Contact Molecules for Homologous Proteins | ||||
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PID | QueryLength | Homolgous Sequence in PDB | UniProt Query | TITLE |
13076 | 180 | 28 | YP_009725297.1() | |
QUERYSEQ |
MESLVPGFNEKTHVQLSLPVLQVRDVLVRGFGDSVEEVLSEARQHLKDGTCGLVEVEKGVLPQLEQPYVFIKRSDARTAPHGHVMVELVAELEGIQYGRSGETLGVLVPHVGEIPVAYRKVLLRKNGNKGAGGHSYGADLKSFDLGDELG TDPYEDFQENWNTKHSSGVTRELMRELNGG |
180 |
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region | name | description |
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1-180 | DISORDER | predicted by DISOPRED |
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180 | |||||||
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pdb_id | a1 | identity[%]2 | description | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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A | 86.1 | R1AB_CVHSA Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) | |||
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A | 86.1 | R1AB_CVHSA Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) | |||
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E | 88.6 | R1A_SARS Non-structural protein 1 | |||
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AA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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AA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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BB | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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JC | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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JA | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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U | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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IA | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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VA | 100.0 | R1AB_SARS2 Host translation inhibitor Nsp1 | |||
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JA | 100.0 | R1AB_SARS2 Host translation inhibitor nsp1 | |||
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HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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IA | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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HA | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
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HC | 100.0 | R1AB_SARS2 Non-structural protein 1 | |||
1.a1:asym_id for the homologue. 2.identity[%]2:sequence identity between the query and the homologue. |
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180 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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SB | RS2_HUMAN 40S ribosomal protein S2[222 aa] | JC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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C | RS2_HUMAN 40S ribosomal protein S2[218 aa] | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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D | RS2_HUMAN 40S ribosomal protein S2[218 aa] | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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D | RS2_HUMAN 40S ribosomal protein S2[218 aa] | U | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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C | RS2_HUMAN 40S ribosomal protein S2[216 aa] | VA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor Nsp1 |
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C | RS2_HUMAN 40S ribosomal protein S2[216 aa] | BB | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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F | uS5[221 aa] | AA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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F | uS5[221 aa] | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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S | RS2_HUMAN 40S ribosomal protein S2[218 aa] | JA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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DA | RS30_HUMAN 40S ribosomal protein S30[52 aa] | JA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 1 |
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CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | HC | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 1 |
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CC | RS30_HUMAN 40S ribosomal protein S30[58 aa] | JC | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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CA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | HA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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DA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | IA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Non-structural protein 1 |
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FA | RS30_HUMAN 40S ribosomal protein S30[56 aa] | IA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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T | RS30_HUMAN 40S ribosomal protein S30[56 aa] | U | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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S | RS30_HUMAN 40S ribosomal protein S30[44 aa] | VA | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Host translation inhibitor Nsp1 |
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HA | RS30_HUMAN 40S ribosomal protein S30[50 aa] | JA | 100.0 /100.0 |
2 /2 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | JA | 100.0 /100.0 |
10 /10 |
R1AB_SARS2 Non-structural protein 1 |
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ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Non-structural protein 1 |
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ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
5 /5 |
R1AB_SARS2 Non-structural protein 1 |
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ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | HC | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 |
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ZA | RS3_HUMAN 40S ribosomal protein S3[227 aa] | JC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | IA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Non-structural protein 1 |
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E | RS3_HUMAN 40S ribosomal protein S3[225 aa] | IA | 100.0 /100.0 |
10 /10 |
R1AB_SARS2 Non-structural protein 1 |
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W | RS3_HUMAN 40S ribosomal protein S3[224 aa] | VA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor Nsp1 |
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T | RS3_HUMAN 40S ribosomal protein S3[224 aa] | BB | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 |
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H | G1TNM3_RABIT Ribosomal protein S3[228 aa] | AA | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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H | G1TNM3_RABIT Ribosomal protein S3[228 aa] | AA | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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D | RS3_HUMAN 40S ribosomal protein S3[225 aa] | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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I | G1T8A2_RABIT eS30[57 aa] | AA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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I | G1T8A2_RABIT eS30[57 aa] | AA | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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A | DPOLA_HUMAN DNA polymerase alpha catalytic subunit[1070 aa] | E | 85.7 /88.6 |
14 /14 |
R1A_SARS Non-structural protein 1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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180 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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IA | 18S ribosomal RNA | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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B | 40S ribosomal rRNA18S | JA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 |
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WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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WA | 18S ribosomal RNA | HC | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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WA | 18S ribosomal RNA | JC | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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GA | 18S ribosomal RNA | HA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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HA | 18S ribosomal RNA | IA | 100.0 /100.0 |
9 /9 |
R1AB_SARS2 Non-structural protein 1 |
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A | 18S ribosomal RNA | IA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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A | 18S ribosomal RNA | U | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Non-structural protein 1 |
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T | 18S ribosomal RNA | VA | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor Nsp1 |
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R | 18S ribosomal RNA | BB | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Non-structural protein 1 |
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A | rRNA | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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A | rRNA | AA | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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180 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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B |
QO6
|
A | 100.0 /100.0 |
6 /6 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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B |
92G
|
A | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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B |
OEI
|
A | 100.0 /100.0 |
4 /4 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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B |
NT9
|
A | 100.0 /100.0 |
7 /7 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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B |
OG3
|
A | 100.0 /100.0 |
3 /3 |
R1AB_SARS2 Host translation inhibitor nsp1 |
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B |
OF6
|
A | 100.0 /100.0 |
8 /8 |
R1AB_SARS2 Host translation inhibitor nsp1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. | |||||||
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180 | pdb_id | contact mol | homologue | ||||
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a3 | description | a4 | identity[%]5 | Ncon6 | description | |
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KA |
MG
|
JA | 100.0 /100.0 |
1 /1 |
R1AB_SARS2 Host translation inhibitor nsp1 |
3.a3:asym_id for the contact molecule. 4.a4:asym_id for the template homologue. 5.identity[%]5:sequence identity between the query and the template homologue only for the contact residues. Number after the slash / is sequence identity for all the aligned region. 6.Ncon6:number of aligned contact residues for the query. Number after the slash / is number of contact residues in the template homologue. |