#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7re1_A_1_B_1

Protein Model on 7re1_A_1_B_1 (TEMPLATE: 7re1 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [927 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [186 aa] Non-structural protein 8 :R1AB_SARS2 270L 271L 273Y 323P 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 341V 344T 368F 371L 372L 374Y 375A 378P 379A 380M 381H 382A 383A 384S 386N 387L 388L 389L 390D 391K 392R 396F 400A 402T 403N 404N 405V 407F 447N 508K 509W 514L 515Y 518S 523D 666M 675V (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7re1_A_1 identity=100.0%
queryA         3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
                :****************************************************************************************************:
7re1_A_1       3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
SecStr          : HHHHHHHHH SS   EEESSSSS  EEEEE  EEE SS EEE  EEEEEE EEEEEETTTEEEEEEEE  B  HHHHHHHHHHHHHHTT TTS EEEEE:    
ExpBur          :eeeebbeebbeeeebebeeeeeeeeebebebbebeeeeebbbbbbbebeebbbbbbbeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbb:    

queryA       103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
                :****************************************************************************************************:
7re1_A_1     103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
SecStr          :EEESSSSEEEEEEEEEE SSBHHHHHHHHHS  TTS SHHHHHHHHTTSS SSGGGSTTSS TTT THHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEE:    
ExpBur          :ebebeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbe:    

queryA       203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
                :****************************************************************************************************:
7re1_A_1     203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
SecStr          :EE  GGGBBSS  B   TT EE STT  EEE HHHHHHHHHHHHHTTGGGGGGBGGG TTS B    TT    HHHHHHHHHHHSSS  S   SSGGG S:    
ExpBur          :bbbbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbeebeeebbbbbeebe:    
Contact         :                                                                   bb b                             

queryA       303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
                :****************************************************************************************************:
7re1_A_1     303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
SecStr          :SHHHHHHHHHHHHHHGGGS GGGSEEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHHSHHHHHHHSEE   TT SS EEEESS:    
ExpBur          :ebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeebeebbbebbbbebeeeeeebebeebebebebbee:    
Contact         :                    bb b bbbbb     bbbb  b                       b  bb bb  bbbbbbb bbbbbbb   b   b b

queryA       403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
                :****************************************************************************************************:
7re1_A_1     403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
SecStr          :SS     B   EE HHHHHHHHHTT S TT S     B   B TTSHHHHHGGGGG       HHHHHHHHHHHHHHT S       GGG   S SSS  :    
ExpBur          :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebebebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebeeeeeeeeb:    
Contact         :bbb b                                       b                                                       

queryA       503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
                :****************************************************************************************************:
7re1_A_1     503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
SecStr          : TTGGGT  HHHHHHHS HHHHHHHHHHTTTS    EEEEEE    BSS S  EEEE  HHHHHHHHHHHHHHHHHHHT SSSSB  S  STTTHHHHHH:    
ExpBur          :bbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbbeeeebebbbeebb:    
Contact         :     bb    bb  b    b                                                                               

queryA       603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
                :****************************************************************************************************:
7re1_A_1     603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
SecStr          :HHHTSS SSEEEEE   TTHHHH  HHHHHHHHHHHGGG TTTS HHHHHHHHHHHHHHTTS EEESSSEEEE  SS  TTSSSSHHHHHHHHHHHHHHH:    
ExpBur          :eebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbb:    
Contact         :                                                               b        b                           

queryA       703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
                :****************************************************************************************************:
7re1_A_1     703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
SecStr          :HHHHHHHS SSS   HHHHHHHHHHHHHHHS  S  HHHHHHHHHHHHHHS EEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHHS    TTS EEE:    
ExpBur          :bbbbbbbbbbeebeeeebeebbbbbbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeebbeeebbbbbebbbbbbbbbbbbbbeeeebbeb:    

queryA       803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
                :****************************************************************************************************:
7re1_A_1     803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
SecStr          :S GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSSSS SHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeeebebbebbbebbeebbeeebeeeeee:    

queryA       903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :***************************:
7re1_A_1     903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :SSS  S   GGGGGSTHHHHGGG TT :    
ExpBur          :eeeeeeeeebeeebeeeebeebbeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123