Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
2691701 | 207 | 10 | P51149(RAB7A_HUMAN) | RecName: Full=Ras-related protein Rab-7a ; EC=3.6.5.2 ; |
QUERYSEQ |
MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP YFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC |
207 |
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region | name | description |
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2-207 | CHAIN | /note="Ras-related protein Rab-7a" /id="PRO_0000121121" |
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15-22 | BINDING | /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791" |
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34-40 | BINDING | /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791" |
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63-67 | BINDING | /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791" |
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125-128 | BINDING | /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791" |
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156-157 | BINDING | /ligand="GTP" /ligand_id="ChEBI:CHEBI:37565" ECO:0000269|PubMed:20028791" |
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205-205 | LIPID | /note="S-geranylgeranyl cysteine" |
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207-207 | LIPID | /note="S-geranylgeranyl cysteine" |
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1-207 | DISORDER | predicted by DISOPRED |
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207 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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D | 100.0 | RAB7_RAT Ras-related protein Rab-7 | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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207 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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A | RAE1_RAT Rab proteins geranylgeranyltransferase component A.. | B | 100.0 /100.0 |
24 /24 |
RAB7_RAT Ras-related protein Rab-7 |
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A | RAE1_RAT Rab proteins geranylgeranyltransferase component A.. | B | 100.0 /100.0 |
19 /19 |
RAB7_RAT Ras-related protein Rab-7 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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207 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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F |
GDP
|
B | 100.0 /100.0 |
17 /17 |
RAB7_RAT Ras-related protein Rab-7 |
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F |
GNP
|
A | 100.0 /100.0 |
22 /22 |
RAB7_RAT Ras-related protein Rab-7 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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207 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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E |
MG
|
B | 100.0 /100.0 |
2 /2 |
RAB7_RAT Ras-related protein Rab-7 |
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J |
K
|
B | 100.0 /100.0 |
1 /1 |
RAB7_RAT Ras-related protein Rab-7 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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207 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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G |
PG4
|
B | 100.0 /100.0 |
4 /4 |
RAB7_RAT Ras-related protein Rab-7 |
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L |
P33
|
B | 100.0 /100.0 |
5 /5 |
RAB7_RAT Ras-related protein Rab-7 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |