[pdbjlvh2]Protein Model on 7bv1_A_1_B

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7bv1_A_1_B_1

Protein Model on 7bv1_A_1_B_1 (TEMPLATE: 7bv1 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [836 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		B 1 (B)	polymer(polypeptide(L)) [114 aa]	Non-structural protein 8 :R1AB_SARS2	270L 271L 273Y 324T 326F 328P 329L 330V 331R 332K 340F 341V 368F 371L 375A 378P 379A 380M 381H 382A 383A 384S 385G 386N 387L 388L 389L 390D 391K 392R 396F 398V 400A 402T 403N 405V 407F 506F 509W 514L 518S 666M (identity: 100.0 %/92.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7bv1_A_1 identity=92.7%

queryA        31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYA: 130
                :********************                                 *****************                **************:
7bv1_A_1      32:VYRAFDIYNDKVAGFAKFLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETIYNLLKDCPAVAKHDXXXXXXXXXXXXXXXXQRLTKYTMADLVYA: 131
SecStr          :  EEEEEE SS EEEEEE  --------------------------------- GGGGGTTTSTTB    ----------------    S BHHHHHHH:    
ExpBur          :eeebebeeeeebbbbbebee---------------------------------eebbeebeebebbbeee----------------eeeeebbbbbbbbb:    

queryA       131:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 230
                :****************************************************************************************************:
7bv1_A_1     132:LRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSG: 231
SecStr          :HHS  SSS HHHHHHHHHTTSS GGGGGSSS S SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE  GGGBBTTS B    S EE STT  :    
ExpBur          :bbebeeeebebbeebbbebebbeeebbeeeebbbbeeeeebbebbeebbeebbebbeebbebbebbeebbbebbbbbbbbbbebbbeebeebeeeeeeeb:    

queryA       231:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 330
                :****************************************************************************************************:
7bv1_A_1     232:VPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLV: 331
SecStr          :EEE HHHHHHHTHHHHHTTGGGGGGBTTS TTS B    TT    HHHHHHHHHHH TT  S   SSGGG  SHHHHHHHHHHHHHHTTSS GGG EEEE:    
ExpBur          :ebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbbeebbbbbe:    
Contact         :                                       bb b                                                  b b bbb

queryA       331:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 430
                :****************************************************************************************************:
7bv1_A_1     332:RKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFK: 431
SecStr          :EEEEETTEEEEEEEEEEETTTEEE  SS  SEE S  HHHHHHHTTSHHHHHHHSEE   SS  S EEEESSSS     B   EE HHHHHHHHHTT S :    
ExpBur          :eebebeeeeeebbbbbbbebbbbbebeeeeeebeeeeeeeebbbebbbbebeeeeeeeebeebebebebbeeeeeeeeebeeeeebeebeeebeeeebee:    
Contact         :bb       bb                          b  b   b  bbbbbbbbbbbbbbb   b b b bb b b                       

queryA       431:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 530
                :****************************************************************************************************:
7bv1_A_1     432:EGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAY: 531
SecStr          :TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHHHHTTTS      STT       S   TTTTTS  HHHHHHHS HHHHHHHHHH:    
ExpBur          :eebebeeebebeebebebebebbbbbebbeebbbbbbbbbbbbbbbbebbeebeebbbebeebeeeeeeeebbbbbeeeeebeebbeebeeeebeebbeb:    
Contact         :                                                                           b  b    b   b            

queryA       531:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 630
                :****************************************************************************************************:
7bv1_A_1     532:TKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNML: 631
SecStr          :HHHS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHTT SSSSB TT  STTTHHHHHHHHHHSS SSEEEEE   TTHHHH  HHH:    
ExpBur          :bbebbbbbbbebebeebbbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbbebebebbbbeebbeebbeebeeeebbbbebeebebbbbbbb:    

queryA       631:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 730
                :****************************************************************************************************:
7bv1_A_1     632:RIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYEC: 731
SecStr          :HHHHHHHHTTT SSSS HHHHHHHHHHHHHHHTS EEEETTEEEE  S   TT TTHHHHHHHHHHHHHHHHHHHHHHSS TTT   HHHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebebbebbbbbbbbbbbbbbbbbbbbebebeebeeeebeebbbebbeb:    
Contact         :                                   b                                                                

queryA       731:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 830
                :****************************************************************************************************:
7bv1_A_1     732:LYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLP: 831
SecStr          :HHT  S  HHHHHHHHHHHHHHEEEEE SS EEEEEEHHHHTTTSS  HHHHHHHHHHHHS    TTS EEES TTS  S BTTBEEEEEEETTEEEEEE:    
ExpBur          :bbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbebeebeebbeebeebebbebebeeeebbbb:    

queryA       831:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTV: 930
                :*****************************************************************               ******************* :
7bv1_A_1     832:YPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXXXXXXXXXNTSRYWEPEFYEAMYTPHTX: 931
SecStr          :E  HHHHHHHHHEE SSSTT SHHHHHHHHHHHHHHGGGGGSS HHHHHHHHHHHHHHHHHHHH ---------------  S  SSTHHHHGGGSTT -:    
ExpBur          :bbebbebbbbbbbbeeebeeeeeebbebbbebbbebbbbeeeeeeeebebbebbbebbeebeeee---------------eeeeeeeeebbeebbeeee-:    

queryA       931:LQ: 932
                : *:
7bv1_A_1     932:XQ: 933
SecStr          :- :    
ExpBur          :-e:

Protein Model on 7bv1_A_1_B_1 (TEMPLATE: 7bv1 )

Input Residue Numbers for Focused Sites