#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8gwn_A_1_B_1

Protein Model on 8gwn_A_1_B_1 (TEMPLATE: 8gwn )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [926 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [187 aa] Non-structural protein 8 :R1AB_SARS2 270L 271L 272K 273Y 274D 324T 326F 328P 330V 331R 340F 341V 365R 368F 371L 372L 380M 382A 383A 384S 386N 387L 388L 389L 391K 392R 403N 405V 407F 509W 514L 517D 518S 523D (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8gwn_A_1 identity=100.0%
queryA         4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
                :****************************************************************************************************:
8gwn_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          :  HHHHHHS SS   B  SS SSS     EE    SSS     EE         B  GGG   S      B  SHHHHHHHHHHHHHTT SSS      B:    
ExpBur          :eeebbeebbeeeeebbeeebeeeeeeeeebbbbeeeeebbbbbebeeeebbbbbbbeeeeeeeebbbbbbbeeeeebeebeebbeebeebebbbebebbe:    

queryA       104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
                :****************************************************************************************************:
8gwn_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :  SSSS  BB    S  SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGTSS SS SSS TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEE:    
ExpBur          :eeeeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbeebeebeebbeebbeebbebbbebbebbeebeeebbeb:    

queryA       204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
                :****************************************************************************************************:
8gwn_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  TTSSBSSS      S EE  TT  EEE SHHHHHHTTHHHHS TTGGGSBTTS TTS B    TT    SSHHHHHHHHS    SS   SSGGG SS:    
ExpBur          :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebeebbeebbeebbebbeeebbbebeebee:    
Contact         :                                                                  bbbbb                             

queryA       304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
                :****************************************************************************************************:
8gwn_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :SHHHHHHHHHHHHTTTSS SSS EE   EEEETTEEEE   EEE SSS EEE S   S  S   SHHHHHHHS HHHHHHSS     SS SS      SS:    
ExpBur          :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebbebbeebbbbeeeeeeeeeebeebebebebbeee:    
Contact         :                    b b b bb        bb                       b  b  bb       b bbb bbbb bb          b

queryA       404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
                :****************************************************************************************************:
8gwn_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S     B   EE HHHHHHHHHTT   TT S     B   B STTHHHHHGGGGG       STTHHHHHHHHHHHTTS       TTT   S S S   :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebebebbbebebbeebbbbbbbbbbbbbbbbbbbeebeebebebeebeeeeeeeebb:    
Contact         : b b                                                                                                

queryA       504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
                :****************************************************************************************************:
8gwn_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :GGGTTT  HHHHHHSS HHHHHHHHTTTTSS     B  EE    BS  S  EE  B HHHHHHHHHHHHHHHHHHTT  SSSB TT  STTTTHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebeeeeebbeeeebbbebebbbbbbbbbebbbbebbebbeeeeeebbbbeeebeeebbeebbe:    
Contact         :     b    b  bb    b                                                                                

queryA       604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
                :****************************************************************************************************:
8gwn_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HHTSS SS        SSTTTS  HHHHHHHHHHHT S SSSS SHHHHHHHHHHHHHHSS     SSS     SS  TTSSSHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebeebbbbbbbbbbbbbbbbbbeebeeebeeeeebbbbbbbbbbbbebbbbbebbbbbbebbbbeebbbeebbbbbbbbbbbbbbb:    

queryA       704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
                :****************************************************************************************************:
8gwn_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHSS TTT   SSHHHHHHHHHHHHTS SS  HHHHHHHHHHHHHS   EESSS EE    STTTTSSSS  SHHHHHHHHHHH     TTS    S:    
ExpBur          :bbbbbebebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe:    

queryA       804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
                :****************************************************************************************************:
8gwn_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
SecStr          : SSS  S SSS   B  EETTEE  B    HHHHHHHHHEESSTTTS SGGGHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeeeeee:    

queryA       904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :**************************:
8gwn_A_1     904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :S    S   TTTTSHHHHTGGGSS  :    
ExpBur          :eeeeeeeebeeebeeeebeebbeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123