Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
3177281 | 274 | 12 | P59632(AP3A_SARS) | RecName: Full=ORF3a protein;AltName: Full=Accessory protein 3a;AltName: Full=Protein 3a;AltName: Full=Protein U274;AltName: Full=Protein X1; |
QUERYSEQ |
MDLFMRFFTLGSITAQPVKIDNASPASTVHATATIPLQASLPFGWLVIGVAFLAVFQSATKIIALNKRWQLALYKGFQFICNLLLLFVTIYSHLLLVAAGMEAQFLYLYALIYFLQCINACRIIMRCWLCWKCKSKNPLLYDANYFVCWH THNYDYCIPYNSVTDTIVVTEGDGISTPKLKEDYQIGGYSEDRHSGVKDYVVVHGYFTEVYYQLESTQITTDTGIENATFFIFNKLVKDPPNVQIHTIDGSSGVANPAMDPIYDEPTTTTSVPL |
274 | region | name | description |
1-274 | CHAIN | /note="ORF3a protein" /id="PRO_0000106131" | |
1-34 | TOPO_DOM | /note="Extracellular" | |
35-55 | TRANSMEM | /note="Helical" | |
56-78 | TOPO_DOM | /note="Cytoplasmic" | |
79-99 | TRANSMEM | /note="Helical" | |
100-104 | TOPO_DOM | /note="Extracellular" | |
105-125 | TRANSMEM | /note="Helical" | |
126-274 | TOPO_DOM | /note="Cytoplasmic" | |
33-141 | DOMAIN | /note="CoV 3a-like viroporin TM" | |
145-237 | DOMAIN | /note="CoV 3a-like viroporin CD" | |
1-274 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
274 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
8eqs | B | 100.0 | AP3A_SARS ORF3a protein | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
274 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7kjr[4] | C | APOA1_HUMAN Apolipoprotein A-I[31 aa] | A | 83.3 /76.6 |
6 /6 |
AP3A_SARS2 ORF3a protein | |
7kjr[4] | D | APOA1_HUMAN Apolipoprotein A-I[31 aa] | A | 83.3 /76.6 |
6 /6 |
AP3A_SARS2 ORF3a protein | |
8equ[2] | C | SAP_HUMAN Saposin-A[80 aa] | A | 85.7 /76.4 |
7 /7 |
AP3A_SARS2 ORF3a protein | |
8equ[2] | F | SAP_HUMAN Saposin-A[80 aa] | A | 0.0 /76.4 |
1 /1 |
AP3A_SARS2 ORF3a protein | |
8equ[2] | D | Saposin A, polyalanine model[79 aa] | A | 100.0 /76.4 |
1 /1 |
AP3A_SARS2 ORF3a protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
274 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7kjr[10] | E |
PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a.. |
A | 75.0 /76.6 |
4 /4 |
AP3A_SARS2 ORF3a protein | |
7kjr[8] | F |
PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[23 a.. |
A | 75.0 /76.6 |
4 /4 |
AP3A_SARS2 ORF3a protein | |
8eqj[6] | D |
PEE
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine[22 a.. |
A | 85.7 /76.4 |
7 /7 |
AP3A_SARS2 ORF3a protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
HOMO | |||||||
274 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
8eqs[2] | B | AP3A_SARS ORF3a protein[192 aa] | A | 100.0 /100.0 |
48 /48 |
AP3A_SARS ORF3a protein | |
6xdc[10] | B | AP3A_SARS2 ORF3a protein[193 aa] | A | 88.1 /76.6 |
42 /42 |
AP3A_SARS2 ORF3a protein | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |