[pdbjlvh2]Protein Model on 7dfh_A_1_B

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7dfh_A_1_B_1

Protein Model on 7dfh_A_1_B_1 (TEMPLATE: 7dfh )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [908 aa]	RNA-directed RNA polymeras :R1AB_SARS2
2	b		B 1 (B)	polymer(polypeptide(L)) [114 aa]	Non-structural protein 8 :R1AB_SARS2	270L 271L 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 368F 371L 372L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 402T 403N 404N 405V 407F 447N 506F 508K 509W 514L 518S 666M (identity: 100.0 %/98.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7dfh_A_1 identity=98.2%

queryA         5:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 104
                :****************************************************************************************************:
7dfh_A_1       6:QSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKF: 105
SecStr          : HHHHHHHTTS  EEEESSSTTS EEEEEEEEEESSS EEEEEEEEEEEEEEEEE TT  EEEEEEEEE   HHHHHHHHHHHTTTTTSTTB  EEEEEE:    
ExpBur          :eebeeebbeeeebebeeeeeeeeeeebebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebebbee:    

queryA       105:RIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 204
                :***  ***********************************************************************************************:
7dfh_A_1     106:RIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGV: 205
SecStr          :   -- EEEEEE SB SSBHHHHHHHHHS  TT  HHHHHHHHHTTSS GGGGGSSS S TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEE:    
ExpBur          :eee--eebbbbbbebbbbbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbbebbebbebbeebbbebb:    

queryA       205:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304
                :****************************************************************************************************:
7dfh_A_1     206:LTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 305
SecStr          :  GGGBBTTS B   SS EE STT   EE HHHHHHHHHHHHHTTGGGGGGBTTS TTS B    TT    HHHHHHHHHHHSTT  S   SSGGG SSH:    
ExpBur          :bbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebebbbeebeeb:    
Contact         :                                                                 bb b                               

queryA       305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404
                :****************************************************************************************************:
7dfh_A_1     306:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 405
SecStr          :HHHHHHHHHHHHHTTTS TTS EEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHH HHHHHHHSB    TT SS EEEESSSS:    
ExpBur          :bbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebeebbbebbbbeeeeeeeebebeebebebebbeeee:    
Contact         :                  bb b bbbbb     bbbb                          b  bb  b  bbbbbbbbbbbbbbb   b b   bbb

queryA       405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504
                :****************************************************************************************************:
7dfh_A_1     406:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 505
SecStr          :     B   EE HHHHHHHHHTT S TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHHHTT S       GGG   S SSSB  B:    
ExpBur          :eeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbbbbeebeebbbebeebeeeebeeebbb:    
Contact         :b b                                       b                                                         

queryA       505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604
                :****************************************************************************************************:
7dfh_A_1     506:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 605
SecStr          :TGGGT BHHHHHHHS HHHHHHHHHHHTTS    B EEEE    BSSS   EEEE  HHHHHHHHHHHHHHHHHHHH  SSSB TT  STTTHHHHHHHH:    
ExpBur          :bbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebeeeeeeebebebbbbbbbbbebbbbebbebbbeeeebbbbbeeebeebbbeebbee:    
Contact         : b bb    b   b                                                                                      

queryA       605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704
                :****************************************************************************************************:
7dfh_A_1     606:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 705
SecStr          :HSSS SSEEEEEE  TTTTTS  HHHHHHHHHHHHTT TTT  HHHHHHHHHHHHHHTTS EEESSSEEEE  S   TT TTHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeebeeeebbbbebeebbbbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbeebbbebebbbbeebebbebbbbbbbbbbbbbbbb:    
Contact         :                                                             b                                      

queryA       705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804
                :****************************************************************************************************:
7dfh_A_1     706:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 805
SecStr          :HHHHTS SSS S SHHHHHHHHHHHHHHT SS  TTHHHHHHHHHHHHEEEEE SS EEEEEEHHHHHTTSS  HHHHHHHHHHHHS    TTTSEEE  :    
ExpBur          :bbbbbbebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebbeeee:    

queryA       805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904
                :*******************************************************************************************         :
7dfh_A_1     806:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXX: 905
SecStr          :SSS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSHHHHHHHHHHHHHHTGGGTTSSSHHHHHHHHHHHHHHHHHHHH ---------:    
ExpBur          :eeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebbbebbbbeebeeeebbebbebbbebbeebeeee---------:    

queryA       905:VMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :      *******************:
7dfh_A_1     906:XXXXXXNTSRYWEPEFYEAMYTPHT: 930
SecStr          :------ TTSTTSTHHHHTTSSS  :    
ExpBur          :------eeeeeeeeeebeebbeeee:

Protein Model on 7dfh_A_1_B_1 (TEMPLATE: 7dfh )

Input Residue Numbers for Focused Sites