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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(R1AB_SARS2) | B 1 (B) | polymer(polypeptide(L)) [585 aa] | Helicase :R1AB_SARS2 | |
2 | b | H 1 (B) | non-polymer(VVP) | 4-methoxy-1H-indole | 5875E 5876T 5877A 5880C (identity: 100.0 %/98.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5rle_B_1 identity=98.8% |
queryA 5326:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD:5425 :****************************************************************************************************: 5rle_B_1 2:VGACVLCNSQTSLRCGACIRRPFLCCKCCYDHVISTSHKLVLSVNPYVCNAPGCDVTDVTQLYLGGMSYYCKSHKPPISFPLCANGQVFGLYKNTCVGSD: 101 SecStr : B TTT BS EETTSTT B HHHHHHHHTTSS EESSS BS STT GGGEEEETTEEEETTT SS EESEETTEE S SSS S: ExpBur :eeebbbeebebbbebeebeeebebbbbbbeebbeebebeebbbeeebebebeeeeeeebeebbbbeeebebeeeeeeebeebbeeeebebeeeeeeeeee: queryA 5426:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE:5525 :****************************************************************************************************: 5rle_B_1 102:NVTDFNAIATCDWTNAGDYILANTCTERLKLFAAETLKATEETFKLSYGIATVREVLSDRELHLSWEVGKPRPPLNRNYVFTGYRVTKNSKVQIGEYTFE: 201 SecStr : THHHHHHHH S BHHHHHHHHHS HHHHHHHHHHHHHHHHHHHHSS EEEEE SSSEEEEEE SSS STTS EEEEEEETTEEEEEEEEEEE: ExpBur :ebeebbebbeeebbebebbebbbebeeebbbbbbbbbbbebbeeeeebbebebeeeeeeeebebebeeeeeebeebeebebbbbbeeeeeeeebeebebe: queryA 5526:KGDYGDAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS:5625 :** **********************************************************************************************: 5rle_B_1 202:KGXXXXAVVYRGTTTYKLNVGDYFVLTSHTVMPLSAPTLVPQEHYVRITGLYPTLNISDEFSSNVANYQKVGMQKYSTLQGPPGTGKSHFAIGLALYYPS: 301 SecStr :E ---- EEEEESS TT EEEE S SS B SS S S TTTGGGHHHHHHHTTBSEEEEE TTS HHHHHHHHHHHSSS: ExpBur :ee----ebebeeeeeeebeeebbbebbeeebeebebebbbeeeeeeeeeebeeeeeeeeebeebeebbeebbebebbbbbbbbebebebbbbbbbebbee: queryA 5626:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPARARVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD:5725 :*********************************** **************************************************************: 5rle_B_1 302:ARIVYTACSHAAVDALCEKALKYLPIDKCSRIIPAXXXVECFDKFKVNSTLEQYVFCTVNALPETTADIVVFDEISMATNYDLSVVNARLRAKHYVYIGD: 401 SecStr :S EEEEESSHHHHHHHHHHHHHHS GGGEEE --- SSEET TTSSEEEEEGGG SEEEEEEEEE GGG HHHHHHHHHHEEEEEEEEEE : ExpBur :bbbbbbbeeeebbbebbeebeeebeeeebbbbeee---eebbeebeeeeeeeebbbbbbebbeebebebbbbbebbebbbbbbbbbbeebebebbbbbbb: queryA 5726:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT:5825 :****************************************************************************************************: 5rle_B_1 402:PAQLPAPRTLLTKGTLEPEYFNSVCRLMKTIGPDMFLGTCRRCPAEIVDTVSALVYDNKLKAHKDKSAQCFKMFYKGVITHDVSSAINRPQIGVVREFLT: 501 SecStr :TTS TT BS GGGS HHHHHHHHT SEE EESSS HHHHHHHHHHHSTT EESS S EEEEE EEE SS EEEHHHHHHHHHHHH: ExpBur :bbbbebebebbeeeebebebbbbbbebbeeeeeebebeebebbbbbbbebbbebbbeeebeeeeeeeeebbbbeeeeeeeeeeebbbbeebbbbbeebbe: queryA 5826:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP:5917 :********************************************************************************************: 5rle_B_1 502:RNPAWRKAVFISPYNSQNAVASKILGLPTQTVDSSQGSEYDYVIFTQTTETAHSCNVNRFNVAITRAKVGILCIMSDRDLYDKLQFTSLEIP: 593 SecStr :H GGGGG EEEES HHHHHHHHHHH EEEHHHHTT EEEEEEE STTTT HHHHHHHHTTEEEEEEEEES HHHHHH SEE : ExpBur :eeeebeebbbbbbbbbbbebbeeebebeeebbeebbeeeeebbbbbbbbeeeebebebbbbbbbbbbeebbbbbbbbeebbeebebeeeeee: Contact : bbb b |