[pdbjlvh2]Protein Model on 8sq9_A_1_F

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8sq9_A_1_F_1

Protein Model on 8sq9_A_1_F_1 (TEMPLATE: 8sq9 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [926 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		F 1 (P)	polymer(polyribonucleotide)	Primer RNA	499D 759S 760D 761D 813C 814S 836R 840A 849K 857E 858R 861S 862L 865D (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8sq9_A_1 identity=100.0%

queryA         4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
                :****************************************************************************************************:
8sq9_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          : HHHHHHHSTTS   EE SS SSS EEEEEEEEEE SS EEEEEEEEEEEEEEEEE SSS EEEEEEEEEE  HHHHHHHHHHHHHHTT TTB EE  EE:    
ExpBur          :eeebbeebbeeeebebeeebebeeebeeebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbbbeeeebeebeebbeebeebebbbebebbe:    

queryA       104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
                :****************************************************************************************************:
8sq9_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :EEETTEEEEEEEEEEE SSBHHHHHHHHHS BTTB HHHHHHHHHTTSS GGGGTSSSTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEE:    
ExpBur          :beeeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbeebeebbebbbebbeebbebbebbbebbebbeebbbbb:    

queryA       204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
                :****************************************************************************************************:
8sq9_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  GGGBBTTS B   TT EE STT   EE SHHHHHHHHHHHHTTTTGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG  S:    
ExpBur          :bbbbbbbbbebbbbbbeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeebeeeeeeeebeeeeeebbebbeebbeebbeebebebbbbbeebee:    

queryA       304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
                :****************************************************************************************************:
8sq9_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :HHHHHHHHHHHHHHTTSS GGGSEEEEE  EETTEE  EEEEEEETTTEEEE S    SBS   HHHHHHHTTSHHHHHHHSEE   TT SS EEEESSS:    
ExpBur          :bbbbbbbbbbbbbbbebbbeebbbebeeebebeeeebebbbbbbbebbbbbebeeeeeeeeebeeeeebbbebbbbebbeeeeebebeebebebebbeee:    

queryA       404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
                :****************************************************************************************************:
8sq9_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S     B   EE HHHHHHHHHTT S TT S     B   B S SHHHHHHHHTT       HHHHHHHHHHHGGGGSS       GGG   S S SB  :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbbbbeebebbbbebeebebeeeeeebb:    
Contact         :                                                                                               b    

queryA       504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
                :****************************************************************************************************:
8sq9_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :TTGGGT BHHHHHHHS HHHHHHHHHHTTSS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHHT SSSSB TT  STTTHHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeebbebebbbbbbbbbbbebbbbebbeebeeeeebbbbbebebeebbbbebbe:    

queryA       604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
                :****************************************************************************************************:
8sq9_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HHTTT SSEEEEEEE TTHHHH  HHHHHHHHHHHGGG TTT  HHHHHHHHHHHHHHHTS EEE SSEEEE  SS  TTSTTHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeebebbbbebebbbbbbbbbbbbbbbbbbbbebeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbbebebeebbbbbbbbbbbbbbb:    

queryA       704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
                :****************************************************************************************************:
8sq9_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHTS SSS   HHHHHHHHHHHHHHHT SS  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHHS    TTT EEES:    
ExpBur          :bbbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbeee:    
Contact         :                                                       bbb                                          

queryA       804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
                :****************************************************************************************************:
8sq9_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
SecStr          : TTS  S BTTBEEEEEESSS EEEEEE  HHHHHHHHHEESSSGGG TTT SHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeebeebeeee:    
Contact         :         bb                     b   b        b       bb  bb  b                                      

queryA       904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :**************************:
8sq9_A_1     904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :      SGGGGGGSSHHHHGGGSS  :    
ExpBur          :eeeeeeeebeebbeeebbeebbeeee:

Protein Model on 8sq9_A_1_F_1 (TEMPLATE: 8sq9 )

Input Residue Numbers for Focused Sites