[pdbjlvh2]Protein Model on 7ctt_A_1_C

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7ctt_A_1_C_1

Protein Model on 7ctt_A_1_C_1 (TEMPLATE: 7ctt )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [826 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		C 1 (C)	polymer(polypeptide(L)) [63 aa]	Non-structural protein 7 :R1AB_SARS2	409T 411K 412P 413G 415F 420Y 429F 436E 437L 440F 442F 443A 444Q 445D 552N 843F (identity: 100.0 %/92.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ctt_A_1 identity=92.0%

queryA        31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130
                :********************                                 *****************                 *************:
7ctt_A_1      31:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXXRLTKYTMADLVYA: 130
SecStr          : EEEEEEE SS EEEEEEE ---------------------------------  GGGGSTTSTTB    -----------------   SSBHHHHHHH:    
ExpBur          :eeebbbbeeeebbbbbebee---------------------------------eebbeebeebebbbeee-----------------eeeebbbbbbbbb:    

queryA       131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230
                :****************************************************************************************************:
7ctt_A_1     131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230
SecStr          :HHS  TTSTHHHHHHHTTTTSS GGGSSSTT S SSS TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEE  GGGSBSSS B    S EE  TT  :    
ExpBur          :bbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbbebbbebbebbeebbebbebbeebbbebebbbbbbbbebbbeebeebeeeeeeeb:    

queryA       231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330
                :****************************************************************************************************:
7ctt_A_1     231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330
SecStr          : EE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG SSHHHHHHHHHHHHHHTSSS TTS EEEE:    
ExpBur          :ebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbbbbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe:    

queryA       331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430
                :****************************************************************************************************:
7ctt_A_1     331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430
SecStr          :EEEEESSSEEEEEEEEE SSS EEE SS  SEE S  HHHHHHHHH HHHHHTSSEE   TT SS EEEESSSS     B   EE HHHHHHHHTTT S :    
ExpBur          :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeebeebbbebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbe:    
Contact         :                                                                              b bbb b    b        b 

queryA       431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530
                :****************************************************************************************************:
7ctt_A_1     431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530
SecStr          :TT S     B   B TTSHHHHHGGGGG       HHHHHHHHHHHHHHT SS      GGG       S   TTTTTT  HHHHHHHS HHHHHHHHHH:    
ExpBur          :eeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbbbebeeeebeeeeeebbbbbeeeeebeebbeebeeeebeebbeb:    
Contact         :     bb  b bbbb                                                                                     

queryA       531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630
                :****************************************************************************************************:
7ctt_A_1     531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630
SecStr          :HTTS    EEEEEE    BSSS   EEEE  HHHHHHHHHHHTTHHHHHTT  SSSB TT  STTTHHHHHHHHHHTT SSEEEEEE  TTTTTS  HHH:    
ExpBur          :bbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebbebbbeebbeebbeebeeeebbbbebbebbbbbbbbb:    
Contact         :                     b                                                                              

queryA       631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730
                :****************************************************************************************************:
7ctt_A_1     631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730
SecStr          :HHHHHHHHHTT TTT  HHHHHHHHHHHHHHHTS EEEETTEEEE  S   TTSTTHHHHHHHHHHHHHHHHHHHHHHTS GGG S HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbbbeebeeeebeebbeebbeb:    

queryA       731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830
                :****************************************************************************************************:
7ctt_A_1     731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830
SecStr          :HHS  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHTT     TTS EEE  SSS  S SSS B  EEESSSSEEE  :    
ExpBur          :bbeeeeeeeebbebbbebbeebbbbbbebebbbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebeeeeebbeebeebbbbebebeeeebbbb:    

queryA       831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPH: 928
                :**************************************************************                      **************:
7ctt_A_1     831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHXXXXXXXXXXXXXXXXXXXXXXYWEPEFYEAMYTPH: 928
SecStr          :B  HHHHHHHHHEESSSTTS SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHH   ----------------------  STTTTTTTSS  :    
ExpBur          :bbebbebbbbbbbbeeebeeeeeebeebbbebbbebbbbeebeeeeebebbebbbebbeeee----------------------eeeeeebeebbeee:    
Contact         :            b

Protein Model on 7ctt_A_1_C_1 (TEMPLATE: 7ctt )

Input Residue Numbers for Focused Sites