 711 LVILYEYVG-----NVIKMIQTRGRG-RARGSKCFLLTSNAGVIEKEQINMYKEKMMNDS 764
LV +++ + +IQT GR R A + +E
Sbjct 521 LVAIFDADKEGFLRSERSLIQTAGRASRNINGTVIF---YADTVTDSMKKAIEETERRRE 577
Query 765 ILRLQTWDEAVFREKI 780
I + E +
Sbjct 578 IQMKYNKKNGISPETV 593
>sp|Q5WDG7|UVRB_SHOC1 UvrABC system protein B OS=Shouchella clausii
(strain KSM-K16) OX=66692 GN=uvrB PE=3 SV=1
Length=660
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/333 (14%), Positives = 119/333 (36%), Gaps = 43/333 (13%)
Query 455 KPQKFFRKVESRISDKFKYIIAQ-LMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWI 513
K +K +E + ++ + + + + + L +R DLE ++++ G + Y + +
Sbjct 255 KMKKAIANIEVELEERLSVLRKEEKLLEAQRLEQRTRYDLEMMAEMG-FCSGIENYSRHL 313
Query 514 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 573
+ + + D + + + + + + AR + +++ S
Sbjct 314 TLREAGATPYTLLDFFPKDFLLIVDESHVT--LPQVRGMYNGDRARKEILVNHGFRLPSA 371
Query 574 VRAA--GFDEIEQDLTQRF-----------EEKLQELESVSRDPSNENP--KLEDLCFIL 618
+ F+E E+ + Q E + +E + R +P ++ + +
Sbjct 372 LDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPEMVEQIIRPTGLLDPVVEVRPIEGQI 431
Query 619 QE-----EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGM 673
+ + + ++ T+ + + L ++++ G ++ +
Sbjct 432 DDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKE------------IGIKVRYLHSEV 479
Query 674 TLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGN-----VIKMIQTR 728
+ I+ + G ++LI ++ EGIDI + +LV + + +IQT
Sbjct 480 KTLERLEIIRQLRL-GTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAERSLIQTI 538
Query 729 GR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
GR R + + + IN K +
Sbjct 539 GRAARNANGRVIMYADKMTHSMEVAINETKRRR 571
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 45/306 (15%), Positives = 94/306 (31%), Gaps = 59/306 (19%)
Query 346 LTPQILVNNLKKGTIPSLSIFTLMIFDECHNT--------SKQHPYNMIMFNYLDQ---- 393
TP L++ K L+I DE H T + I+ N+ +
Sbjct 320 ATPYTLLDFFPKDF--------LLIVDESHVTLPQVRGMYNGDRARKEILVNHGFRLPSA 371
Query 394 ------KLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLE 447
K + Q + ++A+ G + ++T E ++ I + LD
Sbjct 372 LDNRPLKFEEFEEKVGQAVYVSATPGPYELEHTPEMVEQIIRPTGLLD------------ 419
Query 448 ELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE----SLAKRICKDLENLSQIQNRE 503
P R +E +I D I Q+ +D +L K++ +DL + + +
Sbjct 420 --------PVVEVRPIEGQIDDLIGQIHDQIAKDERVLVTTLTKKMAEDLTDYLKEIGIK 471
Query 504 FGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDA 563
E + + ++ D I L + ++
Sbjct 472 VRYLHSEVKTLERLEIIRQLRLGTFDVLIGINLLREGIDIPEVSLVAILDADKEGFLRAE 531
Query 564 LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYH 623
++ R A + +K+ V+ + + + E++
Sbjct 532 RSLIQTIGRAARNANGR------VIMYADKMTHSMEVAINETKRR---RQIQQAYNEQHG 582
Query 624 LNPETI 629
+ P+TI
Sbjct 583 ITPQTI 588
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens OX=9606
GN=HELQ PE=1 SV=2
Length=1101
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 95/244 (39%), Gaps = 27/244 (11%)
Query 256 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFE 315
+ KN I PT GKT V+ ++ L + V+ + + +++ S S +
Sbjct 351 ERKNLIYSLPTSGGKTLVAEILMLQELLCCRKD----VLMILPYVAIVQEKISGLSSFGI 406
Query 316 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQI---LVNNLKKGTIPSLSIFTLMIFD 372
G+ V +G+ P ++ E + I T + LVN+L + + L++ D
Sbjct 407 ELGFFVEEYAGSKGRFPPTKRR-EKKSLYIATIEKGHSLVNSLIE--TGRIDSLGLVVVD 463
Query 373 ECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCA 432
E H + + L + L S Q+IG++A+ L+ + L
Sbjct 464 ELH-MIGEGSRGATLEMTLAKILYTSKTT--QIIGMSAT------------LNNVEDLQK 508
Query 433 SLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKD 492
L A T + EL++ + K +V+S+ + + + +++L K
Sbjct 509 FLQAE-YYTSQFRPVELKEYL-KINDTIYEVDSKAENGMTFSRLLNYKYSDTLKKMDPDH 566
Query 493 LENL 496
L L
Sbjct 567 LVAL 570
>sp|A7I3X8|UVRB_CAMHC UvrABC system protein B OS=Campylobacter
hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A)
OX=360107 GN=uvrB PE=3 SV=1
Length=657
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/410 (16%), Positives = 132/410 (32%), Gaps = 46/410 (11%)
Query 447 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGT 506
+ L++ + P F E+R+ + K I +L E K +E Q +F
Sbjct 235 QNLKKFILYPTSQFIVGENRLKEAIKGIENELGERLE-FFNDNGKLVEAQRLKQRVDFDL 293
Query 507 QKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHA------RM 560
+ E + K + + + ++ + +II E R
Sbjct 294 EMLES--TGMCKGIENYARYLTGQNAGETPYSLFDYYEIKGMDYLVIIDESHVSLPQFRG 351
Query 561 KDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQE------LESVSRDPSNENPKLEDL 614
A D + + F+E + + + + D E K
Sbjct 352 MYAGDRSRKETLVEYGFRLPSALDNRPLMFDEFINKRAKFLFVSATPNDYELELSKDHVY 411
Query 615 CFILQEEYHLNPE----------------TITILFVKTRALVDALKNWIEGNPKLSFLKP 658
IL+ L+PE ++ R LV L + +L+
Sbjct 412 YQILRPTGLLDPEIVLKDSDNQVEILYDMAKEVIADNERVLVTVLTKKMAEELSKYYLEL 471
Query 659 GILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYV 718
G+ ++ + + ++ + +GD ++LI ++ EG+D+ + +L+ + +
Sbjct 472 GLKV----KYMHSDIDAIERNELIRGLR-TGDFDMLIGINLLREGLDLPEVSLIAIMDAD 526
Query 719 G-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKM-MNDSILRLQTW 771
+ +IQT GR R K + KE I + +++ D +
Sbjct 527 KEGFLRSRTSLIQTMGRAARNVNGKVVMFCKKITNSMKEAIEITQKRRKYQDEYNKTHNI 586
Query 772 DE---AVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALAC 818
+ E+ L + E R + + P ++ RK A
Sbjct 587 TPKSVSRNVEESLKLDDTEAIDRAMKAEKMPSSERAKIVKDLRKQMMEAA 636
>sp|B0TVM8|RAPA_SHEHH RNA polymerase-associated protein RapA OS=Shewanella
halifaxensis (strain HAW-EB4) OX=458817 GN=rapA
PE=3 SV=1
Length=968
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/480 (13%), Positives = 142/480 (30%), Gaps = 77/480 (16%)
Query 267 GCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISG 326
G GKT + LI L G+ +++ + R +
Sbjct 179 GLGKTIEAGLIIHQQL---LTGRAERILVIVP---------DTLRHQWLVEMLRRFNLRF 226
Query 327 ATAENVPVEQIVENNDIIILTPQI------LVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 380
+ + + +ND T Q+ L+ ++ + + LM+ DE H+
Sbjct 227 SVFDEDRCVEAYADNDNPFYTEQLVICSLDLLRKKRRLDQALDADWDLMVVDEAHHLE-- 284
Query 381 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIA 440
++ + Q + S +P V+ LTA+ D
Sbjct 285 --WSEEAPSRAYQIVEALSEEIPGVLLLTATP----------------------DQLGHQ 320
Query 441 TVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQ 500
+ L L+ P +F+ + +A S + + L+Q+
Sbjct 321 SHFARLRLLD-----PDRFYDYQAFLKEEDSYKDVATAADALASGESLSDESIAGLTQLL 375
Query 501 NREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARM 560
+ + ++ A ++ +DE + L + + A + R
Sbjct 376 SEK--DISASIALIQDDSADTDTRLQARDELLQDLLDRHGTGRVLYRNSRASVKGFPQRN 433
Query 561 KDAL------DYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNEN---PKL 611
Y+ + + + + Q E + +D + + K
Sbjct 434 LHVHPQKMPEQYVTAYRVSAMMNKHLDTNAKVRQVLSP-----EKIYQDFDSGSASWWKF 488
Query 612 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ L + N ++ +L+ + G T +
Sbjct 489 DPRVDWLIDFLKTNRSKKVLIIASQAETALSLEEALRTRE-----------GIQATVFHE 537
Query 672 GMTLPAQKCILDAF-KASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR 730
GM++ + F + +G LI + + EG + + ++L++ N + Q GR
Sbjct 538 GMSIIERDKAGAYFAQETGGAQALICSEIGSEGRNFQFASNLVLFDLPLNPDLLEQRIGR 597
>sp|B2TQS8|UVRB_CLOBB UvrABC system protein B OS=Clostridium botulinum
(strain Eklund 17B / Type B) OX=935198 GN=uvrB PE=3
SV=1
Length=657
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 66/389 (17%), Positives = 136/389 (35%), Gaps = 52/389 (13%)
Query 457 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFG----TQKYEQW 512
++ + I ++ + + +L + L + + N RE G + Y +
Sbjct 252 KETVERSLGEIENELENRLRELNSQEKLLEAQRLRQRTNFDIEMIREMGYCSGIENYSRI 311
Query 513 IVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDY---LKD 569
+ + D E + + + A+ + +R +DY L
Sbjct 312 LDGRAPGTPPKTLIDYFPEDFLLFIDESHVT--LPQVRAMYAGDRSRKNTLVDYGFRLPC 369
Query 570 FFSNVRAAGFDEIEQDLTQRF-----------EEKLQELESVSRDPSNENPKL--EDLCF 616
+ N R F+E E+ + Q E E V R +P++ + +
Sbjct 370 AYDN-RPLKFEEFEKKINQVMFVSATPAQYELEHSQSIAEQVIRPTGLLDPEIIIKPVKG 428
Query 617 ILQEEYHLNPET-----ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNT 671
+ + Y ET ++ T+ + + L ++ I G T ++
Sbjct 429 QIDDLYTEIQETISRGYRILITTLTKRMAEDLTKYM------------IELGVKATYMHS 476
Query 672 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQ 726
+ + I+ + G++++L+ ++ EG+DI + LV + + + +IQ
Sbjct 477 DIDTIERMKIIRDLRL-GEYDVLVGINLLREGLDIPEVALVAILDADKEGFLRSETSLIQ 535
Query 727 TRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEK-----MMNDSILRLQTWDEAVFREKI 780
T GR R SK + N K+ I+ + + N+ + RE I
Sbjct 536 TIGRAARNSESKVIMYADNITKSMKKAISETERRRKIQTEYNEEHGIIPQTINKEVRELI 595
Query 781 LHIQTHEKFIRDSQEKPKPVPDKENKKLL 809
+ E+ E K + KE KKL+
Sbjct 596 EATKVAEESTEYGMEVTKSLTKKEAKKLI 624
>sp|Q54Q94|DDX10_DICDI Probable ATP-dependent RNA helicase ddx10
OS=Dictyostelium discoideum OX=44689 GN=ddx10 PE=3 SV=1
Length=878
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (3%)
Query 257 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKV--VFFANQIPVYEQQKSVFSKYF 314
G++ + A TG GKT +L L + G+ + + + + Q V
Sbjct 178 GRDILGAAKTGSGKTLSFILPILETLWRNRWGRDDGIGAIVLSPTRELAIQIFDVLKAVG 237
Query 315 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDEC 374
+ H + I G ++I +I+I TP L+ ++ + S +++ DE
Sbjct 238 KYHTFSAGLIIGGRNVQQEKDKI-NAMNILIATPGRLLQHMDETYGFDCSNLKILVLDEA 296
Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/278 (17%), Positives = 83/278 (30%), Gaps = 36/278 (13%)
Query 493 LENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 552
L Q + +G I+ + +A + + + I + L L
Sbjct 270 PGRLLQHMDETYGFDCSNLKILVLDEADRILDLGFSKCLNSIVENLPRERQTLLFSATQT 329
Query 553 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLE 612
R L + + +V Q+LTQ ++ P KL
Sbjct 330 K---SIRDLARLSLQEPEYISVYEKDITTTPQNLTQ----------TLCVIP--LEMKLN 374
Query 613 DLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
L ++ + I+F + K + L P G +
Sbjct 375 MLFSFIKTHLT----SKIIVF------FASCKQVRFAHETFKLLNP----GTTLFPLHGK 420
Query 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
M + + + F L AT +A G+D VI + ++ I GR
Sbjct 421 MKQWTRLEVFEDF-CKKKAGTLFATDIAARGLDFPAVEWVIQVDCPDDIETYIHRVGRTA 479
Query 732 R--ARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILR 767
R A G +L + +N+ +++ M IL
Sbjct 480 RNDAPGQSITILLPSEK---DGMVNLMEKQKMKFEILE 514
>sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia
proteamaculans (strain 568) OX=399741 GN=rapA PE=3
SV=1
Length=968
Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 61/491 (12%), Positives = 153/491 (31%), Gaps = 59/491 (12%)
Query 247 QLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYE 304
QL +A + ++ G GKT + +I L G+ +V+ +
Sbjct 158 QLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQL---LAGRAERVLIVVPE----T 210
Query 305 QQKSVFSKYFERHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPS 362
Q + R + + ++ E ++I + + N + +
Sbjct 211 LQHQWLVEMMRRFNLYFSLFDDSRYSEAKLDSSNPFETEQLVICSLDFVRRNKLRLEELA 270
Query 363 LSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDE 422
+ + L++ DE H+ ++ + Q + + +P V+ LTA+ +
Sbjct 271 DAQWDLLVVDEAHHL----AWSEEAPSREYQVIEQLAEHIPGVLLLTATP---EQLGQQS 323
Query 423 ALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDT 482
+ L + + + V + Q+ +R V ++ L+
Sbjct 324 HFARLRLLDPN-----------RFHDYQDFVAE-QQKYRPVADAVT---------LLLSG 362
Query 483 ESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYT 542
E LA L L Q+ E + ++A D +
Sbjct 363 ERLADDKLNLLGELIDEQDIEPLLKAANSDSDNSEQARQELVTMLMDRHG----TSRVLF 418
Query 543 SHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKL--QELESV 600
+ R ++K L + + ++ +G ++ + R + L +++
Sbjct 419 RNTRNGVKGFPHRFLHQIKLPLP--TQYQTAIKVSGIMGAKKTVEARARDMLYPEQIYQE 476
Query 601 SRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGI 660
+ + L N ++ A L+ + ++ +
Sbjct 477 FEGENATWWNFDPRVEWLLNYLVANRHEKVLVICAHAATALQLEQVLREREA---IRAAV 533
Query 661 LTGRGKTNQNTGMTLPAQKCILDAFKASGD-HNILIATSVADEGIDIAQCNLVILYEYVG 719
+ G+++ + F + D +L+ + + EG + + +++++
Sbjct 534 F--------HEGLSIIERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFASHLVMFDLPF 585
Query 720 NVIKMIQTRGR 730
N + Q GR
Sbjct 586 NPDLLEQRIGR 596
>sp|Q83E18|UVRB_COXBU UvrABC system protein B OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) OX=227377 GN=uvrB
PE=3 SV=1
Length=672
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/247 (14%), Positives = 83/247 (34%), Gaps = 26/247 (11%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E ++ ++ D++
Sbjct 349 GMYRGDRARKETLVEYGFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQVV 408
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ L + E+E +++DL +++ N ++ T+ + + L
Sbjct 409 ELLVRPTGLIDPEIEVRPVAT-----QVDDLLSEIKKRAAQNE--RVLVTTLTKRMAEDL 461
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + ++ L ++ + + I+ + G ++L+ ++ EG
Sbjct 462 TEYFTEH----NVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREG 508
Query 704 IDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI + +LV + + + +IQT GR R K L K + +
Sbjct 509 LDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNVHGKAILYADRITDSMKRAMEEAE 568
Query 758 EKMMNDS 764
+ + S
Sbjct 569 RRRIAQS 575
>sp|A9NC09|UVRB_COXBR UvrABC system protein B OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) OX=360115 GN=uvrB PE=3
SV=1
Length=672
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/247 (14%), Positives = 83/247 (34%), Gaps = 26/247 (11%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E ++ ++ D++
Sbjct 349 GMYRGDRARKETLVEYGFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQVV 408
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ L + E+E +++DL +++ N ++ T+ + + L
Sbjct 409 ELLVRPTGLIDPEIEVRPVAT-----QVDDLLSEIKKRAAQNE--RVLVTTLTKRMAEDL 461
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + ++ L ++ + + I+ + G ++L+ ++ EG
Sbjct 462 TEYFTEH----NVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREG 508
Query 704 IDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI + +LV + + + +IQT GR R K L K + +
Sbjct 509 LDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNVHGKAILYADRITDSMKRAMEEAE 568
Query 758 EKMMNDS 764
+ + S
Sbjct 569 RRRIAQS 575
>sp|B6J1E8|UVRB_COXB2 UvrABC system protein B OS=Coxiella burnetii
(strain CbuG_Q212) OX=434923 GN=uvrB PE=3 SV=1
Length=672
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/247 (14%), Positives = 83/247 (34%), Gaps = 26/247 (11%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E ++ ++ D++
Sbjct 349 GMYRGDRARKETLVEYGFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQVV 408
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ L + E+E +++DL +++ N ++ T+ + + L
Sbjct 409 ELLVRPTGLIDPEIEVRPVAT-----QVDDLLSEIKKRAAQNE--RVLVTTLTKRMAEDL 461
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + ++ L ++ + + I+ + G ++L+ ++ EG
Sbjct 462 TEYFTEH----NVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREG 508
Query 704 IDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI + +LV + + + +IQT GR R K L K + +
Sbjct 509 LDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNVHGKAILYADRITDSMKRAMEEAE 568
Query 758 EKMMNDS 764
+ + S
Sbjct 569 RRRIAQS 575
>sp|A9KCU2|UVRB_COXBN UvrABC system protein B OS=Coxiella burnetii
(strain Dugway 5J108-111) OX=434922 GN=uvrB PE=3 SV=1
Length=672
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/247 (14%), Positives = 83/247 (34%), Gaps = 26/247 (11%)
Query 524 QMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIE 583
M D + + + N L E ++ ++ D++
Sbjct 349 GMYRGDRARKETLVEYGFRLPSALDNRPLRFDEFEKLAPQTIFISATPGPYEEKQSDQVV 408
Query 584 QDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 643
+ L + E+E +++DL +++ N ++ T+ + + L
Sbjct 409 ELLVRPTGLIDPEIEVRPVAT-----QVDDLLSEIKKRAAQNE--RVLVTTLTKRMAEDL 461
Query 644 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEG 703
+ + ++ L ++ + + I+ + G ++L+ ++ EG
Sbjct 462 TEYFTEH----NVRVRYL--------HSDIDTVERVEIIRDLRL-GVFDVLVGINLLREG 508
Query 704 IDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYK 757
+DI + +LV + + + +IQT GR R K L K + +
Sbjct 509 LDIPEVSLVAILDADKEGFLRSERSLIQTMGRAARNVHGKAILYADRITDSMKRAMEEAE 568
Query 758 EKMMNDS 764
+ + S
Sbjct 569 RRRIAQS 575
>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
OX=71421 GN=recG PE=3 SV=1
Length=693
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/255 (15%), Positives = 81/255 (32%), Gaps = 29/255 (11%)
Query 261 IICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYR 320
++ G GK + +V A + EQ + F ++F+ G
Sbjct 293 LVQGDVGSGK-----TLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIE 347
Query 321 VTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHN 376
V ++G ++ + +++ T + ++ S L+I DE H
Sbjct 348 VGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVE------FSDLALVIIDEQHR 401
Query 377 TSKQHPYNMIMFN-------YLDQKLGGSSGPLPQVIGLT--ASVGVGDAKNTDEALDYI 427
H +M + +L ++ P+P+ + +T A + I
Sbjct 402 -FGVH--QRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPI 458
Query 428 CKLCASLD--ASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 485
+ S + A ++ VK+ ++ Y + E + + I L + L
Sbjct 459 TTVVVSEERRAEIVMRVKNACVNEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPML 518
Query 486 AKRICKDLENLSQIQ 500
+ + Q
Sbjct 519 NIGLVHGRMKPQEKQ 533
Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query 646 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGID 705
W + L L G++ GR M ++ ++ FK + + ++L+AT+V + G+D
Sbjct 508 WEDLTKALPMLNIGLVHGR--------MKPQEKQDVMMRFK-NAELDLLVATTVIEVGVD 558
Query 706 IAQCNLVILYEYVG-NVIKMIQTRGRGRA--RGSKCFLL 741
+ +L+I+ + ++ Q RGR S C L+
Sbjct 559 VPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLM 597
>sp|Q65191|VF509_ASFB7 Putative ATP-dependent RNA helicase QP509L
OS=African swine fever virus (strain Badajoz 1971 Vero-adapted)
OX=10498 GN=Ba71V-123 PE=2 SV=1
Length=509
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/284 (16%), Positives = 94/284 (33%), Gaps = 46/284 (16%)
Query 245 NYQLELALPAMKGKNTIIC--------APTGCGKTFVSLLICEHHLKKFPQGQKGKVVFF 296
NYQ E+ K ++ TG GKT +++ I + L +
Sbjct 99 NYQQEMVD---KIHKKLLSPYGRFYLHLNTGLGKTRIAISIIQKLLYP--------TLVI 147
Query 297 ANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLK 356
+ Q + RV + A + + + D+I+ ++N L+
Sbjct 148 VPTKAIQIQWIDELTLLLPH--LRVAAYNNAACKKK--DMTSKEYDVIVG----IINTLR 199
Query 357 KGTIPSLSIFTLMIFDECH--NTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGV 414
K F L++ DE H ++ + + + +L +++GL+A+
Sbjct 200 KKPEQFFEPFGLVVLDEAHELHSPENY------KIFWKIQLS-------RILGLSATPLD 246
Query 415 GDAKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 474
+ ++ + + S T + E+E + P + I
Sbjct 247 RPDGMDKIIIHHLGQPQRT--VSPTTTFSGYVREIEYQGH-PDFVSPVCINEKVSAIATI 303
Query 475 IAQLMRDTE-SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQ 517
L + L K L +L + ++GT + I+ V+
Sbjct 304 DKLLQDPSRIQLVVNEAKRLYSLHTAEPHKWGTDEPYGIIIFVE 347
>sp|Q6FPT7|DBP4_CANGA ATP-dependent RNA helicase DBP4 OS=Candida
glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC
0622 / NRRL Y-65 / CBS 138) OX=284593 GN=DBP4 PE=3 SV=1
Length=765
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query 605 SNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGR 664
++ KL+ L ++ T I+F + K ++PGI
Sbjct 269 ADLADKLDVLYSFIKSHLK----TKMIVF------FSSSKQVHFVYETFRKMQPGISLLH 318
Query 665 GKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKM 724
Q A+ LD F + L AT V GID + VI + +V
Sbjct 319 LHGRQ----KQRARTETLDKFFRAQQV-CLFATDVVARGIDFPAVDWVIQVDCPEDVDTY 373
Query 725 IQTRGRG---RARGSKCFLLTSNAG 746
I GR +G +LT
Sbjct 374 IHRVGRAARYGKKGRSLIILTPQEE 398
Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/189 (16%), Positives = 68/189 (36%), Gaps = 5/189 (3%)
Query 193 KDVETEDLEDKMETSDIQIFYQEDPECQNLSENSCP--PSEVSDTNLYSPFKPRNYQLEL 250
+ E + E+ ++ + +I + + + P S + N S K + Q +
Sbjct 12 RKQERQKEEEYIKELEQRIQDYDVKNNKAVFFKDLPISKSTLKGLNEASFIKMTDIQRDS 71
Query 251 ALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQG--QKGKVVFFANQIPVYEQQKS 308
+ +++G + A TG GKT L+ L + + + + Q
Sbjct 72 IVTSLQGHDVFGTAKTGSGKTLAFLVPVLEKLYRERWTEFDGLGALIISPTRELAMQIYE 131
Query 309 VFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 368
V K H G+ + + + +I+I TP ++ ++ + + S +
Sbjct 132 VLVKI-GSHTQFSAGLVIGGKDVNFELERIAKINILIGTPGRILQHMDQAVGLNTSNLQM 190
Query 369 MIFDECHNT 377
++ DE
Sbjct 191 LVLDEADRC 199
>sp|B2VBW9|UVRB_ERWT9 UvrABC system protein B OS=Erwinia tasmaniensis
(strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357
/ Et1/99) OX=465817 GN=uvrB PE=3 SV=1
Length=674
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/180 (16%), Positives = 66/180 (37%), Gaps = 26/180 (14%)
Query 629 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 688
++ V T+ + + L ++ + + + L ++ + + I+ +
Sbjct 448 RVLVTVLTKRMAEDLTEYLTEHGE----RVRYL--------HSDIDTVERVEIIRDLRL- 494
Query 689 GDHNILIATSVADEGIDIAQCNLVILYEYVG-----NVIKMIQTRGR-GRARGSKCFLLT 742
G ++L+ ++ EG+D+ + +LV + + + +IQT GR R K L
Sbjct 495 GKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAIL-- 552
Query 743 SNAGVIEKEQINMYKEKMMNDSILRLQTWDEAV----FREKILHIQTHEKFIRDSQEKPK 798
I E +L + + +KI I + + ++ KP+
Sbjct 553 -YGDKITPSMARAIGETERRREKQQLHNEEHGIVPQGLNKKISDILELGQGLAKNKAKPR 611
>sp|O37319|NTP1_HAEPV Nucleoside triphosphatase I OS=Heliothis
armigera entomopoxvirus OX=10290 GN=NPH1 PE=3 SV=1
Length=646
Score = 61.3 bits (147), Expect = 3e-08, Method: Composition-based stats.
Identities = 82/634 (13%), Positives = 202/634 (32%), Gaps = 101/634 (16%)
Query 222 LSENSCPPSEVSDTNLYSPFKPRNYQLEL--ALPAMKGKN-TIICAPTGCGKTFVSLLIC 278
L + + P +++ ++YQ + +K N ++ TG GKT ++ I
Sbjct 16 LDKTAHLPETITNNVSNVEITLKDYQYFVSRVFIGLKNLNSMLLFWDTGMGKTLTAVYII 75
Query 279 EHHLKKFPQGQKGKVVFFANQIPVY----EQQKSVFSKYFERHGYRVTGISGATAENVPV 334
+H + FP+ ++ + +Y F+ + V S ++ +
Sbjct 76 KHIKELFPRW----IILIFIKKSLYIDPWLNTIRAFAPDISNNIIFVYYDSSSSLDK--- 128
Query 335 EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECH----NTSKQHPYNMIMFNY 390
+ + + N+L + L+I DE H + K+
Sbjct 129 ---------FVNIYRSIENSL-----NKKNRL-LIIIDEVHKLISRSVKKDNSERNFTPT 173
Query 391 LDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYIC-KLCASLDASVIATVKHNLEEL 449
+ + ++ +++ ++A+ + + + + + + +I N +E+
Sbjct 174 YKKLIKLANYEGNKILCMSATPIYNNIDEFNNLIGLLRPNVMTFKEEYIINGKLINFKEI 233
Query 450 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 509
+ + R +E+ + Y+ ++ + ++ L +
Sbjct 234 RDTLLGLCSYKRLIEADSFTETNYVEGYAKKNVIYHNIIMSEEQSKLFNL---------- 283
Query 510 EQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKD 569
+K ++ R+ + Y ++ + + ++ + K A +
Sbjct 284 ------AEKYDYKTELGGLKTMRRLVSSFAFYDLKIKGDLNNIEYNDMIKRKLA--EFSE 335
Query 570 FFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 629
F + + + + L E + + K + C I+ N
Sbjct 336 FTKTINFSNNFIEKFKRDDLKNDILLEDINNYNILYQYSCKYIEACRIIL-----NSRGK 390
Query 630 TILF---VKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 686
+LF V + LK + + + KT + + + + ++
Sbjct 391 VLLFEPLVNFEGIAS-LKYYF------NCFNITYVEYSSKTLKTRDIEISE----YNNYE 439
Query 687 ASGDHNILIA--TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSK------- 737
+ NI + + EGI N +I+ + N ++ Q GR S
Sbjct 440 NNDGKNIKVCIFSYAGSEGISFKCVNDIIILDMPWNESELKQIMGRSIRLNSHNDLPLEN 499
Query 738 -------CFLLTSNAGVIEKEQINMYKEK-------------MMNDSILRLQTWDEAVFR 777
T+N ++KE +++ K+K + +SI + + E V
Sbjct 500 RYVNVHFIISYTNNRKSVDKEILDIIKDKQSKINVVFDLLKSISIESIHNIHKYIEPVES 559
Query 778 EKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCR 811
E I + +R+ V K + C+
Sbjct 560 ETIFD-TIRKTRMREMNISNVIVKIKLYPIMYCK 592
>sp|Q4IJ56|DBP9_GIBZE ATP-dependent RNA helicase DBP9 OS=Gibberella
zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /
NRRL 31084 / PH-1) OX=229533 GN=DBP9 PE=3 SV=1
Length=615
Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/225 (16%), Positives = 76/225 (34%), Gaps = 21/225 (9%)
Query 195 VETEDLEDKMETSDIQIFYQEDPECQNLSENSCPPSEVSDTNLYSPFKPRNYQLELALPA 254
E D + +E+ +L + ++ P Q + A
Sbjct 18 AENPASTDVEKAIKPAQKQEEETSFVDLGLDPRLLQAIAQQKFAKPTLV---QRKAIPLA 74
Query 255 MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK---GKVVFFANQIPVYEQQKSVFS 311
+ G++ + A G GKT +L + K + + +Q
Sbjct 75 LNGQDVLAKADCGSGKTAAYVLPLLSSILKRKATDSTAFTTALILVPTRELADQVSKAIE 134
Query 312 KYFERHGYRVTGISGATAENVPVEQIVENN--DIIILTPQILVNNLKKGTIPSLSIFTLM 369
++ ++ + V++ + +N DI+I TP N+ + S+ T +
Sbjct 135 QFASFCAKDISTAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSAL-SIDKLTHL 193
Query 370 IFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP---QVIGLTAS 411
I DE ++++ + L S +P QV+ ++A+
Sbjct 194 ILDEA---------DLVLSYGYSEDLENLSRSVPKGVQVMMMSAT 229
Score = 40.5 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 31/98 (32%), Gaps = 13/98 (13%)
Query 701 DEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKM 760
G+D + + VI ++ GR T+ AG + + +
Sbjct 399 SRGVDFKKVSAVINFDLPTTASAYTHRIGR-----------TARAGQTGMALSFVVPKDL 447
Query 761 MNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPK 798
+ E EKI+ ++ RD + KP
Sbjct 448 YRKHMPTSTPACEN--DEKIMARIIRQQAKRDKEVKPY 483
Lambda K H a alpha
0.318 0.125 0.331 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0383 0.140 1.90 42.6 43.6
Effective search space used: 107032214436
Database: uniprot_sprot.fasta
Posted date: Apr 3, 2024 12:05 PM
Number of letters in database: 206,678,396
Number of sequences in database: 571,282
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40