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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | B 1 (B) | polymer(polypeptide(L)) [585 aa] | Helicase :R1AB_SARS2 | |
2 | b | I 1 (B) | non-polymer(JG4) | 2-(thiophen-2-yl)-1H-imidazole | 5475I 5509Y 5516K 5548Y 5550V (identity: 100.0 %/98.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5rlu_B_1 identity=98.8% |
queryA 5326:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD:5425 :****************************************************************************************************: 5rlu_B_1 2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101 SecStr : EE TTT EES EESSSTT B HHHHHHHHTTSS EESSS S STT GGGEEEETTEEEETTT SSEEESEETTEE TTSTT S: ExpBur :ebebbbeebebbbebbebeeebebbbbbbeebbeebebeebbbeeebebebeebeeeebeebbbbeeebebeeeeeeebeebbeeeebebeebeebebee: queryA 5426:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE:5525 :****************************************************************************************************: 5rlu_B_1 102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201 SecStr : HHHHHHHH S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHTS EEEEE SSSB EEEE SSS STT EEEEEE SSSEEEEEEEE : ExpBur :ebeebbebbebebbebebbebbbebeeebbbbbbbbbebebbeeeeebbebebeeeeeebebebebeeeeeebeebeebebbbbbeeeeeeeebeebbbe: Contact : b b b queryA 5526:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS:5625 :** **********************************************************************************************: 5rlu_B_1 202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301 SecStr :B ---- BB EESS TT EEEE S SS B SS S S TTSGGGHHHHHHHTTBSEEEEE TTS HHHHHHHHHHHSSS: ExpBur :ee----ebebeeeeeeebeeebbbebeeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebbeebeebbebebbbbbbbbebebebbbbbbbebbee: Contact : b b queryA 5626:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD:5725 :*********************************** **************************************************************: 5rlu_B_1 302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401 SecStr : EEEE SSHHHHHHHHHHHHHHS GGGEEEE --- SS TT TTSSEEEE STT SEEEEEEEE GGG HHHHHHHHHHEEEEEEEEEE : ExpBur :bbbbbbbeeeebbeebbeebeebbeeeebbbbeee---eebbeebeeeeeebbbbbbbbebbeeeebebbbbbebbebebbbbbbbbeebebebbbbbbb: queryA 5726:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT:5825 :****************************************************************************************************: 5rlu_B_1 402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501 SecStr :TTS TT BS GGGS HHHHHHHHT SEE EE SS HHHHHHHHHHHSTT EESS S EEEEE EEE SS EEEHHHHHHHHHHHH: ExpBur :bbbbbbebebbeeeebebebbbbbbeebeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe: queryA 5826:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP:5917 :********************************************************************************************: 5rlu_B_1 502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593 SecStr :H GGGGG EEEES HHHHHHHHHHT EEEHHHHTT EEEEEEE S STTTT HHHHHHHHTTEEEEEEEEES HHHHHH SEE : ExpBur :eeeebeebbbbbbbbbbbebbeeebebeeeebeebbeeeeebbbbbbbbeeeebbbebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee: |