#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [926 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [187 aa] | Non-structural protein 8 :R1AB_SARS2 | 270L 271L 273Y 324T 325S 326F 328P 329L 330V 331R 332K 339P 340F 368F 371L 372L 375A 380M 381H 384S 386N 387L 388L 389L 390D 391K 392R 402T 403N 404N 405V 407F 509W 518S 666M (identity: 100.0 %/99.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cxn_A_1 identity=99.9% |
queryA 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 :****************************************************************************************************: 7cxn_A_1 4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103 SecStr : HHHHHHHTTS EEESSSSSS EEEEEEEEEESSS EEEEEEEEEEEEEEEEEEGGGEEEEEEEEEEE SHHHHHHHHHHHHHTTSTTS EEEEE: ExpBur :eeebbeebbeeeeeebeeeeeeeeeeeeebbbbeeeeebbbbbeeeeeebbbbbbeeeeeeeeebbbbbbeeeeeebeebeebbeebeebebbbebebbe: queryA 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 :****************************************************************************************************: 7cxn_A_1 104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203 SecStr :EESSS EEEEEEE S SS HHHHHHHHHS TTS HHHHHHHHHTTSS GGGGSSTTSS SSSSTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEE : ExpBur :eeeeeeeebbbbbbebbebbbbbbbbbbbebeeeebeebeebbeebebbeeebbeeeebbbbeebeebeebbeebbeebbebbeebbebbeebeeebbeb: queryA 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 :****************************************************************************************************: 7cxn_A_1 204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303 SecStr : GGGB SSS B S EE TT B HHHHHHHHHHHHHTTTTGGGSBTTS TTS B TT HHHHHHHHHHS TT S SSGGG SS: ExpBur :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbeebeeebbbbbeebee: Contact : bb b queryA 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 :****************************************************************************************************: 7cxn_A_1 304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403 SecStr :SHHHHHHHHHHHHHTTSS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S SSBS HHHHHHHHS HHHHHHTSEE SS SS EEEESSS: ExpBur :bebbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeeeeeeeebbeebbbbeeeeeeeebebeebebebebbeee: Contact : bbb bbbbb bb b bb b bb b bbbbbbb bb queryA 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 :****************************************************************************************************: 7cxn_A_1 404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503 SecStr :S B EE HHHHHHHHHTT S TT S B B SSHHHHHHGGGGG STTHHHHHHHHHHTT S GGG SS S : ExpBur :eeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeeeeeebebebbbebebbeebbbbbbbbbbbbbbbebbbeebeebebebeeeeeeeeeeebb: Contact :bb b queryA 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 :****************************************************************************************************: 7cxn_A_1 504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603 SecStr :TTGGGT HHHHHHHS TTHHHHHHHHHTTS EEEEEE BSSSS EEEE HHHHHHHHHHHHHHHHHHHT SSSSB TT TTTHHHHHHH: ExpBur :bbbeeeeebeebbeebeeeebeebbeebbebbbbbbbebebeeebeeeeeeebebebbbbbbbbbebbbbebbebbeeeeeebbbbeeeeeebbbeebbe: Contact : b b queryA 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 :****************************************************************************************************: 7cxn_A_1 604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703 SecStr :HTTTT SSEEEEE TTTTTS HHHHHHHHHHHHTT TTTS SHHHHHHHHHHHHHTTS EEEETTEEEE SS TTSSSHHHHHHHHHHHHHHHHH: ExpBur :ebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbeebeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbbb: Contact : b queryA 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 :****************************************************************************************************: 7cxn_A_1 704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803 SecStr :HHHHHSS TTT HHHHHHHHHHHHHHHT S SHHHHHHHHHHHHHEEEEE SS EEEEEEHHHHHTTSS SHHHHHHHHHHHS TTT EEE : ExpBur :bbbbbbeebeebeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbeeebbbbbbbbbbbbbbeeeebbebe: queryA 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 :****************************************************************************************************: 7cxn_A_1 804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903 SecStr : TTS S BTTBEEEEEEETTEEEEEEE HHHHHHHHHEESTTTTTTGGG HHHHHHHHHHTSGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS: ExpBur :ebeebbeebeebebbebebeeeebbbbbbebbebbbbbbebeeeebeebbeebeebbebbbebbbbeebeeeeebebbebbbebbeebbeeeeeeeeeee: queryA 904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929 :****** *******************: 7cxn_A_1 904:SVMLTNNNTSRYWEPEFYEAMYTPHT: 929 SecStr :SS S GGGGSHHHHHGGGSS : ExpBur :eeeeeeeebeeebeeeebeebbeeee: |