PSIBLAST 2.11.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen F.
Altschul, John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005)
"Protein database searches using compositionally adjusted
substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: uniprot_sprot.fasta
           570,830 sequences; 206,533,160 total letters

Results from round 1


Query= YP_009725297.1 leader protein [Severe acute respiratory syndrome
coronavirus 2]

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp...  386     2e-123
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  386     2e-123
sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi...  328     2e-103
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  328     2e-103
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H...  326     1e-102
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  326     1e-102
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R...  322     3e-101
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  322     3e-101
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2...  320     1e-100
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  320     1e-100
sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H...  36.2    0.14  
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  36.2    0.14  
sp|Q06R82|RK32_JASNU Large ribosomal subunit protein bL32c OS=Jas...  30.4    2.1   
sp|A0A125SXN2|LCD_LYCCL Alpha-onocerin synthase LCD OS=Lycopodium...  30.8    7.1   


>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405

 Score = 386 bits (992),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV
Sbjct  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK
Sbjct  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 386 bits (992),  Expect = 2e-123, Method: Composition-based stats.
 Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV
Sbjct  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK
Sbjct  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180


>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382

 Score = 328 bits (842),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 328 bits (842),  Expect = 2e-103, Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus 
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376

 Score = 326 bits (836),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 151/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 326 bits (836),  Expect = 1e-102, Method: Composition-based stats.
 Identities = 151/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380

 Score = 322 bits (826),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 162/180 (90%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV
Sbjct  1    MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQ EQPYVFIKRSDA+   HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG  180


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 322 bits (826),  Expect = 3e-101, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 162/180 (90%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV
Sbjct  1    MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQ EQPYVFIKRSDA+   HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG  180


>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388

 Score = 320 bits (821),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 163/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESL  G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA+   HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR 
Sbjct  61   LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH  GV REL+RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG  180


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 320 bits (821),  Expect = 1e-100, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 163/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESL  G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA+   HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR 
Sbjct  61   LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH  GV REL+RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG  180


>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus 
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248

 Score = 36.2 bits (82),  Expect = 0.14, Method: Composition-based stats.
 Identities = 44/144 (31%), Positives = 63/144 (44%), Gaps = 20/144 (14%)

Query  28   VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV  84
            V G+   +EE L  A+Q L+     LV V   +   P +    V I  S       G   
Sbjct  29   VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP  88

Query  85   MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA  138
            + EL  + +G++YGR G T GVL+P       +G+I +  RK         G G +S   
Sbjct  89   IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD  139

Query  139  DLKSFDLGDELGTD--PYEDFQEN  160
             L  +D   + G D  PY DF +N
Sbjct  140  VLPLWDGFSDPGPDVGPYLDFPDN  163


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 36.2 bits (82),  Expect = 0.14, Method: Composition-based stats.
 Identities = 44/144 (31%), Positives = 63/144 (44%), Gaps = 20/144 (14%)

Query  28   VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHG-HV  84
            V G+   +EE L  A+Q L+     LV V   +   P +    V I  S       G   
Sbjct  29   VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP  88

Query  85   MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA  138
            + EL  + +G++YGR G T GVL+P       +G+I +  RK         G G +S   
Sbjct  89   IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD  139

Query  139  DLKSFDLGDELGTD--PYEDFQEN  160
             L  +D   + G D  PY DF +N
Sbjct  140  VLPLWDGFSDPGPDVGPYLDFPDN  163


>sp|Q06R82|RK32_JASNU Large ribosomal subunit protein bL32c OS=Jasminum 
nudiflorum OX=126431 GN=rpl32 PE=3 SV=1
Length=73

 Score = 30.4 bits (67),  Expect = 2.1, Method: Compositional matrix adjust.
 Identities = 17/38 (45%), Positives = 20/38 (53%), Gaps = 3/38 (8%)

Query  120  KVLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDF  157
            K  +RKN  KG G   YG  LK+F LG  L T   + F
Sbjct  12   KKRIRKNSWKGKG---YGTALKAFSLGKSLSTGNSKSF  46


>sp|A0A125SXN2|LCD_LYCCL Alpha-onocerin synthase LCD OS=Lycopodium 
clavatum OX=3252 GN=LCD PE=1 SV=1
Length=766

 Score = 30.8 bits (68),  Expect = 7.1, Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (42%), Gaps = 15/74 (20%)

Query  107  LVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSF------DLGDELGTDPYEDFQEN  160
            L+ H G +PV YR + L  +       + Y   L         DL  EL T PYED   +
Sbjct  253  LIAHPGRLPVLYRFIFLPMS-------YIYARRLSHHLTKIIEDLRKELYTIPYEDI--D  303

Query  161  WNTKHSSGVTRELM  174
            WN     G   E++
Sbjct  304  WNHARKLGAKEEIV  317



Lambda      K        H        a         alpha
   0.315    0.137    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 9878801070
Results from round 2


Query= YP_009725297.1 leader protein [Severe acute respiratory syndrome
coronavirus 2]

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value
Sequences used in model and found again:

sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respi...  373     9e-119
sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute res...  373     9e-119
sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus R...  372     1e-118
sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus...  372     1e-118
sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus H...  370     5e-118
sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus...  370     6e-118
sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 2...  368     2e-117
sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus...  368     2e-117
sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute resp...  361     7e-115
sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute re...  361     7e-115

Sequences not found previously or not previously below threshold:

sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus H...  41.9    0.002
sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus...  41.9    0.002
sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens OX=9606 GN=CUBN PE=1...  36.9    0.080
sp|Q9TU53|CUBN_CANLF Cubilin OS=Canis lupus familiaris OX=9615 GN...  34.6    0.56 
sp|F1RWC3|CUBN_PIG Cubilin OS=Sus scrofa OX=9823 GN=CUBN PE=1 SV=3    33.0    1.4  
sp|O07685|BGAM_LACAC Beta-galactosidase small subunit OS=Lactobac...  32.6    1.8  
sp|Q8ST44|Y7I5_ENCCU UPF0329 protein ECU07_1850/ECU10_0050 OS=Enc...  31.1    5.7  
sp|Q8STZ1|YBK9_ENCCU UPF0329 protein ECU11_2090 OS=Encephalitozoo...  31.1    6.3  
sp|Q06530|DHSU_ALLVD Sulfide dehydrogenase [flavocytochrome c] fl...  30.7    7.2  


>sp|P0C6U8|R1A_SARS Replicase polyprotein 1a OS=Severe acute respiratory 
syndrome coronavirus OX=694009 GN=1a PE=1 SV=1
Length=4382

 Score = 373 bits (957),  Expect = 9e-119, Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6X7|R1AB_SARS Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus OX=694009 GN=rep PE=1 SV=1
Length=7073

 Score = 373 bits (957),  Expect = 9e-119, Method: Composition-based stats.
 Identities = 152/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAE++GIQYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6T7|R1A_BCRP3 Replicase polyprotein 1a OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=1a PE=3 SV=1
Length=4380

 Score = 372 bits (955),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 162/180 (90%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV
Sbjct  1    MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQ EQPYVFIKRSDA+   HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG  180


>sp|P0C6W6|R1AB_BCRP3 Replicase polyprotein 1ab OS=Bat coronavirus 
Rp3/2004 OX=349344 GN=rep PE=3 SV=1
Length=7071

 Score = 372 bits (955),  Expect = 1e-118, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 162/180 (90%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK GTCG+VE+EKGV
Sbjct  1    MESLVLGINEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKSGTCGIVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQ EQPYVFIKRSDA+   HGH + ELVAEL+G+QYGRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQPEQPYVFIKRSDAQGTDHGHRVRELVAELDGVQYGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SGV REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGVLRELTRELNGG  180


>sp|P0C6F8|R1A_BCHK3 Replicase polyprotein 1a OS=Bat coronavirus 
HKU3 OX=442736 GN=1a PE=3 SV=1
Length=4376

 Score = 370 bits (951),  Expect = 5e-118, Method: Composition-based stats.
 Identities = 151/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6W2|R1AB_BCHK3 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU3 OX=442736 GN=rep PE=3 SV=1
Length=7067

 Score = 370 bits (951),  Expect = 6e-118, Method: Composition-based stats.
 Identities = 151/180 (84%), Positives = 164/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLV G NEKTHVQLSLPVLQVRDVLVRGFGDSVEE LSEAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLVLGVNEKTHVQLSLPVLQVRDVLVRGFGDSVEEALSEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA +  HGH +VELVAEL+GIQ+GRSG TLGVLVPHVGE P+AYR 
Sbjct  61   LPQLEQPYVFIKRSDALSTNHGHKVVELVAELDGIQFGRSGITLGVLVPHVGETPIAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHS+G DLKS+DLGDELGTDP ED+++NWNTKH SG  REL RELNGG
Sbjct  121  VLLRKNGNKGAGGHSFGIDLKSYDLGDELGTDPIEDYEQNWNTKHGSGALRELTRELNGG  180


>sp|P0C6F5|R1A_BC279 Replicase polyprotein 1a OS=Bat coronavirus 
279/2005 OX=389167 GN=1a PE=3 SV=1
Length=4388

 Score = 368 bits (946),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 163/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESL  G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA+   HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR 
Sbjct  61   LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH  GV REL+RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG  180


>sp|P0C6V9|R1AB_BC279 Replicase polyprotein 1ab OS=Bat coronavirus 
279/2005 OX=389167 GN=rep PE=3 SV=1
Length=7079

 Score = 368 bits (946),  Expect = 2e-117, Method: Composition-based stats.
 Identities = 149/180 (83%), Positives = 163/180 (91%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESL  G +EKTHVQLSLPVLQVRDVLVRGFGDSVEE L+EAR+HLK+GTCGLVE+EKGV
Sbjct  1    MESLALGVSEKTHVQLSLPVLQVRDVLVRGFGDSVEEALAEAREHLKNGTCGLVELEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDA+   HG+ +VELVAEL+GIQYGRSG TLGVLVPHVGE PVAYR 
Sbjct  61   LPQLEQPYVFIKRSDAQGTNHGYKVVELVAELDGIQYGRSGTTLGVLVPHVGETPVAYRN  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYG DLKS+DLG ELGTDP ED+++NWNTKH  GV REL+RELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGIDLKSYDLGVELGTDPIEDYEQNWNTKHGGGVLRELIRELNGG  180


>sp|P0DTC1|R1A_SARS2 Replicase polyprotein 1a OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 PE=1 SV=1
Length=4405

 Score = 361 bits (928),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV
Sbjct  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK
Sbjct  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180


>sp|P0DTD1|R1AB_SARS2 Replicase polyprotein 1ab OS=Severe acute 
respiratory syndrome coronavirus 2 OX=2697049 GN=rep PE=1 
SV=1
Length=7096

 Score = 361 bits (928),  Expect = 7e-115, Method: Composition-based stats.
 Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%)

Query  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60
            MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV
Sbjct  1    MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV  60

Query  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120
            LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK
Sbjct  61   LPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRK  120

Query  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180
            VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG
Sbjct  121  VLLRKNGNKGAGGHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVTRELMRELNGG  180


>sp|P0C6T6|R1A_BCHK9 Replicase polyprotein 1a OS=Bat coronavirus 
HKU9 OX=694006 GN=1a PE=3 SV=1
Length=4248

 Score = 41.9 bits (97),  Expect = 0.002, Method: Composition-based stats.
 Identities = 44/144 (31%), Positives = 63/144 (44%), Gaps = 20/144 (14%)

Query  28   VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHGHV-  84
            V G+   +EE L  A+Q L+     LV V   +   P +    V I  S       G   
Sbjct  29   VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP  88

Query  85   MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA  138
            + EL  + +G++YGR G T GVL+P       +G+I +  RK         G G +S   
Sbjct  89   IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD  139

Query  139  DLKSFDLGDELGTD--PYEDFQEN  160
             L  +D   + G D  PY DF +N
Sbjct  140  VLPLWDGFSDPGPDVGPYLDFPDN  163


>sp|P0C6W5|R1AB_BCHK9 Replicase polyprotein 1ab OS=Bat coronavirus 
HKU9 OX=694006 GN=rep PE=1 SV=1
Length=6930

 Score = 41.9 bits (97),  Expect = 0.002, Method: Composition-based stats.
 Identities = 44/144 (31%), Positives = 63/144 (44%), Gaps = 20/144 (14%)

Query  28   VRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGV--LPQLEQPYVFIKRSDARTAPHGHV-  84
            V G+   +EE L  A+Q L+     LV V   +   P +    V I  S       G   
Sbjct  29   VTGWDIPIEEALEYAKQQLRTPEPQLVFVPYYLSHAPGISGDRVVITDSIWYATNFGWQP  88

Query  85   MVELVAELEGIQYGRSGETLGVLVPH------VGEIPVAYRKVLLRKNGNKGAGGHSYGA  138
            + EL  + +G++YGR G T GVL+P       +G+I +  RK         G G +S   
Sbjct  89   IRELAMDKDGVRYGRGG-THGVLLPMQDPSFIMGDIDIQIRKY--------GIGANSPPD  139

Query  139  DLKSFDLGDELGTD--PYEDFQEN  160
             L  +D   + G D  PY DF +N
Sbjct  140  VLPLWDGFSDPGPDVGPYLDFPDN  163


>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens OX=9606 GN=CUBN 
PE=1 SV=5
Length=3623

 Score = 36.9 bits (84),  Expect = 0.080, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 39/98 (40%), Gaps = 7/98 (7%)

Query  73    RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAG  132
             RSD      G      +A+  G   G+SG      V  +G   + YR  L  +   +G  
Sbjct  2317  RSDNSPTHVGFKAKYSIAQCGGRVPGQSGV-----VESIGHPTLPYRDNLFCEWHLQGLS  2371

Query  133   GHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVT  170
             GH      + F+L +  G +  +DF E W+   S  + 
Sbjct  2372  GHYLTISFEDFNLQNSSGCE--KDFVEIWDNHTSGNIL  2407


>sp|Q9TU53|CUBN_CANLF Cubilin OS=Canis lupus familiaris OX=9615 
GN=CUBN PE=1 SV=1
Length=3620

 Score = 34.6 bits (78),  Expect = 0.56, Method: Composition-based stats.
 Identities = 26/98 (27%), Positives = 39/98 (40%), Gaps = 8/98 (8%)

Query  73    RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAG  132
             RSD  +   G  +   +A+  G   G+SG      +   G   + YR     +   KG  
Sbjct  2314  RSDNSSTQVGFKIKYAIAQCGGRVTGQSGI-----IESSGYPTLPYRDNSFCEWHLKGPS  2368

Query  133   GHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVT  170
             GH      + F L +  G +  +DF E W   H+SG  
Sbjct  2369  GHYLTIHFEDFHLQNSSGCE--KDFVEIWEN-HTSGNL  2403


>sp|F1RWC3|CUBN_PIG Cubilin OS=Sus scrofa OX=9823 GN=CUBN PE=1 
SV=3
Length=3625

 Score = 33.0 bits (74),  Expect = 1.4, Method: Composition-based stats.
 Identities = 25/98 (26%), Positives = 37/98 (38%), Gaps = 8/98 (8%)

Query  73    RSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAG  132
             RSD      G      +A+  G   G+SG      +   G   + Y   L  +   +G  
Sbjct  2319  RSDNSPTHAGFKAKYSIAQCGGTVTGQSGV-----IESSGYPALPYANNLFCEWRLQGLS  2373

Query  133   GHSYGADLKSFDLGDELGTDPYEDFQENWNTKHSSGVT  170
             GH      + F+L +  G +   DF E W   H+SG  
Sbjct  2374  GHYLTIHFEDFNLQNSSGCE--RDFVEIWEN-HTSGNL  2408


>sp|O07685|BGAM_LACAC Beta-galactosidase small subunit OS=Lactobacillus 
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) 
OX=272621 GN=lacM PE=3 SV=1
Length=316

 Score = 32.6 bits (73),  Expect = 1.8, Method: Composition-based stats.
 Identities = 18/55 (33%), Positives = 33/55 (60%), Gaps = 8/55 (15%)

Query  110  HVGEIPVAYRKVLLRKNGNKGAGG-HSYGADL-KSFDLGDELGTDPYEDFQENWN  162
            H+ E+P+A R VL+     +G GG  S+GAD+ K + +      +P +D++ ++N
Sbjct  266  HLEELPLARRTVLVIAGAVRGVGGIDSWGADVEKQYHI------NPEKDYEFSFN  314


>sp|Q8ST44|Y7I5_ENCCU UPF0329 protein ECU07_1850/ECU10_0050 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=ECU07_1850 
PE=3 SV=1
Length=634

 Score = 31.1 bits (69),  Expect = 5.7, Method: Composition-based stats.
 Identities = 22/53 (42%), Positives = 25/53 (47%), Gaps = 11/53 (21%)

Query  124  RKNGNKGAGGHSYGADLKSFDLGDELGT---DPYEDFQ--ENWNTKHSSGVTR  171
            RK GNKGAG      + K  D G+E G    DP E+    E W  K  SG  R
Sbjct  389  RKRGNKGAG------ESKEEDRGEEGGVEAEDPLEEMAVGEAWRKKKGSGEKR  435


>sp|Q8STZ1|YBK9_ENCCU UPF0329 protein ECU11_2090 OS=Encephalitozoon 
cuniculi (strain GB-M1) OX=284813 GN=ECU11_2090 PE=3 SV=1
Length=634

 Score = 31.1 bits (69),  Expect = 6.3, Method: Composition-based stats.
 Identities = 22/53 (42%), Positives = 25/53 (47%), Gaps = 11/53 (21%)

Query  124  RKNGNKGAGGHSYGADLKSFDLGDELGT---DPYEDFQ--ENWNTKHSSGVTR  171
            RK GNKGAG      + K  D G+E G    DP E+    E W  K  SG  R
Sbjct  389  RKRGNKGAG------ESKEEDRGEEGGVEAEDPLEEMAVGEAWRKKKGSGEKR  435


>sp|Q06530|DHSU_ALLVD Sulfide dehydrogenase [flavocytochrome c] 
flavoprotein chain OS=Allochromatium vinosum (strain ATCC 
17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=fccB 
PE=1 SV=3
Length=431

 Score = 30.7 bits (68),  Expect = 7.2, Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query  91   ELEGIQYGRSGETL-GVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDEL  149
            +LE I++G  G    G+ V H     +   K L+     K AGG  +G D      G EL
Sbjct  84   KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLV-----KTAGGAEFGYDRCVVAPGIEL  138

Query  150  GTDPYEDFQEN--------WNTKHSSGVTRELMRELNGG  180
              D  E + E         W     + + R+ + ++  G
Sbjct  139  IYDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADG  177



Lambda      K        H        a         alpha
   0.316    0.136    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0416    0.140     1.90     42.6     43.6 

Effective search space used: 9878801070

Search has CONVERGED!


  Database: uniprot_sprot.fasta
    Posted date:  Feb 9, 2024  7:20 PM
  Number of letters in database: 206,533,160
  Number of sequences in database:  570,830



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40