#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [186 aa] | Non-structural protein 8 :R1AB_SARS2 | 269D 270L 271L 273Y 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 344T 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 390D 391K 392R 396F 400A 402T 403N 405V 407F 508K 509W 514L 517D 518S 523D 666M 675V (identity: 100.0 %/100.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7rdy_A_1 identity=100.0% |
queryA 3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102 :****************************************************************************************************: 7rdy_A_1 3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102 SecStr : TTHHHHHHHTTS EEEESSSSS EE EEESSS EEE EE S EEEEE TTS EEEEEEE B HHHHHHHHHHHHHSTT SSB EEEE: ExpBur :eeeebbeebbeebebebeeeeeeeeeeebebbebeeeeebbbbbbbebeebbbbbbbeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbb: queryA 103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202 :****************************************************************************************************: 7rdy_A_1 103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202 SecStr :EEESSSSEEEEEEEEEE SSBHHHHHHHHHS TTS HHHHHHHHHTTSS SSGGGSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE: ExpBur :ebebeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeebbbbbbebeebbebbbebbeebbebbeebbebbebbeebbbe: queryA 203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302 :****************************************************************************************************: 7rdy_A_1 203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302 SecStr :EE GGGBBTTS B SS EE STT EE HHHHHHHTTHHHHTTTTTTSSBGGG TTS B TT HHHHHHHHHHSSTT S SSGGG S: ExpBur :bebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbeebebebbbbbeebe: Contact : bbb b queryA 303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402 :****************************************************************************************************: 7rdy_A_1 303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402 SecStr :STTSHHHHHHHHHHHTTSS GGG B EEEEEETTEEEEEE EEEETTTEEEE S SEE HHHHHHHHHSHHHHHHTSEE TT SS EEEE S: ExpBur :ebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeebeebbbebbbbeeeeeeeebebeebebebebbee: Contact : b b bbbbb bbb b b bb b bbbbbbb bbbbbbb b b b queryA 403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502 :****************************************************************************************************: 7rdy_A_1 403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502 SecStr :SS B EE HHHHHHHHHTT S TT SS B B STTHHHHGGGGGG HHHHHHHHHHHHHHT S TTS S S SB : ExpBur :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebebeeeeeeb: Contact :b b b queryA 503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602 :****************************************************************************************************: 7rdy_A_1 503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602 SecStr : TTGGGT BHHHHHHHS HHHHHHHHHHHTTS EEEEEE BSS S EEEE HHHHHHHHHHHHHHHHHHTT SSSSB SS STTTHHHHHH: ExpBur :bbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebeeeebbbbebb: Contact : bb b bb b queryA 603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702 :****************************************************************************************************: 7rdy_A_1 603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702 SecStr :HHHTSS SSEEEEE TTHHHH HHHHHHHHHHTTSS SSSS HHHHHHHHHHHHHHTTS EEE SS EEE SS TTSSSSHHHHHHHHHHHHHHH: ExpBur :eebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbb: Contact : b b queryA 703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802 :****************************************************************************************************: 7rdy_A_1 703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802 SecStr :HHHHHHSS SSS HHHHHHHHHHHHHHHS SS HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHHS TTS EEE: ExpBur :bbbbbbebbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeebbeeebbbbbebbbbbbbbbbbbbbeeeebbeb: queryA 803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902 :****************************************************************************************************: 7rdy_A_1 803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902 SecStr : GGG S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESSGGGGSSTT SHHHHHHHHHTGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHS: ExpBur :eebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeeeebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeeeee: queryA 903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :***************************: 7rdy_A_1 903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929 SecStr :SSS SS GGGTTSHHHHHTTSSTT : ExpBur :eeeeeeeeebeeebeeeebeebbeeee: |