Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
4088155 | 180 | 34 | YP_009725297.1() | |
QUERYSEQ |
MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELG TDPYEDFQENWNTKHSSGVTRELMRELNGG |
180 | region | name | description |
1-180 | DISORDER | predicted by DISOPRED |
MONOMER | |||||||
180 | |||||||
pdb_id | a1 | identity[%]2 | description | ||||
8aou | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rfd | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rfc | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf8 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rff | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf5 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf4 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf3 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf2 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8a55 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8a4y | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8crm | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8rf6 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8ays | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
7k7p | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8crk | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8az8 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
8crf | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
7eq4 | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
7k3n | A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
7jqc | AA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
7jqb | AA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
6zp4 | BB | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zmi | HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zmo | JC | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zlw | JA | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zok | U | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zoj | IA | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zon | VA | 100.0 | R1AB_SARS2 Host translation inhibitor Nsp1 | ||||
7k5i | JA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | ||||
6zme | HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zn5 | IA | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zmt | HA | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
6zm7 | HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | ||||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
HETERO | |||||||
180 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6zlw | C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
6zm7 | SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zme | SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zmi | SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zmo | SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | JC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zmt | C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zn5 | C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zoj | D | RS2_HUMAN 40S ribosomal protein S2[218 aa] | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zok | D | RS2_HUMAN 40S ribosomal protein S2[218 aa] | U | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zon | C | RS2_HUMAN 40S ribosomal protein S2[216 aa] | VA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor Nsp1 | |
6zp4 | C | RS2_HUMAN 40S ribosomal protein S2[216 aa] | BB | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
7jqb | F | uS5[221 aa] | AA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7jqc | F | uS5[221 aa] | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7k5i | S | RS2_HUMAN 40S ribosomal protein S2[218 aa] | JA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
6zlw | DA | RS30_HUMAN 40S ribosomal protein S30[52 aa] | JA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 1 | |
6zm7 | CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zme | CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zmi | CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 1 | |
6zmo | CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | JC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zmt | CA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | HA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zn5 | DA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | IA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 1 | |
6zoj | FA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | IA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zok | T | RS30_HUMAN 40S ribosomal protein S30[56 aa] | U | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zon | S | RS30_HUMAN 40S ribosomal protein S30[44 aa] | VA | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Host translation inhibitor Nsp1 | |
7k5i | HA | RS30_HUMAN 40S ribosomal protein S30[50 aa] | JA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
6zlw | E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | JA | 100.0 /100.0 |
10 /10 |
R1AB_SARS2 Non-structural protein 1 | |
6zm7 | ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 | |
6zme | ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 1 | |
6zmi | ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 | |
6zmo | ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | JC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
6zmt | E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zn5 | E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | IA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 | |
6zoj | E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | IA | 100.0 /100.0 |
10 /10 |
R1AB_SARS2 Non-structural protein 1 | |
6zon | W | RS3_HUMAN 40S ribosomal protein S3[224 aa] | VA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor Nsp1 | |
6zp4 | T | RS3_HUMAN 40S ribosomal protein S3[224 aa] | BB | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 | |
7jqb | H | G1TNM3_RABIT Ribosomal protein S3[228 aa] | AA | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7jqc | H | G1TNM3_RABIT Ribosomal protein S3[228 aa] | AA | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7k5i | D | RS3_HUMAN 40S ribosomal protein S3[225 aa] | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7jqb | I | G1T8A2_RABIT eS30[57 aa] | AA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7jqc | I | G1T8A2_RABIT eS30[57 aa] | AA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
NUCLEOTIDE | |||||||
180 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
6zlw | IA | 18S ribosomal RNA | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
7k5i | B | 40S ribosomal rRNA18S | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
6zm7 | WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 | |
6zme | WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
6zmi | WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
6zmo | WA | 18S ribosomal RNA | JC | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zmt | GA | 18S ribosomal RNA | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zn5 | HA | 18S ribosomal RNA | IA | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 | |
6zoj | A | 18S ribosomal RNA | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zok | A | 18S ribosomal RNA | U | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 | |
6zon | T | 18S ribosomal RNA | VA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor Nsp1 | |
6zp4 | R | 18S ribosomal RNA | BB | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 | |
7jqb | A | rRNA | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
7jqc | A | rRNA | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
COMPOUND | |||||||
180 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
8a4y | B |
QO6
N-(2,3-dihydro-1H-inden-5-yl)acetamide[13 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8ays | B |
92G
4-(2-amino-1,3-thiazol-4-yl)phenol[13 atoms] |
A | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8az8 | B |
OEI
2-[(phenylmethyl)amino]ethanol[11 atoms] |
A | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8crf | B |
NT9
~{N}-methyl-1-(4-thiophen-2-ylphenyl)methanamine[1.. |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8crk | B |
OG3
(1~{R})-1-(4-chlorophenyl)ethanamine[10 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8crm | B |
OF6
1-[2-(3-chlorophenyl)-1,3-thiazol-4-yl]-~{N}-methy.. |
A | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf2 | B |
A1H0G
1-benzothiophen-5-amine[10 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf3 | B |
A1H0L
2-(1-benzothiophen-3-yl)ethanoic acid[13 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf4 | B |
EQT
4-chloranyl-1~{H}-indazol-3-amine[11 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf5 | B |
FBB
6-fluoro-1,3-benzothiazol-2-amine[11 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf6 | B |
A1H0K
6-iodanyl-2,3-dihydro-1,3-benzothiazol-2-amine[11 .. |
A | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rf8 | B |
A1H0M
6-bromanyl-1,3-benzothiazol-2-amine[11 atoms] |
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rfc | B |
A1H0N
(1~{R})-1-(4-bromophenyl)ethanamine[10 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rfd | B |
A1H0J
(1~{R})-1-(4-iodophenyl)ethanamine[10 atoms] |
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
8rff | B |
ABV
1,3-benzothiazol-2-amine[10 atoms] |
A | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
METAL | |||||||
180 | pdb_id | contact mol | homologue | ||||
a3 | description | a4 | identity[%]5 | Ncon6 | description | ||
7k5i | KA |
MG
MAGNESIUM ION[1 atoms] |
JA | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Host translation inhibitor nsp1 | |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |